Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Nov 25 20:52:43 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --with-clanguage=cxx --with-shared-libraries=1 --download-fblaslapack=1 --with-mpi=1 --download-parmetis=1 --download-metis=1 --with-netcdf=1 --download-exodusii=1 --with-hdf5-dir=/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5 --with-debugging=yes --with-c2html=0 --with-64-bit-indices=1 PETSC_ARCH=arch-linux2-cxx-debug Working directory: /glade/p/work/fandek/petsc Machine platform: ('Linux', 'yslogin3', '2.6.32-358.el6.x86_64', '#1 SMP Tue Jan 29 11:47:41 EST 2013', 'x86_64', 'x86_64') Python version: 2.6.6 (r266:84292, Oct 12 2012, 14:23:48) [GCC 4.4.6 20120305 (Red Hat 4.4.6-4)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/glade/p/work/fandek/petsc/config/BuildSystem/config/framework.py:832) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:832) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/gdb...not found Checking for program /glade/u/home/fandek/bin/gdb...not found Checking for program ./gdb...not found Checking for program /usr/lib64/qt-3.3/bin/gdb...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/gdb...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/gdb...not found Checking for program /glade/apps/opt/usr/bin/gdb...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/gdb...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/gdb...not found Checking for program /usr/bin/gdb...found Defined make macro "GDB" to "/usr/bin/gdb" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/dbx...not found Checking for program /glade/u/home/fandek/bin/dbx...not found Checking for program ./dbx...not found Checking for program /usr/lib64/qt-3.3/bin/dbx...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/dbx...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/dbx...not found Checking for program /glade/apps/opt/usr/bin/dbx...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/dbx...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /usr/local/openssh/5.7p1krb/bin/dbx...not found Checking for program /usr/lpp/mmfs/bin/dbx...not found Checking for program /opt/ibutils/bin/dbx...not found Checking for program /ncar/opt/hpss/dbx...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/dbx...not found Checking for program /glade/u/home/fandek/dbx...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/xdb...not found Checking for program /glade/u/home/fandek/bin/xdb...not found Checking for program ./xdb...not found Checking for program /usr/lib64/qt-3.3/bin/xdb...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/xdb...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/xdb...not found Checking for program /glade/apps/opt/usr/bin/xdb...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/xdb...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /usr/local/openssh/5.7p1krb/bin/xdb...not found Checking for program /usr/lpp/mmfs/bin/xdb...not found Checking for program /opt/ibutils/bin/xdb...not found Checking for program /ncar/opt/hpss/xdb...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/xdb...not found Checking for program /glade/u/home/fandek/xdb...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/dsymutil...not found Checking for program /glade/u/home/fandek/bin/dsymutil...not found Checking for program ./dsymutil...not found Checking for program /usr/lib64/qt-3.3/bin/dsymutil...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/dsymutil...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/dsymutil...not found Checking for program /glade/apps/opt/usr/bin/dsymutil...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/dsymutil...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...not found Checking for program /bin/dsymutil...not found Checking for program /usr/sbin/dsymutil...not found Checking for program /sbin/dsymutil...not found Checking for program /usr/local/openssh/5.7p1krb/bin/dsymutil...not found Checking for program /usr/lpp/mmfs/bin/dsymutil...not found Checking for program /opt/ibutils/bin/dsymutil...not found Checking for program /ncar/opt/hpss/dsymutil...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/dsymutil...not found Checking for program /glade/u/home/fandek/dsymutil...not found Defined make macro "DSYMUTIL" to "true" Defined "USE_GDB_DEBUGGER" to "1" ================================================================================ TEST configureGit from config.sourceControl(/glade/p/work/fandek/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/git...not found Checking for program /glade/u/home/fandek/bin/git...not found Checking for program ./git...not found Checking for program /usr/lib64/qt-3.3/bin/git...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/git...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/git...not found Checking for program /glade/apps/opt/usr/bin/git...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/git...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 1.7.1 ================================================================================ TEST configureCLanguage from PETSc.options.languages(/glade/p/work/fandek/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is Cxx Defined "CLANGUAGE_CXX" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/glade/p/work/fandek/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 1 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 6 #define PETSC_VERSION_SUBMINOR 2 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/glade/p/work/fandek/petsc" ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/glade/p/work/fandek/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Executing: cd /glade/p/work/fandek/petsc && git describe stdout: v3.6.2-27-g847c243 Executing: cd /glade/p/work/fandek/petsc && git log -1 --pretty=format:%H stdout: 847c243d8e51f0ef9779e3bcc12b6eed1fe875db Executing: cd /glade/p/work/fandek/petsc && git log -1 --pretty=format:%ci stdout: 2015-11-21 16:12:59 -0600 Executing: cd /glade/p/work/fandek/petsc && git branch stdout: * maint Defined "VERSION_GIT" to ""v3.6.2-27-g847c243"" Defined "VERSION_DATE_GIT" to ""2015-11-21 16:12:59 -0600"" Defined "VERSION_BRANCH_GIT" to ""maint"" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/glade/p/work/fandek/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.options.arch(/glade/p/work/fandek/petsc/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set =============================================================================== Warning: PETSC_ARCH from environment does not match command-line or name of script. Warning: Using from command-line or name of script: arch-linux2-cxx-debug, ignoring environment: arch-linux2-cxx-opt =============================================================================== Defined "ARCH" to ""arch-linux2-cxx-debug"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/glade/p/work/fandek/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/glade/p/work/fandek/petsc/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/glade/p/work/fandek/petsc/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/glade/p/work/fandek/petsc/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/glade/p/work/fandek/petsc/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/glade/p/work/fandek/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/glade/p/work/fandek/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1538) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1538) **** printenv **** LS_COLORS=rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45: MP_DEBUG_DISPATCHER_THROTTLE=200 NETCDF=/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5 MP_SHARED_MEMORY=yes SHELL=/bin/tcsh MP_TASK_AFFINITY=core MP_EUIDEVELOP=min MANPATH=/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/man:/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/man:/glade/apps/opt/usr/share/man:/glade/apps/opt/man:/ncar/opt/lsf/9.1/man::/opt/ibmhpc/pecurrent/ppe.man:/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/share/man MP_COREFILE_FORMAT=core_lite MP_EAGER_LIMIT=32768 VENDOR=unknown SCI_DEBUG_FANOUT=256 LMOD_FAMILY_COMPILER=intel HOSTNAME=yslogin3 SHARED_LIB=yes MP_BULK_MIN_MSG_SIZE=131072 _ModuleTable002_=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 PETSC_ARCH=arch-linux2-cxx-debug MAIL=/var/spool/mail/fandek MP_EUIDEVICE=sn_single GROUP=ncar CESMROOT=/glade/p/cesm LESSOPEN=|/usr/bin/lesspipe.sh %s LSF_BINDIR=/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin MACHTYPE=x86_64 CVS_RSH=ssh USER=fandek LSF_ENVDIR=/ncar/opt/lsf/conf QTDIR=/usr/lib64/qt-3.3 UCAS_AUTH_METHOD=token SHLVL=1 PETSC_DIR=/glade/p/work/fandek/petsc MP_INSTANCES=1 COMPILER_VERSION=12.1.5 QTLIB=/usr/lib64/qt-3.3/lib _ModuleTable001_=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 ENV=/etc/profile.d/modules.sh MP_INFOLEVEL=0 TMPDIR=/glade/scratch/fandek MODULEPATH=/glade/apps/opt/modulefiles/ys/compilers:/glade/apps/opt/modulefiles/ys/idep:/glade/apps/opt/modulefiles/ys/cdep/intel MPICH_ALLTOALL_THROTTLE=64 SSH_CONNECTION=128.138.65.214 39789 128.117.181.136 24 OMP_NUM_THREADS=1 TACC_FAMILY_COMPILER=intel LMOD_DEFAULT_MODULEPATH=/glade/apps/opt/modulefiles/ys/compilers:/glade/apps/opt/modulefiles/ys/idep INTEL_MAJOR_VERSION=12.1 INTEL_LICENSE_FILE=28518@128.117.183.213:28518@128.117.183.214:28518@128.117.183.215 REMOTEHOST=128.138.65.214 MP_PE_AFFINITY=yes MP_POLLING_INTERVAL=1000000 MP_RESD=poe LM_LICENSE_FILE=28518@128.117.183.213,28518@128.117.183.214,28518@128.117.183.215 MODULEPATH_ROOT=/glade/apps/opt/modulefiles/ys HOME=/glade/u/home/fandek MP_EUILIB=us LD_LIBRARY_PATH=/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64:/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/lib LANG=en_US LSF_SERVERDIR=/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc IMPILIBDIR=/ncar/opt/intel/12.1.0.233/impi/4.0.3.008/intel64/lib QTINC=/usr/lib64/qt-3.3/include G_BROKEN_FILENAMES=1 _ModuleTable_Sz_=5 OSTYPE=linux _ModuleTable005_=cHQvbW9kdWxlZmlsZXMveXMvY2RlcC9pbnRlbCIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZ2xhZGUvYXBwcy9vcHQvbW9kdWxlZmlsZXMveXMvY29tcGlsZXJzOi9nbGFkZS9hcHBzL29wdC9tb2R1bGVmaWxlcy95cy9pZGVwIixbInZlcnNpb24iXT0yLH0= OMP_STACKSIZE=64000K SPMCS_DIR=/glade/p/work/fandek/spmcs MP_SYNC_QP=yes HOST=yslogin3 MP_COMPILER=intel NLSPATH=/opt/ibmhpc/pecurrent/msg MP_DEBUG_SLOT_DATA_SIZE=64K SSH_TTY=/dev/pts/67 INTEL_MINOR_VERSION=5 CESMDATAROOT=/glade/p/cesmdata/cseg MP_USE_BULK_XFER=yes workhome=/glade/p/work/fandek LMOD_SYSTEM_DEFAULT_MODULES=ncarenv:ncarbinlibs:intel:ncarcompilers:netcdf HOSTTYPE=x86_64-linux SSH_CLIENT=128.138.65.214 39789 24 LOGNAME=fandek PATH=/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin:/glade/u/home/fandek/bin:.:/usr/lib64/qt-3.3/bin:/glade/apps/opt/modulefiles/ys/cmpwrappers:/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64:/glade/apps/opt/usr/bin:/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc:/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin:/usr/bin:/bin:/usr/sbin:/sbin:/usr/local/openssh/5.7p1krb/bin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/ncar/opt/hpss:/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin MP_EAGER_LIMIT_LOCAL=131072 TERM=xterm-256color LIB_NCAR=-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib LSF_LIBDIR=/ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/lib _ModuleTable003_=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 MP_PMDLOG=no MP_CLOCK_SOURCE=OS COMP_NCAR=-static-intel -Wl,-z,muldefs -Wl,-Bstatic MP_MPILIB=mpich2 PWD=/glade/p/work/fandek/petsc _ModuleTable004_=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 INC_NCAR=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include ================================================================================ TEST resetEnvCompilers from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1545) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1545) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1575) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1575) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1510) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1510) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1529) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1529) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:402) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:402) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:412) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:412) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:538) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:538) Locate a functional C compiler Executing: mpicc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: hcc --help Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicc...not found Checking for program /glade/u/home/fandek/bin/mpicc...not found Checking for program ./mpicc...not found Checking for program /usr/lib64/qt-3.3/bin/mpicc...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc...found Defined make macro "CC" to "mpicc" Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_ All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:571) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:571) Locate a functional C preprocessor Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicc...not found Checking for program /glade/u/home/fandek/bin/mpicc...not found Checking for program ./mpicc...not found Checking for program /usr/lib64/qt-3.3/bin/mpicc...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc...found Defined make macro "CPP" to "mpicc -E" Pushing language C Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 274 "/usr/include/stdlib.h" 3 # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (__const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 932 "/usr/include/stdlib.h" 3 # 943 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:612) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:612) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:652) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:652) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:764) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:764) Locate a functional Cxx compiler Executing: mpicxx --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicxx...not found Checking for program /glade/u/home/fandek/bin/mpicxx...not found Checking for program ./mpicxx...not found Checking for program /usr/lib64/qt-3.3/bin/mpicxx...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx...found Defined make macro "CXX" to "mpicxx" Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:802) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:802) Locate a functional Cxx preprocessor Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicxx...not found Checking for program /glade/u/home/fandek/bin/mpicxx...not found Checking for program ./mpicxx...not found Checking for program /usr/lib64/qt-3.3/bin/mpicxx...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx...found Defined make macro "CXXCPP" to "mpicxx -E" Pushing language Cxx Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc" 2 # 1 "/usr/include/c++/4.4.7/cstdlib" 1 3 #pragma GCC system_header # 1 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 4 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 2 3 # 1445 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1608 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1618 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1628 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1649 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1668 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1683 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 1 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 40 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/os_defines.h" 2 3 # 1688 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 2 3 # 1 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/cpu_defines.h" 1 3 # 1691 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 2 3 # 1740 "/usr/include/c++/4.4.7/x86_64-redhat-linux/bits/c++config.h" 3 # 44 "/usr/include/c++/4.4.7/cstdlib" 2 3 # 1 "/usr/include/c++/4.4.7/cstddef" 1 3 #pragma GCC system_header # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 45 "/usr/include/c++/4.4.7/cstddef" 2 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::ptrdiff_t; using ::size_t; } # 45 "/usr/include/c++/4.4.7/cstdlib" 2 3 # 67 "/usr/include/c++/4.4.7/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 # 75 "/usr/include/stdlib.h" 3 # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 56 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 94 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 } # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 } # 69 "/usr/include/c++/4.4.7/cstdlib" 2 3 # 99 "/usr/include/c++/4.4.7/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } } # 156 "/usr/include/c++/4.4.7/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; inline long long abs(long long __x) { return __x >= 0 ? __x : -__x; } using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 190 "/usr/include/c++/4.4.7/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std __attribute__ ((__visibility__ ("default"))) { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::abs; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 239 "/usr/include/c++/4.4.7/cstdlib" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:919) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:919) Locate a functional Fortran compiler Executing: mpif90 --help stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -arch generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -f[no-]exceptions enable(DEFAULT)/disable exception handling -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no]pad enable/disable(DEFAULT) changing variable and array memory layout -safe-cray-ptr Cray pointers do not alias with other variables -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -reentrancy specify whether the threaded, reentrant run-time support should be used Keywords: none (same as -noreentrancy), threaded, async -noreentrancy do not use threaded, reentrant run-time support -heap-arrays [n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. -no-heap-arrays temporary arrays are allocated on the stack (DEFAULT) -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -coarray[=shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit -coarray-num-images=n set default number of coarray images -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using SIMD directive -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -rounding-mode chopped set internal FPU rounding control to truncate -[no-]ftz enable/disable flush denormal results to zero -fpe{0|1|3} specifies program-wide behavior on floating point exceptions -fpe-all={0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets -assume ieee_fpe_flags -[no]fltconsistency specify that improved floating-point consistency should be used -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -[no]recursive compile all procedures for possible recursive execution Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -list [] specify that a listing file should be generated -list-line-len=# overrides the default line length (80) in a listing file -list-page-len=# overrides the default page length (66) in a listing file -show controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel -debug-parameters [keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as -nodebug-parameters) -nodebug-parameters do not output debug information for PARAMETERS -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -[no]d-lines compile debug statements (indicated by D in column 1) -DD compile debug statements, indicated by D in column 1. This option prevents the definition of a macro named D using the command line -Dname option (use -Dname=n syntax instead) -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used Preprocessor ------------ -D[=] define macro -nodefines, -noD specifies that any -D macros go to the preprocessor only, and not to the compiler -U remove predefined macro -allow nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -preprocess-only same as -P -[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by -save-temps. Default is -nokeep -fpp[n], -[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor -module path specify path where mod files should be placed and first location to look for mod files -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -B find libraries, headers and executables in -[no]gen-dep[=filename] generate dependency information. If no filename is specified, output to stdout -gen-depformat=keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize -assume specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as -nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as -common-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as -us), [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings -ccdefault specify default carriage control for units 6 and * keywords: default, fortran, list or none -[no]check check run-time conditions. Default is -nocheck keywords: all (same as -C), none (same as -nocheck), [no]arg_temp_created, [no]bounds (same as -CB), [no]format, [no]output_conversion, [no]pointer (same as -CA), [no]uninit (same as -CU) -common-args assume "by reference" subprogram arguments may alias one another. Same as -assume dummy_aliases -e03 issue errors for language elements that are not standard in Fortran 2003 (same as -stand f03 -warn stderrors options) -e95 issue errors for language elements that are not standard in Fortran 95 (same as -stand f95 -warn stderrors options) -e90 issue errors for language elements that are not standard in Fortran 90 (same as -stand f90 -warn stderrors options) -[no]extend-source [] specify rightmost column for fixed form sources keywords: 72 (same as -noextend-source and -72), 80 (same as -80), 132 (same as -132. Default if you specify -extend-source without a keyword.) -fixed specify source files are in fixed format. Same as -FI -nofixed indicates free format -free specify source files are in free format. Same as -FR -nofree indicates fixed format -[no]mixed-str-len-arg indicate whether hidden lengths are passed after their character argument or after all arguments. -names specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase -[no]pad-source make compiler acknowledge blanks at the end of a line -stand [] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as -std90), f95(same as -std95), f03(same as -std95), none (same as -nostand) -standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by -standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_mod_proc_name, noold_ldout_format -syntax-only perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- -w disable all warnings -W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as -warn general) -warn specifies the level of warning messages issued keywords: all, none (same as -nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage -nowarn suppress all warning messages -WB turn a compile-time bounds check into a warning -Winline enable inline diagnostics -[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure -[no]gen-interfaces[:[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved -error-limit specify the maximum number of error-level or fatal-level compiler errors allowed -noerror-limit set no maximum number on error-level or fatal-level error messages -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted Miscellaneous ------------- -[no]logo display compiler version information. /nologo disables the output -V display compiler version information -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -what display detailed compiler version information -watch tells the driver to output processing information keywords: all, none (same as -nowatch), [no]source, [no]cmd (same as -v) -nowatch suppress processing information output (DEFAULT) -Tf compile file as Fortran source -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -i{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 -integer-size specifies the default size of integer and logical variables size: 16, 32, 64 -r{8|16} set default size of real to 8 or 16 bytes -real-size specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 -autodouble same as -real-size 64 or -r8 -double-size defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 -[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision -[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants -auto make all local variables AUTOMATIC -auto-scalar make scalar local variables AUTOMATIC (DEFAULT) -save save all variables (static allocation) (same as -noauto, opposite of -auto) -[no]zero enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized -dyncom make given common blocks dynamically-allocated -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -[no]align analyze and reorder memory layout for variables and arrays -align specify how data items are aligned keywords: all (same as -align), none (same as -noalign), [no]commons, [no]dcommons, [no]qcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, [no]records, [no]sequence -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -convert specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -fpscomp specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as -nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals -nofpscomp no specific level of compatibility with Fortran PowerStation -f66, -66 allow extensions that enhance FORTRAN-66 compatibility -f77rtl specify that the Fortran 77 specific run-time support should be used -nof77rtl disables -vms enable VMS I/O statement extensions -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -nofor-main do not link against Fortran main object. Used when linking Fortran objects with C main program -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -threads specify that multi-threaded libraries should be linked against -nothreads disables multi-threaded libraries Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -fwritable-strings use -assume writeable-strings -1, -66, -onetrip use -f66 -Vaxlib No replacement -automatic use -auto -cm use -warn nousage -dps use -altparam -lowercase use -names lowercase -uppercase use -names uppercase -nus use -assume nounderscore -pthread use -reentrancy threaded -w90, -w95 No replacement -tune use -x -arch pn* use -arch -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpif90...not found Checking for program /glade/u/home/fandek/bin/mpif90...not found Checking for program ./mpif90...not found Checking for program /usr/lib64/qt-3.3/bin/mpif90...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90...found Defined make macro "FC" to "mpif90" Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:940) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:940) Make sure fortran comment "!" works Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1003) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1003) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Trying C compiler flag -PIC Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -PIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: icc: command line warning #10006: ignoring unknown option '-PIC' Rejecting C linker flag -PIC due to icc: command line warning #10006: ignoring unknown option '-PIC' Rejected C compiler flag -PIC because linker cannot handle it Trying C compiler flag -fPIC Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx Trying Cxx compiler flag -PIC Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -PIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: icpc: command line warning #10006: ignoring unknown option '-PIC' Rejecting Cxx linker flag -PIC due to icpc: command line warning #10006: ignoring unknown option '-PIC' Rejected Cxx compiler flag -PIC because linker cannot handle it Trying Cxx compiler flag -fPIC Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Trying FC compiler flag -PIC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -PIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Possible ERROR while running linker: stderr: ifort: command line warning #10006: ignoring unknown option '-PIC' Rejecting FC linker flag -PIC due to ifort: command line warning #10006: ignoring unknown option '-PIC' Rejected FC compiler flag -PIC because linker cannot handle it Trying FC compiler flag -fPIC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid FC linker flag -fPIC Adding FC compiler flag -fPIC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1036) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) ================================================================================ TEST checkArchiver from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1135) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1135) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/ar...not found Checking for program /glade/u/home/fandek/bin/ar...not found Checking for program ./ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/ar...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ar...not found Checking for program /glade/apps/opt/usr/bin/ar...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/ar...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/ranlib...not found Checking for program /glade/u/home/fandek/bin/ranlib...not found Checking for program ./ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/ranlib...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ranlib...not found Checking for program /glade/apps/opt/usr/bin/ranlib...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/ranlib...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconf1.a /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconf1.a Possible ERROR while running ranlib: exit code 256 stderr: /usr/bin/ranlib: '-c': No such file Ranlib is not functional with your archiver. Try --with-ranlib=true if ranlib is unnecessary. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Executing: ar -V stdout: GNU ar version 2.20.51.0.2-5.36.el6 20100205 Copyright 2009 Free Software Foundation, Inc. This program is free software; you may redistribute it under the terms of the GNU General Public License version 3 or (at your option) any later version. This program has absolutely no warranty. Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/ar...not found Checking for program /glade/u/home/fandek/bin/ar...not found Checking for program ./ar...not found Checking for program /usr/lib64/qt-3.3/bin/ar...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/ar...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ar...not found Checking for program /glade/apps/opt/usr/bin/ar...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/ar...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/ranlib...not found Checking for program /glade/u/home/fandek/bin/ranlib...not found Checking for program ./ranlib...not found Checking for program /usr/lib64/qt-3.3/bin/ranlib...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/ranlib...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ranlib...not found Checking for program /glade/apps/opt/usr/bin/ranlib...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/ranlib...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib" Executing: /usr/bin/ar cr /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconf1.a /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conf1.o Executing: /usr/bin/ranlib /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconf1.a Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -L/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1246) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1246) Check that the linker can produce shared libraries Executing: uname -s stdout: Linux Checking shared linker mpicxx using flags ['-shared'] Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicxx...not found Checking for program /glade/u/home/fandek/bin/mpicxx...not found Checking for program ./mpicxx...not found Checking for program /usr/lib64/qt-3.3/bin/mpicxx...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx...found Defined make macro "LD_SHARED" to "mpicxx" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -shared -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid C linker flag -shared Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -L/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -lconftest Using shared linker mpicxx with flags ['-shared'] and library extension so Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1324) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1324) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Linux Executing: mpicc -V Trying C linker flag -Wl,-rpath, Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -Wl,-rpath,/glade/p/work/fandek/petsc -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/glade/p/work/fandek/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Linux Executing: mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -Wl,-rpath,/glade/p/work/fandek/petsc /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/glade/p/work/fandek/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Linux Executing: mpicc -V Trying FC linker flag -Wl,-rpath, Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -Wl,-rpath,/glade/p/work/fandek/petsc -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/glade/p/work/fandek/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1359) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1359) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1408) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1408) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.headers Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/dlfcn.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 51 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 79 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 187 "/usr/include/dlfcn.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.libraries Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Linux Checking dynamic linker mpicxx using flags ['-shared'] Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mpicxx...not found Checking for program /glade/u/home/fandek/bin/mpicxx...not found Checking for program ./mpicxx...not found Checking for program /usr/lib64/qt-3.3/bin/mpicxx...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx...found Defined make macro "DYNAMICLINKER" to "mpicxx" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -shared -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl Valid C linker flag -shared Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconftest.so", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl Using dynamic linker mpicxx with flags ['-shared'] and library extension so ================================================================================ TEST output from config.setCompilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/setCompilers.py:1454) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1454) Output module data as defines and substitutions Substituting "CC" with "mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-shared" Executing: uname -s stdout: Linux ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/glade/p/work/fandek/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/glade/p/work/fandek/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_linux" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).so.$(2)" Defined make macro "SL_LINKER_FUNCTION" to "-shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2))" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/glade/p/work/fandek/petsc/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/glade/p/work/fandek/petsc/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/glade/p/work/fandek/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined "USE_64BIT_INDICES" to "1" Checking for functions [__floatdidf] in library ['-lgcc_s.1'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char __floatdidf(); static void _check___floatdidf() { __floatdidf(); } int main() { _check___floatdidf();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lgcc_s.1 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lgcc_s.1 Popping language C Defined make macro "PETSC_INDEX_SIZE" to "64" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Pushing language C Executing: mpicc --version stdout: icc (ICC) 12.1.5 20120612 Copyright (C) 1985-2012 Intel Corporation. All rights reserved. Executing: mpicc -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPICC_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying C compiler flag -wd1572 Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -wd1572 /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -wd1572 Executing: mpicc -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPICC_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying C compiler flag -g Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -g Popping language C Pushing language Cxx Executing: mpicxx --version stdout: icpc (ICC) 12.1.5 20120612 Copyright (C) 1985-2012 Intel Corporation. All rights reserved. Executing: mpicxx -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPICXX_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying Cxx compiler flag -wd1572 Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -wd1572 -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -wd1572 Executing: mpicxx -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPICXX_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc --help stdout: Intel(R) C++ Compiler Help ========================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: icc [options] file1 [file2 ...] icpc [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a C/C++ source (.C .c .cc .cpp .cxx .c++ .i .ii), assembly (.s .S), object (.o), static library (.a), or other linkable file The icpc command uses the same compiler options as the icc command. Invoking the compiler using icpc compiles .c and .i files as C++. Invoking the compiler using icc compiles .c and .i files as C. Using icpc always links in C++ libraries. Using icc only links in C++ libraries if C++ source is provided on the command line. Commonly used options may be placed in the icc .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -f[no-]builtin disable inline expansion of intrinsic functions -fno-builtin- disable the intrinsic -ffunction-sections separate functions for the linker (COMDAT) -fdata-sections place each data item into its own section -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -fnon-call-exceptions enable/disable(DEFAULT) code that allows exceptions from trapping instructions to be caught -regcall make __regcall the default calling convention -hotpatch[=n] generate padding bytes for function entries to enable image hotpatching. If specified, use 'n' as the padding. -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]ansi-alias-check enable(DEFAULT)/disable ANSI alias checking when using -ansi-alias -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -[no-]alias-const enable/disable(DEFAULT) a heuristic stating that if two arguments to a function have pointer type, a pointer to const does not alias a pointer to non-const. Also known as the input/output buffer rule, it assumes that input and output buffer arguments do not overlap. -fargument-alias arguments may alias each other and may alias global storage -fargument-noalias arguments do not alias each other but may alias global storage -fargument-noalias-global arguments do not alias each other and do not alias global storage -ftls-model= change thread-local storage model, where can be the following: global-dynamic, local-dynamic, initial-exec or local-exec -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-calloc enable/disable(DEFAULT) calls to fast calloc function -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -ffreestanding compile in a freestanding environment where the standard library may not be present -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -ipp[=] link some or all of the Intel(R) Integrated Performance Primitives (Intel(R) IPP) libraries and bring in the associated headers common - link using the main libraries set. This is the default value when -ipp is specified crypto - link using the main libraries set and the crypto library gen - link using the main libraries set and the fixed size generated functions library nonpic - link using the version of the libraries that do not have position independent code nonpic_crypto - link using the crypto library and the version of the libraries that do not have position independent code -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -tbb link to the Intel(R) Threading Building Blocks (Intel(R) TBB) libraries and bring in the associated headers -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -[no-]use-intel-optimized-headers take advantage of the optimized header files -cilk-serialize run a Cilk program as a C/C++ serialized program -[no-]intel-extensions enable(DEFAULT)/disable C/C++ language extensions such as array notation, Intel(R) Cilk(TM) Plus language extensions, and support for decimal floating-point types. -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using simd pragma -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-task choose which OpenMP tasking model to support omp - support OpenMP 3.0 tasking (DEFAULT) intel - support Intel taskqueuing -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access double - rounds intermediates in 53-bit (double) precision extended - rounds intermediates in 64-bit (extended) precision -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -[no-]ftz enable/disable flush denormal results to zero -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -fp-trap=[,,...] control floating point traps at program start. can be of the following values [no]divzero - [Do not] trap on division by zero [no]inexact - [Do not] trap on inexact result [no]invalid - [Do not] trap on invalid operation [no]overflow - [Do not] trap on overflow [no]underflow - [Do not] trap on underflow [no]denormal - [Do not] trap on denormal all - enable trap on all of the above none - trap on none of the above common - trap on most commonly used IEEE traps (invalid, division by zero, overflow) -fp-trap-all=[,,...] control floating point traps in every routine. can be of the values specified in -fp-trap Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with __inline, and perform C++ inlining n=2 inline any function, at the compiler's discretion -f[no-]inline inline functions declared with __inline, and perform C++ inlining -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -fgnu89-inline use C89 semantics for "inline" functions when in C99 mode -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -fasm-blocks enables the use of blocks and entire functions of assembly code within a C or C++ file -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel [no]expr-source-pos -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used -pch-create create precompiled header file -pch-use use precompiled header file -pch enable automatic precompiled header file creation/usage -pch-dir name precompiled header directory Preprocessor ------------ -A[] create an assertion having value -C do not strip comments -D[=] define macro -U remove predefined macro -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -nostdinc++ remove standard C++ directories from include file search path -iprefix use with -iwithprefix as a prefix -iwithprefix append to the prefix passed in by -iprefix and put it on the include search path at the end of the include directories -iwithprefixbefore similar to -iwithprefix except the include directory is placed in the same place as -I command line include directories -iquote add directory to the front of the include file search path for files included with quotes, but not brackets -imacros treat as an #include file, but throw away all preprocessing while macros defined remain defined -H print include file order -B find libraries, headers and executables in -M generate makefile dependency information -MM similar to -M, but do not include system header files -MG similar to -M, but treat missing header files as generated files -MD preprocess and compile, generating output file containing dependency information ending with extension .d -MMD similar to -MD, but do not include system header files -MF generate makefile dependency information in file (must specify -M or -MM) -MP add a phony target for each dependency -MT change the default target rule for dependency generation -MQ same as -MT, but quotes special Make characters -dM output macro definitions in effect after preprocessing (use with -E) -dD same as -dM, but output #define directives in preprocessed source -dN same as -dD, but #define directives contain only macro names -gcc Predefine the "__GNUC__", "__GNUC_MINOR__", and "__GNUC_PATCHLEVEL__" macros (DEFAULT) -no-gcc Do not predefine GNUC macros listed in -gcc mode. Warning: can prevent correct system header compilation, see -gcc-sys -gcc-sys same as -no-gcc, except that the GNU macros are defined only while preprocessing the system include headers -no-icc do not predefine the "__ICC" and "__INTEL_COMPILER" macros. Warning: can prevent correct Intel header compilation -pragma-optimization-level=[Intel|GCC] process #pragma optimize using Intel (DEFAULT) or GCC syntax Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -std= enable language support for , as described below c99 enable C99 support for C programs c++0x enable preliminary support for some C++0x features -x all source files found subsequent to -x will be recognized as one of the following types: c - C source file c++ - C++ source file c-header - C header file cpp-output - C pre-processed file c++-cpp-output - C++ pre-processed file assembler - assembly file assembler-with-cpp - assembly file that needs to be preprocessed none - revert to original file extension -ansi equivalent to GNU -ansi -strict-ansi strict ANSI conformance dialect -Zp[n] specify alignment constraint for structures where n=1,2,4,8,16. 16 is the default -fsyntax-only perform syntax and semantic checking only (no object file produced) -trigraphs support ISO C trigraphs (enabled in -ansi mode) -fpermissive allows extensions for some non-conformant code -funsigned-char change default char type to unsigned -fshort-enums allocate as many bytes as needed for enumerated types -f[no-]unsigned-bitfields change default bitfield type to unsigned -fno-rtti disable RTTI support -fno-implicit-templates never emit code for non-inline templates which are instantiated implicitly; only emit code for explicit instantiations -fno-implicit-inline-templates do not emit code for implicit instantiations of inline templates -ftemplate-depth-[n] control the depth in which recursive templates are expanded -[no]align analyze and reorder memory layout for variables and arrays -[no-]restrict enable/disable the 'restrict' keyword for disambiguating pointers -[no-]early-template-check enable/disable (DEFAULT) semantic checking of function template prototypes (before instantiation). Requires -gcc-version=340 or later -[no-]check-uninit check for uninitialized variables -help-pragma output supported pragmas and their usage syntax -ffriend-injection inject friend functions into the enclosing namespace. Use -fno-friend-injection to disable Compiler Diagnostics -------------------- -w disable all warnings -w control diagnostics n = 0 display errors (same as -w) n = 1 display warnings and errors (DEFAULT) n = 2 display remarks, warnings and errors -Wbrief print brief one-line diagnostics -Werror force warnings to be reported as errors -Werror-all force warnings and currently enabled remarks to be reported as errors -Wall enable all warnings -Wremarks enable all remarks and comments -Wcheck enable more strict diagnostics -Weffc++ enable effective C++ diagnostic warnings -wo[,,...] issue diagnostics L1 through LN only once -W[no-]fatal-errors ends compilation after the first error encountered -W[no-]format enable argument checking for calls to printf, scanf, etc -W[no-]format-security warn for uses of format strings and specifiers in printf, scanf, etc that may introduce security problems -W[no-]missing-declarations warn for global functions and variables without prior declaration -W[no-]missing-prototypes warn for missing prototypes -W[no-]strict-aliasing warn for code that might violate the optimizer's strict aliasing rules. Warnings are issued only when using -fstrict-aliasing or -ansi-alias. -W[no-]strict-prototypes warn for functions declared or defined without specified argument types -W[no-]pointer-arith warn for questionable pointer arithmetic -W[no-]uninitialized warn if a variable is used before being initialized -Winline enable inline diagnostics -W[no-]deprecated print warnings related to deprecated features -W[no-]abi warn if generated code is not C++ ABI compliant -Wcontext-limit= set maximum number of template instantiation contexts shown in diagnostic -Wcast-qual warn if cast is used to override pointer type qualifier -W[no-]unused-function warn if declared function is not used -W[no-]unknown-pragmas warn if an unknown #pragma directive is used (DEFAULT) -W[no-]main warn if return type of main is not expected -W[no-]comment[s] warn when comment -W[no-]conversion warn for implicit conversions that may alter a value -W[no-]return-type warn when a function uses the default int return type and warn when a return statement is used in a void function -W[no-]extra-tokens warn about extra tokens after prepreprocessor directives -W[no-]pragma-once warn about the use of #pragma once -W[no-]shadow warn when a variable declaration hides a previous declaration -Woverloaded-virtual warn when a function declaration hides virtual functions from a base class -W[no-]trigraphs warn about the recognition and conversion of trigraphs -W[no-]multichar warn if a multicharacter constant ('ABC') is used -W[no-]overflow warn for operations that could result in integer overflow -Wwrite-strings Issues a diagnostic message if const char * is converted to (non-const) char *. -W[no-]sign-compare warn for comparisons between signed and unsigned values that could produce unintended results after sign conversion -Wp64 print diagnostics for 64-bit porting -W[no-]shorten-64-to-32 warn for values implicitly converted from a 64-bit to a 32-bit type. Similar to -Wp64 -[no]traceback specify whether the compiler generates data to allow for source file traceback information at runtime (only to be used when linking with Fortran programs) -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings thread - enable diagnostics to aid in thread-enabling source port-win - enable diagnostics for GNU extensions that may cause errors when porting to Windows warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted -diag-once [,,...] issue diagnostics v1 through vN only once Miscellaneous ------------- -V display compiler version information -dumpversion display the compiler version number only -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -[no-]multibyte-chars provide support for multi-byte characters -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -freg-struct-return return struct and union values in registers when possible -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -auto-ilp32 specify that the application cannot exceed a 32-bit address space (-ipo[n] required) -auto-p32 instructs the compiler to analyze the program to determine if there are 64-bit pointers that can be safely shrunk to 32-bit pointers. (-ipo required) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility -fabi-version= directs the compiler to select a specific ABI implementation 0 - most recent ABI implementation 1 - g++ 3.2 compatible ABI implementation 2 - most conformant ABI implementation Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -pthread use POSIX* thread library for multithreading support -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -u pretend the is undefined -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -A- use -U -c99 use -std=c99 -fwritable-strings no replacement -Kc++ use -x c++ -wn use -diag-error-limit -wd use -diag-disable -we use -diag-error -ww use -diag-warning -wr use -diag-remark -wo use -diag-once -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying Cxx compiler flag -g Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -g Popping language Cxx Pushing language FC Executing: mpif90 --version stdout: ifort (IFORT) 12.1.5 20120612 Copyright (C) 1985-2012 Intel Corporation. All rights reserved. Executing: mpif90 -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPIFC_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort --help stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -arch generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -f[no-]exceptions enable(DEFAULT)/disable exception handling -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no]pad enable/disable(DEFAULT) changing variable and array memory layout -safe-cray-ptr Cray pointers do not alias with other variables -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -reentrancy specify whether the threaded, reentrant run-time support should be used Keywords: none (same as -noreentrancy), threaded, async -noreentrancy do not use threaded, reentrant run-time support -heap-arrays [n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. -no-heap-arrays temporary arrays are allocated on the stack (DEFAULT) -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -coarray[=shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit -coarray-num-images=n set default number of coarray images -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using SIMD directive -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -rounding-mode chopped set internal FPU rounding control to truncate -[no-]ftz enable/disable flush denormal results to zero -fpe{0|1|3} specifies program-wide behavior on floating point exceptions -fpe-all={0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets -assume ieee_fpe_flags -[no]fltconsistency specify that improved floating-point consistency should be used -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -[no]recursive compile all procedures for possible recursive execution Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -list [] specify that a listing file should be generated -list-line-len=# overrides the default line length (80) in a listing file -list-page-len=# overrides the default page length (66) in a listing file -show controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel -debug-parameters [keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as -nodebug-parameters) -nodebug-parameters do not output debug information for PARAMETERS -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -[no]d-lines compile debug statements (indicated by D in column 1) -DD compile debug statements, indicated by D in column 1. This option prevents the definition of a macro named D using the command line -Dname option (use -Dname=n syntax instead) -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used Preprocessor ------------ -D[=] define macro -nodefines, -noD specifies that any -D macros go to the preprocessor only, and not to the compiler -U remove predefined macro -allow nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -preprocess-only same as -P -[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by -save-temps. Default is -nokeep -fpp[n], -[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor -module path specify path where mod files should be placed and first location to look for mod files -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -B find libraries, headers and executables in -[no]gen-dep[=filename] generate dependency information. If no filename is specified, output to stdout -gen-depformat=keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize -assume specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as -nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as -common-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as -us), [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings -ccdefault specify default carriage control for units 6 and * keywords: default, fortran, list or none -[no]check check run-time conditions. Default is -nocheck keywords: all (same as -C), none (same as -nocheck), [no]arg_temp_created, [no]bounds (same as -CB), [no]format, [no]output_conversion, [no]pointer (same as -CA), [no]uninit (same as -CU) -common-args assume "by reference" subprogram arguments may alias one another. Same as -assume dummy_aliases -e03 issue errors for language elements that are not standard in Fortran 2003 (same as -stand f03 -warn stderrors options) -e95 issue errors for language elements that are not standard in Fortran 95 (same as -stand f95 -warn stderrors options) -e90 issue errors for language elements that are not standard in Fortran 90 (same as -stand f90 -warn stderrors options) -[no]extend-source [] specify rightmost column for fixed form sources keywords: 72 (same as -noextend-source and -72), 80 (same as -80), 132 (same as -132. Default if you specify -extend-source without a keyword.) -fixed specify source files are in fixed format. Same as -FI -nofixed indicates free format -free specify source files are in free format. Same as -FR -nofree indicates fixed format -[no]mixed-str-len-arg indicate whether hidden lengths are passed after their character argument or after all arguments. -names specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase -[no]pad-source make compiler acknowledge blanks at the end of a line -stand [] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as -std90), f95(same as -std95), f03(same as -std95), none (same as -nostand) -standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by -standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_mod_proc_name, noold_ldout_format -syntax-only perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- -w disable all warnings -W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as -warn general) -warn specifies the level of warning messages issued keywords: all, none (same as -nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage -nowarn suppress all warning messages -WB turn a compile-time bounds check into a warning -Winline enable inline diagnostics -[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure -[no]gen-interfaces[:[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved -error-limit specify the maximum number of error-level or fatal-level compiler errors allowed -noerror-limit set no maximum number on error-level or fatal-level error messages -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted Miscellaneous ------------- -[no]logo display compiler version information. /nologo disables the output -V display compiler version information -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -what display detailed compiler version information -watch tells the driver to output processing information keywords: all, none (same as -nowatch), [no]source, [no]cmd (same as -v) -nowatch suppress processing information output (DEFAULT) -Tf compile file as Fortran source -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -i{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 -integer-size specifies the default size of integer and logical variables size: 16, 32, 64 -r{8|16} set default size of real to 8 or 16 bytes -real-size specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 -autodouble same as -real-size 64 or -r8 -double-size defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 -[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision -[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants -auto make all local variables AUTOMATIC -auto-scalar make scalar local variables AUTOMATIC (DEFAULT) -save save all variables (static allocation) (same as -noauto, opposite of -auto) -[no]zero enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized -dyncom make given common blocks dynamically-allocated -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -[no]align analyze and reorder memory layout for variables and arrays -align specify how data items are aligned keywords: all (same as -align), none (same as -noalign), [no]commons, [no]dcommons, [no]qcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, [no]records, [no]sequence -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -convert specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -fpscomp specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as -nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals -nofpscomp no specific level of compatibility with Fortran PowerStation -f66, -66 allow extensions that enhance FORTRAN-66 compatibility -f77rtl specify that the Fortran 77 specific run-time support should be used -nof77rtl disables -vms enable VMS I/O statement extensions -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -nofor-main do not link against Fortran main object. Used when linking Fortran objects with C main program -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -threads specify that multi-threaded libraries should be linked against -nothreads disables multi-threaded libraries Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -fwritable-strings use -assume writeable-strings -1, -66, -onetrip use -f66 -Vaxlib No replacement -automatic use -auto -cm use -warn nousage -dps use -altparam -lowercase use -names lowercase -uppercase use -names uppercase -nus use -assume nounderscore -pthread use -reentrancy threaded -w90, -w95 No replacement -tune use -x -arch pn* use -arch -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort --help stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -arch generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -f[no-]exceptions enable(DEFAULT)/disable exception handling -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no]pad enable/disable(DEFAULT) changing variable and array memory layout -safe-cray-ptr Cray pointers do not alias with other variables -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -reentrancy specify whether the threaded, reentrant run-time support should be used Keywords: none (same as -noreentrancy), threaded, async -noreentrancy do not use threaded, reentrant run-time support -heap-arrays [n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. -no-heap-arrays temporary arrays are allocated on the stack (DEFAULT) -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -coarray[=shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit -coarray-num-images=n set default number of coarray images -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using SIMD directive -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -rounding-mode chopped set internal FPU rounding control to truncate -[no-]ftz enable/disable flush denormal results to zero -fpe{0|1|3} specifies program-wide behavior on floating point exceptions -fpe-all={0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets -assume ieee_fpe_flags -[no]fltconsistency specify that improved floating-point consistency should be used -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -[no]recursive compile all procedures for possible recursive execution Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -list [] specify that a listing file should be generated -list-line-len=# overrides the default line length (80) in a listing file -list-page-len=# overrides the default page length (66) in a listing file -show controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel -debug-parameters [keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as -nodebug-parameters) -nodebug-parameters do not output debug information for PARAMETERS -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -[no]d-lines compile debug statements (indicated by D in column 1) -DD compile debug statements, indicated by D in column 1. This option prevents the definition of a macro named D using the command line -Dname option (use -Dname=n syntax instead) -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used Preprocessor ------------ -D[=] define macro -nodefines, -noD specifies that any -D macros go to the preprocessor only, and not to the compiler -U remove predefined macro -allow nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -preprocess-only same as -P -[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by -save-temps. Default is -nokeep -fpp[n], -[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor -module path specify path where mod files should be placed and first location to look for mod files -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -B find libraries, headers and executables in -[no]gen-dep[=filename] generate dependency information. If no filename is specified, output to stdout -gen-depformat=keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize -assume specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as -nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as -common-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as -us), [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings -ccdefault specify default carriage control for units 6 and * keywords: default, fortran, list or none -[no]check check run-time conditions. Default is -nocheck keywords: all (same as -C), none (same as -nocheck), [no]arg_temp_created, [no]bounds (same as -CB), [no]format, [no]output_conversion, [no]pointer (same as -CA), [no]uninit (same as -CU) -common-args assume "by reference" subprogram arguments may alias one another. Same as -assume dummy_aliases -e03 issue errors for language elements that are not standard in Fortran 2003 (same as -stand f03 -warn stderrors options) -e95 issue errors for language elements that are not standard in Fortran 95 (same as -stand f95 -warn stderrors options) -e90 issue errors for language elements that are not standard in Fortran 90 (same as -stand f90 -warn stderrors options) -[no]extend-source [] specify rightmost column for fixed form sources keywords: 72 (same as -noextend-source and -72), 80 (same as -80), 132 (same as -132. Default if you specify -extend-source without a keyword.) -fixed specify source files are in fixed format. Same as -FI -nofixed indicates free format -free specify source files are in free format. Same as -FR -nofree indicates fixed format -[no]mixed-str-len-arg indicate whether hidden lengths are passed after their character argument or after all arguments. -names specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase -[no]pad-source make compiler acknowledge blanks at the end of a line -stand [] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as -std90), f95(same as -std95), f03(same as -std95), none (same as -nostand) -standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by -standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_mod_proc_name, noold_ldout_format -syntax-only perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- -w disable all warnings -W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as -warn general) -warn specifies the level of warning messages issued keywords: all, none (same as -nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage -nowarn suppress all warning messages -WB turn a compile-time bounds check into a warning -Winline enable inline diagnostics -[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure -[no]gen-interfaces[:[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved -error-limit specify the maximum number of error-level or fatal-level compiler errors allowed -noerror-limit set no maximum number on error-level or fatal-level error messages -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted Miscellaneous ------------- -[no]logo display compiler version information. /nologo disables the output -V display compiler version information -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -what display detailed compiler version information -watch tells the driver to output processing information keywords: all, none (same as -nowatch), [no]source, [no]cmd (same as -v) -nowatch suppress processing information output (DEFAULT) -Tf compile file as Fortran source -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -i{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 -integer-size specifies the default size of integer and logical variables size: 16, 32, 64 -r{8|16} set default size of real to 8 or 16 bytes -real-size specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 -autodouble same as -real-size 64 or -r8 -double-size defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 -[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision -[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants -auto make all local variables AUTOMATIC -auto-scalar make scalar local variables AUTOMATIC (DEFAULT) -save save all variables (static allocation) (same as -noauto, opposite of -auto) -[no]zero enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized -dyncom make given common blocks dynamically-allocated -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -[no]align analyze and reorder memory layout for variables and arrays -align specify how data items are aligned keywords: all (same as -align), none (same as -noalign), [no]commons, [no]dcommons, [no]qcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, [no]records, [no]sequence -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -convert specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -fpscomp specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as -nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals -nofpscomp no specific level of compatibility with Fortran PowerStation -f66, -66 allow extensions that enhance FORTRAN-66 compatibility -f77rtl specify that the Fortran 77 specific run-time support should be used -nof77rtl disables -vms enable VMS I/O statement extensions -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -nofor-main do not link against Fortran main object. Used when linking Fortran objects with C main program -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -threads specify that multi-threaded libraries should be linked against -nothreads disables multi-threaded libraries Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -fwritable-strings use -assume writeable-strings -1, -66, -onetrip use -f66 -Vaxlib No replacement -automatic use -auto -cm use -warn nousage -dps use -altparam -lowercase use -names lowercase -uppercase use -names uppercase -nus use -assume nounderscore -pthread use -reentrancy threaded -w90, -w95 No replacement -tune use -x -arch pn* use -arch -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Executing: mpif90 -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Defined make macro "MPIFC_SHOW" to "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" Executing: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort --help stdout: Intel(R) Fortran Compiler Help ============================== Intel(R) Compiler includes compiler options that optimize for instruction sets that are available in both Intel(R) and non-Intel microprocessors, but may perform additional optimizations for Intel microprocessors than for non-Intel microprocessors. In addition, certain compiler options for Intel(R) Compiler are reserved for Intel microprocessors. For a detailed description of these compiler options, including the instructions they implicate, please refer to "Intel(R) Compiler User and Reference Guides > Compiler Options." usage: ifort [options] file1 [file2 ...] where options represents zero or more compiler options fileN is a Fortran source (.f .for .ftn .f90 .fpp .F .FOR .F90 .i .i90), assembly (.s .S), object (.o), static library (.a), or other linkable file Commonly used options may be placed in the ifort .cfg file. Compiler Option List -------------------- Optimization ------------ -O1 optimize for maximum speed, but disable some optimizations which increase code size for a small speed benefit -O2 optimize for maximum speed (DEFAULT) -O3 optimize for maximum speed and enable more aggressive optimizations that may not improve performance on some programs -O same as -O2 -Os enable speed optimizations, but disable some optimizations which increase code size for small speed benefit -O0 disable optimizations -fast enable -xHOST -O3 -ipo -no-prec-div -static options set by -fast cannot be overridden with the exception of -xHOST, list options separately to change behavior -Ofast enable -O3 -no-prec-div optimizations -fno-alias assume no aliasing in program -fno-fnalias assume no aliasing within functions, but assume aliasing across calls -nolib-inline disable inline expansion of intrinsic functions Code Generation --------------- -x generate specialized code to run exclusively on processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. Optimizes for the Intel NetBurst(R) microarchitecture. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the enhanced Pentium(R) M processor microarchitecture and Intel NetBurst(R) microarchitecture. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Core(TM) microarchitecture. SSE4.1 May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator instructions for Intel processors. May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for Intel(R) 45nm Hi-k next generation Intel Core(TM) microarchitecture. SSE4.2 May generate Intel(R) SSE4 Efficient Accelerated String and Text Processing instructions supported by Intel(R) Core(TM) i7 processors. May generate Intel(R) SSE4 Vectorizing Compiler and Media Accelerator, Intel(R) SSSE3, SSE3, SSE2, and SSE instructions and it may optimize for the Intel(R) Core(TM) processor family. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. Optimizes for a future Intel processor. SSSE3_ATOM May generate MOVBE instructions for Intel processors, depending on the setting of option -minstruction. May also generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. Optimizes for the Intel(R) Atom(TM) processor and Intel(R) Centrino(R) Atom(TM) Processor Technology. -xHost generate instructions for the highest instruction set and processor available on the compilation host machine -ax[,,...] generate code specialized for processors specified by while also generating generic IA-32 instructions. includes one or more of the following: SSE2 May generate Intel(R) SSE2 and SSE instructions for Intel processors. SSE3 May generate Intel(R) SSE3, SSE2, and SSE instructions for Intel processors. SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel processors. AVX May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX2 May generate Intel(R) Advanced Vector Extensions 2 (Intel(R) AVX2), Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. CORE-AVX-I May generate Intel(R) Advanced Vector Extensions (Intel(R) AVX), including instructions in Intel(R) Core 2(TM) processors in process technology smaller than 32nm, Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions for Intel(R) processors. -arch generate specialized code to optimize for processors indicated by as described below SSE2 May generate Intel(R) SSE2 and SSE instructions SSE3 May generate Intel(R) SSE3, SSE2 and SSE instructions SSSE3 May generate Intel(R) SSSE3, SSE3, SSE2 and SSE instructions SSE4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions SSE4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions AVX May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2 and SSE instructions -mcpu= same as -mtune= -mtune= optimize for a specific pentium3 - optimize for Pentium(R) III processors pentium4 - optimize for Pentium(R) 4 processor (DEFAULT) -march= generate code exclusively for a given pentium3 - streaming SIMD extensions pentium4 - Pentium(R) 4 New Instructions -msse3 May generate Intel(R) SSE3, SSE2, and SSE instructions -mssse3 May generate Intel(R) SSSE3, SSE3, SSE2, and SSE instructions -msse4 Enable -msse4.2 -msse4.1 May generate Intel(R) SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -msse4.2 May generate Intel(R) SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -mavx May generate Intel(R) AVX, SSE4.2, SSE4.1, SSSE3, SSE3, SSE2, and SSE instructions -masm= generate asm instructions specified by , which may be att (DEFAULT) or intel -minstruction= Refine instruction set output for the selected target processor [no]movbe - Do/do not generate MOVBE instructions with SSSE3_ATOM (requires -xSSSE3_ATOM) -f[no-]omit-frame-pointer enable(DEFAULT)/disable use of EBP as general purpose register. -fno-omit-frame-pointer replaces -fp -f[no-]exceptions enable/disable(DEFAULT) C++ exception handling table generation -f[no-]exceptions enable(DEFAULT)/disable exception handling -fasynchronous-unwind-tables determines whether unwind information is precise at an instruction boundary or at a call boundary. -fno-asynchronous-unwind-tables is the default for IA-32 architecture. Interprocedural Optimization (IPO) ---------------------------------- -[no-]ip enable(DEFAULT)/disable single-file IP optimization within files -ipo[n] enable multi-file IP optimization between files -ipo-c generate a multi-file object file (ipo_out.o) -ipo-S generate a multi-file assembly file (ipo_out.S) -ip-no-inlining disable full and partial inlining -ip-no-pinlining disable partial inlining -ipo-separate create one object file for every source file (overrides -ipo[n]) -ipo-jobs specify the number of jobs to be executed simultaneously during the IPO link phase Advanced Optimizations ---------------------- -unroll[n] set maximum number of times to unroll loops. Omit n to use default heuristics. Use n=0 to disable the loop unroller -[no-]unroll-aggressive enables more aggressive unrolling heuristics -funroll-loops unroll loops based on default heuristics -opt-args-in-regs= Determines whether calls to routines are optimized by passing arguments in registers instead of on the stack. keywords: none, seen(DEFAULT) -[no-]scalar-rep enable(DEFAULT)/disable scalar replacement (requires -O3) -[no]pad enable/disable(DEFAULT) changing variable and array memory layout -safe-cray-ptr Cray pointers do not alias with other variables -[no-]ansi-alias enable/disable(DEFAULT) use of ANSI aliasing rules optimizations; user asserts that the program adheres to these rules -[no-]complex-limited-range enable/disable(DEFAULT) the use of the basic algebraic expansions of some complex arithmetic operations. This can allow for some performance improvement in programs which use a lot of complex arithmetic at the loss of some exponent range. -reentrancy specify whether the threaded, reentrant run-time support should be used Keywords: none (same as -noreentrancy), threaded, async -noreentrancy do not use threaded, reentrant run-time support -heap-arrays [n] temporary arrays of minimum size n (in kilobytes) are allocated in heap memory rather than on the stack. If n is not specified, all temporary arrays are allocated in heap memory. -no-heap-arrays temporary arrays are allocated on the stack (DEFAULT) -[no-]opt-multi-version-aggressive enables more aggressive multi-versioning to check for pointer aliasing and scalar replacement -opt-ra-region-strategy[=] select the method that the register allocator uses to partition each routine into regions routine - one region per routine block - one region per block trace - one region per trace loop - one region per loop default - compiler selects best option -[no-]vec enables(DEFAULT)/disables vectorization -[no-]vec-guard-write enables cache/bandwidth optimization for stores under conditionals within vector loops -vec-threshold[n] sets a threshold for the vectorization of loops based on the probability of profitable execution of the vectorized loop in parallel -opt-malloc-options={0|1|2|3|4} specify malloc configuration parameters. Specifying a non-zero value will cause alternate configuration parameters to be set for how malloc allocates and frees memory -opt-jump-tables= control the generation of jump tables default - let the compiler decide when a jump table, a series of if-then-else constructs or a combination is generated large - generate jump tables up to a certain pre-defined size (64K entries) - generate jump tables up to in size use -no-opt-jump-tables to lower switch statements as chains of if-then-else constructs -fno-jump-tables do not generate jump tables for switches and if-then-else statements -opt-block-factor= specify blocking factor for loop blocking -opt-streaming-stores specifies whether streaming stores are generated always - enables generation of streaming stores under the assumption that the application is memory bound auto - compiler decides when streaming stores are used (DEFAULT) never - disables generation of streaming stores -mkl[=] link to the Intel(R) Math Kernel Library (Intel(R) MKL) and bring in the associated headers parallel - link using the threaded Intel(R) MKL libraries. This is the default when -mkl is specified sequential - link using the non-threaded Intel(R) MKL libraries cluster - link using the Intel(R) MKL Cluster libraries plus the sequential Intel(R) MKL libraries -[no-]opt-subscript-in-range assumes no overflows in the intermediate computation of the subscripts -coarray[=shared|distributed] enable/disable(DEFAULT) coarray syntax for data parallel programming. The default is shared-memory; distributed memory is only valid with the Intel(R) Cluster Toolkit -coarray-num-images=n set default number of coarray images -[no-]opt-matmul replace matrix multiplication with calls to intrinsics and threading libraries for improved performance (DEFAULT at -O3 -parallel) -[no-]simd enables(DEFAULT)/disables vectorization using SIMD directive -guide-opts= tells the compiler to analyze certain code and generate recommendations that may improve optimizations -guide-file[=] causes the results of guided auto-parallelization to be output to a file -guide-file-append[=] causes the results of guided auto-parallelization to be appended to a file -guide[=] lets you set a level (1 - 4) of guidance for auto-vectorization, auto-parallelization, and data transformation (DEFAULT is 4 when the option is specified) -guide-data-trans[=] lets you set a level (1 - 4) of guidance for data transformation (DEFAULT is 4 when the option is specified) -guide-par[=] lets you set a level (1 - 4) of guidance for auto-parallelization (DEFAULT is 4 when the option is specified) -guide-vec[=] lets you set a level (1 - 4) of guidance for auto-vectorization (DEFAULT is 4 when the option is specified) -opt-mem-layout-trans[=] controls the level of memory layout transformations performed by the compiler 0 - disable memory layout transformations (same as -no-opt-mem-layout-trans) 1 - enable basic memory layout transformations 2 - enable more memory layout transformations (DEFAULT when the option is specified) 3 - enable aggressive memory layout transformations Profile Guided Optimization (PGO) --------------------------------- -prof-dir specify directory for profiling output files (*.dyn and *.dpi) -prof-src-root specify project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -prof-src-root-cwd specify the current directory as the project root directory for application source files to enable relative path resolution during profile feedback on sources below that directory -[no-]prof-src-dir specify whether directory names of sources should be considered when looking up profile records within the .dpi file -prof-file specify file name for profiling summary file -[no-]prof-data-order enable/disable(DEFAULT) static data ordering with profiling -[no-]prof-func-order enable/disable(DEFAULT) function ordering with profiling -[no-]prof-func-groups enable(DEFAULT with PGO)/disable function grouping -prof-gen[=keyword] instrument program for profiling. Optional keyword may be srcpos or globdata -no-prof-gen disable profiling instrumentation -prof-use[=] enable use of profiling information during optimization weighted - invokes profmerge with -weighted option to scale data based on run durations [no]merge - enable(default)/disable the invocation of the profmerge tool -no-prof-use disable use of profiling information during optimization -opt-prefetch[=n] enable levels of prefetch insertion, where 0 disables. n may be 0 through 4 inclusive. Default is 2. -no-opt-prefetch disable(DEFAULT) prefetch insertion. Equivalent to -opt-prefetch=0 -p compile and link for function profiling with UNIX gprof tool On IA32 and Intel(r)64, -pg is also valid -f[no-]instrument-functions determine whether function entry and exit points are instrumented -prof-hotness-threshold= set the hotness threshold for function grouping and function ordering val indicates percentage of functions to be placed in hot region. This option requires -prof-use and -prof-func-groups or -prof-func-order -prof-value-profiling=[,,...] limit value profiling none - inhibit all types of value profiling nodivide - inhibit value profiling of non-compile time constants used in division or remainder operations noindcall - inhibit value profiling of function addresses at indirect call sites -profile-functions enable instrumentation in generated code for collecting function execution time profiles -profile-loops: enable instrumentation in generated code for collecting loop execution time profiles inner - instrument inner loops outer - instrument outer loops all - instrument all loops -profile-loops-report: Control the level of instrumentation inserted for reporting loop execution profiles 1 - report loop times 2 - report loop times and iteration counts Optimization Reports -------------------- -vec-report[n] control amount of vectorizer diagnostic information n=0 no diagnostic information n=1 indicate vectorized loops (DEFAULT when enabled) n=2 indicate vectorized/non-vectorized loops n=3 indicate vectorized/non-vectorized loops and prohibiting data dependence information n=4 indicate non-vectorized loops n=5 indicate non-vectorized loops and prohibiting data dependence information -opt-report [n] generate an optimization report to stderr 0 disable optimization report output 1 minimum report output 2 medium output (DEFAULT when enabled) 3 maximum report output -opt-report-file= specify the filename for the generated report -opt-report-phase= specify the phase that reports are generated against -opt-report-routine= reports on routines containing the given name -opt-report-help display the optimization phases available for reporting -tcheck [mode] enable analysis of threaded applications (requires Intel(R) Thread Checker; cannot be used with compiler alone) tci - instruments a program to perform a thread-count-independent analysis tcd - instruments a program to perform a thread-count-dependent analysis (DEFAULT when mode is not used) api - instruments a program at the api-imports level -tcollect[=] inserts instrumentation probes calling the Intel(R) Trace Collector API. The library -l is linked in the default being -lVT (requires Intel(R) Trace Collector) -tcollect-filter file Enable or disable the instrumentation of specified functions. (requires Intel(R) Trace Collector) OpenMP* and Parallel Processing ------------------------------ -openmp enable the compiler to generate multi-threaded code based on the OpenMP* directives (same as -fopenmp) -openmp-stubs enables the user to compile OpenMP programs in sequential mode. The OpenMP directives are ignored and a stub OpenMP library is linked (sequential) -openmp-report{0|1|2} control the OpenMP parallelizer diagnostic level -openmp-lib choose which OpenMP library version to link with compat - use the GNU compatible OpenMP run-time libraries (DEFAULT) -openmp-threadprivate choose which threadprivate implementation to use compat - use the GNU compatible thread local storage legacy - use the Intel compatible implementation (DEFAULT) -parallel enable the auto-parallelizer to generate multi-threaded code for loops that can be safely executed in parallel -par-report{0|1|2|3} control the auto-parallelizer diagnostic level -par-threshold[n] set threshold for the auto-parallelization of loops where n is an integer from 0 to 100 -par-runtime-control[n] Control parallelizer to generate runtime check code for effective automatic parallelization. n=0 no runtime check based auto-parallelization n=1 generate runtime check code under conservative mode (DEFAULT when enabled) n=2 generate runtime check code under heuristic mode n=3 generate runtime check code under aggressive mode -par-schedule-static[=n] Specifies a scheduling algorithm for DO loop iteration. Divides iterations into contiguous pieces. Size n if specified, equal sized pieces if not. -par-schedule-static_balanced[=n] Divides iterations into even-sized chunks. Size n if specified, equal sized pieces if not. -par-schedule-static-steal[=n] Divides iterations into even-sized chunks, but allows threads to steal parts of chunks from neighboring threads -par-schedule-dynamic[=n] Specifies a scheduling algorithm for DO loop iteration. Assigns iterations to threads in chunks dynamically. Chunk size is n iterations if specified, otherwise 1. -par-schedule-guided[=n] Specifies a scheduling algorithm for DO loop iteration. Indicates a minimum number of iterations. If specified, n is the minimum number, otherwise 1. -par-schedule-guided-analytical[=n] Divides iterations by using exponential distribution or dynamic distributions. -par-schedule-runtime Specifies a scheduling algorithm for DO loop iteration. Defers the scheduling decision until runtime. -par-schedule-auto Lets the compiler or run-time system determine the scheduling algorithm. -par-affinity=[,...][,][,] tune application performance by setting different thread affinity -par-num-threads= tune application performance by setting different number of threads -parallel-source-info[=n] enable(DEFAULT)/disable the emission of source location information for parallel code generation with OpenMP and auto-parallelization 0 - disable (same as -no-parallel-source-info) 1 - emit routine name and line information (DEFAULT) 2 - emit path, file, routine name and line information Floating Point -------------- -fp-model enable floating point model variation [no-]except - enable/disable floating point semantics fast[=1|2] - enables more aggressive floating point optimizations precise - allows value-safe optimizations source - enables intermediates in source precision strict - enables -fp-model precise -fp-model except, disables contractions and enables pragma stdc fenv_access -fp-speculation= enable floating point speculations with the following conditions: fast - speculate floating point operations (DEFAULT) safe - speculate only when safe strict - same as off off - disables speculation of floating-point operations -pc32 set internal FPU precision to 24 bit significand -pc64 set internal FPU precision to 53 bit significand -pc80 set internal FPU precision to 64 bit significand (DEFAULT) -mp1 improve floating-point precision (speed impact less than -mp) -mieee-fp same as -mp, can be disabled with -mno-ieee-fp -[no-]prec-sqrt determine if certain square root optimizations are enabled -[no-]prec-div improve precision of FP divides (some speed impact) -[no-]fast-transcendentals generate a faster version of the transcendental functions -[no-]fp-port round fp results at assignments and casts (some speed impact) -fp-stack-check enable fp stack checking after every function/procedure call -rcd rounding mode to enable fast float-to-int conversions -rounding-mode chopped set internal FPU rounding control to truncate -[no-]ftz enable/disable flush denormal results to zero -fpe{0|1|3} specifies program-wide behavior on floating point exceptions -fpe-all={0|1|3} specifies floating point exception behavior on all functions and subroutines. Also sets -assume ieee_fpe_flags -[no]fltconsistency specify that improved floating-point consistency should be used -[no-]fma enable/disable the combining of floating point multiplies and add/subtract operations -[no]recursive compile all procedures for possible recursive execution Inlining -------- -inline-level= control inline expansion: n=0 disable inlining n=1 inline functions declared with ATTRIBUTES INLINE or FORCEINLINE n=2 inline any function, at the compiler's discretion -f[no-]inline-functions inline any function at the compiler's discretion -finline-limit= set maximum number of statements a function can have and still be considered for inlining -inline-min-size= set size limit for inlining small routines -no-inline-min-size no size limit for inlining small routines -inline-max-size= set size limit for inlining large routines -no-inline-max-size no size limit for inlining large routines -inline-max-total-size= maximum increase in size for inline function expansion -no-inline-max-total-size no size limit for inline function expansion -inline-max-per-routine= maximum number of inline instances in any function -no-inline-max-per-routine no maximum number of inline instances in any function -inline-max-per-compile= maximum number of inline instances in the current compilation -no-inline-max-per-compile no maximum number of inline instances in the current compilation -inline-factor= set inlining upper limits by n percentage -no-inline-factor do not set set inlining upper limits -inline-forceinline treat inline routines as forceinline -inline-calloc directs the compiler to inline calloc() calls as malloc()/memset() Output, Debug, PCH ------------------ -c compile to object (.o) only, do not link -S compile to assembly (.s) only, do not link -fsource-asm produce assembly file with optional source annotations (requires -S) -f[no-]verbose-asm produce assembly file with compiler comments (DEFAULT) (requires -S) -fcode-asm produce assembly file with optional code annotations (requires -S) -use-msasm support Microsoft* style assembly language insertion using MASM style syntax -Fa[file] name assembly file (or directory for multiple files; i.e. /FaMYDIR\) -Fo[file] name object file (or directory for multiple files; i.e. /FoMYDIR\) -o name output file -list [] specify that a listing file should be generated -list-line-len=# overrides the default line length (80) in a listing file -list-page-len=# overrides the default page length (66) in a listing file -show controls the contents of the listing file keywords: all, none, [no]include, [no]map, [no]options -g produce symbolic debug information in object file (implies -O0 when another optimization option is not explicitly set) -debug [keyword] enable debug information and control output of enhanced debug information keywords: all, full, minimal, none, [no]inline-debug-info [no]variable-locations, [no]semantic-stepping, extended parallel -debug-parameters [keyword] control output of debug information for PARAMETERS keywords: all, used, none (same as -nodebug-parameters) -nodebug-parameters do not output debug information for PARAMETERS -fvar-tracking same as -debug variable_locations -fvar-tracking-assignments same as -debug semantic_stepping -g0 disable generation of symbolic debug information -gdwarf-2 enable generation of debug information using the DWARF2 format -gdwarf-3 enable generation of debug information using the DWARF3 format -fno-merge-debug-strings do not merge identical debug strings in different object files -[no]d-lines compile debug statements (indicated by D in column 1) -DD compile debug statements, indicated by D in column 1. This option prevents the definition of a macro named D using the command line -Dname option (use -Dname=n syntax instead) -ftrapuv trap uninitialized variables -map-opts enable option mapping tool -print-multi-lib print information about libraries being used Preprocessor ------------ -D[=] define macro -nodefines, -noD specifies that any -D macros go to the preprocessor only, and not to the compiler -U remove predefined macro -allow nofpp-comments If a Fortran end-of-line comment is seen within a #define, treat it as part of the definition. Default is allow:fpp-comments -E preprocess to stdout -EP preprocess to stdout, omitting #line directives -P preprocess to file, omitting #line directives -preprocess-only same as -P -[no]keep keep/remove preprocessed file generated by preprocessor as input to compiler stage. Not affected by -save-temps. Default is -nokeep -fpp[n], -[no]fpp run Fortran preprocessor on source files prior to compilation n=0 disable running the preprocessor, equivalent to nofpp n=1,2,3 run preprocessor -module path specify path where mod files should be placed and first location to look for mod files -I add directory to include file search path -idirafter add directory to the second include file search path (after -I) -isystem add directory to the start of the system include path -X, -nostdinc remove standard directories from include file search path -B find libraries, headers and executables in -[no]gen-dep[=filename] generate dependency information. If no filename is specified, output to stdout -gen-depformat=keyword generate dependency information in the specified format. One of: make, nmake Component Control ----------------- -Qoption,, pass options to tool specified by -Qlocation,, set as the location of tool specified by -Qinstall set as root of compiler installation Language -------- -[no]altparam specify if alternate form of parameter constant declarations (without parenthesis) is recognized. Default is to recognize -assume specify assumptions made by the optimizer and code generator keywords: none, [no]byterecl, [no]buffered_io, [no]bscc (nobscc same as -nbs), [no]cc_omp, [no]minus0, [no]dummy_aliases (same as -common-args), [no]ieee_fpe_flags, [no]fpe_summary, [no]old_boz, [no]old_logical_ldio, [no]old_ldout_format, [no]old_maxminloc, [no]old_unit_star, [no]old_xor, [no]protect_constants, [no]protect_parens, [no]realloc_lhs, [no]2underscore, [no]underscore (same as -us), [no]std_mod_proc_name, [no]source_include, [no]split_common,[no]writeable_strings -ccdefault specify default carriage control for units 6 and * keywords: default, fortran, list or none -[no]check check run-time conditions. Default is -nocheck keywords: all (same as -C), none (same as -nocheck), [no]arg_temp_created, [no]bounds (same as -CB), [no]format, [no]output_conversion, [no]pointer (same as -CA), [no]uninit (same as -CU) -common-args assume "by reference" subprogram arguments may alias one another. Same as -assume dummy_aliases -e03 issue errors for language elements that are not standard in Fortran 2003 (same as -stand f03 -warn stderrors options) -e95 issue errors for language elements that are not standard in Fortran 95 (same as -stand f95 -warn stderrors options) -e90 issue errors for language elements that are not standard in Fortran 90 (same as -stand f90 -warn stderrors options) -[no]extend-source [] specify rightmost column for fixed form sources keywords: 72 (same as -noextend-source and -72), 80 (same as -80), 132 (same as -132. Default if you specify -extend-source without a keyword.) -fixed specify source files are in fixed format. Same as -FI -nofixed indicates free format -free specify source files are in free format. Same as -FR -nofree indicates fixed format -[no]mixed-str-len-arg indicate whether hidden lengths are passed after their character argument or after all arguments. -names specify how source code identifiers and external names are interpreted. keywords: as_is, lowercase, uppercase -[no]pad-source make compiler acknowledge blanks at the end of a line -stand [] specifies level of conformance with ANSI standard to check for. If keyword is not specified, level of conformance is f03 keywords: f90 (same as -std90), f95(same as -std95), f03(same as -std95), none (same as -nostand) -standard-semantics sets assume keywords to conform to the semantics of the f03 standard. May result in performance loss. assume keywords set by -standard-semantics: byterecl, fpe_summary, minus0, noold_maxminloc, noold_unit_star, noold_xor, protect_parens, realloc_lhs, std_mod_proc_name, noold_ldout_format -syntax-only perform syntax and semantic checking only (no object file produced) Compiler Diagnostics -------------------- -w disable all warnings -W disable warnings (n = 0) or show warnings (n = 1 DEFAULT, same as -warn general) -warn specifies the level of warning messages issued keywords: all, none (same as -nowarn) [no]alignments, [no]declarations, [no]errors, [no]general, [no]ignore_loc, [no]interfaces, [no]stderrors, [no]truncated_source, [no]uncalled, [no]unused, [no]usage -nowarn suppress all warning messages -WB turn a compile-time bounds check into a warning -Winline enable inline diagnostics -[no]traceback specify whether the compiler generates PC correlation data used to display a symbolic traceback rather than a hexadecimal traceback at runtime failure -[no]gen-interfaces[:[no]source] generate interface blocks for all routines in the file. Can be checked using -warn interfaces nosource indicates temporary source files should not be saved -error-limit specify the maximum number of error-level or fatal-level compiler errors allowed -noerror-limit set no maximum number on error-level or fatal-level error messages -diag-enable [,,...] enable the specified diagnostics or diagnostic groups -diag-disable [,,...] disable the specified diagnostics or diagnostic groups where may be individual diagnostic numbers or group names. where group names include: sc[n] - perform source code analysis: n=1 for critical errors, n=2 for all errors and n=3 for all errors and warnings sc-include - perform source code analysis on include files sc-parallel[n] - perform analysis of parallelization in source code: n=1 for critical errors, n=2 for errors, n=3 for all errors and warnings warn - diagnostic messages that have "warning" severity level. error - diagnostic messages that have "error" severity level. remark - diagnostic messages that are remarks or comments. vec - diagnostic messages issued by the vectorizer. par - diagnostic messages issued by the auto-parallelizer openmp - diagnostic messages issued by the OpenMP* parallelizer. cpu-dispatch Specifies the CPU dispatch remarks. -diag-error [,,...] output the specified diagnostics or diagnostic groups as errors -diag-warning [,,...] output the specified diagnostics or diagnostic groups as warnings -diag-remark [,,...] output the the specified diagnostics or diagnostic groups as remarks -diag-dump display the currently enabled diagnostic messages to stdout or to a specified diagnostic output file. -diag-sc-dir= directory where diagnostics from Static security analysis are created, rather than current working directory. -diag-file[=] where diagnostics are emitted to. Not specifying this causes messages to be output to stderr -diag-file-append[=] where diagnostics are emitted to. When already exists, output is appended to the file -[no-]diag-id-numbers enable(DEFAULT)/disable the diagnostic specifiers to be output in numeric form -diag-error-limit specify the maximum number of errors emitted Miscellaneous ------------- -[no]logo display compiler version information. /nologo disables the output -V display compiler version information -dumpmachine display the target machine only --version display GCC style version information -sox[=[,keyword]] enable saving of compiler options, version and additional information in the executable. Use -no-sox to disable(DEFAULT) profile - include profiling data inline - include inlining information -save-temps store the intermediate files in current directory and name them based on the source file. Only saves files that are generated by default -dryrun show driver tool commands but do not execute tools -v show driver tool commands and execute tools -what display detailed compiler version information -watch tells the driver to output processing information keywords: all, none (same as -nowatch), [no]source, [no]cmd (same as -v) -nowatch suppress processing information output (DEFAULT) -Tf compile file as Fortran source -multiple-processes[=] create multiple processes that can be used to compile large numbers of source files at the same time Data ---- -i{2|4|8} set default KIND of integer and logical variables to 2, 4, or 8 -integer-size specifies the default size of integer and logical variables size: 16, 32, 64 -r{8|16} set default size of real to 8 or 16 bytes -real-size specify the size of REAL and COMPLEX declarations, constants, functions, and intrinsics size: 32, 64, 128 -autodouble same as -real-size 64 or -r8 -double-size defines the size of DOUBLE PRECISION and DOUBLE COMPLEX declarations, constants, functions, and intrinsics size: 64, 128 -[no]fpconstant extends the precision of single precision constants assigned to double precision variables to double precision -[no]intconstant use Fortran 77 semantics, rather than Fortran 90/95, to determine kind of integer constants -auto make all local variables AUTOMATIC -auto-scalar make scalar local variables AUTOMATIC (DEFAULT) -save save all variables (static allocation) (same as -noauto, opposite of -auto) -[no]zero enable/disable(DEFAULT) implicit initialization to zero of local scalar variables of intrinsic type INTEGER, REAL, COMPLEX, or LOGICAL that are saved and not initialized -dyncom make given common blocks dynamically-allocated -Zp[n] specify alignment constraint for structures (n=1,2,4,8,16 -Zp16 DEFAULT) -[no]align analyze and reorder memory layout for variables and arrays -align specify how data items are aligned keywords: all (same as -align), none (same as -noalign), [no]commons, [no]dcommons, [no]qcommons, rec1byte, rec2byte, rec4byte, rec8byte, rec16byte, [no]records, [no]sequence -fminshared Compilation is for the main executable. Absolute addressing can be used and non-position independent code generated for symbols that are at least protected -fcommon Enables the compiler to treat common variables as if they were defined. That in turn allows the use of gprel addressing of common data variables. -fno-common disables -fstack-security-check enable overflow security checks. -f[no-]stack-security-check disables (DEFAULT) -fstack-protector enable stack overflow security checks. -f[no-]stack-protector disables (DEFAULT) -fstack-protector-all enable stack overflow security checks including functions. -f[no-]stack-protector-all disables (DEFAULT) -fpic, -fPIC generate position independent code (-fno-pic/-fno-PIC is DEFAULT) -fpie, -fPIE generate position independent code that will be linked into an executable (-fno-pie/-fno-PIE is DEFAULT) -[no-]global-hoist enable(DEFAULT)/disable external globals are load safe -f[no-]keep-static-consts enable/disable(DEFAULT) emission of static const variables even when not referenced -fpack-struct pack structure members together -f[no-]math-errno set ERRNO after calling standard math library functions -no-bss-init disable placement of zero-initialized variables in BSS (use DATA) -f[no-]zero-initialized-in-bss put explicitly zero initialized variables into the DATA section instead of the BSS section -mcmodel= use a specific memory model to generate code and store data small - Restricts code and data to the first 2GB of address space (DEFAULT) medium - Restricts code to the first 2GB; it places no memory restriction on data large - Places no memory restriction on code or data -convert specify the format of unformatted files containing numeric data keywords: big_endian, cray, ibm, little_endian, native, vaxd, vaxg -falign-functions=[2|16] align the start of functions on a 2 (DEFAULT) or 16 byte boundary -falign-functions align the start of functions to an optimal machine-dependent value. -fno-align-functions (DEFAULT) aligns on a 2-byte boundary -fvisibility=[extern|default|protected|hidden|internal] Global symbols (data and functions) will get the visibility attribute given by default. Symbol visibility attributes explicitly set in the source code or using the symbol visibility attribute file options will override the -fvisibility setting -fvisibility-extern= Space separated symbols listed in the argument will get visibility set to extern -fvisibility-default= Space separated symbols listed in the argument will get visibility set to default -fvisibility-protected= Space separated symbols listed in the argument will get visibility set to protected -fvisibility-hidden= Space separated symbols listed in the argument will get visibility set to hidden -fvisibility-internal= Space separated symbols listed in the argument will get visibility set to internal -fvisibility-inlines-hidden mark inline member functions as hidden -fimf-absolute-error=value[:funclist] define the maximum allowable absolute error for math library function results -fimf-accuracy-bits=bits[:funclist] define the relative error, measured by the number of correct bits, for math library function results -fimf-arch-consistency=value[:funclist] ensures that the math library functions produce consistent results across different implementations of the same architecture -fimf-max-error=ulps[:funclist] defines the maximum allowable relative error, measured in ulps, for math library function results -fimf-precision=value[:funclist] defines the accuracy (precision) for math library functions Compatibility ------------- -fpscomp specify the level of compatibility to adhere to with Fortran PowerStation keywords: all, none (same as -nofpscomp), [no]filesfromcmd, [no]general, [no]ioformat, [no]ldio_spacing, [no]libs, [no]logicals -nofpscomp no specific level of compatibility with Fortran PowerStation -f66, -66 allow extensions that enhance FORTRAN-66 compatibility -f77rtl specify that the Fortran 77 specific run-time support should be used -nof77rtl disables -vms enable VMS I/O statement extensions -gcc-name= name and location of gcc if not where expected -gxx-name= name and location of g++ if not where expected -gcc-version= specify the of gcc compatibility. Default value matches gcc version installed. Major/Minor versions listed but patch levels (i.e. 345) are permissible Example: -gcc-version=410 -> gcc 4.1.x compatibility Linking/Linker -------------- -L instruct linker to search for libraries -l instruct the linker to link in the -l library -shared-intel link Intel provided libraries dynamically -static-intel link Intel provided libraries statically -shared-libgcc link libgcc dynamically -static-libgcc link libgcc statically -dynamic-linker select dynamic linker other than the default -no-cxxlib do not link in C++ runtime libraries -cxxlib[=dir] link using C++ run-time libraries provided with gcc dir is an optional top-level location for the gcc binaries and libraries -nodefaultlibs do not use standard libraries when linking -nostartfiles do not use standard startup files when linking -nostdlib do not use standard libraries and startup files when linking -nofor-main do not link against Fortran main object. Used when linking Fortran objects with C main program -static prevents linking with shared libraries -shared produce a shared object -Bstatic specify following libraries are linked statically -Bdynamic specify following libraries are linked dynamically -cxxlib- tell the compiler which C++ run-time libraries to use nostd - do not link in standard C++ library -T direct linker to read link commands from -Xlinker pass directly to the linker for processing -Wa,[,,...] pass options o1, o2, etc. to the assembler -Wl,[,,...] pass options o1, o2, etc. to the linker for processing -Wp,[,,...] pass options o1, o2, etc. to the preprocessor -threads specify that multi-threaded libraries should be linked against -nothreads disables multi-threaded libraries Linker Specific Options ----------------------- These options are specific to the linker. Details can be found in the linker documentation and man page -L -T -h -u -z -i -r -s -N -Bsymbolic -Bdynamic -Bstatic Deprecated Options ------------------ -export No replacement -export-dir No replacement -Ob use -inline-level= -i-dynamic use -shared-intel -i-static use -static-intel -inline-debug-info use -debug inline-debug-info -mp use -fp-model -use-asm No replacement -prof-genx use -prof-gen=srcpos -fwritable-strings use -assume writeable-strings -1, -66, -onetrip use -f66 -Vaxlib No replacement -automatic use -auto -cm use -warn nousage -dps use -altparam -lowercase use -names lowercase -uppercase use -names uppercase -nus use -assume nounderscore -pthread use -reentrancy threaded -w90, -w95 No replacement -tune use -x -arch pn* use -arch -openmp-profile No replacement -tprofile No replacement -xK use -mia32 -axK use -mia32 -xW use -msse2 -axW use -msse2 -xN use -xSSE2 -axN use -axSSE2 -xP use -xSSE3 -axP use -axSSE3 -xT use -xSSSE3 -axT use -axSSSE3 -xS use -xSSE4.1 -axS use -axSSE4.1 -xO use -msse3 -xSSE3_ATOM use -xSSSE3_ATOM -diag-enable sv use -diag-enable sc -diag-enable sv-include use -diag-enable sc-include -diag-disable sv use -diag-disable sc -diag-sv use -diag-enable sc -diag-sv-error use -diag-disable warning -diag-sv-include use -diag-enable sc-include -diag-sv-level No replacement -diag-sv-sup use -diag-disable [,,...] -help [category] print full or category help message Valid categories include advanced - Advanced Optimizations codegen - Code Generation compatibility - Compatibility component - Component Control data - Data deprecated - Deprecated Options diagnostics - Compiler Diagnostics float - Floating Point help - Help inline - Inlining ipo - Interprocedural Optimization (IPO) language - Language link - Linking/Linker misc - Miscellaneous opt - Optimization output - Output pgo - Profile Guided Optimization (PGO) preproc - Preprocessor reports - Optimization Reports openmp - OpenMP and Parallel Processing Copyright (C) 1985-2012, Intel Corporation. All rights reserved. * Other names and brands may be claimed as the property of others. Trying FC compiler flag -g Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -g Popping language FC ================================================================================ TEST configureDebugging from PETSc.options.debugging(/glade/p/work/fandek/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" ================================================================================ TEST checkRestrict from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.compilers Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c(5): error: expected a ";" float * restrict x;; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set C restrict keyword to __restrict__ Defined "C_RESTRICT" to " __restrict__" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:310) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:310) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:321) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:321) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:164) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:164) Determines the libraries needed to link with C Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Possible ERROR while running linker: stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrtstderr: icc version 12.1.5 (gcc version 4.4.7 compatibility) /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom -mP1OPT_version=12.1-intel64 -mGLOB_diag_enable_disable=D:1572 -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -wd1572 -g -ldl -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" -mGLOB_position_independent_code -mGLOB_preemption_model=3 -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/iccWWsG01as_.s -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d8e -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/glade/scratch/fandek/icch0dL14slis -mIPOPT_mo_global_data -mIPOPT_link_script_file=/glade/scratch/fandek/iccahaQlJscript "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 20100205" "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" "--eh-frame-hdr" "--build-id" "-dynamic-linker" "/lib64/ld-linux-x86-64.so.2" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-o" "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest" "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" "-L/lib/../lib64" "-L/usr/lib/../lib64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.." "-L/lib64" "-L/lib" "-L/usr/lib64" "-L/usr/lib" "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o" "-ldl" "-Bstatic" "-lnetcdff" "-lnetcdf" "-lhdf5_hl" "-lhdf5" "-lsz" "-lcurl" "-lidn" "-lssl" "-lcrypto" "-lz" "-Bdynamic" "-lgpfs" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32" "-rpath" "/glade/apps/opt/usr/lib" "-ldl" "--allow-shlib-undefined" "--enable-new-dtags" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-lmpi" "-ldl" "-lirc" "-lpthread" "-lrt" "-Bstatic" "-limf" "-lsvml" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-ldecimal" "--as-needed" "-Bdynamic" "-lcilkrts" "-lstdc++" "--no-as-needed" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icchd7p6a.o "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icchd7p6a.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.c /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -mIPOPT_object_files=/glade/scratch/fandek/iccWX6cqPolis -mIPOPT_assembly_files=/glade/scratch/fandek/iccVa11Jtalis -mIPOPT_generated_tempfiles=/glade/scratch/fandek/iccM9HS37elis -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icclFwMnMeobj -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icc60YJHqllis ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Bdynamic -lgpfs -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -rpath /glade/apps/opt/usr/lib -ldl --allow-shlib-undefined --enable-new-dtags -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lmpi -ldl -lirc -lpthread -lrt -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal --as-needed -Bdynamic -lcilkrts -lstdc++ --no-as-needed -lgcc -lgcc_s -Bstatic -lirc -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o Popping language C compilers: Checking arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc compilers: Unknown arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -wd1572 compilers: Unknown arg -wd1572 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library : -ldl compilers: Checking arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Unknown arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Unknown arg -I/glade/apps/opt/usr/include compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Found library : -lnetcdff compilers: Checking arg -lnetcdf compilers: Found library : -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Found library : -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Found library : -lhdf5 compilers: Checking arg -lsz compilers: Found library : -lsz compilers: Checking arg -lcurl compilers: Found library : -lcurl compilers: Checking arg -lidn compilers: Found library : -lidn compilers: Checking arg -lssl compilers: Found library : -lssl compilers: Checking arg -lcrypto compilers: Found library : -lcrypto compilers: Checking arg -lz compilers: Found library : -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Found library : -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -D__64BIT__ compilers: Unknown arg -D__64BIT__ compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Unknown arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include compilers: Unknown arg -I/opt/ibmhpc/pecurrent/base/include compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Found library : -lirc compilers: Checking arg -lpthread compilers: Found library : -lpthread compilers: Checking arg -lrt compilers: Found library : -lrt compilers: Checking arg icc compilers: Unknown arg icc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 12.1.5 compilers: Unknown arg 12.1.5 compilers: Checking arg (gcc compilers: Unknown arg (gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.4.7 compilers: Unknown arg 4.4.7 compilers: Checking arg compatibility) compilers: Unknown arg compatibility) compilers: Checking arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom compilers: Unknown arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom compilers: Checking arg -mP1OPT_version=12.1-intel64 compilers: Unknown arg -mP1OPT_version=12.1-intel64 compilers: Checking arg -mGLOB_diag_enable_disable=D:1572 compilers: Unknown arg -mGLOB_diag_enable_disable=D:1572 compilers: Checking arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=447 compilers: Unknown arg -mGLOB_gcc_version=447 compilers: Checking arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Unknown arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Unknown arg -I/glade/apps/opt/usr/include compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Unknown arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include compilers: Unknown arg -I/opt/ibmhpc/pecurrent/base/include compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -wd1572 compilers: Unknown arg -wd1572 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -ldl compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -D__64BIT__ compilers: Unknown arg -D__64BIT__ compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Checking arg -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt" compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Checking arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/iccWWsG01as_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/iccWWsG01as_.s compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d8e compilers: Unknown arg -mGLOB_product_id_code=0x22006d8e compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/glade/scratch/fandek/icch0dL14slis compilers: Unknown arg -mIPOPT_source_files_list=/glade/scratch/fandek/icch0dL14slis compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/glade/scratch/fandek/iccahaQlJscript compilers: Unknown arg -mIPOPT_link_script_file=/glade/scratch/fandek/iccahaQlJscript compilers: Checking arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Found library directory: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.." compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lnetcdff" compilers: Checking arg "-lnetcdf" compilers: Checking arg "-lhdf5_hl" compilers: Checking arg "-lhdf5" compilers: Checking arg "-lsz" compilers: Checking arg "-lcurl" compilers: Checking arg "-lidn" compilers: Checking arg "-lssl" compilers: Checking arg "-lcrypto" compilers: Checking arg "-lz" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lgpfs" compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/usr/lib compilers: Checking arg "-ldl" compilers: Checking arg "--allow-shlib-undefined" compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg "--enable-new-dtags" compilers: Unknown arg --enable-new-dtags compilers: Checking arg "-rpath" compilers: Found -rpath library: /opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping-rpath compilers: Checking arg "-lmpi" compilers: Checking arg "-ldl" compilers: Checking arg "-lirc" compilers: Checking arg "-lpthread" compilers: Checking arg "-lrt" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-limf" compilers: Found library : -limf compilers: Checking arg "-lsvml" compilers: Found library : -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Found library : -lipgo compilers: Checking arg "-ldecimal" compilers: Found library : -ldecimal compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lcilkrts" compilers: Found library : -lcilkrts compilers: Checking arg "-lstdc++" compilers: Found library : -lstdc++ compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_s" compilers: Found library : -lgcc_s compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_s" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Found library : -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icchd7p6a.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icchd7p6a.o compilers: Checking arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icchd7p6a.o compilers: Unknown arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icchd7p6a.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.c compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.c compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=/glade/scratch/fandek/iccWX6cqPolis compilers: Unknown arg -mIPOPT_object_files=/glade/scratch/fandek/iccWX6cqPolis compilers: Checking arg -mIPOPT_assembly_files=/glade/scratch/fandek/iccVa11Jtalis compilers: Unknown arg -mIPOPT_assembly_files=/glade/scratch/fandek/iccVa11Jtalis compilers: Checking arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/iccM9HS37elis compilers: Unknown arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/iccM9HS37elis compilers: Checking arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icclFwMnMeobj compilers: Unknown arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icclFwMnMeobj compilers: Checking arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icc60YJHqllis compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icc60YJHqllis compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -ldl compilers: Checking arg --allow-shlib-undefined compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping-rpath compilers: Checking arg -lmpi compilers: Checking arg -ldl compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lcilkrts compilers: Checking arg -lstdc++ compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Libraries needed to link C code with another linker: ['-ldl', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-lnetcdff', '-lnetcdf', '-lhdf5_hl', '-lhdf5', '-lsz', '-lcurl', '-lidn', '-lssl', '-lcrypto', '-lz', '-lgpfs', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-lmpi', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-lirc', '-lpthread', '-lrt', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-limf', '-lsvml', '-lipgo', '-ldecimal', '-lcilkrts', '-lstdc++', '-lgcc_s', '-lirc_s', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7'] compilers: Check that C libraries can be used from Fortran Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1328) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1328) Check if -MMD works for dependency generation, and add it if it does Pushing language C Trying C compiler flag -MMD -MP Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g -MMD -MP /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "C_DEPFLAGS" to "-MMD -MP" Popping language C Pushing language Cxx Trying Cxx compiler flag -MMD -MP Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -wd1572 -g -fPIC -MMD -MP /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Popping language Cxx Pushing language FC Trying FC compiler flag -MMD -MP Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g -MMD -MP /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MMD' ifort: command line warning #10006: ignoring unknown option '-MP' Source: program main end Rejecting compiler flag -MMD -MP due to ifort: command line warning #10006: ignoring unknown option '-MMD' ifort: command line warning #10006: ignoring unknown option '-MP' Rejected FC compiler flag -MMD -MP Trying FC compiler flag -MMD Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g -MMD /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MMD' Source: program main end Rejecting compiler flag -MMD due to ifort: command line warning #10006: ignoring unknown option '-MMD' Rejected FC compiler flag -MMD Trying FC compiler flag -xMMD Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g -xMMD /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: ifort: command line error: Unrecognized keyword 'MMD' for option '-x' Source: program main end Rejecting compiler flag -xMMD due to nonzero status from link Rejecting compiler flag -xMMD due to ifort: command line error: Unrecognized keyword 'MMD' for option '-x' PETSc Error: No output file produced Rejected FC compiler flag -xMMD Trying FC compiler flag -qmakedep=gcc Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g -qmakedep=gcc /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Source: program main end Rejecting compiler flag -qmakedep=gcc due to ifort: command line warning #10006: ignoring unknown option '-qmakedep=gcc' Rejected FC compiler flag -qmakedep=gcc Trying FC compiler flag -MD Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g -MD /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Possible ERROR while running compiler: stderr: ifort: command line warning #10006: ignoring unknown option '-MD' Source: program main end Rejecting compiler flag -MD due to ifort: command line warning #10006: ignoring unknown option '-MD' Rejected FC compiler flag -MD Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1372) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1372) Check for -std=c99 or equivalent flag Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c(10): error: expected an expression for (int i=0; i<2; i++){ ^ /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c(10): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c(10): error: expected an expression for (int i=0; i<2; i++){ ^ /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c(10): error: identifier "i" is undefined for (int i=0; i<2; i++){ ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c (code 2) PETSc Error: No output file produced Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g -std=c99 /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Accepted C99 compile flag: -std=c99 Popping language C ================================================================================ TEST checkRestrict from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc(5): error: expected a ";" float * restrict x;; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc (code 2) Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:359) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:359) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:334) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:334) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:413) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:413) Determines the libraries needed to link with C++ Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Possible ERROR while running linker: stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrtstderr: icpc version 12.1.5 (gcc version 4.4.7 compatibility) /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom -mP1OPT_version=12.1-intel64 -mGLOB_diag_enable_disable=D:1572 -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -wd1572 -g -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mP3OPT_emit_line_numbers -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/icpcqeUciyas_.s -mIPOPT_activate -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 -mGLOB_product_id_code=0x22006d8b -mCG_bnl_movbe=T -mP3OPT_use_mspp_call_convention -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so -mIPOPT_link -mIPOPT_ipo_activate -mIPOPT_mo_activate -mIPOPT_source_files_list=/glade/scratch/fandek/icpc0gSFJBslis -mIPOPT_mo_global_data -mIPOPT_link_script_file=/glade/scratch/fandek/icpckGrFfVscript "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 20100205" "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" "--eh-frame-hdr" "--build-id" "-dynamic-linker" "/lib64/ld-linux-x86-64.so.2" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-L/glade/apps/opt/usr/lib" "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-o" "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest" "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" "-L/lib/../lib64" "-L/usr/lib/../lib64" "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.." "-L/lib64" "-L/lib" "-L/usr/lib64" "-L/usr/lib" "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o" "-ldl" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-lnetcdff" "-lnetcdf" "-lhdf5_hl" "-lhdf5" "-lsz" "-lcurl" "-lidn" "-lssl" "-lcrypto" "-lz" "-lgpfs" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-lmpi" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-lirc" "-lpthread" "-lrt" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-limf" "-lsvml" "-lipgo" "-ldecimal" "-lcilkrts" "-lstdc++" "-lgcc_s" "-lirc_s" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-ldl" "-Bstatic" "-lnetcdff" "-lnetcdf" "-lhdf5_hl" "-lhdf5" "-lsz" "-lcurl" "-lidn" "-lssl" "-lcrypto" "-lz" "-Bdynamic" "-lgpfs" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32" "-rpath" "/glade/apps/opt/usr/lib" "-ldl" "--allow-shlib-undefined" "--enable-new-dtags" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-lmpi" "-lmpigc4" "-ldl" "-lirc" "-lpthread" "-lrt" "-Bstatic" "-limf" "-lsvml" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-ldecimal" "--as-needed" "-Bdynamic" "-lcilkrts" "--no-as-needed" "-lstdc++" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc" "-Bdynamic" "-lc" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icpcaTIvFI.o "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icpcaTIvFI.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.c /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -mIPOPT_object_files=/glade/scratch/fandek/icpc8qNYa2olis -mIPOPT_assembly_files=/glade/scratch/fandek/icpc2UxwGlalis -mIPOPT_generated_tempfiles=/glade/scratch/fandek/icpcePqacFelis -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icpcMU9THYeobj -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icpcwccKdillis ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /usr/lib/gcc/x86_64-redhat-linux/4.4.7 -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Bdynamic -lgpfs -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -rpath /glade/apps/opt/usr/lib -ldl --allow-shlib-undefined --enable-new-dtags -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lmpi -lmpigc4 -ldl -lirc -lpthread -lrt -Bstatic -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -ldecimal --as-needed -Bdynamic -lcilkrts --no-as-needed -lstdc++ -lgcc -lgcc_s -Bstatic -lirc -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o Popping language Cxx compilers: Checking arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc compilers: Unknown arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -wd1572 compilers: Unknown arg -wd1572 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -lnetcdff compilers: Found library: -lnetcdff Library already in C list so skipping in C++ compilers: Checking arg -lnetcdf compilers: Found library: -lnetcdf Library already in C list so skipping in C++ compilers: Checking arg -lhdf5_hl compilers: Found library: -lhdf5_hl Library already in C list so skipping in C++ compilers: Checking arg -lhdf5 compilers: Found library: -lhdf5 Library already in C list so skipping in C++ compilers: Checking arg -lsz compilers: Found library: -lsz Library already in C list so skipping in C++ compilers: Checking arg -lcurl compilers: Found library: -lcurl Library already in C list so skipping in C++ compilers: Checking arg -lidn compilers: Found library: -lidn Library already in C list so skipping in C++ compilers: Checking arg -lssl compilers: Found library: -lssl Library already in C list so skipping in C++ compilers: Checking arg -lcrypto compilers: Found library: -lcrypto Library already in C list so skipping in C++ compilers: Checking arg -lz compilers: Found library: -lz Library already in C list so skipping in C++ compilers: Checking arg -lgpfs compilers: Found library: -lgpfs Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Found library: -lirc Library already in C list so skipping in C++ compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in C++ compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -limf compilers: Found library: -limf Library already in C list so skipping in C++ compilers: Checking arg -lsvml compilers: Found library: -lsvml Library already in C list so skipping in C++ compilers: Checking arg -lipgo compilers: Found library: -lipgo Library already in C list so skipping in C++ compilers: Checking arg -ldecimal compilers: Found library: -ldecimal Library already in C list so skipping in C++ compilers: Checking arg -lcilkrts compilers: Found library: -lcilkrts Library already in C list so skipping in C++ compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ Library already in C list so skipping in C++ compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in C++ compilers: Checking arg -lirc_s compilers: Found library: -lirc_s Library already in C list so skipping in C++ compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -ldl compilers: Checking arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Unknown arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Unknown arg -I/glade/apps/opt/usr/include compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -D__64BIT__ compilers: Unknown arg -D__64BIT__ compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Unknown arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include compilers: Unknown arg -I/opt/ibmhpc/pecurrent/base/include compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Checking arg -lmpigc4 compilers: Found library: -lmpigc4 compilers: Checking arg -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt compilers: Checking arg icpc compilers: Unknown arg icpc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 12.1.5 compilers: Unknown arg 12.1.5 compilers: Checking arg (gcc compilers: Unknown arg (gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 4.4.7 compilers: Unknown arg 4.4.7 compilers: Checking arg compatibility) compilers: Unknown arg compatibility) compilers: Checking arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom compilers: Unknown arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mcpcom compilers: Checking arg -mP1OPT_version=12.1-intel64 compilers: Unknown arg -mP1OPT_version=12.1-intel64 compilers: Checking arg -mGLOB_diag_enable_disable=D:1572 compilers: Unknown arg -mGLOB_diag_enable_disable=D:1572 compilers: Checking arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=447 compilers: Unknown arg -mGLOB_gcc_version=447 compilers: Checking arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Unknown arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Unknown arg -I/glade/apps/opt/usr/include compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Unknown arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include compilers: Unknown arg -I/opt/ibmhpc/pecurrent/base/include compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -wd1572 compilers: Unknown arg -wd1572 compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -ldl compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg -lcilkrts compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lirc_s compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -ldl compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -D__64BIT__ compilers: Unknown arg -D__64BIT__ compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Checking arg -lmpigc4 compilers: Checking arg -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt" compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Checking arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/icpcqeUciyas_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/icpcqeUciyas_.s compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d8b compilers: Unknown arg -mGLOB_product_id_code=0x22006d8b compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/glade/scratch/fandek/icpc0gSFJBslis compilers: Unknown arg -mIPOPT_source_files_list=/glade/scratch/fandek/icpc0gSFJBslis compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/glade/scratch/fandek/icpckGrFfVscript compilers: Unknown arg -mIPOPT_link_script_file=/glade/scratch/fandek/icpckGrFfVscript compilers: Checking arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.." compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-lnetcdff" compilers: Checking arg "-lnetcdf" compilers: Checking arg "-lhdf5_hl" compilers: Checking arg "-lhdf5" compilers: Checking arg "-lsz" compilers: Checking arg "-lcurl" compilers: Checking arg "-lidn" compilers: Checking arg "-lssl" compilers: Checking arg "-lcrypto" compilers: Checking arg "-lz" compilers: Checking arg "-lgpfs" compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/usr/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-lmpi" compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-lirc" compilers: Checking arg "-lpthread" compilers: Checking arg "-lrt" compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-rpath" compilers: Found -rpath library: /usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-limf" compilers: Checking arg "-lsvml" compilers: Checking arg "-lipgo" compilers: Checking arg "-ldecimal" compilers: Checking arg "-lcilkrts" compilers: Checking arg "-lstdc++" compilers: Checking arg "-lgcc_s" compilers: Checking arg "-lirc_s" compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-ldl" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lnetcdff" compilers: Checking arg "-lnetcdf" compilers: Checking arg "-lhdf5_hl" compilers: Checking arg "-lhdf5" compilers: Checking arg "-lsz" compilers: Checking arg "-lcurl" compilers: Checking arg "-lidn" compilers: Checking arg "-lssl" compilers: Checking arg "-lcrypto" compilers: Checking arg "-lz" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lgpfs" compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-ldl" compilers: Checking arg "--allow-shlib-undefined" compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg "--enable-new-dtags" compilers: Unknown arg --enable-new-dtags compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg "-lmpi" compilers: Checking arg "-lmpigc4" compilers: Checking arg "-ldl" compilers: Checking arg "-lirc" compilers: Checking arg "-lpthread" compilers: Checking arg "-lrt" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-limf" compilers: Checking arg "-lsvml" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Checking arg "-ldecimal" compilers: Checking arg "--as-needed" compilers: Unknown arg --as-needed compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lcilkrts" compilers: Checking arg "--no-as-needed" compilers: Unknown arg --no-as-needed compilers: Checking arg "-lstdc++" compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_s" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "-lgcc" compilers: Skipping system library: -lgcc compilers: Checking arg "-lgcc_s" compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Checking arg "-lc" compilers: Skipping system library: -lc compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icpcaTIvFI.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_icpcaTIvFI.o compilers: Checking arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icpcaTIvFI.o compilers: Unknown arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_icpcaTIvFI.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.c compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.c compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=/glade/scratch/fandek/icpc8qNYa2olis compilers: Unknown arg -mIPOPT_object_files=/glade/scratch/fandek/icpc8qNYa2olis compilers: Checking arg -mIPOPT_assembly_files=/glade/scratch/fandek/icpc2UxwGlalis compilers: Unknown arg -mIPOPT_assembly_files=/glade/scratch/fandek/icpc2UxwGlalis compilers: Checking arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/icpcePqacFelis compilers: Unknown arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/icpcePqacFelis compilers: Checking arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icpcMU9THYeobj compilers: Unknown arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/icpcMU9THYeobj compilers: Checking arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icpcwccKdillis compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/icpcwccKdillis compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -lgpfs compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg -lcilkrts compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc_s compilers: Checking arg -lirc_s compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -ldl compilers: Checking arg --allow-shlib-undefined compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi compilers: Checking arg -lmpigc4 compilers: Checking arg -ldl compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -limf compilers: Checking arg -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Checking arg -ldecimal compilers: Checking arg --as-needed compilers: Unknown arg --as-needed compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lcilkrts compilers: Checking arg --no-as-needed compilers: Unknown arg --no-as-needed compilers: Checking arg -lstdc++ compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Checking arg -lc compilers: Skipping system library: -lc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigc4', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32'] compilers: Check that Cxx libraries can be used from C Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigc4 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:374) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:374) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 1024 stderr: /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc (code 4) Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to /usr/include/c++/4.4.7/c++0x_warning.h(31): catastrophic error: #error directive: This file requires compiler and library support for the upcoming ISO C++ standard, C++0x. This support is currently experimental, and must be enabled with the -std=c++0x or -std=gnu++0x compiler options. #error This file requires compiler and library support for the upcoming \ ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc (code 4) PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:572) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:572) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:631) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:631) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/confc.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:668) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:668) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/confc.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F:2: undefined reference to `d1_chk_' Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:678) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:678) Determine if Fortran handles preprocessing properly Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef dummy fooey #endif end Added FC compiler flag Popping language FC compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:699) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:699) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g -DTesting /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Defined make macro "FC_DEFINE_FLAG" to "-D" Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:716) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:716) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: mpif90 -V Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt Possible ERROR while running linker: stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -v -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 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"/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-limf" "-lsvml" "-lipgo" "-ldecimal" "-lcilkrts" "-lstdc++" "-lgcc_s" "-lirc_s" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" "-rpath" "/glade/apps/opt/usr/lib" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7" "-ldl" "-Bstatic" "-lnetcdff" "-lnetcdf" "-lhdf5_hl" "-lhdf5" "-lsz" "-lcurl" "-lidn" "-lssl" "-lcrypto" "-lz" "-Bdynamic" "-lgpfs" "-rpath" "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32" "-rpath" "/glade/apps/opt/usr/lib" "-ldl" "--allow-shlib-undefined" "--enable-new-dtags" "-rpath" "/opt/ibmhpc/pecurrent/mpich2/intel/lib64" "-rpath" "/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" "-lmpi" "-lmpigf" "-ldl" "-lirc" "-lpthread" "-lrt" "-Bstatic" "-lifport" "-lifcore" "-limf" "-lsvml" "-Bdynamic" "-lm" "-Bstatic" "-lipgo" "-lirc" "-u" "__pthread_once" "-Bdynamic" "-lpthread" "-lc" "-lgcc" "-lgcc_s" "-Bstatic" "-lirc_s" "-Bdynamic" "-ldl" "-lc" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" -mIPOPT_il_in_obj -mIPOPT_ipo_activate_warn=FALSE -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_ifortFSqjFz.o "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 20100205" -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_ifortFSqjFz.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE -mP1OPT_source_file_name=ipo_out.f -mP2OPT_symtab_type_copy=true /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -mIPOPT_object_files=/glade/scratch/fandek/ifortNytFBQolis -mIPOPT_assembly_files=/glade/scratch/fandek/ifortpbZ5x7alis -mIPOPT_generated_tempfiles=/glade/scratch/fandek/ifortrUABuoelis -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/ifortFIX9qFeobj -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/ifortPH5LnWllis ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/usr/lib -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64/for_main.o -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/lib/../lib64 -L/usr/lib/../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. -L/lib64 -L/lib -L/usr/lib64 -L/usr/lib /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /usr/lib/gcc/x86_64-redhat-linux/4.4.7 -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -rpath /glade/apps/opt/usr/lib -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Bdynamic -lgpfs -rpath /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -rpath /glade/apps/opt/usr/lib -ldl --allow-shlib-undefined --enable-new-dtags -rpath /opt/ibmhpc/pecurrent/mpich2/intel/lib64 -rpath /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lmpi -lmpigf -ldl -lirc -lpthread -lrt -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -u __pthread_once -Bdynamic -lpthread -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o Popping language FC compilers: Checking arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort compilers: Unknown arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Found library: -ldl Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Found library directory: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -lnetcdff compilers: Found library: -lnetcdff Library already in C list so skipping in Fortran compilers: Checking arg -lnetcdf compilers: Found library: -lnetcdf Library already in C list so skipping in Fortran compilers: Checking arg -lhdf5_hl compilers: Found library: -lhdf5_hl Library already in C list so skipping in Fortran compilers: Checking arg -lhdf5 compilers: Found library: -lhdf5 Library already in C list so skipping in Fortran compilers: Checking arg -lsz compilers: Found library: -lsz Library already in C list so skipping in Fortran compilers: Checking arg -lcurl compilers: Found library: -lcurl Library already in C list so skipping in Fortran compilers: Checking arg -lidn compilers: Found library: -lidn Library already in C list so skipping in Fortran compilers: Checking arg -lssl compilers: Found library: -lssl Library already in C list so skipping in Fortran compilers: Checking arg -lcrypto compilers: Found library: -lcrypto Library already in C list so skipping in Fortran compilers: Checking arg -lz compilers: Found library: -lz Library already in C list so skipping in Fortran compilers: Checking arg -lgpfs compilers: Found library: -lgpfs Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Found library directory: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Found library directory: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Found library: -lirc Library already in C list so skipping in Fortran compilers: Checking arg -lpthread compilers: Found library: -lpthread Library already in C list so skipping in Fortran compilers: Checking arg -lrt compilers: Found library: -lrt Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Found library directory: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Found library directory: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -limf compilers: Found library: -limf Library already in C list so skipping in Fortran compilers: Checking arg -lsvml compilers: Found library: -lsvml Library already in C list so skipping in Fortran compilers: Checking arg -lipgo compilers: Found library: -lipgo Library already in C list so skipping in Fortran compilers: Checking arg -ldecimal compilers: Found library: -ldecimal Library already in C list so skipping in Fortran compilers: Checking arg -lcilkrts compilers: Found library: -lcilkrts Library already in C list so skipping in Fortran compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_s compilers: Found library: -lgcc_s Library already in C list so skipping in Fortran compilers: Checking arg -lirc_s compilers: Found library: -lirc_s Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Found include directory: /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Found include directory: /glade/apps/opt/usr/include compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Already in lflags: -lnetcdff compilers: Checking arg -lnetcdf compilers: Already in lflags: -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Already in lflags: -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Already in lflags: -lhdf5 compilers: Checking arg -lsz compilers: Already in lflags: -lsz compilers: Checking arg -lcurl compilers: Already in lflags: -lcurl compilers: Checking arg -lidn compilers: Already in lflags: -lidn compilers: Checking arg -lssl compilers: Already in lflags: -lssl compilers: Checking arg -lcrypto compilers: Already in lflags: -lcrypto compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Already in lflags: -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Found include directory: /opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include64 compilers: Found include directory: /opt/ibmhpc/pecurrent/base/include64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpigf compilers: Found library: -lmpigf compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg ifort compilers: Unknown arg ifort compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 12.1.5 compilers: Unknown arg 12.1.5 compilers: Checking arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/fortcom compilers: Unknown arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/fortcom compilers: Checking arg -mP1OPT_version=12.1-intel64 compilers: Unknown arg -mP1OPT_version=12.1-intel64 compilers: Checking arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Unknown arg -mGLOB_diag_file=/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.diag compilers: Checking arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Unknown arg -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 compilers: Checking arg -mGLOB_tune_for_fort compilers: Unknown arg -mGLOB_tune_for_fort compilers: Checking arg -mGLOB_use_fort_dope_vector compilers: Unknown arg -mGLOB_use_fort_dope_vector compilers: Checking arg -mP2OPT_static_promotion compilers: Unknown arg -mP2OPT_static_promotion compilers: Checking arg -mP1OPT_print_version=FALSE compilers: Unknown arg -mP1OPT_print_version=FALSE compilers: Checking arg -mCG_use_gas_got_workaround=F compilers: Unknown arg -mCG_use_gas_got_workaround=F compilers: Checking arg -mP2OPT_align_option_used=TRUE compilers: Unknown arg -mP2OPT_align_option_used=TRUE compilers: Checking arg -mGLOB_gcc_version=447 compilers: Unknown arg -mGLOB_gcc_version=447 compilers: Checking arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Unknown arg "-mGLOB_options_string=-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Found include directory: /glade/apps/opt/usr/include compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Found include directory: /opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include64 compilers: Found include directory: /opt/ibmhpc/pecurrent/base/include64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -g compilers: Unknown arg -g compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -lnetcdff compilers: Already in lflags: -lnetcdff compilers: Checking arg -lnetcdf compilers: Already in lflags: -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Already in lflags: -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Already in lflags: -lhdf5 compilers: Checking arg -lsz compilers: Already in lflags: -lsz compilers: Checking arg -lcurl compilers: Already in lflags: -lcurl compilers: Checking arg -lidn compilers: Already in lflags: -lidn compilers: Checking arg -lssl compilers: Already in lflags: -lssl compilers: Checking arg -lcrypto compilers: Already in lflags: -lcrypto compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -lgpfs compilers: Already in lflags: -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -ldecimal compilers: Already in lflags: -ldecimal compilers: Checking arg -lcilkrts compilers: Already in lflags: -lcilkrts compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Unknown arg -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Unknown arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Already in lflags: -lnetcdff compilers: Checking arg -lnetcdf compilers: Already in lflags: -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Already in lflags: -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Already in lflags: -lhdf5 compilers: Checking arg -lsz compilers: Already in lflags: -lsz compilers: Checking arg -lcurl compilers: Already in lflags: -lcurl compilers: Checking arg -lidn compilers: Already in lflags: -lidn compilers: Checking arg -lssl compilers: Already in lflags: -lssl compilers: Checking arg -lcrypto compilers: Already in lflags: -lcrypto compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -Wl,-Bdynamic compilers: Unknown arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Already in lflags: -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Unknown arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -m64 compilers: Unknown arg -m64 compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Unknown arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Unknown arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Unknown arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Unknown arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpigf compilers: Already in lflags: -lmpigf compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrt" compilers: Already in lflags: -lrt compilers: Checking arg -mGLOB_position_independent_code compilers: Unknown arg -mGLOB_position_independent_code compilers: Checking arg -mGLOB_preemption_model=3 compilers: Unknown arg -mGLOB_preemption_model=3 compilers: Checking arg -mGLOB_cxx_limited_range=FALSE compilers: Unknown arg -mGLOB_cxx_limited_range=FALSE compilers: Checking arg -mCG_extend_parms=FALSE compilers: Unknown arg -mCG_extend_parms=FALSE compilers: Checking arg -mP3OPT_emit_line_numbers compilers: Unknown arg -mP3OPT_emit_line_numbers compilers: Checking arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Unknown arg -mGLOB_debug_target=GLOB_DEBUG_TARGET_ALL compilers: Checking arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Unknown arg -mGLOB_debug_format=GLOB_DEBUG_FORMAT_DWARF20 compilers: Checking arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/ifortVzR6a2as_.s compilers: Unknown arg -mGLOB_as_output_backup_file_name=/glade/scratch/fandek/ifortVzR6a2as_.s compilers: Checking arg -mIPOPT_activate compilers: Unknown arg -mIPOPT_activate compilers: Checking arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Unknown arg -mGLOB_machine_model=GLOB_MACHINE_MODEL_EFI2 compilers: Checking arg -mGLOB_product_id_code=0x22006d8c compilers: Unknown arg -mGLOB_product_id_code=0x22006d8c compilers: Checking arg -mCG_bnl_movbe=T compilers: Unknown arg -mCG_bnl_movbe=T compilers: Checking arg -mP3OPT_use_mspp_call_convention compilers: Unknown arg -mP3OPT_use_mspp_call_convention compilers: Checking arg -mP2OPT_subs_out_of_bound=FALSE compilers: Unknown arg -mP2OPT_subs_out_of_bound=FALSE compilers: Checking arg -mGLOB_ansi_alias compilers: Unknown arg -mGLOB_ansi_alias compilers: Checking arg -mPGOPTI_value_profile_use=T compilers: Unknown arg -mPGOPTI_value_profile_use=T compilers: Checking arg -mP2OPT_il0_array_sections=TRUE compilers: Unknown arg -mP2OPT_il0_array_sections=TRUE compilers: Checking arg -mP2OPT_hlo compilers: Unknown arg -mP2OPT_hlo compilers: Checking arg -mP2OPT_hpo_rtt_control=0 compilers: Unknown arg -mP2OPT_hpo_rtt_control=0 compilers: Checking arg -mIPOPT_args_in_regs=0 compilers: Unknown arg -mIPOPT_args_in_regs=0 compilers: Checking arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Unknown arg -mP2OPT_disam_assume_nonstd_intent_in=FALSE compilers: Checking arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Unknown arg -mGLOB_imf_mapping_library=/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/libiml_attr.so compilers: Checking arg -mIPOPT_link compilers: Unknown arg -mIPOPT_link compilers: Checking arg -mIPOPT_ipo_activate compilers: Unknown arg -mIPOPT_ipo_activate compilers: Checking arg -mIPOPT_mo_activate compilers: Unknown arg -mIPOPT_mo_activate compilers: Checking arg -mIPOPT_source_files_list=/glade/scratch/fandek/ifortPZNqkdslis compilers: Unknown arg -mIPOPT_source_files_list=/glade/scratch/fandek/ifortPZNqkdslis compilers: Checking arg -mIPOPT_mo_global_data compilers: Unknown arg -mIPOPT_mo_global_data compilers: Checking arg -mIPOPT_link_script_file=/glade/scratch/fandek/ifortxO07guscript compilers: Unknown arg -mIPOPT_link_script_file=/glade/scratch/fandek/ifortxO07guscript compilers: Checking arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mIPOPT_link_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg "-mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o" compilers: Unknown arg -mIPOPT_cmdline_link="/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg "--eh-frame-hdr" compilers: Unknown arg --eh-frame-hdr compilers: Checking arg "--build-id" compilers: Unknown arg --build-id compilers: Checking arg "-dynamic-linker" compilers: Unknown arg -dynamic-linker compilers: Checking arg "/lib64/ld-linux-x86-64.so.2" compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-L/glade/apps/opt/usr/lib" compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg "-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64" compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-o" compilers: Unknown arg -o compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64/for_main.o" compilers: Unknown arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64/for_main.o compilers: Checking arg "-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64" compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7" compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64" compilers: Checking arg "-L/lib/../lib64" compilers: Checking arg "-L/usr/lib/../lib64" compilers: Checking arg "-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.." compilers: Checking arg "-L/lib64" compilers: Checking arg "-L/lib" compilers: Checking arg "-L/usr/lib64" compilers: Checking arg "-L/usr/lib" compilers: Checking arg "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o" compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg "-lnetcdff" compilers: Already in lflags: -lnetcdff compilers: Checking arg "-lnetcdf" compilers: Already in lflags: -lnetcdf compilers: Checking arg "-lhdf5_hl" compilers: Already in lflags: -lhdf5_hl compilers: Checking arg "-lhdf5" compilers: Already in lflags: -lhdf5 compilers: Checking arg "-lsz" compilers: Already in lflags: -lsz compilers: Checking arg "-lcurl" compilers: Already in lflags: -lcurl compilers: Checking arg "-lidn" compilers: Already in lflags: -lidn compilers: Checking arg "-lssl" compilers: Already in lflags: -lssl compilers: Checking arg "-lcrypto" compilers: Already in lflags: -lcrypto compilers: Checking arg "-lz" compilers: Already in lflags: -lz compilers: Checking arg "-lgpfs" compilers: Already in lflags: -lgpfs compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/apps/opt/usr/lib compilers: Checking arg "-rpath" compilers: Found -rpath library: /opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg "-lmpi" compilers: Already in lflags: -lmpi compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-lirc" compilers: Already in lflags: -lirc compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Found -rpath library: /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg "-rpath" compilers: Found -rpath library: /usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Found -rpath library: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-lipgo" compilers: Already in lflags: -lipgo compilers: Checking arg "-ldecimal" compilers: Already in lflags: -ldecimal compilers: Checking arg "-lcilkrts" compilers: Already in lflags: -lcilkrts compilers: Checking arg "-lstdc++" compilers: Already in lflags: -lstdc++ compilers: Checking arg "-lgcc_s" compilers: Already in lflags: -lgcc_s compilers: Checking arg "-lirc_s" compilers: Already in lflags: -lirc_s compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lnetcdff" compilers: Already in lflags: -lnetcdff compilers: Checking arg "-lnetcdf" compilers: Already in lflags: -lnetcdf compilers: Checking arg "-lhdf5_hl" compilers: Already in lflags: -lhdf5_hl compilers: Checking arg "-lhdf5" compilers: Already in lflags: -lhdf5 compilers: Checking arg "-lsz" compilers: Already in lflags: -lsz compilers: Checking arg "-lcurl" compilers: Already in lflags: -lcurl compilers: Checking arg "-lidn" compilers: Already in lflags: -lidn compilers: Checking arg "-lssl" compilers: Already in lflags: -lssl compilers: Checking arg "-lcrypto" compilers: Already in lflags: -lcrypto compilers: Checking arg "-lz" compilers: Already in lflags: -lz compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lgpfs" compilers: Already in lflags: -lgpfs compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "--allow-shlib-undefined" compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg "--enable-new-dtags" compilers: Unknown arg --enable-new-dtags compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-rpath" compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg "-lmpi" compilers: Already in lflags: -lmpi compilers: Checking arg "-lmpigf" compilers: Already in lflags: -lmpigf compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lirc" compilers: Already in lflags: -lirc compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lrt" compilers: Already in lflags: -lrt compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lifport" compilers: Found library: -lifport compilers: Checking arg "-lifcore" compilers: Found library: -lifcore compilers: Checking arg "-limf" compilers: Already in lflags: -limf compilers: Checking arg "-lsvml" compilers: Already in lflags: -lsvml compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lm" compilers: Found library: -lm compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lipgo" compilers: Already in lflags: -lipgo compilers: Checking arg "-lirc" compilers: Already in lflags: -lirc compilers: Checking arg "-u" compilers: Unknown arg -u compilers: Checking arg "__pthread_once" compilers: Unknown arg __pthread_once compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-lpthread" compilers: Already in lflags: -lpthread compilers: Checking arg "-lc" compilers: Found system library therefor skipping: -lc compilers: Checking arg "-lgcc" compilers: Found system library therefor skipping: -lgcc compilers: Checking arg "-lgcc_s" compilers: Already in lflags: -lgcc_s compilers: Checking arg "-Bstatic" compilers: Unknown arg -Bstatic compilers: Checking arg "-lirc_s" compilers: Already in lflags: -lirc_s compilers: Checking arg "-Bdynamic" compilers: Unknown arg -Bdynamic compilers: Checking arg "-ldl" compilers: Already in lflags: -ldl compilers: Checking arg "-lc" compilers: Found system library therefor skipping: -lc compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o"" compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Checking arg -mIPOPT_il_in_obj compilers: Unknown arg -mIPOPT_il_in_obj compilers: Checking arg -mIPOPT_ipo_activate_warn=FALSE compilers: Unknown arg -mIPOPT_ipo_activate_warn=FALSE compilers: Checking arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_ifortFSqjFz.o compilers: Unknown arg -mIPOPT_obj_output_file_name=/glade/scratch/fandek/ipo_ifortFSqjFz.o compilers: Checking arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Unknown arg "-mGLOB_linker_version=2.20.51.0.2-5.36.el6 compilers: Checking arg 20100205" compilers: Unknown arg 20100205 compilers: Checking arg -mGLOB_long_size_64 compilers: Unknown arg -mGLOB_long_size_64 compilers: Checking arg -mGLOB_routine_pointer_size_64 compilers: Unknown arg -mGLOB_routine_pointer_size_64 compilers: Checking arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Unknown arg -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS compilers: Checking arg -mGLOB_async_unwind_tables=TRUE compilers: Unknown arg -mGLOB_async_unwind_tables=TRUE compilers: Checking arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_ifortFSqjFz.o compilers: Unknown arg -mGLOB_obj_output_file=/glade/scratch/fandek/ipo_ifortFSqjFz.o compilers: Checking arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Unknown arg -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_NONE compilers: Checking arg -mP1OPT_source_file_name=ipo_out.f compilers: Unknown arg -mP1OPT_source_file_name=ipo_out.f compilers: Checking arg -mP2OPT_symtab_type_copy=true compilers: Unknown arg -mP2OPT_symtab_type_copy=true compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -mIPOPT_object_files=/glade/scratch/fandek/ifortNytFBQolis compilers: Unknown arg -mIPOPT_object_files=/glade/scratch/fandek/ifortNytFBQolis compilers: Checking arg -mIPOPT_assembly_files=/glade/scratch/fandek/ifortpbZ5x7alis compilers: Unknown arg -mIPOPT_assembly_files=/glade/scratch/fandek/ifortpbZ5x7alis compilers: Checking arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/ifortrUABuoelis compilers: Unknown arg -mIPOPT_generated_tempfiles=/glade/scratch/fandek/ifortrUABuoelis compilers: Checking arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/ifortFIX9qFeobj compilers: Unknown arg -mIPOPT_embedded_object_base_name=/glade/scratch/fandek/ifortFIX9qFeobj compilers: Checking arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/ifortPH5LnWllis compilers: Unknown arg -mIPOPT_cmdline_link_new_name=/glade/scratch/fandek/ifortPH5LnWllis compilers: Checking arg ld compilers: Unknown arg ld compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o compilers: Checking arg --eh-frame-hdr compilers: Unknown arg --eh-frame-hdr compilers: Checking arg --build-id compilers: Unknown arg --build-id compilers: Checking arg -dynamic-linker compilers: Unknown arg -dynamic-linker compilers: Checking arg /lib64/ld-linux-x86-64.so.2 compilers: Unknown arg /lib64/ld-linux-x86-64.so.2 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Already in lflags so skipping: -L/glade/apps/opt/usr/lib compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Already in lflags so skipping: -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest compilers: Checking arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64/for_main.o compilers: Unknown arg /glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64/for_main.o compilers: Checking arg -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Already in lflags so skipping: -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Already in lflags so skipping: -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 compilers: Checking arg -L/lib/../lib64 compilers: Checking arg -L/usr/lib/../lib64 compilers: Checking arg -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../.. compilers: Checking arg -L/lib64 compilers: Checking arg -L/lib compilers: Checking arg -L/usr/lib64 compilers: Checking arg -L/usr/lib compilers: Checking arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Unknown arg /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lnetcdff compilers: Already in lflags: -lnetcdff compilers: Checking arg -lnetcdf compilers: Already in lflags: -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Already in lflags: -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Already in lflags: -lhdf5 compilers: Checking arg -lsz compilers: Already in lflags: -lsz compilers: Checking arg -lcurl compilers: Already in lflags: -lcurl compilers: Checking arg -lidn compilers: Already in lflags: -lidn compilers: Checking arg -lssl compilers: Already in lflags: -lssl compilers: Checking arg -lcrypto compilers: Already in lflags: -lcrypto compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -lgpfs compilers: Already in lflags: -lgpfs compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -ldecimal compilers: Already in lflags: -ldecimal compilers: Checking arg -lcilkrts compilers: Already in lflags: -lcilkrts compilers: Checking arg -lstdc++ compilers: Already in lflags: -lstdc++ compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lnetcdff compilers: Already in lflags: -lnetcdff compilers: Checking arg -lnetcdf compilers: Already in lflags: -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Already in lflags: -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Already in lflags: -lhdf5 compilers: Checking arg -lsz compilers: Already in lflags: -lsz compilers: Checking arg -lcurl compilers: Already in lflags: -lcurl compilers: Checking arg -lidn compilers: Already in lflags: -lidn compilers: Checking arg -lssl compilers: Already in lflags: -lssl compilers: Checking arg -lcrypto compilers: Already in lflags: -lcrypto compilers: Checking arg -lz compilers: Already in lflags: -lz compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lgpfs compilers: Already in lflags: -lgpfs compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg --allow-shlib-undefined compilers: Unknown arg --allow-shlib-undefined compilers: Checking arg --enable-new-dtags compilers: Unknown arg --enable-new-dtags compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lmpigf compilers: Already in lflags: -lmpigf compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lrt compilers: Already in lflags: -lrt compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lifport compilers: Already in lflags: -lifport compilers: Checking arg -lifcore compilers: Already in lflags: -lifcore compilers: Checking arg -limf compilers: Already in lflags: -limf compilers: Checking arg -lsvml compilers: Already in lflags: -lsvml compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lipgo compilers: Already in lflags: -lipgo compilers: Checking arg -lirc compilers: Already in lflags: -lirc compilers: Checking arg -u compilers: Unknown arg -u compilers: Checking arg __pthread_once compilers: Unknown arg __pthread_once compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -lpthread compilers: Already in lflags: -lpthread compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lgcc_s compilers: Already in lflags: -lgcc_s compilers: Checking arg -Bstatic compilers: Unknown arg -Bstatic compilers: Checking arg -lirc_s compilers: Already in lflags: -lirc_s compilers: Checking arg -Bdynamic compilers: Unknown arg -Bdynamic compilers: Checking arg -ldl compilers: Already in lflags: -ldl compilers: Checking arg -lc compilers: Found system library therefor skipping: -lc compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o compilers: Checking arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Unknown arg /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lpetsc-ufod4vtr9mqHvKIQiVAm Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest Popping language Cxx compilers: Fortran libraries can be used from C++ ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1062) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1062) Check that Fortran can be linked against C++ Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/cxxobj.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 /glade/scratch/fandek/petsc-aqKo9_/config.compilers/confc.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1097) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1097) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1110) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1110) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1130) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1130) Check for F90 array interfaces Executing: uname -s stdout: Linux Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/fooobj.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest stdout: arrays [0x687400 0x687400 0x687400] arrays [0x6873a0 0x6874a0 0x6873a0] pointers do not match! [0xffffffff 0x19] [(nil)] ERROR while running executable: Could not execute "/glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest": arrays [0x687400 0x687400 0x687400] arrays [0x6873a0 0x6874a0 0x6873a0] pointers do not match! [0xffffffff 0x19] [(nil)] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1217) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1217) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers/confdir -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers/confdir -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/configtest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1283) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1283) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -module /glade/scratch/fandek/petsc-aqKo9_/config.compilers/confdir -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/glade/p/work/fandek/petsc/config/BuildSystem/config/compilers.py:1437) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1437) ================================================================================ TEST configureClosure from config.utilities.closure(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure/conftest.c(6): error: expected an identifier int (^closure)(int);; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/glade/p/work/fandek/petsc/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/string.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/string.h" 2 3 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 124 "/usr/include/string.h" 3 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 209 "/usr/include/string.h" 3 # 235 "/usr/include/string.h" 3 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 280 "/usr/include/string.h" 3 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 377 "/usr/include/string.h" 3 # 395 "/usr/include/string.h" 3 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 442 "/usr/include/string.h" 3 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 534 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 555 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 610 "/usr/include/string.h" 3 # 639 "/usr/include/string.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 274 "/usr/include/stdlib.h" 3 # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (__const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 932 "/usr/include/stdlib.h" 3 # 943 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 5 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 40 "/usr/include/sys/stat.h" 2 3 # 63 "/usr/include/sys/stat.h" 3 # 82 "/usr/include/sys/stat.h" 3 # 104 "/usr/include/sys/stat.h" 3 # 1 "/usr/include/bits/stat.h" 1 3 # 39 "/usr/include/bits/stat.h" 3 struct stat { __dev_t st_dev; __ino_t st_ino; # 61 "/usr/include/bits/stat.h" 3 __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 long int __unused[3]; # 115 "/usr/include/bits/stat.h" 3 }; # 173 "/usr/include/bits/stat.h" 3 # 192 "/usr/include/bits/stat.h" 3 # 207 "/usr/include/bits/stat.h" 3 # 108 "/usr/include/sys/stat.h" 2 3 # 126 "/usr/include/sys/stat.h" 3 # 141 "/usr/include/sys/stat.h" 3 # 152 "/usr/include/sys/stat.h" 3 extern int stat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int fstat (int __fd, struct stat *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 234 "/usr/include/sys/stat.h" 3 extern int fstatat (int __fd, __const char *__restrict __file, struct stat *__restrict __buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 253 "/usr/include/sys/stat.h" 3 # 260 "/usr/include/sys/stat.h" 3 extern int lstat (__const char *__restrict __file, struct stat *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 283 "/usr/include/sys/stat.h" 3 extern int chmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lchmod (__const char *__file, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int fchmod (int __fd, __mode_t __mode) __attribute__ ((__nothrow__)); extern int fchmodat (int __fd, __const char *__file, __mode_t __mode, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern __mode_t umask (__mode_t __mask) __attribute__ ((__nothrow__)); extern int mkdir (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mkdirat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int mknod (__const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mknodat (int __fd, __const char *__path, __mode_t __mode, __dev_t __dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int mkfifo (__const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int mkfifoat (int __fd, __const char *__path, __mode_t __mode) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int utimensat (int __fd, __const char *__path, __const struct timespec __times[2], int __flags) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int futimens (int __fd, __const struct timespec __times[2]) __attribute__ ((__nothrow__)); # 398 "/usr/include/sys/stat.h" 3 extern int __fxstat (int __ver, int __fildes, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int __xstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __lxstat (int __ver, __const char *__filename, struct stat *__stat_buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int __fxstatat (int __ver, int __fildes, __const char *__filename, struct stat *__stat_buf, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))); # 432 "/usr/include/sys/stat.h" 3 # 444 "/usr/include/sys/stat.h" 3 extern int __xmknod (int __ver, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int __xmknodat (int __ver, int __fd, __const char *__path, __mode_t __mode, __dev_t *__dev) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 5))); # 535 "/usr/include/sys/stat.h" 3 # 6 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/time.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 39 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 43 "/usr/include/bits/time.h" 3 # 43 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 211 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 401 "/usr/include/time.h" 3 # 416 "/usr/include/time.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 typedef __time_t time_t; # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 28 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 # 52 "/usr/include/sys/time.h" 3 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 159 "/usr/include/sys/time.h" 3 # 190 "/usr/include/sys/time.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 1 3 # 1 "/usr/include/math.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_val.h" 1 3 # 35 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_valf.h" 1 3 # 37 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_vall.h" 1 3 # 38 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/inf.h" 1 3 # 41 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/nan.h" 1 3 # 44 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathdef.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/mathdef.h" 2 3 typedef float float_t; typedef double double_t; # 43 "/usr/include/bits/mathdef.h" 3 # 48 "/usr/include/math.h" 2 3 # 66 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern double acos (double __x) __attribute__ ((__nothrow__)); extern double __acos (double __x) __attribute__ ((__nothrow__)); extern double asin (double __x) __attribute__ ((__nothrow__)); extern double __asin (double __x) __attribute__ ((__nothrow__)); extern double atan (double __x) __attribute__ ((__nothrow__)); extern double __atan (double __x) __attribute__ ((__nothrow__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double cos (double __x) __attribute__ ((__nothrow__)); extern double __cos (double __x) __attribute__ ((__nothrow__)); extern double sin (double __x) __attribute__ ((__nothrow__)); extern double __sin (double __x) __attribute__ ((__nothrow__)); extern double tan (double __x) __attribute__ ((__nothrow__)); extern double __tan (double __x) __attribute__ ((__nothrow__)); extern double cosh (double __x) __attribute__ ((__nothrow__)); extern double __cosh (double __x) __attribute__ ((__nothrow__)); extern double sinh (double __x) __attribute__ ((__nothrow__)); extern double __sinh (double __x) __attribute__ ((__nothrow__)); extern double tanh (double __x) __attribute__ ((__nothrow__)); extern double __tanh (double __x) __attribute__ ((__nothrow__)); extern double acosh (double __x) __attribute__ ((__nothrow__)); extern double __acosh (double __x) __attribute__ ((__nothrow__)); extern double asinh (double __x) __attribute__ ((__nothrow__)); extern double __asinh (double __x) __attribute__ ((__nothrow__)); extern double atanh (double __x) __attribute__ ((__nothrow__)); extern double __atanh (double __x) __attribute__ ((__nothrow__)); extern double exp (double __x) __attribute__ ((__nothrow__)); extern double __exp (double __x) __attribute__ ((__nothrow__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double log (double __x) __attribute__ ((__nothrow__)); extern double __log (double __x) __attribute__ ((__nothrow__)); extern double log10 (double __x) __attribute__ ((__nothrow__)); extern double __log10 (double __x) __attribute__ ((__nothrow__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern double expm1 (double __x) __attribute__ ((__nothrow__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__)); extern double log1p (double __x) __attribute__ ((__nothrow__)); extern double __log1p (double __x) __attribute__ ((__nothrow__)); extern double logb (double __x) __attribute__ ((__nothrow__)); extern double __logb (double __x) __attribute__ ((__nothrow__)); extern double exp2 (double __x) __attribute__ ((__nothrow__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__)); extern double log2 (double __x) __attribute__ ((__nothrow__)); extern double __log2 (double __x) __attribute__ ((__nothrow__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double sqrt (double __x) __attribute__ ((__nothrow__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double cbrt (double __x) __attribute__ ((__nothrow__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__)); extern double ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern int __isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double significand (double __x) __attribute__ ((__nothrow__)); extern double __significand (double __x) __attribute__ ((__nothrow__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__)); extern double __j0 (double) __attribute__ ((__nothrow__)); extern double j1 (double) __attribute__ ((__nothrow__)); extern double __j1 (double) __attribute__ ((__nothrow__)); extern double jn (int, double) __attribute__ ((__nothrow__)); extern double __jn (int, double) __attribute__ ((__nothrow__)); extern double y0 (double) __attribute__ ((__nothrow__)); extern double __y0 (double) __attribute__ ((__nothrow__)); extern double y1 (double) __attribute__ ((__nothrow__)); extern double __y1 (double) __attribute__ ((__nothrow__)); extern double yn (int, double) __attribute__ ((__nothrow__)); extern double __yn (int, double) __attribute__ ((__nothrow__)); extern double erf (double) __attribute__ ((__nothrow__)); extern double __erf (double) __attribute__ ((__nothrow__)); extern double erfc (double) __attribute__ ((__nothrow__)); extern double __erfc (double) __attribute__ ((__nothrow__)); extern double lgamma (double) __attribute__ ((__nothrow__)); extern double __lgamma (double) __attribute__ ((__nothrow__)); extern double tgamma (double) __attribute__ ((__nothrow__)); extern double __tgamma (double) __attribute__ ((__nothrow__)); extern double gamma (double) __attribute__ ((__nothrow__)); extern double __gamma (double) __attribute__ ((__nothrow__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double rint (double __x) __attribute__ ((__nothrow__)); extern double __rint (double __x) __attribute__ ((__nothrow__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogb (double __x) __attribute__ ((__nothrow__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__)); extern double round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrint (double __x) __attribute__ ((__nothrow__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__)); extern long int lround (double __x) __attribute__ ((__nothrow__)); extern long int __lround (double __x) __attribute__ ((__nothrow__)); extern long long int llround (double __x) __attribute__ ((__nothrow__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__)); # 72 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern float acosf (float __x) __attribute__ ((__nothrow__)); extern float __acosf (float __x) __attribute__ ((__nothrow__)); extern float asinf (float __x) __attribute__ ((__nothrow__)); extern float __asinf (float __x) __attribute__ ((__nothrow__)); extern float atanf (float __x) __attribute__ ((__nothrow__)); extern float __atanf (float __x) __attribute__ ((__nothrow__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float cosf (float __x) __attribute__ ((__nothrow__)); extern float __cosf (float __x) __attribute__ ((__nothrow__)); extern float sinf (float __x) __attribute__ ((__nothrow__)); extern float __sinf (float __x) __attribute__ ((__nothrow__)); extern float tanf (float __x) __attribute__ ((__nothrow__)); extern float __tanf (float __x) __attribute__ ((__nothrow__)); extern float coshf (float __x) __attribute__ ((__nothrow__)); extern float __coshf (float __x) __attribute__ ((__nothrow__)); extern float sinhf (float __x) __attribute__ ((__nothrow__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__)); extern float tanhf (float __x) __attribute__ ((__nothrow__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__)); extern float acoshf (float __x) __attribute__ ((__nothrow__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__)); extern float asinhf (float __x) __attribute__ ((__nothrow__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__)); extern float atanhf (float __x) __attribute__ ((__nothrow__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__)); extern float expf (float __x) __attribute__ ((__nothrow__)); extern float __expf (float __x) __attribute__ ((__nothrow__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float logf (float __x) __attribute__ ((__nothrow__)); extern float __logf (float __x) __attribute__ ((__nothrow__)); extern float log10f (float __x) __attribute__ ((__nothrow__)); extern float __log10f (float __x) __attribute__ ((__nothrow__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern float expm1f (float __x) __attribute__ ((__nothrow__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__)); extern float log1pf (float __x) __attribute__ ((__nothrow__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__)); extern float logbf (float __x) __attribute__ ((__nothrow__)); extern float __logbf (float __x) __attribute__ ((__nothrow__)); extern float exp2f (float __x) __attribute__ ((__nothrow__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__)); extern float log2f (float __x) __attribute__ ((__nothrow__)); extern float __log2f (float __x) __attribute__ ((__nothrow__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__)); extern float ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float significandf (float __x) __attribute__ ((__nothrow__)); extern float __significandf (float __x) __attribute__ ((__nothrow__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__)); extern float __j0f (float) __attribute__ ((__nothrow__)); extern float j1f (float) __attribute__ ((__nothrow__)); extern float __j1f (float) __attribute__ ((__nothrow__)); extern float jnf (int, float) __attribute__ ((__nothrow__)); extern float __jnf (int, float) __attribute__ ((__nothrow__)); extern float y0f (float) __attribute__ ((__nothrow__)); extern float __y0f (float) __attribute__ ((__nothrow__)); extern float y1f (float) __attribute__ ((__nothrow__)); extern float __y1f (float) __attribute__ ((__nothrow__)); extern float ynf (int, float) __attribute__ ((__nothrow__)); extern float __ynf (int, float) __attribute__ ((__nothrow__)); extern float erff (float) __attribute__ ((__nothrow__)); extern float __erff (float) __attribute__ ((__nothrow__)); extern float erfcf (float) __attribute__ ((__nothrow__)); extern float __erfcf (float) __attribute__ ((__nothrow__)); extern float lgammaf (float) __attribute__ ((__nothrow__)); extern float __lgammaf (float) __attribute__ ((__nothrow__)); extern float tgammaf (float) __attribute__ ((__nothrow__)); extern float __tgammaf (float) __attribute__ ((__nothrow__)); extern float gammaf (float) __attribute__ ((__nothrow__)); extern float __gammaf (float) __attribute__ ((__nothrow__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float rintf (float __x) __attribute__ ((__nothrow__)); extern float __rintf (float __x) __attribute__ ((__nothrow__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__)); # 95 "/usr/include/math.h" 2 3 # 129 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern long double acosl (long double __x) __attribute__ ((__nothrow__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double expl (long double __x) __attribute__ ((__nothrow__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double logl (long double __x) __attribute__ ((__nothrow__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern long double expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__)); extern long double __j0l (long double) __attribute__ ((__nothrow__)); extern long double j1l (long double) __attribute__ ((__nothrow__)); extern long double __j1l (long double) __attribute__ ((__nothrow__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__)); extern long double y0l (long double) __attribute__ ((__nothrow__)); extern long double __y0l (long double) __attribute__ ((__nothrow__)); extern long double y1l (long double) __attribute__ ((__nothrow__)); extern long double __y1l (long double) __attribute__ ((__nothrow__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__)); extern long double erfl (long double) __attribute__ ((__nothrow__)); extern long double __erfl (long double) __attribute__ ((__nothrow__)); extern long double erfcl (long double) __attribute__ ((__nothrow__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__)); extern long double lgammal (long double) __attribute__ ((__nothrow__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__)); extern long double tgammal (long double) __attribute__ ((__nothrow__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__)); extern long double gammal (long double) __attribute__ ((__nothrow__)); extern long double __gammal (long double) __attribute__ ((__nothrow__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); # 142 "/usr/include/math.h" 2 3 extern int signgam; enum { FP_NAN, FP_INFINITE, FP_ZERO, FP_SUBNORMAL, FP_NORMAL }; # 223 "/usr/include/math.h" 3 # 235 "/usr/include/math.h" 3 # 247 "/usr/include/math.h" 3 # 263 "/usr/include/math.h" 3 # 275 "/usr/include/math.h" 3 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 341 "/usr/include/math.h" 3 # 353 "/usr/include/math.h" 3 # 371 "/usr/include/math.h" 3 # 390 "/usr/include/math.h" 3 # 413 "/usr/include/math.h" 3 # 429 "/usr/include/math.h" 3 # 437 "/usr/include/math.h" 3 # 445 "/usr/include/math.h" 3 # 453 "/usr/include/math.h" 3 # 461 "/usr/include/math.h" 3 # 469 "/usr/include/math.h" 3 # 20 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 2 3 # 36 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 60 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 81 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 99 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 108 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 119 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 131 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 160 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 174 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 199 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 215 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern int fpclassifyf ( float __x ) ; extern int fpclassify ( double __x ) ; extern int fpclassifyd ( double __x ) ; extern int fpclassifyl ( long double __x ) ; extern int __fpclassifyf ( float __x ) ; extern int __fpclassify ( double __x ) ; extern int __fpclassifyd ( double __x ) ; extern int __fpclassifyl ( long double __x ) ; extern int isinff ( float __x ) ; extern int isinf ( double __x ) ; extern int isinfd ( double __x ) ; extern int isinfl ( long double __x ) ; extern int __isinff ( float __x ) ; extern int __isinf ( double __x ) ; extern int __isinfd ( double __x ) ; extern int __isinfl ( long double __x ) ; extern int isnanf ( float __x ) ; extern int isnan ( double __x ) ; extern int isnand ( double __x ) ; extern int isnanl ( long double __x ) ; extern int __isnanf ( float __x ) ; extern int __isnan ( double __x ) ; extern int __isnand ( double __x ) ; extern int __isnanl ( long double __x ) ; extern int isnormalf ( float __x ) ; extern int isnormal ( double __x ) ; extern int isnormald ( double __x ) ; extern int isnormall ( long double __x ) ; extern int __isnormalf ( float __x ) ; extern int __isnormal ( double __x ) ; extern int __isnormald ( double __x ) ; extern int __isnormall ( long double __x ) ; extern int isfinitef ( float __x ) ; extern int isfinite ( double __x ) ; extern int isfinited ( double __x ) ; extern int isfinitel ( long double __x ) ; extern int __isfinitef ( float __x ) ; extern int __isfinite ( double __x ) ; extern int __isfinited ( double __x ) ; extern int __isfinitel ( long double __x ) ; extern int finitef ( float __x ) ; extern int finite ( double __x ) ; extern int finited ( double __x ) ; extern int finitel ( long double __x ) ; extern int __finitef ( float __x ) ; extern int __finite ( double __x ) ; extern int __finited ( double __x ) ; extern int __finitel ( long double __x ) ; extern int signbitf ( float __x ) ; extern int signbit ( double __x ) ; extern int signbitd ( double __x ) ; extern int signbitl ( long double __x ) ; extern int __signbitf ( float __x ) ; extern int __signbit ( double __x ) ; extern int __signbitd ( double __x ) ; extern int __signbitl ( long double __x ) ; # 307 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 328 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 335 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern int isgreaterf( float __xf, float __yf ); extern int isgreater( double __xd, double __yd ); extern int isgreaterl( long double __xl, long double __yl ); extern int __isgreaterf( float __xf, float __yf ); extern int __isgreater( double __xd, double __yd ); extern int __isgreaterl( long double __xl, long double __yl ); extern int isgreaterequalf( float __xf, float __yf ); extern int isgreaterequal( double __xd, double __yd ); extern int isgreaterequall( long double __xl, long double __yl ); extern int __isgreaterequalf( float __xf, float __yf ); extern int __isgreaterequal( double __xd, double __yd ); extern int __isgreaterequall( long double __xl, long double __yl ); extern int islessf( float __xf, float __yf ); extern int isless( double __xd, double __yd ); extern int islessl( long double __xl, long double __yl ); extern int __islessf( float __xf, float __yf ); extern int __isless( double __xd, double __yd ); extern int __islessl( long double __xl, long double __yl ); extern int islessequalf( float __xf, float __yf ); extern int islessequal( double __xd, double __yd ); extern int islessequall( long double __xl, long double __yl ); extern int __islessequalf( float __xf, float __yf ); extern int __islessequal( double __xd, double __yd ); extern int __islessequall( long double __xl, long double __yl ); extern int islessgreaterf( float __xf, float __yf ); extern int islessgreater( double __xd, double __yd ); extern int islessgreaterl( long double __xl, long double __yl ); extern int __islessgreaterf( float __xf, float __yf ); extern int __islessgreater( double __xd, double __yd ); extern int __islessgreaterl( long double __xl, long double __yl ); extern int isunorderedf( float __xf, float __yf ); extern int isunordered( double __xd, double __yd ); extern int isunorderedl( long double __xl, long double __yl ); extern int __isunorderedf( float __xf, float __yf ); extern int __isunordered( double __xd, double __yd ); extern int __isunorderedl( long double __xl, long double __yl ); # 389 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 396 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 412 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 422 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double cot( double __x ); extern float cotf( float __x ); extern long double cotl( long double __x ); extern double cosd( double __x ); extern float cosdf( float __x ); extern long double cosdl( long double __x ); extern double sind( double __x ); extern float sindf( float __x ); extern long double sindl( long double __x ); extern double tand( double __x ); extern float tandf( float __x ); extern long double tandl( long double __x ); extern double cotd( double __x ); extern float cotdf( float __x ); extern long double cotdl( long double __x ); extern double acosd( double __x ); extern float acosdf( float __x ); extern long double acosdl( long double __x ); extern double asind( double __x ); extern float asindf( float __x ); extern long double asindl( long double __x ); extern double atand( double __x ); extern float atandf( float __x ); extern long double atandl( long double __x ); extern double atand2( double __y, double __x ); extern float atand2f( float __y, float __x ); extern long double atand2l( long double __y, long double __x ); extern double atan2d( double __y, double __x ); extern float atan2df( float __y, float __x ); extern long double atan2dl( long double __y, long double __x ); extern void sincosd( double __x, double *__psin, double *__pcos ); extern void sincosdf( float __x, float *__psin, float *__pcos ); extern void sincosdl( long double __x, long double *__psin, long double *__pcos ); # 488 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern void sinhcosh( double __x, double *__psinh, double *__pcosh ); extern void sinhcoshf( float __x, float *__psinh, float *__pcosh ); extern void sinhcoshl( long double __x, long double *__psinh, long double *__pcosh ); # 502 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 529 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 543 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 578 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 601 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 620 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 631 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 640 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double invsqrt( double __x ); extern float invsqrtf( float __x ); extern long double invsqrtl( long double __x ); # 659 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double cdfnorminv( double __x ); extern float cdfnorminvf( float __x ); extern double erfinv( double __x ); extern float erfinvf( float __x ); extern long double erfinvl( long double __x ); extern double gamma_r( double __x, int *__signgam ); extern float gammaf_r( float __x, int *__signgam ); extern long double gammal_r( long double __x, int *__signgam ); # 680 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 696 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 714 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 734 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 753 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 768 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 777 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 800 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double annuity( double __x, double __y ); extern double compound( double __x, double __y ); extern float annuityf( float __x, float __y ); extern long double annuityl( long double __x, long double __y ); extern float compoundf( float __x, float __y ); extern long double compoundl( long double __x, long double __y ); # 820 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 831 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 842 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 883 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 904 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1059 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1073 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef struct ____exception { int type; const char *name; double arg1; double arg2; double retval; } ___exception; # 1094 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef struct ____exceptionf { int type; const char *name; float arg1; float arg2; float retval; } ___exceptionf; typedef struct ____exceptionl { int type; const char *name; long double arg1; long double arg2; long double retval; } ___exceptionl; extern int matherrf( struct ____exceptionf *__e ); extern int matherrl( struct ____exceptionl *__e ); # 1126 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef int ( *___pmatherr )( struct ____exception *__e ); typedef int ( *___pmatherrf )( struct ____exceptionf *__e ); typedef int ( *___pmatherrl )( struct ____exceptionl *__e ); extern ___pmatherr __libm_setusermatherr( ___pmatherr __user_matherr ); extern ___pmatherrf __libm_setusermatherrf( ___pmatherrf __user_matherrf ); extern ___pmatherrl __libm_setusermatherrl( ___pmatherrl __user_matherrl ); # 1164 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern _LIB_VERSION_TYPE _LIB_VERSIONIMF; # 1178 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1391 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 25 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 25 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 93 "/usr/include/sys/uio.h" 3 # 120 "/usr/include/sys/uio.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 30 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 113 "/usr/include/bits/socket.h" 3 # 154 "/usr/include/bits/socket.h" 3 # 166 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 209 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 272 "/usr/include/bits/socket.h" 3 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 303 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 328 "/usr/include/bits/socket.h" 3 enum { SCM_RIGHTS = 0x01 }; # 350 "/usr/include/bits/socket.h" 3 # 375 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 25 "/usr/include/asm-generic/socket.h" 3 # 35 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 378 "/usr/include/bits/socket.h" 2 3 # 409 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 100 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 225 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/malloc.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 25 "/usr/include/malloc.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/malloc.h" 2 3 # 1 "/usr/include/stdio.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/stdio.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 79 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 892 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 52 "/usr/include/_G_config.h" 3 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 74 "/usr/include/_G_config.h" 3 # 33 "/usr/include/libio.h" 2 3 # 49 "/usr/include/libio.h" 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 typedef __builtin_va_list __gnuc_va_list; # 128 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/include/libio.h" 2 3 # 73 "/usr/include/libio.h" 3 # 88 "/usr/include/libio.h" 3 # 104 "/usr/include/libio.h" 3 # 113 "/usr/include/libio.h" 3 # 139 "/usr/include/libio.h" 3 # 149 "/usr/include/libio.h" 3 # 168 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 270 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 __off64_t _offset; # 328 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; typedef struct _IO_FILE _IO_FILE; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 358 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); # 410 "/usr/include/libio.h" 3 extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 442 "/usr/include/libio.h" 3 # 456 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_ferror (_IO_FILE *__fp) __attribute__ ((__nothrow__)); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern void _IO_funlockfile (_IO_FILE *) __attribute__ ((__nothrow__)); extern int _IO_ftrylockfile (_IO_FILE *) __attribute__ ((__nothrow__)); # 489 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) __attribute__ ((__nothrow__)); # 546 "/usr/include/libio.h" 3 # 76 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 87 "/usr/include/stdio.h" 3 typedef __off_t off_t; # 101 "/usr/include/stdio.h" 3 typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 162 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) __attribute__ ((__nothrow__)); extern int rename (__const char *__old, __const char *__new) __attribute__ ((__nothrow__)); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) __attribute__ ((__nothrow__)); extern FILE *tmpfile (void) ; # 202 "/usr/include/stdio.h" 3 extern char *tmpnam (char *__s) __attribute__ ((__nothrow__)) ; extern char *tmpnam_r (char *__s) __attribute__ ((__nothrow__)) ; extern char *tempnam (__const char *__dir, __const char *__pfx) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); # 263 "/usr/include/stdio.h" 3 extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 # 302 "/usr/include/stdio.h" 3 extern FILE *fdopen (int __fd, __const char *__modes) __attribute__ ((__nothrow__)) ; # 315 "/usr/include/stdio.h" 3 extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) __attribute__ ((__nothrow__)) ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) __attribute__ ((__nothrow__)) ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) __attribute__ ((__nothrow__)); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) __attribute__ ((__nothrow__)); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) __attribute__ ((__nothrow__)); extern void setlinebuf (FILE *__stream) __attribute__ ((__nothrow__)); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__printf__, 3, 0))); # 408 "/usr/include/stdio.h" 3 extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __attribute__ ((__nothrow__)); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_fscanf") ; extern int scanf (__const char *__restrict __format, ...) __asm__ ("" "__isoc99_scanf") ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) __asm__ ("" "__isoc99_sscanf") __attribute__ ((__nothrow__)); # 466 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vfscanf") __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vscanf") __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __asm__ ("" "__isoc99_vsscanf") __attribute__ ((__nothrow__)) __attribute__ ((__format__ (__scanf__, 2, 0))); # 525 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; # 647 "/usr/include/stdio.h" 3 extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; # 724 "/usr/include/stdio.h" 3 extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 786 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 # 818 "/usr/include/stdio.h" 3 extern void clearerr (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void clearerr_unlocked (FILE *__stream) __attribute__ ((__nothrow__)); extern int feof_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int ferror_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern __const char *__const sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) __attribute__ ((__nothrow__)) ; extern int fileno_unlocked (FILE *__stream) __attribute__ ((__nothrow__)) ; extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 902 "/usr/include/stdio.h" 3 extern void flockfile (FILE *__stream) __attribute__ ((__nothrow__)); extern int ftrylockfile (FILE *__stream) __attribute__ ((__nothrow__)) ; extern void funlockfile (FILE *__stream) __attribute__ ((__nothrow__)); # 925 "/usr/include/stdio.h" 3 # 937 "/usr/include/stdio.h" 3 # 27 "/usr/include/malloc.h" 2 3 # 46 "/usr/include/malloc.h" 3 extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); extern void *memalign (size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void * pvalloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *(*__morecore) (ptrdiff_t __size); extern void *__default_morecore (ptrdiff_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)); struct mallinfo { int arena; int ordblks; int smblks; int hblks; int hblkhd; int usmblks; int fsmblks; int uordblks; int fordblks; int keepcost; }; extern struct mallinfo mallinfo (void) __attribute__ ((__nothrow__)); # 123 "/usr/include/malloc.h" 3 # 133 "/usr/include/malloc.h" 3 extern int mallopt (int __param, int __val) __attribute__ ((__nothrow__)); extern int malloc_trim (size_t __pad) __attribute__ ((__nothrow__)); extern size_t malloc_usable_size (void *__ptr) __attribute__ ((__nothrow__)); extern void malloc_stats (void) __attribute__ ((__nothrow__)); extern int malloc_info (int __options, FILE *__fp); extern void *malloc_get_state (void) __attribute__ ((__nothrow__)); extern int malloc_set_state (void *__ptr) __attribute__ ((__nothrow__)); extern void (*__malloc_initialize_hook) (void); extern void (*__free_hook) (void *__ptr, __const void *); extern void *(*__malloc_hook) (size_t __size, __const void *); extern void *(*__realloc_hook) (void *__ptr, size_t __size, __const void *); extern void *(*__memalign_hook) (size_t __alignment, size_t __size, __const void *); extern void (*__after_morecore_hook) (void); extern void __malloc_check_init (void) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MALLOC_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/time.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 39 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 43 "/usr/include/bits/time.h" 3 # 43 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; struct timespec { __time_t tv_sec; long int tv_nsec; }; struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; typedef __pid_t pid_t; extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 211 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 401 "/usr/include/time.h" 3 # 416 "/usr/include/time.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Direct.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "Ws2tcpip.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 23 "/usr/include/endian.h" 2 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "ieeefp.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/strings.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/strings.h" 2 3 extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)); # 74 "/usr/include/strings.h" 3 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 102 "/usr/include/strings.h" 3 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((const)); extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 126 "/usr/include/strings.h" 2 3 extern int strcasecmp_l (__const char *__s1, __const char *__s2, __locale_t __loc) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (__const char *__s1, __const char *__s2, size_t __n, __locale_t __loc) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 25 "/usr/include/sched.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 typedef __time_t time_t; # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 35 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 39 "/usr/include/bits/sched.h" 3 # 72 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 163 "/usr/include/bits/sched.h" 3 # 182 "/usr/include/bits/sched.h" 3 # 193 "/usr/include/bits/sched.h" 3 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 125 "/usr/include/sched.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "cxxabi.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "dos.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "WindowsX.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/sysinfo.h" 2 3 # 1 "/usr/include/linux/kernel.h" 1 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/signal.h" 1 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 68 "/usr/include/bits/sigset.h" 3 # 100 "/usr/include/bits/sigset.h" 3 extern int __sigismember (__const __sigset_t *, int); extern int __sigaddset (__sigset_t *, int); extern int __sigdelset (__sigset_t *, int); # 124 "/usr/include/bits/sigset.h" 3 # 34 "/usr/include/signal.h" 2 3 typedef __sig_atomic_t sig_atomic_t; typedef __sigset_t sigset_t; # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 58 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/signum.h" 1 3 # 68 "/usr/include/bits/signum.h" 3 # 59 "/usr/include/signal.h" 2 3 typedef __pid_t pid_t; typedef __uid_t uid_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 77 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 typedef union sigval { int sival_int; void *sival_ptr; } sigval_t; # 50 "/usr/include/bits/siginfo.h" 3 typedef struct siginfo { int si_signo; int si_errno; int si_code; union { int _pad[((128 / sizeof (int)) - 4)]; struct { __pid_t si_pid; __uid_t si_uid; } _kill; struct { int si_tid; int si_overrun; sigval_t si_sigval; } _timer; struct { __pid_t si_pid; __uid_t si_uid; sigval_t si_sigval; } _rt; struct { __pid_t si_pid; __uid_t si_uid; int si_status; __clock_t si_utime; __clock_t si_stime; } _sigchld; struct { void *si_addr; } _sigfault; struct { long int si_band; int si_fd; } _sigpoll; } _sifields; } siginfo_t; # 125 "/usr/include/bits/siginfo.h" 3 enum { SI_ASYNCNL = -60, SI_TKILL = -6, SI_SIGIO, SI_ASYNCIO, SI_MESGQ, SI_TIMER, SI_QUEUE, SI_USER, SI_KERNEL = 0x80 }; enum { ILL_ILLOPC = 1, ILL_ILLOPN, ILL_ILLADR, ILL_ILLTRP, ILL_PRVOPC, ILL_PRVREG, ILL_COPROC, ILL_BADSTK }; enum { FPE_INTDIV = 1, FPE_INTOVF, FPE_FLTDIV, FPE_FLTOVF, FPE_FLTUND, FPE_FLTRES, FPE_FLTINV, FPE_FLTSUB }; enum { SEGV_MAPERR = 1, SEGV_ACCERR }; enum { BUS_ADRALN = 1, BUS_ADRERR, BUS_OBJERR }; enum { TRAP_BRKPT = 1, TRAP_TRACE }; enum { CLD_EXITED = 1, CLD_KILLED, CLD_DUMPED, CLD_TRAPPED, CLD_STOPPED, CLD_CONTINUED }; enum { POLL_IN = 1, POLL_OUT, POLL_MSG, POLL_ERR, POLL_PRI, POLL_HUP }; # 272 "/usr/include/bits/siginfo.h" 3 typedef struct sigevent { sigval_t sigev_value; int sigev_signo; int sigev_notify; union { int _pad[((64 / sizeof (int)) - 4)]; __pid_t _tid; struct { void (*_function) (sigval_t); void *_attribute; } _sigev_thread; } _sigev_un; } sigevent_t; enum { SIGEV_SIGNAL = 0, SIGEV_NONE, SIGEV_THREAD, SIGEV_THREAD_ID = 4 }; # 80 "/usr/include/signal.h" 2 3 typedef void (*__sighandler_t) (int); extern __sighandler_t __sysv_signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); extern __sighandler_t signal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); # 113 "/usr/include/signal.h" 3 # 121 "/usr/include/signal.h" 3 extern int kill (__pid_t __pid, int __sig) __attribute__ ((__nothrow__)); extern int killpg (__pid_t __pgrp, int __sig) __attribute__ ((__nothrow__)); extern int raise (int __sig) __attribute__ ((__nothrow__)); extern __sighandler_t ssignal (int __sig, __sighandler_t __handler) __attribute__ ((__nothrow__)); extern int gsignal (int __sig) __attribute__ ((__nothrow__)); extern void psignal (int __sig, __const char *__s); extern void psiginfo (__const siginfo_t *__pinfo, __const char *__s); extern int __sigpause (int __sig_or_mask, int __is_sig); # 184 "/usr/include/signal.h" 3 extern int sigblock (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigsetmask (int __mask) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int siggetmask (void) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); typedef __sighandler_t sig_t; extern int sigemptyset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigfillset (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigaddset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigdelset (sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigismember (__const sigset_t *__set, int __signo) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 249 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/sigaction.h" 1 3 struct sigaction { union { __sighandler_t sa_handler; void (*sa_sigaction) (int, siginfo_t *, void *); } __sigaction_handler; __sigset_t sa_mask; int sa_flags; void (*sa_restorer) (void); }; # 69 "/usr/include/bits/sigaction.h" 3 # 253 "/usr/include/signal.h" 2 3 extern int sigprocmask (int __how, __const sigset_t *__restrict __set, sigset_t *__restrict __oset) __attribute__ ((__nothrow__)); extern int sigsuspend (__const sigset_t *__set) __attribute__ ((__nonnull__ (1))); extern int sigaction (int __sig, __const struct sigaction *__restrict __act, struct sigaction *__restrict __oact) __attribute__ ((__nothrow__)); extern int sigpending (sigset_t *__set) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sigwait (__const sigset_t *__restrict __set, int *__restrict __sig) __attribute__ ((__nonnull__ (1, 2))); extern int sigwaitinfo (__const sigset_t *__restrict __set, siginfo_t *__restrict __info) __attribute__ ((__nonnull__ (1))); extern int sigtimedwait (__const sigset_t *__restrict __set, siginfo_t *__restrict __info, __const struct timespec *__restrict __timeout) __attribute__ ((__nonnull__ (1))); extern int sigqueue (__pid_t __pid, int __sig, __const union sigval __val) __attribute__ ((__nothrow__)); extern __const char *__const _sys_siglist[65]; extern __const char *__const sys_siglist[65]; struct sigvec { __sighandler_t sv_handler; int sv_mask; int sv_flags; }; extern int sigvec (int __sig, __const struct sigvec *__vec, struct sigvec *__ovec) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigcontext.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/sigcontext.h" 2 3 struct _fpreg { unsigned short significand[4]; unsigned short exponent; }; struct _fpxreg { unsigned short significand[4]; unsigned short exponent; unsigned short padding[3]; }; struct _xmmreg { __uint32_t element[4]; }; # 108 "/usr/include/bits/sigcontext.h" 3 struct _fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _fpxreg _st[8]; struct _xmmreg _xmm[16]; __uint32_t padding[24]; }; struct sigcontext { unsigned long r8; unsigned long r9; unsigned long r10; unsigned long r11; unsigned long r12; unsigned long r13; unsigned long r14; unsigned long r15; unsigned long rdi; unsigned long rsi; unsigned long rbp; unsigned long rbx; unsigned long rdx; unsigned long rax; unsigned long rcx; unsigned long rsp; unsigned long rip; unsigned long eflags; unsigned short cs; unsigned short gs; unsigned short fs; unsigned short __pad0; unsigned long err; unsigned long trapno; unsigned long oldmask; unsigned long cr2; struct _fpstate * fpstate; unsigned long __reserved1 [8]; }; # 340 "/usr/include/signal.h" 2 3 extern int sigreturn (struct sigcontext *__scp) __attribute__ ((__nothrow__)); # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 350 "/usr/include/signal.h" 2 3 extern int siginterrupt (int __sig, int __interrupt) __attribute__ ((__nothrow__)); # 1 "/usr/include/bits/sigstack.h" 1 3 struct sigstack { void *ss_sp; int ss_onstack; }; enum { SS_ONSTACK = 1, SS_DISABLE }; typedef struct sigaltstack { void *ss_sp; int ss_flags; size_t ss_size; } stack_t; # 357 "/usr/include/signal.h" 2 3 # 1 "/usr/include/sys/ucontext.h" 1 3 # 1 "/usr/include/signal.h" 1 3 # 24 "/usr/include/sys/ucontext.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 25 "/usr/include/sys/ucontext.h" 2 3 typedef long int greg_t; typedef greg_t gregset_t[23]; # 93 "/usr/include/sys/ucontext.h" 3 struct _libc_fpxreg { unsigned short int significand[4]; unsigned short int exponent; unsigned short int padding[3]; }; struct _libc_xmmreg { __uint32_t element[4]; }; struct _libc_fpstate { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; struct _libc_fpxreg _st[8]; struct _libc_xmmreg _xmm[16]; __uint32_t padding[24]; }; typedef struct _libc_fpstate *fpregset_t; typedef struct { gregset_t gregs; fpregset_t fpregs; unsigned long __reserved1 [8]; } mcontext_t; typedef struct ucontext { unsigned long int uc_flags; struct ucontext *uc_link; stack_t uc_stack; mcontext_t uc_mcontext; __sigset_t uc_sigmask; struct _libc_fpstate __fpregs_mem; } ucontext_t; # 247 "/usr/include/sys/ucontext.h" 3 # 360 "/usr/include/signal.h" 2 3 extern int sigstack (struct sigstack *__ss, struct sigstack *__oss) __attribute__ ((__nothrow__)) __attribute__ ((__deprecated__)); extern int sigaltstack (__const struct sigaltstack *__restrict __ss, struct sigaltstack *__restrict __oss) __attribute__ ((__nothrow__)); # 390 "/usr/include/signal.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 395 "/usr/include/signal.h" 2 3 # 1 "/usr/include/bits/sigthread.h" 1 3 extern int pthread_sigmask (int __how, __const __sigset_t *__restrict __newmask, __sigset_t *__restrict __oldmask)__attribute__ ((__nothrow__)); extern int pthread_kill (pthread_t __threadid, int __signo) __attribute__ ((__nothrow__)); # 396 "/usr/include/signal.h" 2 3 extern int __libc_current_sigrtmin (void) __attribute__ ((__nothrow__)); extern int __libc_current_sigrtmax (void) __attribute__ ((__nothrow__)); # 32 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/sys/resource.h" 1 3 # 1 "/usr/include/bits/resource.h" 1 3 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; typedef __rlim_t rlim_t; # 134 "/usr/include/bits/resource.h" 3 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 152 "/usr/include/bits/resource.h" 3 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 }; # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 typedef __id_t id_t; typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 65 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 85 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 33 "/usr/include/sys/wait.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 39 "/usr/include/sys/wait.h" 2 3 # 52 "/usr/include/sys/wait.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 78 "/usr/include/sys/wait.h" 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 81 "/usr/include/sys/wait.h" 2 3 # 92 "/usr/include/sys/wait.h" 3 # 99 "/usr/include/sys/wait.h" 3 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; extern __pid_t wait (__WAIT_STATUS __stat_loc); extern __pid_t waitpid (__pid_t __pid, int *__stat_loc, int __options); # 1 "/usr/include/bits/siginfo.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 26 "/usr/include/bits/siginfo.h" 2 3 # 39 "/usr/include/bits/siginfo.h" 3 # 259 "/usr/include/bits/siginfo.h" 3 # 144 "/usr/include/sys/wait.h" 2 3 extern int waitid (idtype_t __idtype, __id_t __id, siginfo_t *__infop, int __options); struct rusage; extern __pid_t wait3 (__WAIT_STATUS __stat_loc, int __options, struct rusage * __usage) __attribute__ ((__nothrow__)); extern __pid_t wait4 (__pid_t __pid, __WAIT_STATUS __stat_loc, int __options, struct rusage *__usage) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 typedef union { union wait *__uptr; int *__iptr; } __WAIT_STATUS __attribute__ ((__transparent_union__)); # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) __attribute__ ((__nothrow__)) ; extern double atof (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 274 "/usr/include/stdlib.h" 3 # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) __attribute__ ((__nothrow__)) ; extern long int a64l (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) __attribute__ ((__nothrow__)); extern void srandom (unsigned int __seed) __attribute__ ((__nothrow__)); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) __attribute__ ((__nothrow__)); extern void srand (unsigned int __seed) __attribute__ ((__nothrow__)); extern int rand_r (unsigned int *__seed) __attribute__ ((__nothrow__)); extern double drand48 (void) __attribute__ ((__nothrow__)); extern double erand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) __attribute__ ((__nothrow__)); extern long int nrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) __attribute__ ((__nothrow__)); extern long int jrand48 (unsigned short int __xsubi[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) __attribute__ ((__nothrow__)); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) __attribute__ ((__nothrow__)); extern void cfree (void *__ptr) __attribute__ ((__nothrow__)); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern void *alloca (size_t __size) __attribute__ ((__nothrow__)); # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern void abort (void) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 531 "/usr/include/stdlib.h" 3 extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 554 "/usr/include/stdlib.h" 3 extern void _Exit (int __status) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int clearenv (void) __attribute__ ((__nothrow__)); extern char *mktemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 633 "/usr/include/stdlib.h" 3 extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 656 "/usr/include/stdlib.h" 3 extern char *mkdtemp (char *__template) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 710 "/usr/include/stdlib.h" 3 extern int system (__const char *__command) ; # 727 "/usr/include/stdlib.h" 3 extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) __attribute__ ((__nothrow__)) ; typedef int (*__compar_fn_t) (__const void *, __const void *); # 751 "/usr/include/stdlib.h" 3 extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern long int labs (long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) __attribute__ ((__nothrow__)) __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) __attribute__ ((__nothrow__)) ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)) ; extern int wctomb (char *__s, wchar_t __wchar) __attribute__ ((__nothrow__)) ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) __attribute__ ((__nothrow__)); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) __attribute__ ((__nothrow__)); extern int rpmatch (__const char *__response) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))) ; # 932 "/usr/include/stdlib.h" 3 # 943 "/usr/include/stdlib.h" 3 extern int getloadavg (double __loadavg[], int __nelem) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 25 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/sched.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 typedef __time_t time_t; # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 35 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 39 "/usr/include/bits/sched.h" 3 # 72 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) __attribute__ ((__nothrow__)); extern int unshare (int __flags) __attribute__ ((__nothrow__)); extern int sched_getcpu (void) __attribute__ ((__nothrow__)); struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 163 "/usr/include/bits/sched.h" 3 # 182 "/usr/include/bits/sched.h" 3 # 193 "/usr/include/bits/sched.h" 3 extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) __attribute__ ((__nothrow__)); extern cpu_set_t *__sched_cpualloc (size_t __count) __attribute__ ((__nothrow__)) ; extern void __sched_cpufree (cpu_set_t *__set) __attribute__ ((__nothrow__)); # 44 "/usr/include/sched.h" 2 3 extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)); extern int sched_getscheduler (__pid_t __pid) __attribute__ ((__nothrow__)); extern int sched_yield (void) __attribute__ ((__nothrow__)); extern int sched_get_priority_max (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_get_priority_min (int __algorithm) __attribute__ ((__nothrow__)); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) __attribute__ ((__nothrow__)); # 125 "/usr/include/sched.h" 3 # 26 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 39 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 43 "/usr/include/bits/time.h" 3 # 43 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 178 "/usr/include/time.h" 3 extern clock_t clock (void) __attribute__ ((__nothrow__)); extern time_t time (time_t *__timer) __attribute__ ((__nothrow__)); extern double difftime (time_t __time1, time_t __time0) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) __attribute__ ((__nothrow__)); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) __attribute__ ((__nothrow__)); # 211 "/usr/include/time.h" 3 # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) __attribute__ ((__nothrow__)); extern struct tm *gmtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *localtime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) __attribute__ ((__nothrow__)); extern char *asctime (__const struct tm *__tp) __attribute__ ((__nothrow__)); extern char *ctime (__const time_t *__timer) __attribute__ ((__nothrow__)); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) __attribute__ ((__nothrow__)); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) __attribute__ ((__nothrow__)); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) __attribute__ ((__nothrow__)); extern time_t timegm (struct tm *__tp) __attribute__ ((__nothrow__)); extern time_t timelocal (struct tm *__tp) __attribute__ ((__nothrow__)); extern int dysize (int __year) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) __attribute__ ((__nothrow__)); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) __attribute__ ((__nothrow__)); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) __attribute__ ((__nothrow__)); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) __attribute__ ((__nothrow__)); extern int timer_delete (timer_t __timerid) __attribute__ ((__nothrow__)); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) __attribute__ ((__nothrow__)); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) __attribute__ ((__nothrow__)); extern int timer_getoverrun (timer_t __timerid) __attribute__ ((__nothrow__)); # 401 "/usr/include/time.h" 3 # 416 "/usr/include/time.h" 3 # 27 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 31 "/usr/include/pthread.h" 2 3 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; # 85 "/usr/include/pthread.h" 3 # 111 "/usr/include/pthread.h" 3 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 144 "/usr/include/pthread.h" 3 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); # 258 "/usr/include/pthread.h" 3 extern int pthread_detach (pthread_t __th) __attribute__ ((__nothrow__)); extern pthread_t pthread_self (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) __attribute__ ((__nothrow__)); extern int pthread_attr_init (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 407 "/usr/include/pthread.h" 3 extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) __attribute__ ((__nothrow__)); # 438 "/usr/include/pthread.h" 3 # 447 "/usr/include/pthread.h" 3 # 467 "/usr/include/pthread.h" 3 extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; # 641 "/usr/include/pthread.h" 3 # 664 "/usr/include/pthread.h" 3 extern void __pthread_register_cancel (__pthread_unwind_buf_t *__buf) ; # 676 "/usr/include/pthread.h" 3 extern void __pthread_unregister_cancel (__pthread_unwind_buf_t *__buf) ; # 715 "/usr/include/pthread.h" 3 extern void __pthread_unwind_next (__pthread_unwind_buf_t *__buf) __attribute__ ((__noreturn__)) __attribute__ ((__weak__)) ; struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) __attribute__ ((__nothrow__)); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 865 "/usr/include/pthread.h" 3 extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) __attribute__ ((__nothrow__)); extern void *pthread_getspecific (pthread_key_t __key) __attribute__ ((__nothrow__)); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) __attribute__ ((__nothrow__)) ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) __attribute__ ((__nothrow__)); # 1142 "/usr/include/pthread.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/setjmp.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 31 "/usr/include/setjmp.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 32 "/usr/include/setjmp.h" 2 3 struct __jmp_buf_tag { __jmp_buf __jmpbuf; int __mask_was_saved; __sigset_t __saved_mask; }; typedef struct __jmp_buf_tag jmp_buf[1]; extern int setjmp (jmp_buf __env) __attribute__ ((__nothrow__)); extern int __sigsetjmp (struct __jmp_buf_tag __env[1], int __savemask) __attribute__ ((__nothrow__)); extern int _setjmp (struct __jmp_buf_tag __env[1]) __attribute__ ((__nothrow__)); # 76 "/usr/include/setjmp.h" 3 extern void longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); extern void _longjmp (struct __jmp_buf_tag __env[1], int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); typedef struct __jmp_buf_tag sigjmp_buf[1]; extern void siglongjmp (sigjmp_buf __env, int __val) __attribute__ ((__nothrow__)) __attribute__ ((__noreturn__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/utsname.h" 2 3 # 1 "/usr/include/bits/utsname.h" 1 3 # 31 "/usr/include/sys/utsname.h" 2 3 # 47 "/usr/include/sys/utsname.h" 3 struct utsname { char sysname[65]; char nodename[65]; char release[65]; char version[65]; char machine[65]; char __domainname[65]; }; extern int uname (struct utsname *__name) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "machine/endian.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 120 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/limits.h" 2 3 # 115 "/usr/include/limits.h" 3 # 142 "/usr/include/limits.h" 3 # 1 "/usr/include/bits/posix1_lim.h" 1 3 # 151 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 37 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 17 "/usr/include/linux/limits.h" 3 # 40 "/usr/include/bits/local_lim.h" 2 3 # 158 "/usr/include/bits/posix1_lim.h" 2 3 # 146 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 87 "/usr/include/bits/posix2_lim.h" 3 # 150 "/usr/include/limits.h" 2 3 # 123 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 116 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 2 3 # 12 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 38 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 55 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 69 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 102 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 114 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 16 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 34 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 77 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 112 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/fcntl.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 26 "/usr/include/bits/fcntl.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/fcntl.h" 2 3 # 48 "/usr/include/bits/fcntl.h" 3 # 58 "/usr/include/bits/fcntl.h" 3 # 74 "/usr/include/bits/fcntl.h" 3 # 85 "/usr/include/bits/fcntl.h" 3 # 103 "/usr/include/bits/fcntl.h" 3 # 115 "/usr/include/bits/fcntl.h" 3 # 125 "/usr/include/bits/fcntl.h" 3 # 146 "/usr/include/bits/fcntl.h" 3 # 153 "/usr/include/bits/fcntl.h" 3 # 164 "/usr/include/bits/fcntl.h" 3 struct flock { short int l_type; short int l_whence; __off_t l_start; __off_t l_len; __pid_t l_pid; }; # 189 "/usr/include/bits/fcntl.h" 3 # 207 "/usr/include/bits/fcntl.h" 3 # 217 "/usr/include/bits/fcntl.h" 3 # 227 "/usr/include/bits/fcntl.h" 3 # 249 "/usr/include/bits/fcntl.h" 3 # 294 "/usr/include/bits/fcntl.h" 3 # 35 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 41 "/usr/include/fcntl.h" 2 3 # 1 "/usr/include/bits/stat.h" 1 3 # 39 "/usr/include/bits/stat.h" 3 struct stat { __dev_t st_dev; __ino_t st_ino; # 61 "/usr/include/bits/stat.h" 3 __nlink_t st_nlink; __mode_t st_mode; __uid_t st_uid; __gid_t st_gid; int __pad0; __dev_t st_rdev; __off_t st_size; __blksize_t st_blksize; __blkcnt_t st_blocks; struct timespec st_atim; struct timespec st_mtim; struct timespec st_ctim; # 106 "/usr/include/bits/stat.h" 3 long int __unused[3]; # 115 "/usr/include/bits/stat.h" 3 }; # 173 "/usr/include/bits/stat.h" 3 # 192 "/usr/include/bits/stat.h" 3 # 207 "/usr/include/bits/stat.h" 3 # 42 "/usr/include/fcntl.h" 2 3 # 57 "/usr/include/fcntl.h" 3 # 97 "/usr/include/fcntl.h" 3 # 116 "/usr/include/fcntl.h" 3 extern int fcntl (int __fd, int __cmd, ...); extern int open (__const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (1))); # 143 "/usr/include/fcntl.h" 3 extern int openat (int __fd, __const char *__file, int __oflag, ...) __attribute__ ((__nonnull__ (2))); # 170 "/usr/include/fcntl.h" 3 extern int creat (__const char *__file, __mode_t __mode) __attribute__ ((__nonnull__ (1))); # 189 "/usr/include/fcntl.h" 3 extern int lockf (int __fd, int __cmd, __off_t __len); # 218 "/usr/include/fcntl.h" 3 extern int posix_fadvise (int __fd, __off_t __offset, __off_t __len, int __advise) __attribute__ ((__nothrow__)); # 238 "/usr/include/fcntl.h" 3 extern int posix_fallocate (int __fd, __off_t __offset, __off_t __len); # 259 "/usr/include/fcntl.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/string.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/string.h" 2 3 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 95 "/usr/include/string.h" 3 extern void *memchr (__const void *__s, int __c, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 124 "/usr/include/string.h" 3 extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 163 "/usr/include/string.h" 2 3 extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 209 "/usr/include/string.h" 3 # 235 "/usr/include/string.h" 3 extern char *strchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 262 "/usr/include/string.h" 3 extern char *strrchr (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 280 "/usr/include/string.h" 3 extern size_t strcspn (__const char *__s, __const char *__reject) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 314 "/usr/include/string.h" 3 extern char *strpbrk (__const char *__s, __const char *__accept) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 342 "/usr/include/string.h" 3 extern char *strstr (__const char *__haystack, __const char *__needle) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strtok (char *__restrict __s, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))); # 377 "/usr/include/string.h" 3 # 395 "/usr/include/string.h" 3 extern size_t strlen (__const char *__s) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) __attribute__ ((__nothrow__)); extern int strerror_r (int __errnum, char *__buf, size_t __buflen) __asm__ ("" "__xpg_strerror_r") __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 442 "/usr/include/string.h" 3 extern char *strerror_l (int __errnum, __locale_t __l) __attribute__ ((__nothrow__)); extern void __bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 489 "/usr/include/string.h" 3 extern char *index (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); # 517 "/usr/include/string.h" 3 extern char *rindex (__const char *__s, int __c) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern int ffs (int __i) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 534 "/usr/include/string.h" 3 extern int strcasecmp (__const char *__s1, __const char *__s2) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); # 555 "/usr/include/string.h" 3 extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) __attribute__ ((__nothrow__)); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 610 "/usr/include/string.h" 3 # 639 "/usr/include/string.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/times.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 57 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 30 "/usr/include/sys/times.h" 2 3 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; extern clock_t times (struct tms *__buffer) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "io.h" #include ^: ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 156 "/usr/include/stdint.h" 3 # 205 "/usr/include/stdint.h" 3 # 215 "/usr/include/stdint.h" 3 # 226 "/usr/include/stdint.h" 3 # 238 "/usr/include/stdint.h" 3 # 259 "/usr/include/stdint.h" 3 # 298 "/usr/include/stdint.h" 3 # 308 "/usr/include/stdint.h" 3 # 317 "/usr/include/stdint.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/pwd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/pwd.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/pwd.h" 2 3 typedef __gid_t gid_t; typedef __uid_t uid_t; struct passwd { char *pw_name; char *pw_passwd; __uid_t pw_uid; __gid_t pw_gid; char *pw_gecos; char *pw_dir; char *pw_shell; }; # 1 "/usr/include/stdio.h" 1 3 # 40 "/usr/include/stdio.h" 3 struct _IO_FILE; typedef struct _IO_FILE FILE; # 70 "/usr/include/stdio.h" 3 # 941 "/usr/include/stdio.h" 3 # 65 "/usr/include/pwd.h" 2 3 extern void setpwent (void); extern void endpwent (void); extern struct passwd *getpwent (void); extern struct passwd *fgetpwent (FILE *__stream); extern int putpwent (__const struct passwd *__restrict __p, FILE *__restrict __f); extern struct passwd *getpwuid (__uid_t __uid); extern struct passwd *getpwnam (__const char *__name); extern int getpwent_r (struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwuid_r (__uid_t __uid, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int getpwnam_r (__const char *__restrict __name, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); extern int fgetpwent_r (FILE *__restrict __stream, struct passwd *__restrict __resultbuf, char *__restrict __buffer, size_t __buflen, struct passwd **__restrict __result); # 183 "/usr/include/pwd.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 1 3 # 45 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 extern int fegetround (void) ; # 82 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 93 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 105 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 115 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 126 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 136 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 147 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 155 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 177 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 191 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 265 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/float.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 120 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 28 "/usr/include/limits.h" 2 3 # 115 "/usr/include/limits.h" 3 # 142 "/usr/include/limits.h" 3 # 1 "/usr/include/bits/posix1_lim.h" 1 3 # 151 "/usr/include/bits/posix1_lim.h" 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 37 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 17 "/usr/include/linux/limits.h" 3 # 40 "/usr/include/bits/local_lim.h" 2 3 # 158 "/usr/include/bits/posix1_lim.h" 2 3 # 146 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 87 "/usr/include/bits/posix2_lim.h" 3 # 150 "/usr/include/limits.h" 2 3 # 123 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 116 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 2 3 # 12 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 38 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 55 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 69 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 102 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 114 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 16 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 34 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 77 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 112 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 27 "/usr/include/sys/param.h" 2 3 # 1 "/usr/include/linux/param.h" 1 3 # 1 "/usr/include/asm/param.h" 1 3 # 1 "/usr/include/asm-generic/param.h" 1 3 # 2 "/usr/include/asm/param.h" 2 3 # 5 "/usr/include/linux/param.h" 2 3 # 29 "/usr/include/sys/param.h" 2 3 # 45 "/usr/include/sys/param.h" 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 53 "/usr/include/sys/param.h" 2 3 # 72 "/usr/include/sys/param.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 156 "/usr/include/stdint.h" 3 # 205 "/usr/include/stdint.h" 3 # 215 "/usr/include/stdint.h" 3 # 226 "/usr/include/stdint.h" 3 # 238 "/usr/include/stdint.h" 3 # 259 "/usr/include/stdint.h" 3 # 298 "/usr/include/stdint.h" 3 # 308 "/usr/include/stdint.h" 3 # 317 "/usr/include/stdint.h" 3 # 25 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 # 200 "/usr/include/sys/types.h" 3 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 25 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 93 "/usr/include/sys/uio.h" 3 # 120 "/usr/include/sys/uio.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 30 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 113 "/usr/include/bits/socket.h" 3 # 154 "/usr/include/bits/socket.h" 3 # 166 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 209 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 272 "/usr/include/bits/socket.h" 3 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 303 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 328 "/usr/include/bits/socket.h" 3 enum { SCM_RIGHTS = 0x01 }; # 350 "/usr/include/bits/socket.h" 3 # 375 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 25 "/usr/include/asm-generic/socket.h" 3 # 35 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 378 "/usr/include/bits/socket.h" 2 3 # 409 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 100 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 225 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 26 "/usr/include/netinet/in.h" 2 3 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 1 "/usr/include/bits/in.h" 1 3 # 54 "/usr/include/bits/in.h" 3 # 74 "/usr/include/bits/in.h" 3 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 133 "/usr/include/bits/in.h" 3 # 153 "/usr/include/bits/in.h" 3 # 165 "/usr/include/bits/in.h" 3 # 357 "/usr/include/netinet/in.h" 2 3 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 377 "/usr/include/netinet/in.h" 2 3 # 398 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 564 "/usr/include/netinet/in.h" 3 # 29 "/usr/include/netdb.h" 2 3 # 1 "/usr/include/rpc/netdb.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 43 "/usr/include/rpc/netdb.h" 2 3 struct rpcent { char *r_name; char **r_aliases; int r_number; }; extern void setrpcent (int __stayopen) __attribute__ ((__nothrow__)); extern void endrpcent (void) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbyname (__const char *__name) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcbynumber (int __number) __attribute__ ((__nothrow__)); extern struct rpcent *getrpcent (void) __attribute__ ((__nothrow__)); extern int getrpcbyname_r (__const char *__name, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcbynumber_r (int __number, struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); extern int getrpcent_r (struct rpcent *__result_buf, char *__buffer, size_t __buflen, struct rpcent **__result) __attribute__ ((__nothrow__)); # 34 "/usr/include/netdb.h" 2 3 # 42 "/usr/include/netdb.h" 3 # 1 "/usr/include/bits/netdb.h" 1 3 struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; # 44 "/usr/include/netdb.h" 2 3 # 52 "/usr/include/netdb.h" 3 extern int *__h_errno_location (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 79 "/usr/include/netdb.h" 3 extern void herror (__const char *__str) __attribute__ ((__nothrow__)); extern __const char *hstrerror (int __err_num) __attribute__ ((__nothrow__)); struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; extern void sethostent (int __stay_open); extern void endhostent (void); extern struct hostent *gethostent (void); extern struct hostent *gethostbyaddr (__const void *__addr, __socklen_t __len, int __type); extern struct hostent *gethostbyname (__const char *__name); extern struct hostent *gethostbyname2 (__const char *__name, int __af); extern int gethostent_r (struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyaddr_r (__const void *__restrict __addr, __socklen_t __len, int __type, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname_r (__const char *__restrict __name, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern int gethostbyname2_r (__const char *__restrict __name, int __af, struct hostent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct hostent **__restrict __result, int *__restrict __h_errnop); extern void setnetent (int __stay_open); extern void endnetent (void); extern struct netent *getnetent (void); extern struct netent *getnetbyaddr (uint32_t __net, int __type); extern struct netent *getnetbyname (__const char *__name); extern int getnetent_r (struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyaddr_r (uint32_t __net, int __type, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); extern int getnetbyname_r (__const char *__restrict __name, struct netent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct netent **__restrict __result, int *__restrict __h_errnop); struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; extern void setservent (int __stay_open); extern void endservent (void); extern struct servent *getservent (void); extern struct servent *getservbyname (__const char *__name, __const char *__proto); extern struct servent *getservbyport (int __port, __const char *__proto); extern int getservent_r (struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyname_r (__const char *__restrict __name, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); extern int getservbyport_r (int __port, __const char *__restrict __proto, struct servent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct servent **__restrict __result); struct protoent { char *p_name; char **p_aliases; int p_proto; }; extern void setprotoent (int __stay_open); extern void endprotoent (void); extern struct protoent *getprotoent (void); extern struct protoent *getprotobyname (__const char *__name); extern struct protoent *getprotobynumber (int __proto); extern int getprotoent_r (struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobyname_r (__const char *__restrict __name, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int getprotobynumber_r (int __proto, struct protoent *__restrict __result_buf, char *__restrict __buf, size_t __buflen, struct protoent **__restrict __result); extern int setnetgrent (__const char *__netgroup); extern void endnetgrent (void); extern int getnetgrent (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp); extern int innetgr (__const char *__netgroup, __const char *__host, __const char *__user, __const char *__domain); extern int getnetgrent_r (char **__restrict __hostp, char **__restrict __userp, char **__restrict __domainp, char *__restrict __buffer, size_t __buflen); extern int rcmd (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p); extern int rcmd_af (char **__restrict __ahost, unsigned short int __rport, __const char *__restrict __locuser, __const char *__restrict __remuser, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); extern int rexec (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p); extern int rexec_af (char **__restrict __ahost, int __rport, __const char *__restrict __name, __const char *__restrict __pass, __const char *__restrict __cmd, int *__restrict __fd2p, sa_family_t __af); extern int ruserok (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser); extern int ruserok_af (__const char *__rhost, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); extern int iruserok (uint32_t __raddr, int __suser, __const char *__remuser, __const char *__locuser); extern int iruserok_af (__const void *__raddr, int __suser, __const char *__remuser, __const char *__locuser, sa_family_t __af); extern int rresvport (int *__alport); extern int rresvport_af (int *__alport, sa_family_t __af); struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; struct sockaddr *ai_addr; char *ai_canonname; struct addrinfo *ai_next; }; # 598 "/usr/include/netdb.h" 3 # 618 "/usr/include/netdb.h" 3 # 640 "/usr/include/netdb.h" 3 # 658 "/usr/include/netdb.h" 3 extern int getaddrinfo (__const char *__restrict __name, __const char *__restrict __service, __const struct addrinfo *__restrict __req, struct addrinfo **__restrict __pai); extern void freeaddrinfo (struct addrinfo *__ai) __attribute__ ((__nothrow__)); extern __const char *gai_strerror (int __ecode) __attribute__ ((__nothrow__)); extern int getnameinfo (__const struct sockaddr *__restrict __sa, socklen_t __salen, char *__restrict __host, socklen_t __hostlen, char *__restrict __serv, socklen_t __servlen, unsigned int __flags); # 714 "/usr/include/netdb.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/search.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 27 "/usr/include/search.h" 2 3 # 42 "/usr/include/search.h" 3 extern void insque (void *__elem, void *__prev) __attribute__ ((__nothrow__)); extern void remque (void *__elem) __attribute__ ((__nothrow__)); typedef int (*__compar_fn_t) (__const void *, __const void *); typedef enum { FIND, ENTER } ACTION; typedef struct entry { char *key; void *data; } ENTRY; struct _ENTRY; extern ENTRY *hsearch (ENTRY __item, ACTION __action) __attribute__ ((__nothrow__)); extern int hcreate (size_t __nel) __attribute__ ((__nothrow__)); extern void hdestroy (void) __attribute__ ((__nothrow__)); # 112 "/usr/include/search.h" 3 typedef enum { preorder, postorder, endorder, leaf } VISIT; extern void *tsearch (__const void *__key, void **__rootp, __compar_fn_t __compar); extern void *tfind (__const void *__key, void *__const *__rootp, __compar_fn_t __compar); extern void *tdelete (__const void *__restrict __key, void **__restrict __rootp, __compar_fn_t __compar); typedef void (*__action_fn_t) (__const void *__nodep, VISIT __value, int __level); extern void twalk (__const void *__root, __action_fn_t __action); # 161 "/usr/include/search.h" 3 extern void *lfind (__const void *__key, __const void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); extern void *lsearch (__const void *__key, void *__base, size_t *__nmemb, size_t __size, __compar_fn_t __compar); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 1 3 # 43 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 1 3 # 1 "/usr/include/math.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_val.h" 1 3 # 35 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_valf.h" 1 3 # 37 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/huge_vall.h" 1 3 # 38 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/inf.h" 1 3 # 41 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/nan.h" 1 3 # 44 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathdef.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/bits/mathdef.h" 2 3 typedef float float_t; typedef double double_t; # 43 "/usr/include/bits/mathdef.h" 3 # 48 "/usr/include/math.h" 2 3 # 66 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern double acos (double __x) __attribute__ ((__nothrow__)); extern double __acos (double __x) __attribute__ ((__nothrow__)); extern double asin (double __x) __attribute__ ((__nothrow__)); extern double __asin (double __x) __attribute__ ((__nothrow__)); extern double atan (double __x) __attribute__ ((__nothrow__)); extern double __atan (double __x) __attribute__ ((__nothrow__)); extern double atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double __atan2 (double __y, double __x) __attribute__ ((__nothrow__)); extern double cos (double __x) __attribute__ ((__nothrow__)); extern double __cos (double __x) __attribute__ ((__nothrow__)); extern double sin (double __x) __attribute__ ((__nothrow__)); extern double __sin (double __x) __attribute__ ((__nothrow__)); extern double tan (double __x) __attribute__ ((__nothrow__)); extern double __tan (double __x) __attribute__ ((__nothrow__)); extern double cosh (double __x) __attribute__ ((__nothrow__)); extern double __cosh (double __x) __attribute__ ((__nothrow__)); extern double sinh (double __x) __attribute__ ((__nothrow__)); extern double __sinh (double __x) __attribute__ ((__nothrow__)); extern double tanh (double __x) __attribute__ ((__nothrow__)); extern double __tanh (double __x) __attribute__ ((__nothrow__)); extern double acosh (double __x) __attribute__ ((__nothrow__)); extern double __acosh (double __x) __attribute__ ((__nothrow__)); extern double asinh (double __x) __attribute__ ((__nothrow__)); extern double __asinh (double __x) __attribute__ ((__nothrow__)); extern double atanh (double __x) __attribute__ ((__nothrow__)); extern double __atanh (double __x) __attribute__ ((__nothrow__)); extern double exp (double __x) __attribute__ ((__nothrow__)); extern double __exp (double __x) __attribute__ ((__nothrow__)); extern double frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double __frexp (double __x, int *__exponent) __attribute__ ((__nothrow__)); extern double ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double __ldexp (double __x, int __exponent) __attribute__ ((__nothrow__)); extern double log (double __x) __attribute__ ((__nothrow__)); extern double __log (double __x) __attribute__ ((__nothrow__)); extern double log10 (double __x) __attribute__ ((__nothrow__)); extern double __log10 (double __x) __attribute__ ((__nothrow__)); extern double modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); extern double __modf (double __x, double *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern double expm1 (double __x) __attribute__ ((__nothrow__)); extern double __expm1 (double __x) __attribute__ ((__nothrow__)); extern double log1p (double __x) __attribute__ ((__nothrow__)); extern double __log1p (double __x) __attribute__ ((__nothrow__)); extern double logb (double __x) __attribute__ ((__nothrow__)); extern double __logb (double __x) __attribute__ ((__nothrow__)); extern double exp2 (double __x) __attribute__ ((__nothrow__)); extern double __exp2 (double __x) __attribute__ ((__nothrow__)); extern double log2 (double __x) __attribute__ ((__nothrow__)); extern double __log2 (double __x) __attribute__ ((__nothrow__)); extern double pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double __pow (double __x, double __y) __attribute__ ((__nothrow__)); extern double sqrt (double __x) __attribute__ ((__nothrow__)); extern double __sqrt (double __x) __attribute__ ((__nothrow__)); extern double hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double __hypot (double __x, double __y) __attribute__ ((__nothrow__)); extern double cbrt (double __x) __attribute__ ((__nothrow__)); extern double __cbrt (double __x) __attribute__ ((__nothrow__)); extern double ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __ceil (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __fabs (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __floor (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmod (double __x, double __y) __attribute__ ((__nothrow__)); extern int __isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinf (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finite (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double __drem (double __x, double __y) __attribute__ ((__nothrow__)); extern double significand (double __x) __attribute__ ((__nothrow__)); extern double __significand (double __x) __attribute__ ((__nothrow__)); extern double copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __copysign (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nan (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnan (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double j0 (double) __attribute__ ((__nothrow__)); extern double __j0 (double) __attribute__ ((__nothrow__)); extern double j1 (double) __attribute__ ((__nothrow__)); extern double __j1 (double) __attribute__ ((__nothrow__)); extern double jn (int, double) __attribute__ ((__nothrow__)); extern double __jn (int, double) __attribute__ ((__nothrow__)); extern double y0 (double) __attribute__ ((__nothrow__)); extern double __y0 (double) __attribute__ ((__nothrow__)); extern double y1 (double) __attribute__ ((__nothrow__)); extern double __y1 (double) __attribute__ ((__nothrow__)); extern double yn (int, double) __attribute__ ((__nothrow__)); extern double __yn (int, double) __attribute__ ((__nothrow__)); extern double erf (double) __attribute__ ((__nothrow__)); extern double __erf (double) __attribute__ ((__nothrow__)); extern double erfc (double) __attribute__ ((__nothrow__)); extern double __erfc (double) __attribute__ ((__nothrow__)); extern double lgamma (double) __attribute__ ((__nothrow__)); extern double __lgamma (double) __attribute__ ((__nothrow__)); extern double tgamma (double) __attribute__ ((__nothrow__)); extern double __tgamma (double) __attribute__ ((__nothrow__)); extern double gamma (double) __attribute__ ((__nothrow__)); extern double __gamma (double) __attribute__ ((__nothrow__)); extern double lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double __lgamma_r (double, int *__signgamp) __attribute__ ((__nothrow__)); extern double rint (double __x) __attribute__ ((__nothrow__)); extern double __rint (double __x) __attribute__ ((__nothrow__)); extern double nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nextafter (double __x, double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __nexttoward (double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double __remainder (double __x, double __y) __attribute__ ((__nothrow__)); extern double scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern double __scalbn (double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogb (double __x) __attribute__ ((__nothrow__)); extern int __ilogb (double __x) __attribute__ ((__nothrow__)); extern double scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double __scalbln (double __x, long int __n) __attribute__ ((__nothrow__)); extern double nearbyint (double __x) __attribute__ ((__nothrow__)); extern double __nearbyint (double __x) __attribute__ ((__nothrow__)); extern double round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __round (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double __trunc (double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern double __remquo (double __x, double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrint (double __x) __attribute__ ((__nothrow__)); extern long int __lrint (double __x) __attribute__ ((__nothrow__)); extern long long int llrint (double __x) __attribute__ ((__nothrow__)); extern long long int __llrint (double __x) __attribute__ ((__nothrow__)); extern long int lround (double __x) __attribute__ ((__nothrow__)); extern long int __lround (double __x) __attribute__ ((__nothrow__)); extern long long int llround (double __x) __attribute__ ((__nothrow__)); extern long long int __llround (double __x) __attribute__ ((__nothrow__)); extern double fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fdim (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmax (double __x, double __y) __attribute__ ((__nothrow__)); extern double fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern double __fmin (double __x, double __y) __attribute__ ((__nothrow__)); extern int __fpclassify (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbit (double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern double fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double __fma (double __x, double __y, double __z) __attribute__ ((__nothrow__)); extern double scalb (double __x, double __n) __attribute__ ((__nothrow__)); extern double __scalb (double __x, double __n) __attribute__ ((__nothrow__)); # 72 "/usr/include/math.h" 2 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern float acosf (float __x) __attribute__ ((__nothrow__)); extern float __acosf (float __x) __attribute__ ((__nothrow__)); extern float asinf (float __x) __attribute__ ((__nothrow__)); extern float __asinf (float __x) __attribute__ ((__nothrow__)); extern float atanf (float __x) __attribute__ ((__nothrow__)); extern float __atanf (float __x) __attribute__ ((__nothrow__)); extern float atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float __atan2f (float __y, float __x) __attribute__ ((__nothrow__)); extern float cosf (float __x) __attribute__ ((__nothrow__)); extern float __cosf (float __x) __attribute__ ((__nothrow__)); extern float sinf (float __x) __attribute__ ((__nothrow__)); extern float __sinf (float __x) __attribute__ ((__nothrow__)); extern float tanf (float __x) __attribute__ ((__nothrow__)); extern float __tanf (float __x) __attribute__ ((__nothrow__)); extern float coshf (float __x) __attribute__ ((__nothrow__)); extern float __coshf (float __x) __attribute__ ((__nothrow__)); extern float sinhf (float __x) __attribute__ ((__nothrow__)); extern float __sinhf (float __x) __attribute__ ((__nothrow__)); extern float tanhf (float __x) __attribute__ ((__nothrow__)); extern float __tanhf (float __x) __attribute__ ((__nothrow__)); extern float acoshf (float __x) __attribute__ ((__nothrow__)); extern float __acoshf (float __x) __attribute__ ((__nothrow__)); extern float asinhf (float __x) __attribute__ ((__nothrow__)); extern float __asinhf (float __x) __attribute__ ((__nothrow__)); extern float atanhf (float __x) __attribute__ ((__nothrow__)); extern float __atanhf (float __x) __attribute__ ((__nothrow__)); extern float expf (float __x) __attribute__ ((__nothrow__)); extern float __expf (float __x) __attribute__ ((__nothrow__)); extern float frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float __frexpf (float __x, int *__exponent) __attribute__ ((__nothrow__)); extern float ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float __ldexpf (float __x, int __exponent) __attribute__ ((__nothrow__)); extern float logf (float __x) __attribute__ ((__nothrow__)); extern float __logf (float __x) __attribute__ ((__nothrow__)); extern float log10f (float __x) __attribute__ ((__nothrow__)); extern float __log10f (float __x) __attribute__ ((__nothrow__)); extern float modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); extern float __modff (float __x, float *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern float expm1f (float __x) __attribute__ ((__nothrow__)); extern float __expm1f (float __x) __attribute__ ((__nothrow__)); extern float log1pf (float __x) __attribute__ ((__nothrow__)); extern float __log1pf (float __x) __attribute__ ((__nothrow__)); extern float logbf (float __x) __attribute__ ((__nothrow__)); extern float __logbf (float __x) __attribute__ ((__nothrow__)); extern float exp2f (float __x) __attribute__ ((__nothrow__)); extern float __exp2f (float __x) __attribute__ ((__nothrow__)); extern float log2f (float __x) __attribute__ ((__nothrow__)); extern float __log2f (float __x) __attribute__ ((__nothrow__)); extern float powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __powf (float __x, float __y) __attribute__ ((__nothrow__)); extern float sqrtf (float __x) __attribute__ ((__nothrow__)); extern float __sqrtf (float __x) __attribute__ ((__nothrow__)); extern float hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __hypotf (float __x, float __y) __attribute__ ((__nothrow__)); extern float cbrtf (float __x) __attribute__ ((__nothrow__)); extern float __cbrtf (float __x) __attribute__ ((__nothrow__)); extern float ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __ceilf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __fabsf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __floorf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmodf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinff (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitef (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __dremf (float __x, float __y) __attribute__ ((__nothrow__)); extern float significandf (float __x) __attribute__ ((__nothrow__)); extern float __significandf (float __x) __attribute__ ((__nothrow__)); extern float copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __copysignf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nanf (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float j0f (float) __attribute__ ((__nothrow__)); extern float __j0f (float) __attribute__ ((__nothrow__)); extern float j1f (float) __attribute__ ((__nothrow__)); extern float __j1f (float) __attribute__ ((__nothrow__)); extern float jnf (int, float) __attribute__ ((__nothrow__)); extern float __jnf (int, float) __attribute__ ((__nothrow__)); extern float y0f (float) __attribute__ ((__nothrow__)); extern float __y0f (float) __attribute__ ((__nothrow__)); extern float y1f (float) __attribute__ ((__nothrow__)); extern float __y1f (float) __attribute__ ((__nothrow__)); extern float ynf (int, float) __attribute__ ((__nothrow__)); extern float __ynf (int, float) __attribute__ ((__nothrow__)); extern float erff (float) __attribute__ ((__nothrow__)); extern float __erff (float) __attribute__ ((__nothrow__)); extern float erfcf (float) __attribute__ ((__nothrow__)); extern float __erfcf (float) __attribute__ ((__nothrow__)); extern float lgammaf (float) __attribute__ ((__nothrow__)); extern float __lgammaf (float) __attribute__ ((__nothrow__)); extern float tgammaf (float) __attribute__ ((__nothrow__)); extern float __tgammaf (float) __attribute__ ((__nothrow__)); extern float gammaf (float) __attribute__ ((__nothrow__)); extern float __gammaf (float) __attribute__ ((__nothrow__)); extern float lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float __lgammaf_r (float, int *__signgamp) __attribute__ ((__nothrow__)); extern float rintf (float __x) __attribute__ ((__nothrow__)); extern float __rintf (float __x) __attribute__ ((__nothrow__)); extern float nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nextafterf (float __x, float __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __nexttowardf (float __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __remainderf (float __x, float __y) __attribute__ ((__nothrow__)); extern float scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern float __scalbnf (float __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbf (float __x) __attribute__ ((__nothrow__)); extern int __ilogbf (float __x) __attribute__ ((__nothrow__)); extern float scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float __scalblnf (float __x, long int __n) __attribute__ ((__nothrow__)); extern float nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float __nearbyintf (float __x) __attribute__ ((__nothrow__)); extern float roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __roundf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float __truncf (float __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern float __remquof (float __x, float __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintf (float __x) __attribute__ ((__nothrow__)); extern long int __lrintf (float __x) __attribute__ ((__nothrow__)); extern long long int llrintf (float __x) __attribute__ ((__nothrow__)); extern long long int __llrintf (float __x) __attribute__ ((__nothrow__)); extern long int lroundf (float __x) __attribute__ ((__nothrow__)); extern long int __lroundf (float __x) __attribute__ ((__nothrow__)); extern long long int llroundf (float __x) __attribute__ ((__nothrow__)); extern long long int __llroundf (float __x) __attribute__ ((__nothrow__)); extern float fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fdimf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fmaxf (float __x, float __y) __attribute__ ((__nothrow__)); extern float fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern float __fminf (float __x, float __y) __attribute__ ((__nothrow__)); extern int __fpclassifyf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitf (float __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern float fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float __fmaf (float __x, float __y, float __z) __attribute__ ((__nothrow__)); extern float scalbf (float __x, float __n) __attribute__ ((__nothrow__)); extern float __scalbf (float __x, float __n) __attribute__ ((__nothrow__)); # 95 "/usr/include/math.h" 2 3 # 129 "/usr/include/math.h" 3 # 1 "/usr/include/bits/mathcalls.h" 1 3 extern long double acosl (long double __x) __attribute__ ((__nothrow__)); extern long double __acosl (long double __x) __attribute__ ((__nothrow__)); extern long double asinl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinl (long double __x) __attribute__ ((__nothrow__)); extern long double atanl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanl (long double __x) __attribute__ ((__nothrow__)); extern long double atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double __atan2l (long double __y, long double __x) __attribute__ ((__nothrow__)); extern long double cosl (long double __x) __attribute__ ((__nothrow__)); extern long double __cosl (long double __x) __attribute__ ((__nothrow__)); extern long double sinl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinl (long double __x) __attribute__ ((__nothrow__)); extern long double tanl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanl (long double __x) __attribute__ ((__nothrow__)); extern long double coshl (long double __x) __attribute__ ((__nothrow__)); extern long double __coshl (long double __x) __attribute__ ((__nothrow__)); extern long double sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __sinhl (long double __x) __attribute__ ((__nothrow__)); extern long double tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __tanhl (long double __x) __attribute__ ((__nothrow__)); extern long double acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double __acoshl (long double __x) __attribute__ ((__nothrow__)); extern long double asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double __asinhl (long double __x) __attribute__ ((__nothrow__)); extern long double atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double __atanhl (long double __x) __attribute__ ((__nothrow__)); extern long double expl (long double __x) __attribute__ ((__nothrow__)); extern long double __expl (long double __x) __attribute__ ((__nothrow__)); extern long double frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double __frexpl (long double __x, int *__exponent) __attribute__ ((__nothrow__)); extern long double ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double __ldexpl (long double __x, int __exponent) __attribute__ ((__nothrow__)); extern long double logl (long double __x) __attribute__ ((__nothrow__)); extern long double __logl (long double __x) __attribute__ ((__nothrow__)); extern long double log10l (long double __x) __attribute__ ((__nothrow__)); extern long double __log10l (long double __x) __attribute__ ((__nothrow__)); extern long double modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); extern long double __modfl (long double __x, long double *__iptr) __attribute__ ((__nothrow__)); # 125 "/usr/include/bits/mathcalls.h" 3 extern long double expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double __expm1l (long double __x) __attribute__ ((__nothrow__)); extern long double log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double __log1pl (long double __x) __attribute__ ((__nothrow__)); extern long double logbl (long double __x) __attribute__ ((__nothrow__)); extern long double __logbl (long double __x) __attribute__ ((__nothrow__)); extern long double exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double __exp2l (long double __x) __attribute__ ((__nothrow__)); extern long double log2l (long double __x) __attribute__ ((__nothrow__)); extern long double __log2l (long double __x) __attribute__ ((__nothrow__)); extern long double powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __powl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __sqrtl (long double __x) __attribute__ ((__nothrow__)); extern long double hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __hypotl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double __cbrtl (long double __x) __attribute__ ((__nothrow__)); extern long double ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __ceill (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __fabsl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __floorl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmodl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isinfl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int finitel (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __dreml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double significandl (long double __x) __attribute__ ((__nothrow__)); extern long double __significandl (long double __x) __attribute__ ((__nothrow__)); extern long double copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __copysignl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nanl (__const char *__tagb) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int isnanl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double j0l (long double) __attribute__ ((__nothrow__)); extern long double __j0l (long double) __attribute__ ((__nothrow__)); extern long double j1l (long double) __attribute__ ((__nothrow__)); extern long double __j1l (long double) __attribute__ ((__nothrow__)); extern long double jnl (int, long double) __attribute__ ((__nothrow__)); extern long double __jnl (int, long double) __attribute__ ((__nothrow__)); extern long double y0l (long double) __attribute__ ((__nothrow__)); extern long double __y0l (long double) __attribute__ ((__nothrow__)); extern long double y1l (long double) __attribute__ ((__nothrow__)); extern long double __y1l (long double) __attribute__ ((__nothrow__)); extern long double ynl (int, long double) __attribute__ ((__nothrow__)); extern long double __ynl (int, long double) __attribute__ ((__nothrow__)); extern long double erfl (long double) __attribute__ ((__nothrow__)); extern long double __erfl (long double) __attribute__ ((__nothrow__)); extern long double erfcl (long double) __attribute__ ((__nothrow__)); extern long double __erfcl (long double) __attribute__ ((__nothrow__)); extern long double lgammal (long double) __attribute__ ((__nothrow__)); extern long double __lgammal (long double) __attribute__ ((__nothrow__)); extern long double tgammal (long double) __attribute__ ((__nothrow__)); extern long double __tgammal (long double) __attribute__ ((__nothrow__)); extern long double gammal (long double) __attribute__ ((__nothrow__)); extern long double __gammal (long double) __attribute__ ((__nothrow__)); extern long double lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double __lgammal_r (long double, int *__signgamp) __attribute__ ((__nothrow__)); extern long double rintl (long double __x) __attribute__ ((__nothrow__)); extern long double __rintl (long double __x) __attribute__ ((__nothrow__)); extern long double nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nextafterl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __nexttowardl (long double __x, long double __y) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __remainderl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern long double __scalbnl (long double __x, int __n) __attribute__ ((__nothrow__)); extern int ilogbl (long double __x) __attribute__ ((__nothrow__)); extern int __ilogbl (long double __x) __attribute__ ((__nothrow__)); extern long double scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double __scalblnl (long double __x, long int __n) __attribute__ ((__nothrow__)); extern long double nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double __nearbyintl (long double __x) __attribute__ ((__nothrow__)); extern long double roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __roundl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double __truncl (long double __x) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long double __remquol (long double __x, long double __y, int *__quo) __attribute__ ((__nothrow__)); extern long int lrintl (long double __x) __attribute__ ((__nothrow__)); extern long int __lrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int llrintl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llrintl (long double __x) __attribute__ ((__nothrow__)); extern long int lroundl (long double __x) __attribute__ ((__nothrow__)); extern long int __lroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int llroundl (long double __x) __attribute__ ((__nothrow__)); extern long long int __llroundl (long double __x) __attribute__ ((__nothrow__)); extern long double fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fdiml (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fmaxl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern long double __fminl (long double __x, long double __y) __attribute__ ((__nothrow__)); extern int __fpclassifyl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int __signbitl (long double __value) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern long double fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double __fmal (long double __x, long double __y, long double __z) __attribute__ ((__nothrow__)); extern long double scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); extern long double __scalbl (long double __x, long double __n) __attribute__ ((__nothrow__)); # 142 "/usr/include/math.h" 2 3 extern int signgam; enum { FP_NAN, FP_INFINITE, FP_ZERO, FP_SUBNORMAL, FP_NORMAL }; # 223 "/usr/include/math.h" 3 # 235 "/usr/include/math.h" 3 # 247 "/usr/include/math.h" 3 # 263 "/usr/include/math.h" 3 # 275 "/usr/include/math.h" 3 typedef enum { _IEEE_ = -1, _SVID_, _XOPEN_, _POSIX_, _ISOC_ } _LIB_VERSION_TYPE; extern _LIB_VERSION_TYPE _LIB_VERSION; struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr (struct exception *__exc); # 341 "/usr/include/math.h" 3 # 353 "/usr/include/math.h" 3 # 371 "/usr/include/math.h" 3 # 390 "/usr/include/math.h" 3 # 413 "/usr/include/math.h" 3 # 429 "/usr/include/math.h" 3 # 437 "/usr/include/math.h" 3 # 445 "/usr/include/math.h" 3 # 453 "/usr/include/math.h" 3 # 461 "/usr/include/math.h" 3 # 469 "/usr/include/math.h" 3 # 20 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 2 3 # 36 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 60 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 81 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 99 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 108 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 119 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 131 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 160 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 174 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 199 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 215 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern int fpclassifyf ( float __x ) ; extern int fpclassify ( double __x ) ; extern int fpclassifyd ( double __x ) ; extern int fpclassifyl ( long double __x ) ; extern int __fpclassifyf ( float __x ) ; extern int __fpclassify ( double __x ) ; extern int __fpclassifyd ( double __x ) ; extern int __fpclassifyl ( long double __x ) ; extern int isinff ( float __x ) ; extern int isinf ( double __x ) ; extern int isinfd ( double __x ) ; extern int isinfl ( long double __x ) ; extern int __isinff ( float __x ) ; extern int __isinf ( double __x ) ; extern int __isinfd ( double __x ) ; extern int __isinfl ( long double __x ) ; extern int isnanf ( float __x ) ; extern int isnan ( double __x ) ; extern int isnand ( double __x ) ; extern int isnanl ( long double __x ) ; extern int __isnanf ( float __x ) ; extern int __isnan ( double __x ) ; extern int __isnand ( double __x ) ; extern int __isnanl ( long double __x ) ; extern int isnormalf ( float __x ) ; extern int isnormal ( double __x ) ; extern int isnormald ( double __x ) ; extern int isnormall ( long double __x ) ; extern int __isnormalf ( float __x ) ; extern int __isnormal ( double __x ) ; extern int __isnormald ( double __x ) ; extern int __isnormall ( long double __x ) ; extern int isfinitef ( float __x ) ; extern int isfinite ( double __x ) ; extern int isfinited ( double __x ) ; extern int isfinitel ( long double __x ) ; extern int __isfinitef ( float __x ) ; extern int __isfinite ( double __x ) ; extern int __isfinited ( double __x ) ; extern int __isfinitel ( long double __x ) ; extern int finitef ( float __x ) ; extern int finite ( double __x ) ; extern int finited ( double __x ) ; extern int finitel ( long double __x ) ; extern int __finitef ( float __x ) ; extern int __finite ( double __x ) ; extern int __finited ( double __x ) ; extern int __finitel ( long double __x ) ; extern int signbitf ( float __x ) ; extern int signbit ( double __x ) ; extern int signbitd ( double __x ) ; extern int signbitl ( long double __x ) ; extern int __signbitf ( float __x ) ; extern int __signbit ( double __x ) ; extern int __signbitd ( double __x ) ; extern int __signbitl ( long double __x ) ; # 307 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 328 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 335 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern int isgreaterf( float __xf, float __yf ); extern int isgreater( double __xd, double __yd ); extern int isgreaterl( long double __xl, long double __yl ); extern int __isgreaterf( float __xf, float __yf ); extern int __isgreater( double __xd, double __yd ); extern int __isgreaterl( long double __xl, long double __yl ); extern int isgreaterequalf( float __xf, float __yf ); extern int isgreaterequal( double __xd, double __yd ); extern int isgreaterequall( long double __xl, long double __yl ); extern int __isgreaterequalf( float __xf, float __yf ); extern int __isgreaterequal( double __xd, double __yd ); extern int __isgreaterequall( long double __xl, long double __yl ); extern int islessf( float __xf, float __yf ); extern int isless( double __xd, double __yd ); extern int islessl( long double __xl, long double __yl ); extern int __islessf( float __xf, float __yf ); extern int __isless( double __xd, double __yd ); extern int __islessl( long double __xl, long double __yl ); extern int islessequalf( float __xf, float __yf ); extern int islessequal( double __xd, double __yd ); extern int islessequall( long double __xl, long double __yl ); extern int __islessequalf( float __xf, float __yf ); extern int __islessequal( double __xd, double __yd ); extern int __islessequall( long double __xl, long double __yl ); extern int islessgreaterf( float __xf, float __yf ); extern int islessgreater( double __xd, double __yd ); extern int islessgreaterl( long double __xl, long double __yl ); extern int __islessgreaterf( float __xf, float __yf ); extern int __islessgreater( double __xd, double __yd ); extern int __islessgreaterl( long double __xl, long double __yl ); extern int isunorderedf( float __xf, float __yf ); extern int isunordered( double __xd, double __yd ); extern int isunorderedl( long double __xl, long double __yl ); extern int __isunorderedf( float __xf, float __yf ); extern int __isunordered( double __xd, double __yd ); extern int __isunorderedl( long double __xl, long double __yl ); # 389 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 396 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 412 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 422 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double cot( double __x ); extern float cotf( float __x ); extern long double cotl( long double __x ); extern double cosd( double __x ); extern float cosdf( float __x ); extern long double cosdl( long double __x ); extern double sind( double __x ); extern float sindf( float __x ); extern long double sindl( long double __x ); extern double tand( double __x ); extern float tandf( float __x ); extern long double tandl( long double __x ); extern double cotd( double __x ); extern float cotdf( float __x ); extern long double cotdl( long double __x ); extern double acosd( double __x ); extern float acosdf( float __x ); extern long double acosdl( long double __x ); extern double asind( double __x ); extern float asindf( float __x ); extern long double asindl( long double __x ); extern double atand( double __x ); extern float atandf( float __x ); extern long double atandl( long double __x ); extern double atand2( double __y, double __x ); extern float atand2f( float __y, float __x ); extern long double atand2l( long double __y, long double __x ); extern double atan2d( double __y, double __x ); extern float atan2df( float __y, float __x ); extern long double atan2dl( long double __y, long double __x ); extern void sincosd( double __x, double *__psin, double *__pcos ); extern void sincosdf( float __x, float *__psin, float *__pcos ); extern void sincosdl( long double __x, long double *__psin, long double *__pcos ); # 488 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern void sinhcosh( double __x, double *__psinh, double *__pcosh ); extern void sinhcoshf( float __x, float *__psinh, float *__pcosh ); extern void sinhcoshl( long double __x, long double *__psinh, long double *__pcosh ); # 502 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 529 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 543 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 578 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 601 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 620 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 631 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 640 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double invsqrt( double __x ); extern float invsqrtf( float __x ); extern long double invsqrtl( long double __x ); # 659 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double cdfnorminv( double __x ); extern float cdfnorminvf( float __x ); extern double erfinv( double __x ); extern float erfinvf( float __x ); extern long double erfinvl( long double __x ); extern double gamma_r( double __x, int *__signgam ); extern float gammaf_r( float __x, int *__signgam ); extern long double gammal_r( long double __x, int *__signgam ); # 680 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 696 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 714 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 734 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 753 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 768 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 777 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 800 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern double annuity( double __x, double __y ); extern double compound( double __x, double __y ); extern float annuityf( float __x, float __y ); extern long double annuityl( long double __x, long double __y ); extern float compoundf( float __x, float __y ); extern long double compoundl( long double __x, long double __y ); # 820 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 831 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 842 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 883 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 904 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1059 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1073 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef struct ____exception { int type; const char *name; double arg1; double arg2; double retval; } ___exception; # 1094 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef struct ____exceptionf { int type; const char *name; float arg1; float arg2; float retval; } ___exceptionf; typedef struct ____exceptionl { int type; const char *name; long double arg1; long double arg2; long double retval; } ___exceptionl; extern int matherrf( struct ____exceptionf *__e ); extern int matherrl( struct ____exceptionl *__e ); # 1126 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 typedef int ( *___pmatherr )( struct ____exception *__e ); typedef int ( *___pmatherrf )( struct ____exceptionf *__e ); typedef int ( *___pmatherrl )( struct ____exceptionl *__e ); extern ___pmatherr __libm_setusermatherr( ___pmatherr __user_matherr ); extern ___pmatherrf __libm_setusermatherrf( ___pmatherrf __user_matherrf ); extern ___pmatherrl __libm_setusermatherrl( ___pmatherrl __user_matherrl ); # 1164 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 extern _LIB_VERSION_TYPE _LIB_VERSIONIMF; # 1178 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 1391 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/math.h" 3 # 46 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 1 3 # 1 "/usr/include/complex.h" 1 3 # 1 "/usr/include/bits/mathdef.h" 1 3 # 30 "/usr/include/complex.h" 2 3 # 64 "/usr/include/complex.h" 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern double _Complex cacos (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __cacos (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex casin (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __casin (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex catan (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __catan (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex ccos (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __ccos (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex csin (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __csin (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex ctan (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __ctan (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex cacosh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __cacosh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex casinh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __casinh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex catanh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __catanh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex ccosh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __ccosh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex csinh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __csinh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex ctanh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __ctanh (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex cexp (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __cexp (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex clog (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __clog (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex cpow (double _Complex __x, double _Complex __y) __attribute__ ((__nothrow__)); extern double _Complex __cpow (double _Complex __x, double _Complex __y) __attribute__ ((__nothrow__)); extern double _Complex csqrt (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __csqrt (double _Complex __z) __attribute__ ((__nothrow__)); extern double cabs (double _Complex __z) __attribute__ ((__nothrow__)); extern double __cabs (double _Complex __z) __attribute__ ((__nothrow__)); extern double carg (double _Complex __z) __attribute__ ((__nothrow__)); extern double __carg (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex conj (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __conj (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex cproj (double _Complex __z) __attribute__ ((__nothrow__)); extern double _Complex __cproj (double _Complex __z) __attribute__ ((__nothrow__)); extern double cimag (double _Complex __z) __attribute__ ((__nothrow__)); extern double __cimag (double _Complex __z) __attribute__ ((__nothrow__)); extern double creal (double _Complex __z) __attribute__ ((__nothrow__)); extern double __creal (double _Complex __z) __attribute__ ((__nothrow__)); # 68 "/usr/include/complex.h" 2 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern float _Complex cacosf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __cacosf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex casinf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __casinf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex catanf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __catanf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex ccosf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __ccosf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex csinf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __csinf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex ctanf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __ctanf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex cacoshf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __cacoshf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex casinhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __casinhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex catanhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __catanhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex ccoshf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __ccoshf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex csinhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __csinhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex ctanhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __ctanhf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex cexpf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __cexpf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex clogf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __clogf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex cpowf (float _Complex __x, float _Complex __y) __attribute__ ((__nothrow__)); extern float _Complex __cpowf (float _Complex __x, float _Complex __y) __attribute__ ((__nothrow__)); extern float _Complex csqrtf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __csqrtf (float _Complex __z) __attribute__ ((__nothrow__)); extern float cabsf (float _Complex __z) __attribute__ ((__nothrow__)); extern float __cabsf (float _Complex __z) __attribute__ ((__nothrow__)); extern float cargf (float _Complex __z) __attribute__ ((__nothrow__)); extern float __cargf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex conjf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __conjf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex cprojf (float _Complex __z) __attribute__ ((__nothrow__)); extern float _Complex __cprojf (float _Complex __z) __attribute__ ((__nothrow__)); extern float cimagf (float _Complex __z) __attribute__ ((__nothrow__)); extern float __cimagf (float _Complex __z) __attribute__ ((__nothrow__)); extern float crealf (float _Complex __z) __attribute__ ((__nothrow__)); extern float __crealf (float _Complex __z) __attribute__ ((__nothrow__)); # 82 "/usr/include/complex.h" 2 3 # 94 "/usr/include/complex.h" 3 # 1 "/usr/include/bits/cmathcalls.h" 1 3 extern long double _Complex cacosl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __cacosl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex casinl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __casinl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex catanl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __catanl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex ccosl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __ccosl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex csinl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __csinl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex ctanl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __ctanl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex cacoshl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __cacoshl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex casinhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __casinhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex catanhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __catanhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex ccoshl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __ccoshl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex csinhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __csinhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex ctanhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __ctanhl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex cexpl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __cexpl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex clogl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __clogl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex cpowl (long double _Complex __x, long double _Complex __y) __attribute__ ((__nothrow__)); extern long double _Complex __cpowl (long double _Complex __x, long double _Complex __y) __attribute__ ((__nothrow__)); extern long double _Complex csqrtl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __csqrtl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double cabsl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double __cabsl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double cargl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double __cargl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex conjl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __conjl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex cprojl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double _Complex __cprojl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double cimagl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double __cimagl (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double creall (long double _Complex __z) __attribute__ ((__nothrow__)); extern long double __creall (long double _Complex __z) __attribute__ ((__nothrow__)); # 105 "/usr/include/complex.h" 2 3 # 111 "/usr/include/complex.h" 3 # 19 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 2 3 # 55 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 69 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 84 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 111 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 extern double _Complex cis( double __x ); extern float _Complex cisf( float __x ); extern long double _Complex cisl( long double __x ); extern double _Complex cisd( double __x ); extern float _Complex cisdf( float __x ); extern long double _Complex cisdl( long double __x ); # 128 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 extern double _Complex cexp2( double _Complex __z ); extern float _Complex cexp2f( float _Complex __z ); extern long double _Complex cexp2l( long double _Complex __z ); extern double _Complex cexp10( double _Complex __z ); extern float _Complex cexp10f( float _Complex __z ); extern long double _Complex cexp10l( long double _Complex __z ); # 158 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 167 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 extern double _Complex clog2( double _Complex __z ); extern float _Complex clog2f( float _Complex __z ); extern long double _Complex clog2l( long double _Complex __z ); extern double _Complex clog10( double _Complex __z ); extern float _Complex clog10f( float _Complex __z ); extern long double _Complex clog10l( long double _Complex __z ); # 190 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 208 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 234 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 265 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 280 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/complex.h" 3 # 48 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 2 3 # 62 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 86 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 107 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 125 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 136 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 149 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 181 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 190 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 215 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 231 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern int fpclassifyf ( float __x ) ; extern int fpclassify ( double __x ) ; extern int fpclassifyd ( double __x ) ; extern int fpclassifyl ( long double __x ) ; extern int __fpclassifyf ( float __x ) ; extern int __fpclassify ( double __x ) ; extern int __fpclassifyd ( double __x ) ; extern int __fpclassifyl ( long double __x ) ; extern int isinff ( float __x ) ; extern int isinf ( double __x ) ; extern int isinfd ( double __x ) ; extern int isinfl ( long double __x ) ; extern int __isinff ( float __x ) ; extern int __isinf ( double __x ) ; extern int __isinfd ( double __x ) ; extern int __isinfl ( long double __x ) ; extern int isnanf ( float __x ) ; extern int isnan ( double __x ) ; extern int isnand ( double __x ) ; extern int isnanl ( long double __x ) ; extern int __isnanf ( float __x ) ; extern int __isnan ( double __x ) ; extern int __isnand ( double __x ) ; extern int __isnanl ( long double __x ) ; extern int isnormalf ( float __x ) ; extern int isnormal ( double __x ) ; extern int isnormald ( double __x ) ; extern int isnormall ( long double __x ) ; extern int __isnormalf ( float __x ) ; extern int __isnormal ( double __x ) ; extern int __isnormald ( double __x ) ; extern int __isnormall ( long double __x ) ; extern int isfinitef ( float __x ) ; extern int isfinite ( double __x ) ; extern int isfinited ( double __x ) ; extern int isfinitel ( long double __x ) ; extern int __isfinitef ( float __x ) ; extern int __isfinite ( double __x ) ; extern int __isfinited ( double __x ) ; extern int __isfinitel ( long double __x ) ; extern int finitef ( float __x ) ; extern int finite ( double __x ) ; extern int finited ( double __x ) ; extern int finitel ( long double __x ) ; extern int __finitef ( float __x ) ; extern int __finite ( double __x ) ; extern int __finited ( double __x ) ; extern int __finitel ( long double __x ) ; extern int signbitf ( float __x ) ; extern int signbit ( double __x ) ; extern int signbitd ( double __x ) ; extern int signbitl ( long double __x ) ; extern int __signbitf ( float __x ) ; extern int __signbit ( double __x ) ; extern int __signbitd ( double __x ) ; extern int __signbitl ( long double __x ) ; # 319 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 340 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 347 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern int isgreaterf( float __xf, float __yf ); extern int isgreater( double __xd, double __yd ); extern int isgreaterl( long double __xl, long double __yl ); extern int __isgreaterf( float __xf, float __yf ); extern int __isgreater( double __xd, double __yd ); extern int __isgreaterl( long double __xl, long double __yl ); extern int isgreaterequalf( float __xf, float __yf ); extern int isgreaterequal( double __xd, double __yd ); extern int isgreaterequall( long double __xl, long double __yl ); extern int __isgreaterequalf( float __xf, float __yf ); extern int __isgreaterequal( double __xd, double __yd ); extern int __isgreaterequall( long double __xl, long double __yl ); extern int islessf( float __xf, float __yf ); extern int isless( double __xd, double __yd ); extern int islessl( long double __xl, long double __yl ); extern int __islessf( float __xf, float __yf ); extern int __isless( double __xd, double __yd ); extern int __islessl( long double __xl, long double __yl ); extern int islessequalf( float __xf, float __yf ); extern int islessequal( double __xd, double __yd ); extern int islessequall( long double __xl, long double __yl ); extern int __islessequalf( float __xf, float __yf ); extern int __islessequal( double __xd, double __yd ); extern int __islessequall( long double __xl, long double __yl ); extern int islessgreaterf( float __xf, float __yf ); extern int islessgreater( double __xd, double __yd ); extern int islessgreaterl( long double __xl, long double __yl ); extern int __islessgreaterf( float __xf, float __yf ); extern int __islessgreater( double __xd, double __yd ); extern int __islessgreaterl( long double __xl, long double __yl ); extern int isunorderedf( float __xf, float __yf ); extern int isunordered( double __xd, double __yd ); extern int isunorderedl( long double __xl, long double __yl ); extern int __isunorderedf( float __xf, float __yf ); extern int __isunordered( double __xd, double __yd ); extern int __isunorderedl( long double __xl, long double __yl ); # 401 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 408 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 424 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 434 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double cot( double __x ); extern float cotf( float __x ); extern long double cotl( long double __x ); extern double cosd( double __x ); extern float cosdf( float __x ); extern long double cosdl( long double __x ); extern double sind( double __x ); extern float sindf( float __x ); extern long double sindl( long double __x ); extern double tand( double __x ); extern float tandf( float __x ); extern long double tandl( long double __x ); extern double cotd( double __x ); extern float cotdf( float __x ); extern long double cotdl( long double __x ); extern double acosd( double __x ); extern float acosdf( float __x ); extern long double acosdl( long double __x ); extern double asind( double __x ); extern float asindf( float __x ); extern long double asindl( long double __x ); extern double atand( double __x ); extern float atandf( float __x ); extern long double atandl( long double __x ); extern double atand2( double __y, double __x ); extern float atand2f( float __y, float __x ); extern long double atand2l( long double __y, long double __x ); extern double atan2d( double __y, double __x ); extern float atan2df( float __y, float __x ); extern long double atan2dl( long double __y, long double __x ); extern void sincosd( double __x, double *__psin, double *__pcos ); extern void sincosdf( float __x, float *__psin, float *__pcos ); extern void sincosdl( long double __x, long double *__psin, long double *__pcos ); # 500 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern void sinhcosh( double __x, double *__psinh, double *__pcosh ); extern void sinhcoshf( float __x, float *__psinh, float *__pcosh ); extern void sinhcoshl( long double __x, long double *__psinh, long double *__pcosh ); # 514 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 541 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 555 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 590 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 613 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 632 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 642 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 650 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double invsqrt( double __x ); extern float invsqrtf( float __x ); extern long double invsqrtl( long double __x ); # 669 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double cdfnorminv( double __x ); extern float cdfnorminvf( float __x ); extern double erfinv( double __x ); extern float erfinvf( float __x ); extern long double erfinvl( long double __x ); extern double gamma_r( double __x, int *__signgam ); extern float gammaf_r( float __x, int *__signgam ); extern long double gammal_r( long double __x, int *__signgam ); # 691 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 707 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 725 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 745 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 764 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 779 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 788 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 811 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double annuity( double __x, double __y ); extern double compound( double __x, double __y ); extern float annuityf( float __x, float __y ); extern long double annuityl( long double __x, long double __y ); extern float compoundf( float __x, float __y ); extern long double compoundl( long double __x, long double __y ); # 831 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 842 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 853 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 912 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1020 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1037 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1064 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double _Complex cis( double __x ); extern float _Complex cisf( float __x ); extern long double _Complex cisl( long double __x ); extern double _Complex cisd( double __x ); extern float _Complex cisdf( float __x ); extern long double _Complex cisdl( long double __x ); # 1081 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double _Complex cexp2( double _Complex __z ); extern float _Complex cexp2f( float _Complex __z ); extern long double _Complex cexp2l( long double _Complex __z ); extern double _Complex cexp10( double _Complex __z ); extern float _Complex cexp10f( float _Complex __z ); extern long double _Complex cexp10l( long double _Complex __z ); # 1111 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1120 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 extern double _Complex clog2( double _Complex __z ); extern float _Complex clog2f( float _Complex __z ); extern long double _Complex clog2l( long double _Complex __z ); extern double _Complex clog10( double _Complex __z ); extern float _Complex clog10f( float _Complex __z ); extern long double _Complex clog10l( long double _Complex __z ); # 1143 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1161 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1187 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1218 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1234 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1322 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1337 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1550 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 1564 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/mathimf.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATHIMF_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/procfs.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 32 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 typedef __time_t time_t; # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 28 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 30 "/usr/include/sys/time.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 32 "/usr/include/sys/time.h" 2 3 # 52 "/usr/include/sys/time.h" 3 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) __attribute__ ((__nothrow__)); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) __attribute__ ((__nothrow__)); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) __attribute__ ((__nothrow__)); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) __attribute__ ((__nothrow__)); # 159 "/usr/include/sys/time.h" 3 # 190 "/usr/include/sys/time.h" 3 # 33 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/types.h" 1 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 34 "/usr/include/sys/procfs.h" 2 3 # 1 "/usr/include/sys/user.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 27 "/usr/include/sys/user.h" 2 3 struct user_fpregs_struct { __uint16_t cwd; __uint16_t swd; __uint16_t ftw; __uint16_t fop; __uint64_t rip; __uint64_t rdp; __uint32_t mxcsr; __uint32_t mxcr_mask; __uint32_t st_space[32]; __uint32_t xmm_space[64]; __uint32_t padding[24]; }; struct user_regs_struct { unsigned long r15; unsigned long r14; unsigned long r13; unsigned long r12; unsigned long rbp; unsigned long rbx; unsigned long r11; unsigned long r10; unsigned long r9; unsigned long r8; unsigned long rax; unsigned long rcx; unsigned long rdx; unsigned long rsi; unsigned long rdi; unsigned long orig_rax; unsigned long rip; unsigned long cs; unsigned long eflags; unsigned long rsp; unsigned long ss; unsigned long fs_base; unsigned long gs_base; unsigned long ds; unsigned long es; unsigned long fs; unsigned long gs; }; struct user { struct user_regs_struct regs; int u_fpvalid; struct user_fpregs_struct i387; unsigned long int u_tsize; unsigned long int u_dsize; unsigned long int u_ssize; unsigned long start_code; unsigned long start_stack; long int signal; int reserved; struct user_regs_struct* u_ar0; struct user_fpregs_struct* u_fpstate; unsigned long int magic; char u_comm [32]; unsigned long int u_debugreg [8]; }; # 166 "/usr/include/sys/user.h" 3 # 174 "/usr/include/sys/user.h" 3 # 35 "/usr/include/sys/procfs.h" 2 3 typedef unsigned long elf_greg_t; typedef elf_greg_t elf_gregset_t[(sizeof (struct user_regs_struct) / sizeof(elf_greg_t))]; # 57 "/usr/include/sys/procfs.h" 3 typedef struct user_fpregs_struct elf_fpregset_t; struct elf_siginfo { int si_signo; int si_code; int si_errno; }; struct elf_prstatus { struct elf_siginfo pr_info; short int pr_cursig; unsigned long int pr_sigpend; unsigned long int pr_sighold; __pid_t pr_pid; __pid_t pr_ppid; __pid_t pr_pgrp; __pid_t pr_sid; struct timeval pr_utime; struct timeval pr_stime; struct timeval pr_cutime; struct timeval pr_cstime; elf_gregset_t pr_reg; int pr_fpvalid; }; struct elf_prpsinfo { char pr_state; char pr_sname; char pr_zomb; char pr_nice; unsigned long int pr_flag; unsigned int pr_uid; unsigned int pr_gid; int pr_pid, pr_ppid, pr_pgrp, pr_sid; char pr_fname[16]; char pr_psargs[(80)]; }; typedef void *psaddr_t; typedef elf_gregset_t prgregset_t; typedef elf_fpregset_t prfpregset_t; typedef __pid_t lwpid_t; typedef struct elf_prstatus prstatus_t; typedef struct elf_prpsinfo prpsinfo_t; # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PROCFS_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/resource.h" 2 3 # 1 "/usr/include/bits/resource.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 26 "/usr/include/bits/resource.h" 2 3 enum __rlimit_resource { RLIMIT_CPU = 0, RLIMIT_FSIZE = 1, RLIMIT_DATA = 2, RLIMIT_STACK = 3, RLIMIT_CORE = 4, __RLIMIT_RSS = 5, RLIMIT_NOFILE = 7, __RLIMIT_OFILE = RLIMIT_NOFILE, RLIMIT_AS = 9, __RLIMIT_NPROC = 6, __RLIMIT_MEMLOCK = 8, __RLIMIT_LOCKS = 10, __RLIMIT_SIGPENDING = 11, __RLIMIT_MSGQUEUE = 12, __RLIMIT_NICE = 13, __RLIMIT_RTPRIO = 14, __RLIMIT_NLIMITS = 15, __RLIM_NLIMITS = __RLIMIT_NLIMITS }; typedef __rlim_t rlim_t; # 134 "/usr/include/bits/resource.h" 3 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 152 "/usr/include/bits/resource.h" 3 enum __rusage_who { RUSAGE_SELF = 0, RUSAGE_CHILDREN = -1 # 172 "/usr/include/bits/resource.h" 3 }; # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 176 "/usr/include/bits/resource.h" 2 3 struct rusage { struct timeval ru_utime; struct timeval ru_stime; long int ru_maxrss; long int ru_ixrss; long int ru_idrss; long int ru_isrss; long int ru_minflt; long int ru_majflt; long int ru_nswap; long int ru_inblock; long int ru_oublock; long int ru_msgsnd; long int ru_msgrcv; long int ru_nsignals; long int ru_nvcsw; long int ru_nivcsw; }; enum __priority_which { PRIO_PROCESS = 0, PRIO_PGRP = 1, PRIO_USER = 2 }; # 26 "/usr/include/sys/resource.h" 2 3 typedef __id_t id_t; typedef int __rlimit_resource_t; typedef int __rusage_who_t; typedef int __priority_which_t; extern int getrlimit (__rlimit_resource_t __resource, struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 65 "/usr/include/sys/resource.h" 3 extern int setrlimit (__rlimit_resource_t __resource, __const struct rlimit *__rlimits) __attribute__ ((__nothrow__)); # 85 "/usr/include/sys/resource.h" 3 extern int getrusage (__rusage_who_t __who, struct rusage *__usage) __attribute__ ((__nothrow__)); extern int getpriority (__priority_which_t __which, id_t __who) __attribute__ ((__nothrow__)); extern int setpriority (__priority_which_t __which, id_t __who, int __prio) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/unistd.h" 2 3 # 49 "/usr/include/unistd.h" 3 # 66 "/usr/include/unistd.h" 3 # 96 "/usr/include/unistd.h" 3 # 1 "/usr/include/bits/posix_opt.h" 1 3 # 204 "/usr/include/unistd.h" 2 3 # 1 "/usr/include/bits/environments.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/environments.h" 2 3 # 91 "/usr/include/bits/environments.h" 3 # 208 "/usr/include/unistd.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 219 "/usr/include/unistd.h" 2 3 typedef __ssize_t ssize_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 228 "/usr/include/unistd.h" 2 3 typedef __gid_t gid_t; typedef __uid_t uid_t; typedef __off_t off_t; # 254 "/usr/include/unistd.h" 3 typedef __useconds_t useconds_t; typedef __pid_t pid_t; typedef __intptr_t intptr_t; typedef __socklen_t socklen_t; extern int access (__const char *__name, int __type) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 300 "/usr/include/unistd.h" 3 extern int faccessat (int __fd, __const char *__file, int __type, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern __off_t lseek (int __fd, __off_t __offset, int __whence) __attribute__ ((__nothrow__)); # 345 "/usr/include/unistd.h" 3 extern int close (int __fd); extern ssize_t read (int __fd, void *__buf, size_t __nbytes) ; extern ssize_t write (int __fd, __const void *__buf, size_t __n) ; extern ssize_t pread (int __fd, void *__buf, size_t __nbytes, __off_t __offset) ; extern ssize_t pwrite (int __fd, __const void *__buf, size_t __n, __off_t __offset) ; # 396 "/usr/include/unistd.h" 3 # 409 "/usr/include/unistd.h" 3 extern int pipe (int __pipedes[2]) __attribute__ ((__nothrow__)) ; extern unsigned int alarm (unsigned int __seconds) __attribute__ ((__nothrow__)); extern unsigned int sleep (unsigned int __seconds); extern __useconds_t ualarm (__useconds_t __value, __useconds_t __interval) __attribute__ ((__nothrow__)); extern int usleep (__useconds_t __useconds); extern int pause (void); extern int chown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchown (int __fd, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) ; extern int lchown (__const char *__file, __uid_t __owner, __gid_t __group) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchownat (int __fd, __const char *__file, __uid_t __owner, __gid_t __group, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern int chdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int fchdir (int __fd) __attribute__ ((__nothrow__)) ; extern char *getcwd (char *__buf, size_t __size) __attribute__ ((__nothrow__)) ; # 516 "/usr/include/unistd.h" 3 extern char *getwd (char *__buf) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)) ; extern int dup (int __fd) __attribute__ ((__nothrow__)) ; extern int dup2 (int __fd, int __fd2) __attribute__ ((__nothrow__)); extern char **__environ; extern int execve (__const char *__path, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int fexecve (int __fd, char *__const __argv[], char *__const __envp[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int execv (__const char *__path, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execle (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execl (__const char *__path, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execvp (__const char *__file, char *__const __argv[]) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); extern int execlp (__const char *__file, __const char *__arg, ...) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))); # 591 "/usr/include/unistd.h" 3 extern int nice (int __inc) __attribute__ ((__nothrow__)) ; extern void _exit (int __status) __attribute__ ((__noreturn__)); # 1 "/usr/include/bits/confname.h" 1 3 enum { _PC_LINK_MAX, _PC_MAX_CANON, _PC_MAX_INPUT, _PC_NAME_MAX, _PC_PATH_MAX, _PC_PIPE_BUF, _PC_CHOWN_RESTRICTED, _PC_NO_TRUNC, _PC_VDISABLE, _PC_SYNC_IO, _PC_ASYNC_IO, _PC_PRIO_IO, _PC_SOCK_MAXBUF, _PC_FILESIZEBITS, _PC_REC_INCR_XFER_SIZE, _PC_REC_MAX_XFER_SIZE, _PC_REC_MIN_XFER_SIZE, _PC_REC_XFER_ALIGN, _PC_ALLOC_SIZE_MIN, _PC_SYMLINK_MAX, _PC_2_SYMLINKS }; enum { _SC_ARG_MAX, _SC_CHILD_MAX, _SC_CLK_TCK, _SC_NGROUPS_MAX, _SC_OPEN_MAX, _SC_STREAM_MAX, _SC_TZNAME_MAX, _SC_JOB_CONTROL, _SC_SAVED_IDS, _SC_REALTIME_SIGNALS, _SC_PRIORITY_SCHEDULING, _SC_TIMERS, _SC_ASYNCHRONOUS_IO, _SC_PRIORITIZED_IO, _SC_SYNCHRONIZED_IO, _SC_FSYNC, _SC_MAPPED_FILES, _SC_MEMLOCK, _SC_MEMLOCK_RANGE, _SC_MEMORY_PROTECTION, _SC_MESSAGE_PASSING, _SC_SEMAPHORES, _SC_SHARED_MEMORY_OBJECTS, _SC_AIO_LISTIO_MAX, _SC_AIO_MAX, _SC_AIO_PRIO_DELTA_MAX, _SC_DELAYTIMER_MAX, _SC_MQ_OPEN_MAX, _SC_MQ_PRIO_MAX, _SC_VERSION, _SC_PAGESIZE, _SC_RTSIG_MAX, _SC_SEM_NSEMS_MAX, _SC_SEM_VALUE_MAX, _SC_SIGQUEUE_MAX, _SC_TIMER_MAX, _SC_BC_BASE_MAX, _SC_BC_DIM_MAX, _SC_BC_SCALE_MAX, _SC_BC_STRING_MAX, _SC_COLL_WEIGHTS_MAX, _SC_EQUIV_CLASS_MAX, _SC_EXPR_NEST_MAX, _SC_LINE_MAX, _SC_RE_DUP_MAX, _SC_CHARCLASS_NAME_MAX, _SC_2_VERSION, _SC_2_C_BIND, _SC_2_C_DEV, _SC_2_FORT_DEV, _SC_2_FORT_RUN, _SC_2_SW_DEV, _SC_2_LOCALEDEF, _SC_PII, _SC_PII_XTI, _SC_PII_SOCKET, _SC_PII_INTERNET, _SC_PII_OSI, _SC_POLL, _SC_SELECT, _SC_UIO_MAXIOV, _SC_IOV_MAX = _SC_UIO_MAXIOV, _SC_PII_INTERNET_STREAM, _SC_PII_INTERNET_DGRAM, _SC_PII_OSI_COTS, _SC_PII_OSI_CLTS, _SC_PII_OSI_M, _SC_T_IOV_MAX, _SC_THREADS, _SC_THREAD_SAFE_FUNCTIONS, _SC_GETGR_R_SIZE_MAX, _SC_GETPW_R_SIZE_MAX, _SC_LOGIN_NAME_MAX, _SC_TTY_NAME_MAX, _SC_THREAD_DESTRUCTOR_ITERATIONS, _SC_THREAD_KEYS_MAX, _SC_THREAD_STACK_MIN, _SC_THREAD_THREADS_MAX, _SC_THREAD_ATTR_STACKADDR, _SC_THREAD_ATTR_STACKSIZE, _SC_THREAD_PRIORITY_SCHEDULING, _SC_THREAD_PRIO_INHERIT, _SC_THREAD_PRIO_PROTECT, _SC_THREAD_PROCESS_SHARED, _SC_NPROCESSORS_CONF, _SC_NPROCESSORS_ONLN, _SC_PHYS_PAGES, _SC_AVPHYS_PAGES, _SC_ATEXIT_MAX, _SC_PASS_MAX, _SC_XOPEN_VERSION, _SC_XOPEN_XCU_VERSION, _SC_XOPEN_UNIX, _SC_XOPEN_CRYPT, _SC_XOPEN_ENH_I18N, _SC_XOPEN_SHM, _SC_2_CHAR_TERM, _SC_2_C_VERSION, _SC_2_UPE, _SC_XOPEN_XPG2, _SC_XOPEN_XPG3, _SC_XOPEN_XPG4, _SC_CHAR_BIT, _SC_CHAR_MAX, _SC_CHAR_MIN, _SC_INT_MAX, _SC_INT_MIN, _SC_LONG_BIT, _SC_WORD_BIT, _SC_MB_LEN_MAX, _SC_NZERO, _SC_SSIZE_MAX, _SC_SCHAR_MAX, _SC_SCHAR_MIN, _SC_SHRT_MAX, _SC_SHRT_MIN, _SC_UCHAR_MAX, _SC_UINT_MAX, _SC_ULONG_MAX, _SC_USHRT_MAX, _SC_NL_ARGMAX, _SC_NL_LANGMAX, _SC_NL_MSGMAX, _SC_NL_NMAX, _SC_NL_SETMAX, _SC_NL_TEXTMAX, _SC_XBS5_ILP32_OFF32, _SC_XBS5_ILP32_OFFBIG, _SC_XBS5_LP64_OFF64, _SC_XBS5_LPBIG_OFFBIG, _SC_XOPEN_LEGACY, _SC_XOPEN_REALTIME, _SC_XOPEN_REALTIME_THREADS, _SC_ADVISORY_INFO, _SC_BARRIERS, _SC_BASE, _SC_C_LANG_SUPPORT, _SC_C_LANG_SUPPORT_R, _SC_CLOCK_SELECTION, _SC_CPUTIME, _SC_THREAD_CPUTIME, _SC_DEVICE_IO, _SC_DEVICE_SPECIFIC, _SC_DEVICE_SPECIFIC_R, _SC_FD_MGMT, _SC_FIFO, _SC_PIPE, _SC_FILE_ATTRIBUTES, _SC_FILE_LOCKING, _SC_FILE_SYSTEM, _SC_MONOTONIC_CLOCK, _SC_MULTI_PROCESS, _SC_SINGLE_PROCESS, _SC_NETWORKING, _SC_READER_WRITER_LOCKS, _SC_SPIN_LOCKS, _SC_REGEXP, _SC_REGEX_VERSION, _SC_SHELL, _SC_SIGNALS, _SC_SPAWN, _SC_SPORADIC_SERVER, _SC_THREAD_SPORADIC_SERVER, _SC_SYSTEM_DATABASE, _SC_SYSTEM_DATABASE_R, _SC_TIMEOUTS, _SC_TYPED_MEMORY_OBJECTS, _SC_USER_GROUPS, _SC_USER_GROUPS_R, _SC_2_PBS, _SC_2_PBS_ACCOUNTING, _SC_2_PBS_LOCATE, _SC_2_PBS_MESSAGE, _SC_2_PBS_TRACK, _SC_SYMLOOP_MAX, _SC_STREAMS, _SC_2_PBS_CHECKPOINT, _SC_V6_ILP32_OFF32, _SC_V6_ILP32_OFFBIG, _SC_V6_LP64_OFF64, _SC_V6_LPBIG_OFFBIG, _SC_HOST_NAME_MAX, _SC_TRACE, _SC_TRACE_EVENT_FILTER, _SC_TRACE_INHERIT, _SC_TRACE_LOG, _SC_LEVEL1_ICACHE_SIZE, _SC_LEVEL1_ICACHE_ASSOC, _SC_LEVEL1_ICACHE_LINESIZE, _SC_LEVEL1_DCACHE_SIZE, _SC_LEVEL1_DCACHE_ASSOC, _SC_LEVEL1_DCACHE_LINESIZE, _SC_LEVEL2_CACHE_SIZE, _SC_LEVEL2_CACHE_ASSOC, _SC_LEVEL2_CACHE_LINESIZE, _SC_LEVEL3_CACHE_SIZE, _SC_LEVEL3_CACHE_ASSOC, _SC_LEVEL3_CACHE_LINESIZE, _SC_LEVEL4_CACHE_SIZE, _SC_LEVEL4_CACHE_ASSOC, _SC_LEVEL4_CACHE_LINESIZE, _SC_IPV6 = _SC_LEVEL1_ICACHE_SIZE + 50, _SC_RAW_SOCKETS, _SC_V7_ILP32_OFF32, _SC_V7_ILP32_OFFBIG, _SC_V7_LP64_OFF64, _SC_V7_LPBIG_OFFBIG, _SC_SS_REPL_MAX, _SC_TRACE_EVENT_NAME_MAX, _SC_TRACE_NAME_MAX, _SC_TRACE_SYS_MAX, _SC_TRACE_USER_EVENT_MAX, _SC_XOPEN_STREAMS, _SC_THREAD_ROBUST_PRIO_INHERIT, _SC_THREAD_ROBUST_PRIO_PROTECT }; enum { _CS_PATH, _CS_V6_WIDTH_RESTRICTED_ENVS, _CS_GNU_LIBC_VERSION, _CS_GNU_LIBPTHREAD_VERSION, _CS_V5_WIDTH_RESTRICTED_ENVS, _CS_V7_WIDTH_RESTRICTED_ENVS, _CS_LFS_CFLAGS = 1000, _CS_LFS_LDFLAGS, _CS_LFS_LIBS, _CS_LFS_LINTFLAGS, _CS_LFS64_CFLAGS, _CS_LFS64_LDFLAGS, _CS_LFS64_LIBS, _CS_LFS64_LINTFLAGS, _CS_XBS5_ILP32_OFF32_CFLAGS = 1100, _CS_XBS5_ILP32_OFF32_LDFLAGS, _CS_XBS5_ILP32_OFF32_LIBS, _CS_XBS5_ILP32_OFF32_LINTFLAGS, _CS_XBS5_ILP32_OFFBIG_CFLAGS, _CS_XBS5_ILP32_OFFBIG_LDFLAGS, _CS_XBS5_ILP32_OFFBIG_LIBS, _CS_XBS5_ILP32_OFFBIG_LINTFLAGS, _CS_XBS5_LP64_OFF64_CFLAGS, _CS_XBS5_LP64_OFF64_LDFLAGS, _CS_XBS5_LP64_OFF64_LIBS, _CS_XBS5_LP64_OFF64_LINTFLAGS, _CS_XBS5_LPBIG_OFFBIG_CFLAGS, _CS_XBS5_LPBIG_OFFBIG_LDFLAGS, _CS_XBS5_LPBIG_OFFBIG_LIBS, _CS_XBS5_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V6_ILP32_OFF32_CFLAGS, _CS_POSIX_V6_ILP32_OFF32_LDFLAGS, _CS_POSIX_V6_ILP32_OFF32_LIBS, _CS_POSIX_V6_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V6_ILP32_OFFBIG_LIBS, _CS_POSIX_V6_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V6_LP64_OFF64_CFLAGS, _CS_POSIX_V6_LP64_OFF64_LDFLAGS, _CS_POSIX_V6_LP64_OFF64_LIBS, _CS_POSIX_V6_LP64_OFF64_LINTFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V6_LPBIG_OFFBIG_LIBS, _CS_POSIX_V6_LPBIG_OFFBIG_LINTFLAGS, _CS_POSIX_V7_ILP32_OFF32_CFLAGS, _CS_POSIX_V7_ILP32_OFF32_LDFLAGS, _CS_POSIX_V7_ILP32_OFF32_LIBS, _CS_POSIX_V7_ILP32_OFF32_LINTFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_CFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LDFLAGS, _CS_POSIX_V7_ILP32_OFFBIG_LIBS, _CS_POSIX_V7_ILP32_OFFBIG_LINTFLAGS, _CS_POSIX_V7_LP64_OFF64_CFLAGS, _CS_POSIX_V7_LP64_OFF64_LDFLAGS, _CS_POSIX_V7_LP64_OFF64_LIBS, _CS_POSIX_V7_LP64_OFF64_LINTFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_CFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LDFLAGS, _CS_POSIX_V7_LPBIG_OFFBIG_LIBS, _CS_POSIX_V7_LPBIG_OFFBIG_LINTFLAGS, _CS_V6_ENV, _CS_V7_ENV }; # 607 "/usr/include/unistd.h" 2 3 extern long int pathconf (__const char *__path, int __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern long int fpathconf (int __fd, int __name) __attribute__ ((__nothrow__)); extern long int sysconf (int __name) __attribute__ ((__nothrow__)); extern size_t confstr (int __name, char *__buf, size_t __len) __attribute__ ((__nothrow__)); extern __pid_t getpid (void) __attribute__ ((__nothrow__)); extern __pid_t getppid (void) __attribute__ ((__nothrow__)); extern __pid_t getpgrp (void) __attribute__ ((__nothrow__)); # 641 "/usr/include/unistd.h" 3 extern __pid_t __getpgid (__pid_t __pid) __attribute__ ((__nothrow__)); extern __pid_t getpgid (__pid_t __pid) __attribute__ ((__nothrow__)); extern int setpgid (__pid_t __pid, __pid_t __pgid) __attribute__ ((__nothrow__)); extern int setpgrp (void) __attribute__ ((__nothrow__)); # 682 "/usr/include/unistd.h" 3 extern __pid_t setsid (void) __attribute__ ((__nothrow__)); extern __pid_t getsid (__pid_t __pid) __attribute__ ((__nothrow__)); extern __uid_t getuid (void) __attribute__ ((__nothrow__)); extern __uid_t geteuid (void) __attribute__ ((__nothrow__)); extern __gid_t getgid (void) __attribute__ ((__nothrow__)); extern __gid_t getegid (void) __attribute__ ((__nothrow__)); extern int getgroups (int __size, __gid_t __list[]) __attribute__ ((__nothrow__)) ; extern int setuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setreuid (__uid_t __ruid, __uid_t __euid) __attribute__ ((__nothrow__)); extern int seteuid (__uid_t __uid) __attribute__ ((__nothrow__)); extern int setgid (__gid_t __gid) __attribute__ ((__nothrow__)); extern int setregid (__gid_t __rgid, __gid_t __egid) __attribute__ ((__nothrow__)); extern int setegid (__gid_t __gid) __attribute__ ((__nothrow__)); # 770 "/usr/include/unistd.h" 3 extern __pid_t fork (void) __attribute__ ((__nothrow__)); extern __pid_t vfork (void) __attribute__ ((__nothrow__)); extern char *ttyname (int __fd) __attribute__ ((__nothrow__)); extern int ttyname_r (int __fd, char *__buf, size_t __buflen) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))) ; extern int isatty (int __fd) __attribute__ ((__nothrow__)); extern int ttyslot (void) __attribute__ ((__nothrow__)); extern int link (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int linkat (int __fromfd, __const char *__from, int __tofd, __const char *__to, int __flags) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 4))) ; extern int symlink (__const char *__from, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern ssize_t readlink (__const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 2))) ; extern int symlinkat (__const char *__from, int __tofd, __const char *__to) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1, 3))) ; extern ssize_t readlinkat (int __fd, __const char *__restrict __path, char *__restrict __buf, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2, 3))) ; extern int unlink (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int unlinkat (int __fd, __const char *__name, int __flag) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); extern int rmdir (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern __pid_t tcgetpgrp (int __fd) __attribute__ ((__nothrow__)); extern int tcsetpgrp (int __fd, __pid_t __pgrp_id) __attribute__ ((__nothrow__)); extern char *getlogin (void); extern int getlogin_r (char *__name, size_t __name_len) __attribute__ ((__nonnull__ (1))); extern int setlogin (__const char *__name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); # 1 "/usr/include/getopt.h" 1 3 # 48 "/usr/include/getopt.h" 3 extern char *optarg; extern int optind; extern int opterr; extern int optopt; # 122 "/usr/include/getopt.h" 3 extern int getopt (int ___argc, char *const *___argv, const char *__shortopts) __attribute__ ((__nothrow__)); # 173 "/usr/include/getopt.h" 3 # 185 "/usr/include/getopt.h" 3 # 891 "/usr/include/unistd.h" 2 3 extern int gethostname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int sethostname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int sethostid (long int __id) __attribute__ ((__nothrow__)) ; extern int getdomainname (char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int setdomainname (__const char *__name, size_t __len) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int vhangup (void) __attribute__ ((__nothrow__)); extern int revoke (__const char *__file) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern int profil (unsigned short int *__sample_buffer, size_t __size, size_t __offset, unsigned int __scale) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern int acct (__const char *__name) __attribute__ ((__nothrow__)); extern char *getusershell (void) __attribute__ ((__nothrow__)); extern void endusershell (void) __attribute__ ((__nothrow__)); extern void setusershell (void) __attribute__ ((__nothrow__)); extern int daemon (int __nochdir, int __noclose) __attribute__ ((__nothrow__)) ; extern int chroot (__const char *__path) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; extern char *getpass (__const char *__prompt) __attribute__ ((__nonnull__ (1))); extern int fsync (int __fd); extern long int gethostid (void); extern void sync (void) __attribute__ ((__nothrow__)); extern int getpagesize (void) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern int getdtablesize (void) __attribute__ ((__nothrow__)); extern int truncate (__const char *__file, __off_t __length) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))) ; # 1022 "/usr/include/unistd.h" 3 extern int ftruncate (int __fd, __off_t __length) __attribute__ ((__nothrow__)) ; # 1038 "/usr/include/unistd.h" 3 extern int brk (void *__addr) __attribute__ ((__nothrow__)) ; extern void *sbrk (intptr_t __delta) __attribute__ ((__nothrow__)); extern long int syscall (long int __sysno, ...) __attribute__ ((__nothrow__)); extern int lockf (int __fd, int __cmd, __off_t __len) ; # 1104 "/usr/include/unistd.h" 3 # 1118 "/usr/include/unistd.h" 3 extern int fdatasync (int __fildes); # 1145 "/usr/include/unistd.h" 3 extern char *ctermid (char *__s) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 156 "/usr/include/stdint.h" 3 # 205 "/usr/include/stdint.h" 3 # 215 "/usr/include/stdint.h" 3 # 226 "/usr/include/stdint.h" 3 # 238 "/usr/include/stdint.h" 3 # 259 "/usr/include/stdint.h" 3 # 298 "/usr/include/stdint.h" 3 # 308 "/usr/include/stdint.h" 3 # 317 "/usr/include/stdint.h" 3 # 25 "/usr/include/netinet/in.h" 2 3 # 1 "/usr/include/sys/socket.h" 1 3 # 1 "/usr/include/sys/uio.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 # 200 "/usr/include/sys/types.h" 3 typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 25 "/usr/include/sys/uio.h" 2 3 # 1 "/usr/include/bits/uio.h" 1 3 struct iovec { void *iov_base; size_t iov_len; }; # 30 "/usr/include/sys/uio.h" 2 3 extern ssize_t readv (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t writev (int __fd, __const struct iovec *__iovec, int __count) ; extern ssize_t preadv (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; extern ssize_t pwritev (int __fd, __const struct iovec *__iovec, int __count, __off_t __offset) ; # 93 "/usr/include/sys/uio.h" 3 # 120 "/usr/include/sys/uio.h" 3 # 29 "/usr/include/sys/socket.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sys/socket.h" 2 3 # 1 "/usr/include/bits/socket.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 30 "/usr/include/bits/socket.h" 2 3 typedef __socklen_t socklen_t; enum __socket_type { SOCK_STREAM = 1, SOCK_DGRAM = 2, SOCK_RAW = 3, SOCK_RDM = 4, SOCK_SEQPACKET = 5, SOCK_DCCP = 6, SOCK_PACKET = 10, SOCK_CLOEXEC = 02000000, SOCK_NONBLOCK = 04000 }; # 113 "/usr/include/bits/socket.h" 3 # 154 "/usr/include/bits/socket.h" 3 # 166 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/bits/sockaddr.h" 1 3 typedef unsigned short int sa_family_t; # 172 "/usr/include/bits/socket.h" 2 3 struct sockaddr { sa_family_t sa_family; char sa_data[14]; }; struct sockaddr_storage { sa_family_t ss_family; unsigned long int __ss_align; char __ss_padding[(128 - (2 * sizeof (unsigned long int)))]; }; enum { MSG_OOB = 0x01, MSG_PEEK = 0x02, MSG_DONTROUTE = 0x04, # 209 "/usr/include/bits/socket.h" 3 MSG_CTRUNC = 0x08, MSG_PROXY = 0x10, MSG_TRUNC = 0x20, MSG_DONTWAIT = 0x40, MSG_EOR = 0x80, MSG_WAITALL = 0x100, MSG_FIN = 0x200, MSG_SYN = 0x400, MSG_CONFIRM = 0x800, MSG_RST = 0x1000, MSG_ERRQUEUE = 0x2000, MSG_NOSIGNAL = 0x4000, MSG_MORE = 0x8000, MSG_WAITFORONE = 0x10000, MSG_CMSG_CLOEXEC = 0x40000000 }; struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; size_t msg_iovlen; void *msg_control; size_t msg_controllen; int msg_flags; }; # 272 "/usr/include/bits/socket.h" 3 struct cmsghdr { size_t cmsg_len; int cmsg_level; int cmsg_type; __extension__ unsigned char __cmsg_data []; }; # 303 "/usr/include/bits/socket.h" 3 extern struct cmsghdr *__cmsg_nxthdr (struct msghdr *__mhdr, struct cmsghdr *__cmsg) __attribute__ ((__nothrow__)); # 328 "/usr/include/bits/socket.h" 3 enum { SCM_RIGHTS = 0x01 }; # 350 "/usr/include/bits/socket.h" 3 # 375 "/usr/include/bits/socket.h" 3 # 1 "/usr/include/asm/socket.h" 1 3 # 1 "/usr/include/asm-generic/socket.h" 1 3 # 1 "/usr/include/asm/sockios.h" 1 3 # 1 "/usr/include/asm-generic/sockios.h" 1 3 # 12 "/usr/include/asm-generic/sockios.h" 3 # 2 "/usr/include/asm/sockios.h" 2 3 # 5 "/usr/include/asm-generic/socket.h" 2 3 # 25 "/usr/include/asm-generic/socket.h" 3 # 35 "/usr/include/asm-generic/socket.h" 3 # 2 "/usr/include/asm/socket.h" 2 3 # 378 "/usr/include/bits/socket.h" 2 3 # 409 "/usr/include/bits/socket.h" 3 struct linger { int l_onoff; int l_linger; }; extern int recvmmsg (int __fd, struct mmsghdr *__vmessages, unsigned int __vlen, int __flags, __const struct timespec *__tmo); # 41 "/usr/include/sys/socket.h" 2 3 struct osockaddr { unsigned short int sa_family; unsigned char sa_data[14]; }; enum { SHUT_RD = 0, SHUT_WR, SHUT_RDWR }; # 100 "/usr/include/sys/socket.h" 3 extern int socket (int __domain, int __type, int __protocol) __attribute__ ((__nothrow__)); extern int socketpair (int __domain, int __type, int __protocol, int __fds[2]) __attribute__ ((__nothrow__)); extern int bind (int __fd, __const struct sockaddr * __addr, socklen_t __len) __attribute__ ((__nothrow__)); extern int getsockname (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern int connect (int __fd, __const struct sockaddr * __addr, socklen_t __len); extern int getpeername (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __len) __attribute__ ((__nothrow__)); extern ssize_t send (int __fd, __const void *__buf, size_t __n, int __flags); extern ssize_t recv (int __fd, void *__buf, size_t __n, int __flags); extern ssize_t sendto (int __fd, __const void *__buf, size_t __n, int __flags, __const struct sockaddr * __addr, socklen_t __addr_len); extern ssize_t recvfrom (int __fd, void *__restrict __buf, size_t __n, int __flags, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); extern ssize_t sendmsg (int __fd, __const struct msghdr *__message, int __flags); extern ssize_t recvmsg (int __fd, struct msghdr *__message, int __flags); extern int getsockopt (int __fd, int __level, int __optname, void *__restrict __optval, socklen_t *__restrict __optlen) __attribute__ ((__nothrow__)); extern int setsockopt (int __fd, int __level, int __optname, __const void *__optval, socklen_t __optlen) __attribute__ ((__nothrow__)); extern int listen (int __fd, int __n) __attribute__ ((__nothrow__)); extern int accept (int __fd, struct sockaddr *__restrict __addr, socklen_t *__restrict __addr_len); # 225 "/usr/include/sys/socket.h" 3 extern int shutdown (int __fd, int __how) __attribute__ ((__nothrow__)); extern int sockatmark (int __fd) __attribute__ ((__nothrow__)); extern int isfdtype (int __fd, int __fdtype) __attribute__ ((__nothrow__)); # 26 "/usr/include/netinet/in.h" 2 3 enum { IPPROTO_IP = 0, IPPROTO_HOPOPTS = 0, IPPROTO_ICMP = 1, IPPROTO_IGMP = 2, IPPROTO_IPIP = 4, IPPROTO_TCP = 6, IPPROTO_EGP = 8, IPPROTO_PUP = 12, IPPROTO_UDP = 17, IPPROTO_IDP = 22, IPPROTO_TP = 29, IPPROTO_DCCP = 33, IPPROTO_IPV6 = 41, IPPROTO_ROUTING = 43, IPPROTO_FRAGMENT = 44, IPPROTO_RSVP = 46, IPPROTO_GRE = 47, IPPROTO_ESP = 50, IPPROTO_AH = 51, IPPROTO_ICMPV6 = 58, IPPROTO_NONE = 59, IPPROTO_DSTOPTS = 60, IPPROTO_MTP = 92, IPPROTO_ENCAP = 98, IPPROTO_PIM = 103, IPPROTO_COMP = 108, IPPROTO_SCTP = 132, IPPROTO_UDPLITE = 136, IPPROTO_RAW = 255, IPPROTO_MAX }; typedef uint16_t in_port_t; enum { IPPORT_ECHO = 7, IPPORT_DISCARD = 9, IPPORT_SYSTAT = 11, IPPORT_DAYTIME = 13, IPPORT_NETSTAT = 15, IPPORT_FTP = 21, IPPORT_TELNET = 23, IPPORT_SMTP = 25, IPPORT_TIMESERVER = 37, IPPORT_NAMESERVER = 42, IPPORT_WHOIS = 43, IPPORT_MTP = 57, IPPORT_TFTP = 69, IPPORT_RJE = 77, IPPORT_FINGER = 79, IPPORT_TTYLINK = 87, IPPORT_SUPDUP = 95, IPPORT_EXECSERVER = 512, IPPORT_LOGINSERVER = 513, IPPORT_CMDSERVER = 514, IPPORT_EFSSERVER = 520, IPPORT_BIFFUDP = 512, IPPORT_WHOSERVER = 513, IPPORT_ROUTESERVER = 520, IPPORT_RESERVED = 1024, IPPORT_USERRESERVED = 5000 }; typedef uint32_t in_addr_t; struct in_addr { in_addr_t s_addr; }; struct in6_addr { union { uint8_t __u6_addr8[16]; uint16_t __u6_addr16[8]; uint32_t __u6_addr32[4]; } __in6_u; }; extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; struct sockaddr_in { sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; unsigned char sin_zero[sizeof (struct sockaddr) - (sizeof (unsigned short int)) - sizeof (in_port_t) - sizeof (struct in_addr)]; }; struct sockaddr_in6 { sa_family_t sin6_family; in_port_t sin6_port; uint32_t sin6_flowinfo; struct in6_addr sin6_addr; uint32_t sin6_scope_id; }; struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_interface; struct in_addr imr_sourceaddr; }; struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; struct ip_msfilter { struct in_addr imsf_multiaddr; struct in_addr imsf_interface; uint32_t imsf_fmode; uint32_t imsf_numsrc; struct in_addr imsf_slist[1]; }; struct group_filter { uint32_t gf_interface; struct sockaddr_storage gf_group; uint32_t gf_fmode; uint32_t gf_numsrc; struct sockaddr_storage gf_slist[1]; }; # 1 "/usr/include/bits/in.h" 1 3 # 54 "/usr/include/bits/in.h" 3 # 74 "/usr/include/bits/in.h" 3 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; struct in_pktinfo { int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 133 "/usr/include/bits/in.h" 3 # 153 "/usr/include/bits/in.h" 3 # 165 "/usr/include/bits/in.h" 3 # 357 "/usr/include/netinet/in.h" 2 3 extern uint32_t ntohl (uint32_t __netlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t ntohs (uint16_t __netshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint32_t htonl (uint32_t __hostlong) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); extern uint16_t htons (uint16_t __hostshort) __attribute__ ((__nothrow__)) __attribute__ ((__const__)); # 1 "/usr/include/bits/byteswap.h" 1 3 # 377 "/usr/include/netinet/in.h" 2 3 # 398 "/usr/include/netinet/in.h" 3 extern int bindresvport (int __sockfd, struct sockaddr_in *__sock_in) __attribute__ ((__nothrow__)); extern int bindresvport6 (int __sockfd, struct sockaddr_in6 *__sock_in) __attribute__ ((__nothrow__)); # 564 "/usr/include/netinet/in.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_LINESIZE); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "64" Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val = sysconf(_SC_LEVEL1_DCACHE_ASSOC); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "8" ================================================================================ TEST check_siginfo_t from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.types Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found Defined "HAVE___INT64" to "1" ================================================================================ TEST checkSizeTypes from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.types/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.types/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 59 "/usr/include/sys/types.h" 3 typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 97 "/usr/include/sys/types.h" 3 typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 # 145 "/usr/include/sys/types.h" 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef __suseconds_t suseconds_t; typedef long int __fd_mask; typedef struct { __fd_mask __fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) __attribute__ ((__nothrow__)); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) __attribute__ ((__nothrow__)); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c(25): warning #592: variable "x" is used before its value is set if (x[0]); ^ /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c(30): warning #592: variable "t" is used before its value is set *t++ = 0; ^ /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c(46): warning #592: variable "b" is used before its value is set struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c(11): error: identifier "not" is undefined not big endian ^ /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c(11): error: expected a ";" not big endian ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/glade/p/work/fandek/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/glade/p/work/fandek/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lfpe Popping language C ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lsocket -lnsl -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lsocket Popping language C ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lfpe -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lfpe Popping language C ================================================================================ TEST checkMath from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Compression functions are linked in by default ================================================================================ TEST checkRealtime from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C realtime functions are linked in by default ================================================================================ TEST checkDynamic from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/dlfcn.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/dlfcn.h" 2 3 # 1 "/usr/include/bits/dlfcn.h" 1 3 # 29 "/usr/include/dlfcn.h" 2 3 # 51 "/usr/include/dlfcn.h" 3 extern void *dlopen (__const char *__file, int __mode) __attribute__ ((__nothrow__)); extern int dlclose (void *__handle) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (1))); extern void *dlsym (void *__restrict __handle, __const char *__restrict __name) __attribute__ ((__nothrow__)) __attribute__ ((__nonnull__ (2))); # 79 "/usr/include/dlfcn.h" 3 extern char *dlerror (void) __attribute__ ((__nothrow__)); # 187 "/usr/include/dlfcn.h" 3 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/glade/p/work/fandek/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Defined "USE_DEBUG" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_bgl_perfctr_void': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `bgl_perfctr_void' Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_ADIOI_BGL_Open': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `ADIOI_BGL_Open' Popping language C *********BGL/IBM test failure Defined "USE_BACKWARD_LOOP" to "1" Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/glade/p/work/fandek/petsc/config/PETSc/options/libraryOptions.py:87) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:87) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureCPURelax from config.atomics(/glade/p/work/fandek/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.atomics Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/glade/p/work/fandek/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.functions Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_SYSINFO" to "1" Checking for header: linux/kernel.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/linux/kernel.h" 1 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LINUX_KERNEL_H" to "1" Checking for header: sys/sysinfo.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/usr/include/sys/sysinfo.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/sysinfo.h" 2 3 # 1 "/usr/include/linux/kernel.h" 1 3 struct sysinfo { long uptime; unsigned long loads[3]; unsigned long totalram; unsigned long freeram; unsigned long sharedram; unsigned long bufferram; unsigned long totalswap; unsigned long freeswap; unsigned short procs; unsigned short pad; unsigned long totalhigh; unsigned long freehigh; unsigned int mem_unit; char _f[20-2*sizeof(long)-sizeof(int)]; }; struct module; void mark_hardware_unsupported(const char *msg); void mark_tech_preview(const char *msg, struct module *mod); # 26 "/usr/include/sys/sysinfo.h" 2 3 extern int sysinfo (struct sysinfo *__info) __attribute__ ((__nothrow__)); extern int get_nprocs_conf (void) __attribute__ ((__nothrow__)); extern int get_nprocs (void) __attribute__ ((__nothrow__)); extern long int get_phys_pages (void) __attribute__ ((__nothrow__)); extern long int get_avphys_pages (void) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSINFO_H" to "1" Checking for header: sys/systeminfo.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sys/systeminfo.h" #include ^: Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(13): catastrophic error: #error directive: "Cannot check sysinfo without special headers" # error "Cannot check sysinfo without special headers" ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #ifdef HAVE_LINUX_KERNEL_H # include # include # ifdef HAVE_SYS_SYSINFO_H # include # endif #elif defined(HAVE_SYS_SYSTEMINFO_H) # include #else # error "Cannot check sysinfo without special headers" #endif int main() { char buf[10]; long count=10; sysinfo(1, buf, count); ; return 0; } Compile failed inside link ================================================================================ TEST checkVPrintf from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_VPRINTF" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(8): warning #267: the format string requires additional arguments vprintf( "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl ================================================================================ TEST checkVFPrintf from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_VFPRINTF" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(8): warning #267: the format string requires additional arguments vfprintf(stdout, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { _vsnprintf(0,0,0,0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:6: undefined reference to `_vsnprintf' Checking for functions [vsnprintf] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(8): warning #267: the format string requires additional arguments vsnprintf(str,5, "%d", Argp ); ^ Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl ================================================================================ TEST checkNanosleep from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:206) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:206) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:182) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:182) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:192) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(6): warning #592: variable "p" is used before its value is set int ierr; void *p; ierr = free(p); return 0; ^ /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c(6): error: a value of type "void" cannot be assigned to an entity of type "int" int ierr; void *p; ierr = free(p); return 0; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:198) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:198) Checks whether the variable argument list functionality is working Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/glade/p/work/fandek/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname stricmp] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:118: warning: the `getwd' function is dangerous and should not be used. /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x1e): undefined reference to `_sleep' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x50): undefined reference to `_getcwd' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x6e): undefined reference to `_lseek' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x82): undefined reference to `_access' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0xd2): undefined reference to `_snprintf' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x104): undefined reference to `sbreak' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x14a): undefined reference to `_set_output_format' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x154): undefined reference to `PXFGETARG' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x1cc): undefined reference to `sysctlbyname' /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:(.text+0x1d6): undefined reference to `stricmp' Checking for functions [rand getdomainname realpath dlsym bzero uname usleep dlclose gethostname clock get_nprocs dlerror mkstemp fork getpagesize] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_GET_NPROCS" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [memalign sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MEMALIGN" to "1" Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Checking for functions [_sleep] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_sleep' Checking for functions [snprintf] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_getcwd' Checking for functions [getwd] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: warning: the `getwd' function is dangerous and should not be used. Defined "HAVE_GETWD" to "1" Checking for functions [_lseek] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_lseek' Checking for functions [sleep] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_access' Checking for functions [lseek] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [access] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_snprintf' Checking for functions [sbreak] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `sbreak' Checking for functions [getcwd] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `_set_output_format' Checking for functions [PXFGETARG] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `PXFGETARG' Checking for functions [sysctlbyname] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `sysctlbyname' Checking for functions [stricmp] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o: In function `main': /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c:24: undefined reference to `stricmp' ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage Defined "USE_PROC_FOR_SIZE" to "1" Using /proc for PetscMemoryGetCurrentUsage() ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language FC Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Popping language FC Pushing language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_get_command_argument_': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `get_command_argument_' Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Defined "HAVE_GETARG" to "1" Checking for functions [ipxfargc_] Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.functions/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm Defined "HAVE_IPXFARGC_" to "1" Defined "HAVE_PXFGETARG_NEW" to "1" Popping language C ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c(4): catastrophic error: cannot open source file "sysctl.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } Defined "_GNU_SOURCE" to "1" ================================================================================ TEST configureMissingDefines from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #if !defined(_GNU_SOURCE) #define _GNU_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/glade/p/work/fandek/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "sigfpe.h" #include ^: Checking for header: fpxcp.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "fpxcp.h" #include ^: Checking for header: floatingpoint.h Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.c(3): error #2379: cannot open source file "floatingpoint.h" #include ^: ================================================================================ TEST configureMkdir from config.programs(/glade/p/work/fandek/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mkdir...not found Checking for program /glade/u/home/fandek/bin/mkdir...not found Checking for program ./mkdir...not found Checking for program /usr/lib64/qt-3.3/bin/mkdir...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mkdir...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mkdir...not found Checking for program /glade/apps/opt/usr/bin/mkdir...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/mkdir...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/glade/p/work/fandek/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/autoreconf...not found Checking for program /glade/u/home/fandek/bin/autoreconf...not found Checking for program ./autoreconf...not found Checking for program /usr/lib64/qt-3.3/bin/autoreconf...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/autoreconf...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/autoreconf...not found Checking for program /glade/apps/opt/usr/bin/autoreconf...found All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.programs Executing: cd /glade/scratch/fandek/petsc-aqKo9_/config.programs/autoconfdir&&/glade/apps/opt/usr/bin/autoreconf autoreconf test successful! ================================================================================ TEST configurePrograms from config.programs(/glade/p/work/fandek/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/sh...not found Checking for program /glade/u/home/fandek/bin/sh...not found Checking for program ./sh...not found Checking for program /usr/lib64/qt-3.3/bin/sh...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/sh...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/sh...not found Checking for program /glade/apps/opt/usr/bin/sh...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/sh...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/sed...not found Checking for program /glade/u/home/fandek/bin/sed...not found Checking for program ./sed...not found Checking for program /usr/lib64/qt-3.3/bin/sed...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/sed...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/sed...not found Checking for program /glade/apps/opt/usr/bin/sed...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/sed...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/sed...not found Checking for program /usr/bin/sed...not found Checking for program /bin/sed...found Defined make macro "SED" to "/bin/sed" Executing: /bin/sed -i s/sed/sd/g "/glade/scratch/fandek/petsc-aqKo9_/config.programs/sed1" Adding SEDINPLACE cmd: /bin/sed -i Defined make macro "SEDINPLACE" to "/bin/sed -i" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mv...not found Checking for program /glade/u/home/fandek/bin/mv...not found Checking for program ./mv...not found Checking for program /usr/lib64/qt-3.3/bin/mv...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mv...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mv...not found Checking for program /glade/apps/opt/usr/bin/mv...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/mv...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cp...not found Checking for program /glade/u/home/fandek/bin/cp...not found Checking for program ./cp...not found Checking for program /usr/lib64/qt-3.3/bin/cp...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/cp...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/cp...not found Checking for program /glade/apps/opt/usr/bin/cp...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/cp...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/grep...not found Checking for program /glade/u/home/fandek/bin/grep...not found Checking for program ./grep...not found Checking for program /usr/lib64/qt-3.3/bin/grep...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/grep...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/grep...not found Checking for program /glade/apps/opt/usr/bin/grep...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/grep...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/grep...not found Checking for program /usr/bin/grep...not found Checking for program /bin/grep...found Defined make macro "GREP" to "/bin/grep" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/rm...not found Checking for program /glade/u/home/fandek/bin/rm...not found Checking for program ./rm...not found Checking for program /usr/lib64/qt-3.3/bin/rm...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/rm...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/rm...not found Checking for program /glade/apps/opt/usr/bin/rm...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/rm...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/diff...not found Checking for program /glade/u/home/fandek/bin/diff...not found Checking for program ./diff...not found Checking for program /usr/lib64/qt-3.3/bin/diff...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/diff...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/diff...not found Checking for program /glade/apps/opt/usr/bin/diff...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/diff...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/glade/scratch/fandek/petsc-aqKo9_/config.programs/diff1" "/glade/scratch/fandek/petsc-aqKo9_/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /glade/u/home/fandek/ps...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/ps...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/gzip...not found Checking for program /glade/u/home/fandek/bin/gzip...not found Checking for program ./gzip...not found Checking for program /usr/lib64/qt-3.3/bin/gzip...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/gzip...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/gzip...not found Checking for program /glade/apps/opt/usr/bin/gzip...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/gzip...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/make.py:66) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:66) Check for user specified make - or gmake, make Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/gmake...not found Checking for program /glade/u/home/fandek/bin/gmake...not found Checking for program ./gmake...not found Checking for program /usr/lib64/qt-3.3/bin/gmake...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/gmake...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/gmake...not found Checking for program /glade/apps/opt/usr/bin/gmake...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/gmake...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/gmake...not found Checking for program /usr/bin/gmake...found Defined make macro "MAKE" to "/usr/bin/gmake" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/make.py:84) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:84) Check for GNU make Executing: /usr/bin/gmake --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for x86_64-redhat-linux-gnu Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/make.py:119) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:119) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 32 cores: using make_np = 24 Defined make macro "MAKE_NP" to "24" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/gmake --print-directory" Defined make macro "OMAKE" to "/usr/bin/gmake --no-print-directory" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:476) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:476) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in Compiler specific search MPI: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for headers Compiler specific search MPI: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 extern "C" { # 28 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 35 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 44 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 60 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Datatype; # 101 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_char = ((MPI_Datatype)0x4c000101); static const MPI_Datatype mpich_mpi_signed_char = ((MPI_Datatype)0x4c000118); static const MPI_Datatype mpich_mpi_unsigned_char = ((MPI_Datatype)0x4c000102); static const MPI_Datatype mpich_mpi_wchar = ((MPI_Datatype)0x4c00040e); static const MPI_Datatype mpich_mpi_short = ((MPI_Datatype)0x4c000203); static const MPI_Datatype mpich_mpi_unsigned_short = ((MPI_Datatype)0x4c000204); static const MPI_Datatype mpich_mpi_int = ((MPI_Datatype)0x4c000405); static const MPI_Datatype mpich_mpi_unsigned = ((MPI_Datatype)0x4c000406); static const MPI_Datatype mpich_mpi_long = ((MPI_Datatype)0x4c000807); static const MPI_Datatype mpich_mpi_unsigned_long = ((MPI_Datatype)0x4c000808); static const MPI_Datatype mpich_mpi_float = ((MPI_Datatype)0x4c00040a); static const MPI_Datatype mpich_mpi_double = ((MPI_Datatype)0x4c00080b); static const MPI_Datatype mpich_mpi_long_double = ((MPI_Datatype)0x4c00100c); static const MPI_Datatype mpich_mpi_long_long_int = ((MPI_Datatype)0x4c000809); static const MPI_Datatype mpich_mpi_unsigned_long_long = ((MPI_Datatype)0x4c000819); # 137 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" struct mpich_struct_mpi_float_int { float f; int i; }; struct mpich_struct_mpi_double_int { double d; int i; }; struct mpich_struct_mpi_long_int { long l; int i; }; struct mpich_struct_mpi_short_int { short s; int i; }; struct mpich_struct_mpi_2int { int i1; int i2; }; struct mpich_struct_mpi_long_double_int { long double ld; int i; }; static const MPI_Datatype mpich_mpi_float_int = ((MPI_Datatype)0x8c000000); static const MPI_Datatype mpich_mpi_double_int = ((MPI_Datatype)0x8c000001); static const MPI_Datatype mpich_mpi_long_int = ((MPI_Datatype)0x8c000002); static const MPI_Datatype mpich_mpi_short_int = ((MPI_Datatype)0x8c000003); static const MPI_Datatype mpich_mpi_2int = ((MPI_Datatype)0x4c000816); static const MPI_Datatype mpich_mpi_long_double_int = ((MPI_Datatype)0x8c000004); # 160 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 174 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 187 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 197 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_int8_t = ((MPI_Datatype)0x4c000137); static const MPI_Datatype mpich_mpi_int16_t = ((MPI_Datatype)0x4c000238); static const MPI_Datatype mpich_mpi_int32_t = ((MPI_Datatype)0x4c000439); static const MPI_Datatype mpich_mpi_int64_t = ((MPI_Datatype)0x4c00083a); static const MPI_Datatype mpich_mpi_uint8_t = ((MPI_Datatype)0x4c00013b); static const MPI_Datatype mpich_mpi_uint16_t = ((MPI_Datatype)0x4c00023c); static const MPI_Datatype mpich_mpi_uint32_t = ((MPI_Datatype)0x4c00043d); static const MPI_Datatype mpich_mpi_uint64_t = ((MPI_Datatype)0x4c00083e); static const MPI_Datatype mpich_mpi_c_bool = ((MPI_Datatype)0x4c00013f); static const MPI_Datatype mpich_mpi_c_float_complex = ((MPI_Datatype)0x4c000840); static const MPI_Datatype mpich_mpi_c_double_complex = ((MPI_Datatype)0x4c001041); static const MPI_Datatype mpich_mpi_c_long_double_complex = ((MPI_Datatype)0x4c002042); typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef int MPI_File; typedef int MPI_Op; # 264 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 285 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 303 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_datatype_null = ((MPI_Datatype)0x0c000000); typedef enum MPIR_Win_flavor_e { MPIX_WIN_FLAVOR_CREATE = 1, MPIX_WIN_FLAVOR_ALLOCATE = 2, MPIX_WIN_FLAVOR_DYNAMIC = 3, MPIX_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model_e { MPIX_WIN_SEPARATE = 1, MPIX_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; # 400 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Request; typedef int MPIX_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPIX_COMBINER_HINDEXED_BLOCK = 11, MPI_COMBINER_STRUCT_INTEGER = 12, MPI_COMBINER_STRUCT = 13, MPI_COMBINER_SUBARRAY = 14, MPI_COMBINER_DARRAY = 15, MPI_COMBINER_F90_REAL = 16, MPI_COMBINER_F90_COMPLEX = 17, MPI_COMBINER_F90_INTEGER = 18, MPI_COMBINER_RESIZED = 19 }; typedef int MPI_Info; # 491 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; static const MPI_Datatype mpich_mpi_aint = ((MPI_Datatype)0x4c000843); typedef long long MPI_Offset; static const MPI_Datatype mpich_mpi_offset = ((MPI_Datatype)0x4c000844); typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum; typedef struct MPIR_T_enum * MPIX_T_enum; struct MPIR_T_cvar_handle; typedef struct MPIR_T_cvar_handle * MPIX_T_cvar_handle; struct MPIR_T_pvar_handle; typedef struct MPIR_T_pvar_handle * MPIX_T_pvar_handle; struct MPIR_T_pvar_session; typedef struct MPIR_T_pvar_session * MPIX_T_pvar_session; extern struct MPIR_T_pvar_handle * const MPIX_T_PVAR_ALL_HANDLES; enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPIX_T_VERBOSITY_USER_BASIC = 221, MPIX_T_VERBOSITY_USER_DETAIL, MPIX_T_VERBOSITY_USER_ALL, MPIX_T_VERBOSITY_TUNER_BASIC, MPIX_T_VERBOSITY_TUNER_DETAIL, MPIX_T_VERBOSITY_TUNER_ALL, MPIX_T_VERBOSITY_MPIDEV_BASIC, MPIX_T_VERBOSITY_MPIDEV_DETAIL, MPIX_T_VERBOSITY_MPIDEV_ALL }; enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPIX_T_BIND_NO_OBJECT = 9700, MPIX_T_BIND_MPI_COMM, MPIX_T_BIND_MPI_DATATYPE, MPIX_T_BIND_MPI_ERRHANDLER, MPIX_T_BIND_MPI_FILE, MPIX_T_BIND_MPI_GROUP, MPIX_T_BIND_MPI_OP, MPIX_T_BIND_MPI_REQUEST, MPIX_T_BIND_MPI_WIN, MPIX_T_BIND_MPI_MESSAGE, MPIX_T_BIND_MPI_INFO }; enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPIX_T_SCOPE_READONLY = 60439, MPIX_T_SCOPE_LOCAL, MPIX_T_SCOPE_GROUP, MPIX_T_SCOPE_GROUP_EQ, MPIX_T_SCOPE_ALL, MPIX_T_SCOPE_ALL_EQ }; enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIX_T_PVAR_CLASS_STATE = 240, MPIX_T_PVAR_CLASS_LEVEL, MPIX_T_PVAR_CLASS_SIZE, MPIX_T_PVAR_CLASS_PERCENTAGE, MPIX_T_PVAR_CLASS_HIGHWATERMARK, MPIX_T_PVAR_CLASS_LOWWATERMARK, MPIX_T_PVAR_CLASS_COUNTER, MPIX_T_PVAR_CLASS_AGGREGATE, MPIX_T_PVAR_CLASS_TIMER, MPIX_T_PVAR_CLASS_GENERIC }; # 646 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 666 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); # 707 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 744 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 761 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 770 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); int MPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Get_count( MPI_Status *, MPI_Datatype, int *); int MPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Buffer_attach( void*, int); int MPI_Buffer_detach( void*, int *); int MPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Wait(MPI_Request *, MPI_Status *); int MPI_Test(MPI_Request *, int *, MPI_Status *); int MPI_Request_free(MPI_Request *); int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Waitall(int, MPI_Request *, MPI_Status *); int MPI_Testall(int, MPI_Request *, int *, MPI_Status *); int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int MPI_Probe(int, int, MPI_Comm, MPI_Status *); int MPI_Cancel(MPI_Request *); int MPI_Test_cancelled( MPI_Status *, int *); int MPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Bsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Ssend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Rsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Start(MPI_Request *); int MPI_Startall(int, MPI_Request *); int MPI_Sendrecv( void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int MPI_Address( void*, MPI_Aint *); int MPI_Type_extent(MPI_Datatype, MPI_Aint *); int MPI_Type_size(MPI_Datatype, int *); int MPI_Type_lb(MPI_Datatype, MPI_Aint *); int MPI_Type_ub(MPI_Datatype, MPI_Aint *); int MPI_Type_commit(MPI_Datatype *); int MPI_Type_free(MPI_Datatype *); int MPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int MPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int MPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int MPI_Barrier(MPI_Comm ); int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int MPI_Op_create(MPI_User_function *, int, MPI_Op *); int MPI_Op_free( MPI_Op *); int MPI_Allreduce( void*, void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Group_size(MPI_Group, int *); int MPI_Group_rank(MPI_Group, int *); int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int MPI_Group_compare(MPI_Group, MPI_Group, int *); int MPI_Comm_group(MPI_Comm, MPI_Group *); int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_free(MPI_Group *); int MPI_Comm_size(MPI_Comm, int *); int MPI_Comm_rank(MPI_Comm, int *); int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int MPI_Comm_dup(MPI_Comm, MPI_Comm *); int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int MPI_Comm_free(MPI_Comm *); int MPI_Comm_test_inter(MPI_Comm, int *); int MPI_Comm_remote_size(MPI_Comm, int *); int MPI_Comm_remote_group(MPI_Comm, MPI_Group *); int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * ); int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int MPI_Keyval_free(int *); int MPI_Attr_put(MPI_Comm, int, void*); int MPI_Attr_get(MPI_Comm, int, void *, int *); int MPI_Attr_delete(MPI_Comm, int); int MPI_Topo_test(MPI_Comm, int *); int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Dims_create(int, int, int *); int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Graphdims_get(MPI_Comm, int *, int *); int MPI_Graph_get(MPI_Comm, int, int, int *, int *); int MPI_Cartdim_get(MPI_Comm, int *); int MPI_Cart_get(MPI_Comm, int, int *, int *, int *); int MPI_Cart_rank(MPI_Comm, int *, int *); int MPI_Cart_coords(MPI_Comm, int, int, int *); int MPI_Graph_neighbors_count(MPI_Comm, int, int *); int MPI_Graph_neighbors(MPI_Comm, int, int, int *); int MPI_Cart_shift(MPI_Comm, int, int, int *, int *); int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int MPI_Cart_map(MPI_Comm, int, int *, int *, int *); int MPI_Graph_map(MPI_Comm, int, int *, int *, int *); int MPI_Get_processor_name(char *, int *); int MPI_Get_version(int *, int *); int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int MPI_Errhandler_free(MPI_Errhandler *); int MPI_Error_string(int, char *, int *); int MPI_Error_class(int, int *); double MPI_Wtime(void); double MPI_Wtick(void); double PMPI_Wtime(void); double PMPI_Wtick(void); int MPI_Init(int *, char ***); int MPI_Finalize(void); int MPI_Initialized(int *); int MPI_Abort(MPI_Comm, int); int MPI_Pcontrol(const int, ...); int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * ); int MPI_Close_port( char *); int MPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_disconnect(MPI_Comm *); int MPI_Comm_get_parent(MPI_Comm *); int MPI_Comm_join(int, MPI_Comm *); int MPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int MPI_Lookup_name( char *, MPI_Info, char *); int MPI_Open_port(MPI_Info, char *); int MPI_Publish_name( char *, MPI_Info, char *); int MPI_Unpublish_name( char *, MPI_Info, char *); int MPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Win_complete(MPI_Win); int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int MPI_Win_fence(int, MPI_Win); int MPI_Win_free(MPI_Win *); int MPI_Win_get_group(MPI_Win, MPI_Group *); int MPI_Win_lock(int, int, int, MPI_Win); int MPI_Win_post(MPI_Group, int, MPI_Win); int MPI_Win_start(MPI_Group, int, MPI_Win); int MPI_Win_test(MPI_Win, int *); int MPI_Win_unlock(int, MPI_Win); int MPI_Win_wait(MPI_Win); int MPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPIX_Win_detach(MPI_Win win, const void *base); int MPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int MPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int MPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int MPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Win_lock_all(int assert, MPI_Win win); int MPIX_Win_unlock_all(MPI_Win win); int MPIX_Win_flush(int rank, MPI_Win win); int MPIX_Win_flush_all(MPI_Win win); int MPIX_Win_flush_local(int rank, MPI_Win win); int MPIX_Win_flush_local_all(MPI_Win win); int MPIX_Win_sync(MPI_Win win); int MPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int MPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Add_error_class(int *); int MPI_Add_error_code(int, int *); int MPI_Add_error_string(int, char *); int MPI_Comm_call_errhandler(MPI_Comm, int); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int MPI_Comm_delete_attr(MPI_Comm, int); int MPI_Comm_free_keyval(int *); int MPI_Comm_get_attr(MPI_Comm, int, void *, int *); int MPI_Comm_get_name(MPI_Comm, char *, int *); int MPI_Comm_set_attr(MPI_Comm, int, void *); int MPI_Comm_set_name(MPI_Comm, char *); int MPI_File_call_errhandler(MPI_File, int); int MPI_Grequest_complete(MPI_Request); int MPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int MPI_Init_thread(int *, char ***, int, int *); int MPI_Is_thread_main(int *); int MPI_Query_thread(int *); int MPI_Status_set_cancelled(MPI_Status *, int); int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int MPI_Type_delete_attr(MPI_Datatype, int); int MPI_Type_dup(MPI_Datatype, MPI_Datatype *); int MPI_Type_free_keyval(int *); int MPI_Type_get_attr(MPI_Datatype, int, void *, int *); int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int MPI_Type_get_name(MPI_Datatype, char *, int *); int MPI_Type_set_attr(MPI_Datatype, int, void *); int MPI_Type_set_name(MPI_Datatype, char *); int MPI_Type_match_size( int, int, MPI_Datatype *); int MPI_Win_call_errhandler(MPI_Win, int); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int MPI_Win_delete_attr(MPI_Win, int); int MPI_Win_free_keyval(int *); int MPI_Win_get_attr(MPI_Win, int, void *, int *); int MPI_Win_get_name(MPI_Win, char *, int *); int MPI_Win_set_attr(MPI_Win, int, void *); int MPI_Win_set_name(MPI_Win, char *); # 1113 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int MPI_File_set_errhandler(MPI_File, MPI_Errhandler); int MPI_Finalized(int *); int MPI_Free_mem(void *); int MPI_Get_address( void *, MPI_Aint *); int MPI_Info_create(MPI_Info *); int MPI_Info_delete(MPI_Info, char *); int MPI_Info_dup(MPI_Info, MPI_Info *); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info, char *, int, char *, int *); int MPI_Info_get_nkeys(MPI_Info, int *); int MPI_Info_get_nthkey(MPI_Info, int, char *); int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int MPI_Info_set(MPI_Info, char *, char *); int MPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int MPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int MPI_Request_get_status(MPI_Request, int *, MPI_Status *); int MPI_Status_c2f( MPI_Status *, MPI_Fint *); int MPI_Status_f2c( MPI_Fint *, MPI_Status *); int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int MPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int MPI_Type_create_f90_integer( int, MPI_Datatype * ); int MPI_Type_create_f90_real( int, int, MPI_Datatype * ); int MPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int MPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int MPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int MPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int MPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int MPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int MPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int MPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int MPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_T_init_thread(int required, int *provided); int MPIX_T_finalize(void); int MPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int MPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int MPIX_T_cvar_get_num(int *num_cvar); int MPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int MPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int MPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int MPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_pvar_get_num(int *num_pvar); int MPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int MPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int MPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int MPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int MPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int MPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_category_get_num(int *num_cat); int MPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int MPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int MPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int MPIX_T_category_get_categories(int cat_index, int len, int indices[]); int MPIX_T_category_changed(int *stamp); int PMPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Get_count( MPI_Status *, MPI_Datatype, int *); int PMPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Buffer_attach( void* buffer, int); int PMPI_Buffer_detach( void* buffer, int *); int PMPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPI_Test(MPI_Request *, int *, MPI_Status *); int PMPI_Request_free(MPI_Request *); int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Waitall(int, MPI_Request *, MPI_Status *); int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int PMPI_Probe(int, int, MPI_Comm, MPI_Status *); int PMPI_Cancel(MPI_Request *); int PMPI_Test_cancelled( MPI_Status *, int *); int PMPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Bsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ssend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Rsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Start(MPI_Request *); int PMPI_Startall(int, MPI_Request *); int PMPI_Sendrecv( void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int PMPI_Address( void*, MPI_Aint *); int PMPI_Type_extent(MPI_Datatype, MPI_Aint *); int PMPI_Type_size(MPI_Datatype, int *); int PMPI_Type_lb(MPI_Datatype, MPI_Aint *); int PMPI_Type_ub(MPI_Datatype, MPI_Aint *); int PMPI_Type_commit(MPI_Datatype *); int PMPI_Type_free(MPI_Datatype *); int PMPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int PMPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int PMPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int PMPI_Barrier(MPI_Comm ); int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm ); int PMPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int PMPI_Op_create(MPI_User_function *, int, MPI_Op *); int PMPI_Op_free( MPI_Op *); int PMPI_Allreduce( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Group_size(MPI_Group, int *); int PMPI_Group_rank(MPI_Group, int *); int PMPI_Group_translate_ranks(MPI_Group, int, int *, MPI_Group, int *); int PMPI_Group_compare(MPI_Group, MPI_Group, int *); int PMPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); int PMPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPI_Comm_group(MPI_Comm, MPI_Group *); int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_free(MPI_Group *); int PMPI_Comm_size(MPI_Comm, int *); int PMPI_Comm_rank(MPI_Comm, int *); int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int PMPI_Comm_dup(MPI_Comm, MPI_Comm *); int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int PMPI_Comm_free(MPI_Comm *); int PMPI_Comm_test_inter(MPI_Comm, int *); int PMPI_Comm_remote_size(MPI_Comm, int *); int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *); int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *); int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int PMPI_Keyval_free(int *); int PMPI_Attr_put(MPI_Comm, int, void*); int PMPI_Attr_get(MPI_Comm, int, void *, int *); int PMPI_Attr_delete(MPI_Comm, int); int PMPI_Topo_test(MPI_Comm, int *); int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Dims_create(int, int, int *); int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Graphdims_get(MPI_Comm, int *, int *); int PMPI_Graph_get(MPI_Comm, int, int, int *, int *); int PMPI_Cartdim_get(MPI_Comm, int *); int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *); int PMPI_Cart_rank(MPI_Comm, int *, int *); int PMPI_Cart_coords(MPI_Comm, int, int, int *); int PMPI_Graph_neighbors_count(MPI_Comm, int, int *); int PMPI_Graph_neighbors(MPI_Comm, int, int, int *); int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *); int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *); int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *); int PMPI_Get_processor_name(char *, int *); int PMPI_Get_version(int *, int *); int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int PMPI_Errhandler_free(MPI_Errhandler *); int PMPI_Error_string(int, char *, int *); int PMPI_Error_class(int, int *); int PMPI_Init(int *, char ***); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Pcontrol(const int, ...); int PMPI_Close_port( char *); int PMPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_disconnect(MPI_Comm *); int PMPI_Comm_get_parent(MPI_Comm *); int PMPI_Comm_join(int, MPI_Comm *); int PMPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int PMPI_Lookup_name( char *, MPI_Info, char *); int PMPI_Open_port(MPI_Info, char *); int PMPI_Publish_name( char *, MPI_Info, char *); int PMPI_Unpublish_name( char *, MPI_Info, char *); int PMPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Win_complete(MPI_Win); int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int PMPI_Win_fence(int, MPI_Win); int PMPI_Win_free(MPI_Win *); int PMPI_Win_get_group(MPI_Win, MPI_Group *); int PMPI_Win_lock(int, int, int, MPI_Win); int PMPI_Win_post(MPI_Group, int, MPI_Win); int PMPI_Win_start(MPI_Group, int, MPI_Win); int PMPI_Win_test(MPI_Win, int *); int PMPI_Win_unlock(int, MPI_Win); int PMPI_Win_wait(MPI_Win); int PMPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPIX_Win_detach(MPI_Win win, const void *base); int PMPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int PMPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int PMPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int PMPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Win_lock_all(int assert, MPI_Win win); int PMPIX_Win_unlock_all(MPI_Win win); int PMPIX_Win_flush(int rank, MPI_Win win); int PMPIX_Win_flush_all(MPI_Win win); int PMPIX_Win_flush_local(int rank, MPI_Win win); int PMPIX_Win_flush_local_all(MPI_Win win); int PMPIX_Win_sync(MPI_Win win); int PMPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int PMPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Add_error_class(int *); int PMPI_Add_error_code(int, int *); int PMPI_Add_error_string(int, char *); int PMPI_Comm_call_errhandler(MPI_Comm, int); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int PMPI_Comm_delete_attr(MPI_Comm, int); int PMPI_Comm_free_keyval(int *); int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); int PMPI_Comm_set_attr(MPI_Comm, int, void *); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_File_call_errhandler(MPI_File, int); int PMPI_Grequest_complete(MPI_Request); int PMPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int PMPI_Init_thread(int *, char ***, int, int *); int PMPI_Is_thread_main(int *); int PMPI_Query_thread(int *); int PMPI_Status_set_cancelled(MPI_Status *, int); int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int PMPI_Type_delete_attr(MPI_Datatype, int); int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *); int PMPI_Type_free_keyval(int *); int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *); int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int PMPI_Type_get_name(MPI_Datatype, char *, int *); int PMPI_Type_set_attr(MPI_Datatype, int, void *); int PMPI_Type_set_name(MPI_Datatype, char *); int PMPI_Type_match_size( int, int, MPI_Datatype *); int PMPI_Win_call_errhandler(MPI_Win, int); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int PMPI_Win_delete_attr(MPI_Win, int); int PMPI_Win_free_keyval(int *); int PMPI_Win_get_attr(MPI_Win, int, void *, int *); int PMPI_Win_get_name(MPI_Win, char *, int *); int PMPI_Win_set_attr(MPI_Win, int, void *); int PMPI_Win_set_name(MPI_Win, char *); int PMPI_Type_create_f90_integer( int, MPI_Datatype * ); int PMPI_Type_create_f90_real( int, int, MPI_Datatype * ); int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler); int PMPI_Finalized(int *); int PMPI_Free_mem(void *); int PMPI_Get_address( void *, MPI_Aint *); int PMPI_Info_create(MPI_Info *); int PMPI_Info_delete(MPI_Info, char *); int PMPI_Info_dup(MPI_Info, MPI_Info *); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info, char *, int, char *, int *); int PMPI_Info_get_nkeys(MPI_Info, int *); int PMPI_Info_get_nthkey(MPI_Info, int, char *); int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int PMPI_Info_set(MPI_Info, char *, char *); int PMPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int PMPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *); int PMPI_Status_c2f( MPI_Status *, MPI_Fint *); int PMPI_Status_f2c( MPI_Fint *, MPI_Status *); int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int PMPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int PMPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int PMPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int PMPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int PMPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int PMPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int PMPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int PMPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int PMPIX_T_init_thread(int required, int *provided); int PMPIX_T_finalize(void); int PMPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int PMPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int PMPIX_T_cvar_get_num(int *num_cvar); int PMPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int PMPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int PMPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int PMPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_pvar_get_num(int *num_pvar); int PMPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int PMPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int PMPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int PMPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int PMPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int PMPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_category_get_num(int *num_cat); int PMPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int PMPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int PMPIX_T_category_get_categories(int cat_index, int len, int indices[]); int PMPIX_T_category_changed(int *stamp); # 1690 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 1 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 # 14 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 2 extern "C" { # 33 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 40 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 80 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 108 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int MPI_File_close(MPI_File *); int MPI_File_delete( char *, MPI_Info); int MPI_File_set_size(MPI_File, MPI_Offset); int MPI_File_preallocate(MPI_File, MPI_Offset); int MPI_File_get_size(MPI_File, MPI_Offset *); int MPI_File_get_group(MPI_File, MPI_Group *); int MPI_File_get_amode(MPI_File, int *); int MPI_File_set_info(MPI_File, MPI_Info); int MPI_File_get_info(MPI_File, MPI_Info *); int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int MPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int MPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_seek(MPI_File, MPI_Offset, int); int MPI_File_get_position(MPI_File, MPI_Offset *); int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_seek_shared(MPI_File, MPI_Offset, int); int MPI_File_get_position_shared(MPI_File, MPI_Offset *); int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int MPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int MPI_File_set_atomicity(MPI_File, int); int MPI_File_get_atomicity(MPI_File, int *); int MPI_File_sync(MPI_File); # 258 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 271 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File MPI_File_f2c(MPI_Fint); MPI_Fint MPI_File_c2f(MPI_File); # 292 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 321 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete( char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 465 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 485 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 502 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" } # 1692 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 } # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 1 # 26 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 41 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 1 "/usr/include/stdio.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/stdio.h" 2 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/stdio.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 79 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 892 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 52 "/usr/include/_G_config.h" 3 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 74 "/usr/include/_G_config.h" 3 # 33 "/usr/include/libio.h" 2 3 # 49 "/usr/include/libio.h" 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 typedef __builtin_va_list __gnuc_va_list; # 128 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/include/libio.h" 2 3 # 73 "/usr/include/libio.h" 3 # 88 "/usr/include/libio.h" 3 # 104 "/usr/include/libio.h" 3 # 113 "/usr/include/libio.h" 3 # 139 "/usr/include/libio.h" 3 # 149 "/usr/include/libio.h" 3 # 168 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 270 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 __off64_t _offset; # 328 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 358 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 442 "/usr/include/libio.h" 3 # 456 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 489 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 546 "/usr/include/libio.h" 3 } # 76 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 87 "/usr/include/stdio.h" 3 typedef __off_t off_t; # 98 "/usr/include/stdio.h" 3 typedef __off64_t off64_t; typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 162 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) throw (); extern int rename (__const char *__old, __const char *__new) throw (); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) throw (); extern FILE *tmpfile (void) ; # 202 "/usr/include/stdio.h" 3 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; extern char *tempnam (__const char *__dir, __const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); extern int fcloseall (void); extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 extern FILE *fopen64 (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen64 (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, __const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, __const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, __const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) throw (); # 466 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 525 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; extern int fputs_unlocked (__const char *__restrict __s, FILE *__restrict __stream); extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 786 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, __const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern __const char *__const sys_errlist[]; extern int _sys_nerr; extern __const char *__const _sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, __const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 925 "/usr/include/stdio.h" 3 # 937 "/usr/include/stdio.h" 3 } # 55 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 2 enum MPIR_Dummy_seek_type { MPIR_DUMMY_SEEK_COMMA_VAL = -1 , MPIR_SEEK_SET = 0 , SEEK_SET = MPIR_SEEK_SET , MPIR_SEEK_CUR = 1 , SEEK_CUR = MPIR_SEEK_CUR , MPIR_SEEK_END = 2 , SEEK_END = MPIR_SEEK_END # 79 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" }; namespace MPI { # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" extern void MPIR_Call_world_errhand( int ); typedef MPI_Offset Offset; typedef MPI_Aint Aint; typedef MPI_Fint Fint; void MPIR_CXX_InitDatatypeNames( void ); class Comm; class Nullcomm; class Intercomm; class Intracomm; class Cartcomm; class Graphcomm; class File; extern int Detach_buffer( void *&v1 ) ; extern bool Is_initialized( void ) ; extern void Get_processor_name( char * v1, int &v2 ) ; extern void Get_error_string( int v1, char * v2, int &v3 ) ; extern void Compute_dims( int v1, int v2, int * v3 ) ; extern void Get_version( int &v1, int &v2 ) ; extern void Finalize( void ) ; extern void Pcontrol( const int v1, ... ) ; extern void Attach_buffer( void* v1, int v2 ) ; extern int Get_error_class( int v1 ) ; extern Intracomm COMM_WORLD; extern File FILE_NULL; class Exception { protected: int the_real_exception; public: inline Exception(int obj) : the_real_exception(obj) {} inline Exception(void) : the_real_exception(0) {} virtual ~Exception() {} Exception(const Exception &obj) : the_real_exception(obj.the_real_exception){} Exception& operator=(const Exception &obj) { the_real_exception = obj.the_real_exception; return *this; } bool operator== (const Exception &obj) { return (the_real_exception == obj.the_real_exception); } bool operator!= (const Exception &obj) { return (the_real_exception != obj.the_real_exception); } inline operator int*() { return &the_real_exception; } inline operator int() const { return the_real_exception; } Exception& operator=(const int& obj) { the_real_exception = obj; return *this; } protected: char the_error_message[512]; public: int Get_error_code(void) { return the_real_exception; } int Get_error_class(void) { return MPI::Get_error_class(the_real_exception); } const char *Get_error_string(void) { int len; MPI_Error_string(the_real_exception, the_error_message, &len); return the_error_message; } }; class Datatype { friend class Comm; friend class Status; friend class Intracomm; friend class Intercomm; friend class Win; friend class File; friend class Op; protected: MPI_Datatype the_real_datatype; public: inline Datatype(MPI_Datatype obj) : the_real_datatype(obj) {} inline Datatype(void) : the_real_datatype(((MPI_Datatype)0x0c000000)) {} virtual ~Datatype() {} Datatype(const Datatype &obj) : the_real_datatype(obj.the_real_datatype){} Datatype& operator=(const Datatype &obj) { the_real_datatype = obj.the_real_datatype; return *this; } bool operator== (const Datatype &obj) { return (the_real_datatype == obj.the_real_datatype); } bool operator!= (const Datatype &obj) { return (the_real_datatype != obj.the_real_datatype); } inline operator MPI_Datatype*() { return &the_real_datatype; } inline operator MPI_Datatype() const { return the_real_datatype; } Datatype& operator=(const MPI_Datatype& obj) { the_real_datatype = obj; return *this; } virtual void Commit( void ) { { int err = MPI_Type_commit( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Free( void ) { { int err = MPI_Type_free( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual Datatype Create_indexed( int v1, const int * v2, const int * v3 ) const { Datatype v5; { int err = MPI_Type_indexed( v1, (int *)v2, (int *)v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } virtual Datatype Create_contiguous( int v1 ) const { Datatype v3; { int err = MPI_Type_contiguous( v1, (MPI_Datatype) the_real_datatype, &(v3 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual Datatype Create_vector( int v1, int v2, int v3 ) const { Datatype v5; { int err = MPI_Type_vector( v1, v2, v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } static Datatype Create_struct( int v1, int v2[], MPI_Aint v3[], const Datatype v4[] ) { Datatype v5; MPI_Datatype *l4 = new MPI_Datatype[v1]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; return v2; } virtual int Get_rank( void ) const { int v2; { int err = MPI_Comm_rank( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Prequest Bsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Bsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Prequest Ssend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Ssend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Is_inter( void ) const { int v2; { int err = MPI_Comm_test_inter( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual Prequest Rsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Rsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Request Ibsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Ibsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Abort( int v2 ) const { { int err = MPI_Abort( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Comm_free( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Send_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Send_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5, Status & v7 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)&(v7 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10, Status & v12 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)&(v12 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7, Status & v9 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)&(v9 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_topology( void ) const { int v2; { int err = MPI_Topo_test( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Isend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Isend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Probe( int v1, int v2, Status & v4 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)&(v4 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Probe( int v1, int v2 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static int Compare( const Comm &v1, const Comm &v2 ) { int v3; { int err = MPI_Comm_compare( (MPI_Comm)(v1 . the_real_comm), (MPI_Comm)(v2 . the_real_comm), &v3 ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual int Get_size( void ) const { int v2; { int err = MPI_Comm_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Issend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Issend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Comm_set_errhandler( (MPI_Comm) the_real_comm, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Send( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Send( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Ssend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Ssend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Recv_init( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Recv_init( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Iprobe( int v1, int v2, Status & v5 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual bool Iprobe( int v1, int v2 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Bsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Bsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irecv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irecv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Comm_get_errhandler( (MPI_Comm) the_real_comm, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Rsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Rsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter_block( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter_block( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Gatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7, int v8 ) const { { int err = MPI_Gatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Disconnect( void ) { { int err = MPI_Comm_disconnect( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allreduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Allreduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Alltoallw( const void * v1, const int v2[], const int v3[], const Datatype v4[], void * v5, const int v6[], const int v7[], const Datatype v8[] ) const { MPI_Datatype *l4 = new MPI_Datatype[Get_size()]; MPI_Datatype *l8 = new MPI_Datatype[Get_size()]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; delete[] l8; } static Intercomm Join( const int v1 ) ; virtual void Alltoall( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Alltoall( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Comm_get_attr( (MPI_Comm) the_real_comm, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Barrier( void ) const { { int err = MPI_Barrier( (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Bcast( void* v1, int v2, const Datatype &v3, int v4 ) const { { int err = MPI_Bcast( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Comm_set_attr( (MPI_Comm) the_real_comm, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Comm_set_name( (MPI_Comm) the_real_comm, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } static Intercomm Get_parent( void ) ; virtual void Alltoallv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, const int * v6, const int * v7, const Datatype &v8 ) const { { int err = MPI_Alltoallv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, (int *)v6, (int *)v7, (MPI_Datatype)(v8 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter( const void* v1, void* v2, int * v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatter( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Scatter( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Gather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Gather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } static void Free_keyval( int &v1 ) { { int err = MPI_Comm_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Reduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5, int v6 ) const { { int err = MPI_Reduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), v6, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Allgather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Comm_delete_attr( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatterv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, int v6, const Datatype &v7, int v8 ) const { { int err = MPI_Scatterv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Comm_get_name( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7 ) const { { int err = MPI_Allgatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Comm &Clone(void) const = 0; typedef int Copy_attr_function(const Comm& oldcomm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Comm& comm, int comm_keyval, void* attribute_val, void* extra_state); typedef void Errhandler_function(Comm &, int *, ... ); typedef Errhandler_function Errhandler_fn; static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 0; return 0;} static int NULL_DELETE_FN( Comm &comm __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} static Errhandler Create_errhandler( Errhandler_function * ); }; class Nullcomm : public Comm { public: inline Nullcomm(MPI_Comm obj) : Comm(obj) {} inline Nullcomm(void) : Comm() {} virtual ~Nullcomm() {} Nullcomm(const Nullcomm &obj) : Comm(obj) {} Nullcomm& operator=(const Nullcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Nullcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } # 1525 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Nullcomm & Clone(void) const { Nullcomm *clone = new Nullcomm(); return *clone; }; }; class Intercomm : public Comm { friend class Intracomm; public: inline Intercomm(MPI_Comm obj) : Comm(obj) {} inline Intercomm(void) : Comm() {} virtual ~Intercomm() {} Intercomm(const Intercomm &obj) : Comm(obj) {} Intercomm& operator=(const Intercomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intercomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intracomm Merge( bool v2 ) const; virtual Group Get_remote_group( void ) const { Group v2; { int err = MPI_Comm_remote_group( (MPI_Comm) the_real_comm, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_remote_size( void ) const { int v2; { int err = MPI_Comm_remote_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } Intercomm Dup( void ) const { Intercomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Intercomm Split( int v2, int v3 ) const { Intercomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } # 1591 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intercomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intercomm *clone = new Intercomm(ncomm); return *clone; }; }; class Intracomm : public Comm { friend class Cartcomm; friend class Graphcomm; friend class Datatype; public: inline Intracomm(MPI_Comm obj) : Comm(obj) {} inline Intracomm(void) : Comm() {} virtual ~Intracomm() {} Intracomm(const Intracomm &obj) : Comm(obj) {} Intracomm& operator=(const Intracomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intracomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intercomm Create_intercomm( int v2, const Comm &v3, int v4, int v5 ) const { Intercomm v6; { int err = MPI_Intercomm_create( (MPI_Comm) the_real_comm, v2, (MPI_Comm)(v3 . the_real_comm), v4, v5, &(v6 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual Intracomm Split( int v2, int v3 ) const { Intracomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } virtual Graphcomm Create_graph( int v2, const int * v3, const int * v4, bool v5 ) const; virtual Cartcomm Create_cart( int v2, const int * v3, const bool v4[], bool v5 ) const; virtual Intracomm Create( const Group &v2 ) const { Intracomm v3; { int err = MPI_Comm_create( (MPI_Comm) the_real_comm, (MPI_Group)(v2 . the_real_group), &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Intracomm Dup( void ) const { Intracomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Scan( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Scan( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Exscan( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Exscan( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Intercomm Accept( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_accept( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Intercomm Connect( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_connect( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } # 1682 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intracomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intracomm *clone = new Intracomm(ncomm); return *clone; }; Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), (int *)0 ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root, int array_of_errcodes[]) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), array_of_errcodes ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root, int array_of_errcodes[]) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } }; class Grequest : public Request { public: inline Grequest(MPI_Request obj) : Request(obj) {} inline Grequest(void) : Request() {} virtual ~Grequest() {} Grequest(const Grequest &obj) : Request(obj) {} Grequest& operator=(const Grequest &obj) { the_real_request = obj.the_real_request; return *this; } bool operator== (const Grequest &obj) { return (the_real_request == obj.the_real_request); } bool operator!= (const Grequest &obj) { return (the_real_request != obj.the_real_request); } inline operator MPI_Request*() { return &the_real_request; } inline operator MPI_Request() const { return the_real_request; } Grequest& operator=(const MPI_Request& obj) { the_real_request = obj; return *this; } virtual void Complete( void ) { { int err = MPI_Grequest_complete( (MPI_Request) the_real_request ) ; if (err) MPIR_Call_world_errhand( err ); }; } typedef int Query_function( void *, Status & ); typedef int Free_function( void * ); typedef int Cancel_function( void *, bool ); Grequest Start( Query_function *query_fn, Free_function *free_fn, Cancel_function *cancel_fn, void *extra_state ); }; class Win { protected: MPI_Win the_real_win; public: inline Win(MPI_Win obj) : the_real_win(obj) {} inline Win(void) : the_real_win(((MPI_Win)0x20000000)) {} virtual ~Win() {} Win(const Win &obj) : the_real_win(obj.the_real_win){} Win& operator=(const Win &obj) { the_real_win = obj.the_real_win; return *this; } bool operator== (const Win &obj) { return (the_real_win == obj.the_real_win); } bool operator!= (const Win &obj) { return (the_real_win != obj.the_real_win); } inline operator MPI_Win*() { return &the_real_win; } inline operator MPI_Win() const { return the_real_win; } Win& operator=(const MPI_Win& obj) { the_real_win = obj; return *this; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_Win_get_group( (MPI_Win) the_real_win, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Fence( int v1 ) const { { int err = MPI_Win_fence( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Start( const Group &v1, int v2 ) const { { int err = MPI_Win_start( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Win_free( (MPI_Win *) &the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Put( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Put( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Wait( void ) const { { int err = MPI_Win_wait( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Test( void ) const { int v2; { int err = MPI_Win_test( (MPI_Win) the_real_win, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual void Get( void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Get( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Win_get_attr( (MPI_Win) the_real_win, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Win_set_attr( (MPI_Win) the_real_win, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Complete( void ) const { { int err = MPI_Win_complete( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Win_set_errhandler( (MPI_Win) the_real_win, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Win_set_name( (MPI_Win) the_real_win, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Accumulate( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7, const Op &v8 ) const { { int err = MPI_Accumulate( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Op)(v8 . the_real_op), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } static Win Create( const void * v1, Aint v2, int v3, const Info &v4, const Intracomm &v5 ) { Win v6; { int err = MPI_Win_create( (void *)v1, v2, v3, (MPI_Info)(v4 . the_real_info), (MPI_Comm)(v5 . the_real_comm), &(v6 . the_real_win) ); if (err) { (v5). Call_errhandler( err ); }}; return v6; } virtual void Call_errhandler( int v2 ) const; static void Free_keyval( int &v1 ) { { int err = MPI_Win_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Post( const Group &v1, int v2 ) const { { int err = MPI_Win_post( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Unlock( int v1 ) const { { int err = MPI_Win_unlock( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Win_delete_attr( (MPI_Win) the_real_win, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Lock( int v1, int v2, int v3 ) const { { int err = MPI_Win_lock( v1, v2, v3, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Win_get_errhandler( (MPI_Win) the_real_win, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Win_get_name( (MPI_Win) the_real_win, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } typedef void Errhandler_function(Win &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); typedef int Copy_attr_function(const Win& oldwin, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Win& win, int win_keyval, void* attribute_val, void* extra_state); static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 1; return 0;} static int NULL_DELETE_FN( Win &win __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} }; class File { protected: MPI_File the_real_file; public: inline File(MPI_File obj) : the_real_file(obj) {} inline File(void) : the_real_file(((MPI_File)0)) {} virtual ~File() {} File(const File &obj) : the_real_file(obj.the_real_file){} File& operator=(const File &obj) { the_real_file = obj.the_real_file; return *this; } bool operator== (const File &obj) { return (the_real_file == obj.the_real_file); } bool operator!= (const File &obj) { return (the_real_file != obj.the_real_file); } inline operator MPI_File*() { return &the_real_file; } inline operator MPI_File() const { return the_real_file; } File& operator=(const MPI_File& obj) { the_real_file = obj; return *this; } virtual Aint Get_type_extent( const Datatype &v2 ) const { MPI_Aint v3; { int err = MPI_File_get_type_extent( (MPI_File) the_real_file, (MPI_Datatype)(v2 . the_real_datatype), &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual void Read_ordered_end( void * v2, Status & v3 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered_end( void * v2 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Seek_shared( Offset v2, int v3 ) { { int err = MPI_File_seek_shared( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_shared( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Info Get_info( void ) const { Info v2; { int err = MPI_File_get_info( (MPI_File) the_real_file, &(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_ordered_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_info( const Info &v2 ) { { int err = MPI_File_set_info( (MPI_File) the_real_file, (MPI_Info)(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sync( void ) { { int err = MPI_File_sync( (MPI_File) the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_size( void ) const { MPI_Offset v2; { int err = MPI_File_get_size( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all_end( const void * v2 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static void Delete( const char * v1, const Info &v2 ) { { int err = MPI_File_delete( (char *)v1, (MPI_Info)(v2 . the_real_info) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; } virtual void Read_ordered_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iread_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Write_at_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_end( const void * v2 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_position_shared( void ) const { MPI_Offset v2; { int err = MPI_File_get_position_shared( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iwrite_at( (MPI_File) the_real_file, (MPI_Offset)v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Get_view( Offset & v2, Datatype &v3, Datatype &v4, char * v5 ) const { { int err = MPI_File_get_view( (MPI_File) the_real_file, &v2, (MPI_Datatype *)&(v3 . the_real_datatype), (MPI_Datatype *)&(v4 . the_real_datatype), v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Write_all_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_byte_offset( const Offset v2 ) const { MPI_Offset v3; { int err = MPI_File_get_byte_offset( (MPI_File) the_real_file, (MPI_Offset)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual Request Iread( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Read_at_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_end( void * v2 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_begin( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all_begin( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_File_get_errhandler( (MPI_File) the_real_file, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_amode( void ) const { int v2; { int err = MPI_File_get_amode( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Set_atomicity( bool v2 ) { int l2; l2 = (v2 == true) ? 1 : 0; { int err = MPI_File_set_atomicity( (MPI_File) the_real_file, l2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_File_get_group( (MPI_File) the_real_file, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Offset Get_position( void ) const { MPI_Offset v2; { int err = MPI_File_get_position( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } static File Open( const Intracomm &v1, const char * v2, int v3, const Info &v4 ) { File v5; { int err = MPI_File_open( (MPI_Comm)(v1 . the_real_comm), (char *)v2, v3, (MPI_Info)(v4 . the_real_info), &(v5 . the_real_file) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; return v5; } virtual void Seek( Offset v2, int v3 ) { { int err = MPI_File_seek( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_begin( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all_begin( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Preallocate( Offset v2 ) { { int err = MPI_File_preallocate( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Request Iwrite_shared( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_File_set_errhandler( (MPI_File) the_real_file, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_size( Offset v2 ) { { int err = MPI_File_set_size( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_view( Offset v2, const Datatype &v3, const Datatype v4, const char * v5, const Info &v6 ) { { int err = MPI_File_set_view( (MPI_File) the_real_file, v2, (MPI_Datatype)(v3 . the_real_datatype), (MPI_Datatype)v4, (char *)v5, (MPI_Info)(v6 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Close( void ) { { int err = MPI_File_close( (MPI_File *) &the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_atomicity( void ) const { int v2; { int err = MPI_File_get_atomicity( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } typedef void Errhandler_function(File &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); }; class Graphcomm : public Intracomm { public: inline Graphcomm(MPI_Comm obj) : Intracomm(obj) {} inline Graphcomm(void) : Intracomm() {} virtual ~Graphcomm() {} Graphcomm(const Graphcomm &obj) : Intracomm(obj) {} Graphcomm& operator=(const Graphcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Graphcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_dims( int * v2, int * v3 ) const { { int err = MPI_Graphdims_get( (MPI_Comm) the_real_comm, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_topo( int v2, int v3, int * v4, int * v5 ) const { { int err = MPI_Graph_get( (MPI_Comm) the_real_comm, v2, v3, v4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Map( int v2, const int * v3, const int * v4 ) const { int v5; { int err = MPI_Graph_map( (MPI_Comm) the_real_comm, v2, (int *)v3, (int *)v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Get_neighbors( int v2, int v3, int * v4 ) const { { int err = MPI_Graph_neighbors( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_neighbors_count( int v2 ) const { int v3; { int err = MPI_Graph_neighbors_count( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Graphcomm Dup( void ) const { Graphcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2360 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Graphcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Graphcomm *clone = new Graphcomm(ncomm); return *clone; }; }; class Cartcomm : public Intracomm { public: inline Cartcomm(MPI_Comm obj) : Intracomm(obj) {} inline Cartcomm(void) : Intracomm() {} virtual ~Cartcomm() {} Cartcomm(const Cartcomm &obj) : Intracomm(obj) {} Cartcomm& operator=(const Cartcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Cartcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_coords( int v2, int v3, int * v4 ) const { { int err = MPI_Cart_coords( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_cart_rank( const int * v2 ) const { int v3; { int err = MPI_Cart_rank( (MPI_Comm) the_real_comm, (int *)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual int Get_dim( void ) const { int v2; { int err = MPI_Cartdim_get( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_topo( int v2, int * v3, bool v4[], int * v5 ) const { int *l4 = new int[v2]; { int err = MPI_Cart_get( (MPI_Comm) the_real_comm, v2, v3, l4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; return v5; } virtual Cartcomm Sub( const bool v2[] ) const { Cartcomm v3; int *l2 = new int[10]; { int i2; for (i2=0;i2<10;i2++) { l2[i2] = v2[i2] == true ? 1 : 0; } } { int err = MPI_Cart_sub( (MPI_Comm) the_real_comm, l2, &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; delete[] l2; return v3; } virtual void Shift( int v2, int v3, int &v4, int &v5 ) const { { int err = MPI_Cart_shift( (MPI_Comm) the_real_comm, v2, v3, &v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; } Cartcomm Dup( void ) const { Cartcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2475 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Cartcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Cartcomm *clone = new Cartcomm(ncomm); return *clone; }; }; extern int Add_error_class( void ) ; extern void* Alloc_mem( Aint v1, const Info &v2 ) ; extern void Lookup_name( const char * v1, const Info &v2, char * v3 ) ; extern void Publish_name( const char * v1, const Info &v2, const char * v3 ) ; extern void Unpublish_name( const char * v1, const Info &v2, const char * v3 ) ; extern Aint Get_address( void * v1 ) ; extern void Add_error_string( int v1, const char * v2 ) ; extern int Query_thread( void ) ; extern void Close_port( const char * v1 ) ; extern int Add_error_code( int v1 ) ; extern void Free_mem( void * v1 ) ; extern void Open_port( const Info &v1, char * v2 ) ; extern bool Is_finalized( void ) ; extern bool Is_thread_main( void ) ; typedef int Datarep_extent_function( const Datatype&, Aint&, void *); typedef int Datarep_conversion_function( void *, Datatype &, int, void *, Offset, void * ); extern Datatype CHAR; extern Datatype UNSIGNED_CHAR; extern Datatype BYTE; extern Datatype SHORT; extern Datatype UNSIGNED_SHORT; extern Datatype INT; extern Datatype UNSIGNED; extern Datatype LONG; extern Datatype UNSIGNED_LONG; extern Datatype FLOAT; extern Datatype DOUBLE; extern Datatype LONG_DOUBLE; extern Datatype LONG_LONG_INT; extern Datatype LONG_LONG; extern Datatype PACKED; extern Datatype LB; extern Datatype UB; extern Datatype FLOAT_INT; extern Datatype DOUBLE_INT; extern Datatype LONG_INT; extern Datatype SHORT_INT; extern Datatype LONG_DOUBLE_INT; extern Datatype REAL4; extern Datatype REAL8; extern Datatype REAL16; extern Datatype COMPLEX8; extern Datatype COMPLEX16; extern Datatype COMPLEX32; extern Datatype INTEGER1; extern Datatype INTEGER2; extern Datatype INTEGER4; extern Datatype INTEGER8; extern Datatype INTEGER16; extern Datatype WCHAR; extern Datatype SIGNED_CHAR; extern Datatype UNSIGNED_LONG_LONG; extern Datatype TWOINT; extern Datatype BOOL; extern Datatype COMPLEX; extern Datatype DOUBLE_COMPLEX; extern Datatype LONG_DOUBLE_COMPLEX; extern Datatype DATATYPE_NULL; extern Datatype INTEGER; extern Datatype REAL; extern Datatype DOUBLE_PRECISION; extern Datatype F_COMPLEX; extern Datatype F_DOUBLE_COMPLEX; extern Datatype LOGICAL; extern Datatype CHARACTER; extern Datatype TWOREAL; extern Datatype TWODOUBLE_PRECISION; extern Datatype TWOINTEGER; extern const Op MAX; extern const Op MIN; extern const Op SUM; extern const Op PROD; extern const Op LAND; extern const Op BAND; extern const Op LOR; extern const Op BOR; extern const Op LXOR; extern const Op BXOR; extern const Op MINLOC; extern const Op MAXLOC; extern const Op REPLACE; extern const Op OP_NULL; extern Intracomm COMM_SELF; extern const Group GROUP_EMPTY; extern const Nullcomm COMM_NULL; extern const Group GROUP_NULL; extern const Request REQUEST_NULL; extern const Errhandler ERRHANDLER_NULL; extern const Errhandler ERRORS_RETURN; extern const Errhandler ERRORS_ARE_FATAL; extern const Errhandler ERRORS_THROW_EXCEPTIONS; extern const Info INFO_NULL; extern const Win WIN_NULL; extern const int BSEND_OVERHEAD; extern const int KEYVAL_INVALID; extern const int CART; extern const int GRAPH; extern const int IDENT; extern const int SIMILAR; extern const int CONGRUENT; extern const int UNEQUAL; extern const int PROC_NULL; extern const int ANY_TAG; extern const int ANY_SOURCE; extern const int ROOT; extern const int TAG_UB; extern const int IO; extern const int HOST; extern const int WTIME_IS_GLOBAL; extern const int UNIVERSE_SIZE; extern const int LASTUSEDCODE; extern const int APPNUM; extern const int MAX_PROCESSOR_NAME; extern const int MAX_ERROR_STRING; extern const int MAX_PORT_NAME; extern const int MAX_OBJECT_NAME; extern const int MAX_INFO_VAL; extern const int MAX_INFO_KEY; extern const int UNDEFINED; extern const int LOCK_EXCLUSIVE; extern const int LOCK_SHARED; extern const int WIN_BASE; extern const int WIN_DISP_UNIT; extern const int WIN_SIZE; extern const int SUCCESS; extern const int ERR_BUFFER; extern const int ERR_COUNT; extern const int ERR_TYPE; extern const int ERR_TAG; extern const int ERR_COMM; extern const int ERR_RANK; extern const int ERR_REQUEST; extern const int ERR_ROOT; extern const int ERR_GROUP; extern const int ERR_OP; extern const int ERR_TOPOLOGY; extern const int ERR_DIMS; extern const int ERR_ARG; extern const int ERR_UNKNOWN; extern const int ERR_TRUNCATE; extern const int ERR_OTHER; extern const int ERR_INTERN; extern const int ERR_PENDING; extern const int ERR_IN_STATUS; extern const int ERR_LASTCODE; extern const int ERR_FILE; extern const int ERR_ACCESS; extern const int ERR_AMODE; extern const int ERR_BAD_FILE; extern const int ERR_FILE_EXISTS; extern const int ERR_FILE_IN_USE; extern const int ERR_NO_SPACE; extern const int ERR_NO_SUCH_FILE; extern const int ERR_IO; extern const int ERR_READ_ONLY; extern const int ERR_CONVERSION; extern const int ERR_DUP_DATAREP; extern const int ERR_UNSUPPORTED_DATAREP; extern const int ERR_INFO; extern const int ERR_INFO_KEY; extern const int ERR_INFO_VALUE; extern const int ERR_INFO_NOKEY; extern const int ERR_NAME; extern const int ERR_NO_MEM; extern const int ERR_NOT_SAME; extern const int ERR_PORT; extern const int ERR_QUOTA; extern const int ERR_SERVICE; extern const int ERR_SPAWN; extern const int ERR_UNSUPPORTED_OPERATION; extern const int ERR_WIN; extern const int ERR_BASE; extern const int ERR_LOCKTYPE; extern const int ERR_KEYVAL; extern const int ERR_RMA_CONFLICT; extern const int ERR_RMA_SYNC; extern const int ERR_SIZE; extern const int ERR_DISP; extern const int ERR_ASSERT; extern const int TYPECLASS_REAL; extern const int TYPECLASS_INTEGER; extern const int TYPECLASS_COMPLEX; extern const int SEEK_SET; extern const int SEEK_END; extern const int SEEK_CUR; extern const int DISTRIBUTE_BLOCK; extern const int DISTRIBUTE_CYCLIC; extern const int DISTRIBUTE_DFLT_DARG; extern const int DISTRIBUTE_NONE; extern const int ORDER_C; extern const int ORDER_FORTRAN; extern const int MAX_DATAREP_STRING; extern const MPI_Offset DISPLACEMENT_CURRENT; extern const int MODE_APPEND; extern const int MODE_CREATE; extern const int MODE_DELETE_ON_CLOSE; extern const int MODE_EXCL; extern const int MODE_RDONLY; extern const int MODE_RDWR; extern const int MODE_SEQUENTIAL; extern const int MODE_UNIQUE_OPEN; extern const int MODE_WRONLY; extern const int MODE_NOCHECK; extern const int MODE_NOPRECEDE; extern const int MODE_NOPUT; extern const int MODE_NOSTORE; extern const int MODE_NOSUCCEED; extern const int COMM_TYPE_SHARED; extern const int COMBINER_CONTIGUOUS; extern const int COMBINER_DARRAY; extern const int COMBINER_DUP; extern const int COMBINER_F90_COMPLEX; extern const int COMBINER_F90_INTEGER; extern const int COMBINER_F90_REAL; extern const int COMBINER_HINDEXED_INTEGER; extern const int COMBINER_HINDEXED; extern const int COMBINER_HVECTOR_INTEGER; extern const int COMBINER_HVECTOR; extern const int COMBINER_INDEXED_BLOCK; extern const int COMBINER_INDEXED; extern const int COMBINER_NAMED; extern const int COMBINER_RESIZED; extern const int COMBINER_STRUCT_INTEGER; extern const int COMBINER_STRUCT; extern const int COMBINER_SUBARRAY; extern const int COMBINER_VECTOR; extern const int COMBINER_HINDEXED_BLOCK; extern const int THREAD_FUNNELED; extern const int THREAD_MULTIPLE; extern const int THREAD_SERIALIZED; extern const int THREAD_SINGLE; extern const char ** const ARGV_NULL; extern const char *** const ARGVS_NULL; extern void * const BOTTOM; extern void * const IN_PLACE; extern void Init(void); extern void Init(int &, char **& ); extern int Init_thread(int); extern int Init_thread(int &, char **&, int ); extern double Wtime(void); extern double Wtick(void); } # 1708 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int MPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int MPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int PMPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST configureConversion from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:212) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:212) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:232) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:232) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "4" Checking for size of type: MPI_Fint Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:244) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:244) Checking for MPI Datatype handles Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest ERROR while running executable: Could not execute "/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest": ERROR: Program was not launched by POE. Abort!!! Popping language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest ERROR while running executable: Could not execute "/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest": ERROR: Program was not launched by POE. Abort!!! Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:318) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:318) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:337) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:337) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } #ifdef __cplusplus } #endif int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_SGI_barrier': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPI_SGI_barrier' Popping language Cxx SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:347) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:347) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:365) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:365) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: mpif90 -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:390) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:390) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "fh" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "buf" is used before its value is set if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "fh" is used before its value is set if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "buf" is used before its value is set if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "fh" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "disp" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(9): warning #592: variable "info" is used before its value is set if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(8): warning #592: variable "info" is used before its value is set if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:452) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:452) Find MPI include paths from "mpicc -show" Executing: mpicc -show stdout: /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt compilers: Checking arg /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc compilers: Checking arg -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Found include directory: /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include compilers: Checking arg -I/glade/apps/opt/usr/include compilers: Found include directory: /glade/apps/opt/usr/include compilers: Checking arg -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib compilers: Checking arg -Wl,-Bstatic compilers: Checking arg -lnetcdff compilers: Checking arg -lnetcdf compilers: Checking arg -lhdf5_hl compilers: Checking arg -lhdf5 compilers: Checking arg -lsz compilers: Checking arg -lcurl compilers: Checking arg -lidn compilers: Checking arg -lssl compilers: Checking arg -lcrypto compilers: Checking arg -lz compilers: Checking arg -Wl,-Bdynamic compilers: Checking arg -lgpfs compilers: Checking arg -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 compilers: Checking arg -L/glade/apps/opt/usr/lib compilers: Checking arg -Wl,-rpath,/glade/apps/opt/usr/lib compilers: Checking arg -ldl compilers: Checking arg -m64 compilers: Checking arg -D__64BIT__ compilers: Checking arg -Wl,--allow-shlib-undefined compilers: Checking arg -Wl,--enable-new-dtags compilers: Checking arg -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Found include directory: /opt/ibmhpc/pecurrent/mpich2/intel/include64 compilers: Checking arg -I/opt/ibmhpc/pecurrent/base/include compilers: Found include directory: /opt/ibmhpc/pecurrent/base/include compilers: Checking arg -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 compilers: Checking arg -lmpi compilers: Checking arg -ldl compilers: Checking arg -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 compilers: Checking arg -lirc compilers: Checking arg -lpthread compilers: Checking arg -lrt ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:427) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:427) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(4): error: identifier "MPICH_NUMVERSION" is undefined int mpich_ver = MPICH_NUMVERSION; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(4): error: identifier "OMPI_MAJOR_VERSION" is undefined int ompi_major = OMPI_MAJOR_VERSION; ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(5): error: identifier "OMPI_MINOR_VERSION" is undefined int ompi_minor = OMPI_MINOR_VERSION; ^ /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c(6): error: identifier "OMPI_RELEASE_VERSION" is undefined int ompi_release = OMPI_RELEASE_VERSION; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Checking for functions [MPI_Alltoallw] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Alltoallw();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Win_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:19: undefined reference to `MPI_Iallreduce' /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:21: undefined reference to `MPI_Ibarrier' Popping language Cxx Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for functions [MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:11: undefined reference to `MPI_Iallreduce' /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:13: undefined reference to `MPI_Ibarrier' Popping language Cxx Checking for functions [MPI_Init_thread MPI_Iallreduce] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Init_thread(); _check_MPI_Iallreduce();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:11: undefined reference to `MPI_Iallreduce' Popping language Cxx Checking for functions [MPI_Init_thread] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Init_thread();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for functions [MPI_Iallreduce] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Iallreduce();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Iallreduce': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPI_Iallreduce' Popping language Cxx Checking for functions [MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPI_Ibarrier' Popping language Cxx Checking for functions [MPI_Ibarrier] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Ibarrier();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPI_Ibarrier': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPI_Ibarrier' Popping language Cxx Checking for functions [MPI_Finalized] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Finalized();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for functions [MPI_Exscan] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } #ifdef __cplusplus } #endif int main() { _check_MPI_Exscan();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } #ifdef __cplusplus } #endif int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Defined "HAVE_MPIX_IALLREDUCE" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } #ifdef __cplusplus } #endif int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_set': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPIDI_CH3I_sock_set' Popping language Cxx Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } #ifdef __cplusplus } #endif int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_MPIDI_CH3I_sock_fixed_nbc_progress': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `MPIDI_CH3I_sock_fixed_nbc_progress' Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mpiexec...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mpirun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mprun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mpiexec...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mpirun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mprun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mpiexec...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mpirun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mprun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mpiexec...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mpirun...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/mpd/bin/mprun...not found Checking for program /glade/apps/opt/usr/bin/mpiexec...not found Checking for program /glade/apps/opt/usr/bin/mpirun...not found Checking for program /glade/apps/opt/usr/bin/mprun...not found Checking for program /glade/apps/opt/usr/bin/mpiexec...not found Checking for program /glade/apps/opt/usr/bin/mpirun...not found Checking for program /glade/apps/opt/usr/bin/mprun...not found Checking for program /glade/apps/opt/mpd/bin/mpiexec...not found Checking for program /glade/apps/opt/mpd/bin/mpirun...not found Checking for program /glade/apps/opt/mpd/bin/mprun...not found Checking for program /glade/apps/opt/mpd/bin/mpiexec...not found Checking for program /glade/apps/opt/mpd/bin/mpirun...not found Checking for program /glade/apps/opt/mpd/bin/mprun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mpiexec...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mpirun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mprun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mpiexec...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mpirun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/intel/bin/mprun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mpiexec...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mpirun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mprun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mpiexec...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mpirun...not found Checking for program /opt/ibmhpc/pecurrent/mpich2/mpd/bin/mprun...not found Checking for program /opt/ibmhpc/pecurrent/base/bin/mpiexec...found Defined make macro "MPIEXEC" to "/opt/ibmhpc/pecurrent/base/bin/mpiexec" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -fPIC -wd1572 -g -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/glade/scratch/fandek/petsc-aqKo9_/config.libraries/lib1.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/glade/scratch/fandek/petsc-aqKo9_/config.libraries/lib2.so", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest to see if it can be run Executing: /opt/ibmhpc/pecurrent/base/bin/mpiexec /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest Executing: /opt/ibmhpc/pecurrent/base/bin/mpiexec /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest ERROR while running executable: Could not execute "/opt/ibmhpc/pecurrent/base/bin/mpiexec /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest": ERROR: 0031-121 Invalid combination of settings for MP_EUILIB, MP_HOSTFILE, and MP_RESD Library was not shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.valgrind(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language Cxx Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/usr/local/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language Cxx Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/usr/local/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Possible ERROR while running preprocessor: exit code 512 stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2stderr: /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^ : Preprocess stderr after filtering:/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc(3): error #2379: cannot open source file "valgrind/valgrind.h" #include ^: Popping language Cxx VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Linux =============================================================================== It appears you do not have valgrind installed on your system. We HIGHLY recommend you install it from www.valgrind.org Or install valgrind-devel or equivalent using your package manager. Then rerun ./configure =============================================================================== Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.ssl(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/ssl.py:23) TESTING: configureLibrary from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:23) ================================================================================== Checking for a functional ssl Checking for library in Compiler specific search SSL: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } #ifdef __cplusplus } #endif int main() { _check_SSLv23_method();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for headers Compiler specific search SSL: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openssl/ssl.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/apps/opt/usr/include/openssl/ssl.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 extern "C" { # 118 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 127 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 139 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 153 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 194 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 205 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 221 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 235 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 269 "/glade/apps/opt/usr/include/openssl/e_os2.h" # 291 "/glade/apps/opt/usr/include/openssl/e_os2.h" } # 147 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/comp.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/crypto.h" 1 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 26 "/usr/include/stdlib.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 # 75 "/usr/include/stdlib.h" 3 # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 56 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 94 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 } # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 } # 121 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 123 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/usr/include/stdio.h" 1 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 79 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 892 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 52 "/usr/include/_G_config.h" 3 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 74 "/usr/include/_G_config.h" 3 # 33 "/usr/include/libio.h" 2 3 # 49 "/usr/include/libio.h" 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 typedef __builtin_va_list __gnuc_va_list; # 128 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/include/libio.h" 2 3 # 73 "/usr/include/libio.h" 3 # 88 "/usr/include/libio.h" 3 # 104 "/usr/include/libio.h" 3 # 113 "/usr/include/libio.h" 3 # 139 "/usr/include/libio.h" 3 # 149 "/usr/include/libio.h" 3 # 168 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 270 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 __off64_t _offset; # 328 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 358 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 442 "/usr/include/libio.h" 3 # 456 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 489 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 546 "/usr/include/libio.h" 3 } # 76 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 87 "/usr/include/stdio.h" 3 # 101 "/usr/include/stdio.h" 3 typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 162 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) throw (); extern int rename (__const char *__old, __const char *__new) throw (); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) throw (); extern FILE *tmpfile (void) ; # 202 "/usr/include/stdio.h" 3 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; extern char *tempnam (__const char *__dir, __const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); extern int fcloseall (void); extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 extern FILE *fopen64 (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen64 (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, __const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, __const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, __const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) throw (); # 466 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 525 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; extern int fputs_unlocked (__const char *__restrict __s, FILE *__restrict __stream); extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 786 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, __const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern __const char *__const sys_errlist[]; extern int _sys_nerr; extern __const char *__const _sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, __const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 925 "/usr/include/stdio.h" 3 # 937 "/usr/include/stdio.h" 3 } # 126 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/stack.h" 1 extern "C" { typedef struct stack_st { int num; char **data; int sorted; int num_alloc; int (*comp)(const void *, const void *); } _STACK; int sk_num(const _STACK *); void *sk_value(const _STACK *, int); void *sk_set(_STACK *, int, void *); _STACK *sk_new(int (*cmp)(const void *, const void *)); _STACK *sk_new_null(void); void sk_free(_STACK *); void sk_pop_free(_STACK *st, void (*func)(void *)); int sk_insert(_STACK *sk, void *data, int where); void *sk_delete(_STACK *st, int loc); void *sk_delete_ptr(_STACK *st, void *p); int sk_find(_STACK *st, void *data); int sk_find_ex(_STACK *st, void *data); int sk_push(_STACK *st, void *data); int sk_unshift(_STACK *st, void *data); void *sk_shift(_STACK *st); void *sk_pop(_STACK *st); void sk_zero(_STACK *st); int (*sk_set_cmp_func(_STACK *sk, int (*c)(const void *, const void *))) (const void *, const void *); _STACK *sk_dup(_STACK *st); void sk_sort(_STACK *st); int sk_is_sorted(const _STACK *st); } # 129 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/safestack.h" 1 # 96 "/glade/apps/opt/usr/include/openssl/safestack.h" typedef char *OPENSSL_STRING; typedef const char *OPENSSL_CSTRING; struct stack_st_OPENSSL_STRING { _STACK stack; }; typedef void *OPENSSL_BLOCK; struct stack_st_OPENSSL_BLOCK { _STACK stack; }; # 180 "/glade/apps/opt/usr/include/openssl/safestack.h" # 188 "/glade/apps/opt/usr/include/openssl/safestack.h" # 229 "/glade/apps/opt/usr/include/openssl/safestack.h" # 251 "/glade/apps/opt/usr/include/openssl/safestack.h" # 273 "/glade/apps/opt/usr/include/openssl/safestack.h" # 295 "/glade/apps/opt/usr/include/openssl/safestack.h" # 317 "/glade/apps/opt/usr/include/openssl/safestack.h" # 339 "/glade/apps/opt/usr/include/openssl/safestack.h" # 361 "/glade/apps/opt/usr/include/openssl/safestack.h" # 383 "/glade/apps/opt/usr/include/openssl/safestack.h" # 405 "/glade/apps/opt/usr/include/openssl/safestack.h" # 427 "/glade/apps/opt/usr/include/openssl/safestack.h" # 449 "/glade/apps/opt/usr/include/openssl/safestack.h" # 471 "/glade/apps/opt/usr/include/openssl/safestack.h" # 493 "/glade/apps/opt/usr/include/openssl/safestack.h" # 515 "/glade/apps/opt/usr/include/openssl/safestack.h" # 537 "/glade/apps/opt/usr/include/openssl/safestack.h" # 559 "/glade/apps/opt/usr/include/openssl/safestack.h" # 581 "/glade/apps/opt/usr/include/openssl/safestack.h" # 603 "/glade/apps/opt/usr/include/openssl/safestack.h" # 625 "/glade/apps/opt/usr/include/openssl/safestack.h" # 647 "/glade/apps/opt/usr/include/openssl/safestack.h" # 669 "/glade/apps/opt/usr/include/openssl/safestack.h" # 691 "/glade/apps/opt/usr/include/openssl/safestack.h" # 713 "/glade/apps/opt/usr/include/openssl/safestack.h" # 735 "/glade/apps/opt/usr/include/openssl/safestack.h" # 757 "/glade/apps/opt/usr/include/openssl/safestack.h" # 779 "/glade/apps/opt/usr/include/openssl/safestack.h" # 801 "/glade/apps/opt/usr/include/openssl/safestack.h" # 823 "/glade/apps/opt/usr/include/openssl/safestack.h" # 845 "/glade/apps/opt/usr/include/openssl/safestack.h" # 867 "/glade/apps/opt/usr/include/openssl/safestack.h" # 889 "/glade/apps/opt/usr/include/openssl/safestack.h" # 911 "/glade/apps/opt/usr/include/openssl/safestack.h" # 933 "/glade/apps/opt/usr/include/openssl/safestack.h" # 955 "/glade/apps/opt/usr/include/openssl/safestack.h" # 977 "/glade/apps/opt/usr/include/openssl/safestack.h" # 999 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1021 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1043 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1065 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1087 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1109 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1131 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1153 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1175 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1197 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1219 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1241 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1263 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1285 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1307 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1329 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1351 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1373 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1395 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1417 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1439 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1461 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1483 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1505 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1527 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1549 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1571 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1593 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1615 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1637 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1659 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1681 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1703 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1725 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1747 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1769 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1791 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1813 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1835 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1857 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1879 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1901 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1923 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1945 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1967 "/glade/apps/opt/usr/include/openssl/safestack.h" # 1989 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2011 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2033 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2055 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2077 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2099 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2121 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2145 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2170 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2195 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2205 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2214 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2223 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2232 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2241 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2250 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2259 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2268 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2277 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2286 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2295 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2304 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2313 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2322 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2331 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2340 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2349 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2358 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2367 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2376 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2385 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2394 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2403 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2412 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2421 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2445 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2463 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2481 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2499 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2517 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2535 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2553 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2571 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2589 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2607 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2625 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2643 "/glade/apps/opt/usr/include/openssl/safestack.h" # 2661 "/glade/apps/opt/usr/include/openssl/safestack.h" # 130 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/opensslv.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslv.h" # 131 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/ossl_typ.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 59 "/glade/apps/opt/usr/include/openssl/ossl_typ.h" 2 # 79 "/glade/apps/opt/usr/include/openssl/ossl_typ.h" typedef struct asn1_string_st ASN1_INTEGER; typedef struct asn1_string_st ASN1_ENUMERATED; typedef struct asn1_string_st ASN1_BIT_STRING; typedef struct asn1_string_st ASN1_OCTET_STRING; typedef struct asn1_string_st ASN1_PRINTABLESTRING; typedef struct asn1_string_st ASN1_T61STRING; typedef struct asn1_string_st ASN1_IA5STRING; typedef struct asn1_string_st ASN1_GENERALSTRING; typedef struct asn1_string_st ASN1_UNIVERSALSTRING; typedef struct asn1_string_st ASN1_BMPSTRING; typedef struct asn1_string_st ASN1_UTCTIME; typedef struct asn1_string_st ASN1_TIME; typedef struct asn1_string_st ASN1_GENERALIZEDTIME; typedef struct asn1_string_st ASN1_VISIBLESTRING; typedef struct asn1_string_st ASN1_UTF8STRING; typedef struct asn1_string_st ASN1_STRING; typedef int ASN1_BOOLEAN; typedef int ASN1_NULL; typedef struct ASN1_ITEM_st ASN1_ITEM; typedef struct asn1_pctx_st ASN1_PCTX; # 110 "/glade/apps/opt/usr/include/openssl/ossl_typ.h" typedef struct bignum_st BIGNUM; typedef struct bignum_ctx BN_CTX; typedef struct bn_blinding_st BN_BLINDING; typedef struct bn_mont_ctx_st BN_MONT_CTX; typedef struct bn_recp_ctx_st BN_RECP_CTX; typedef struct bn_gencb_st BN_GENCB; typedef struct buf_mem_st BUF_MEM; typedef struct evp_cipher_st EVP_CIPHER; typedef struct evp_cipher_ctx_st EVP_CIPHER_CTX; typedef struct env_md_st EVP_MD; typedef struct env_md_ctx_st EVP_MD_CTX; typedef struct evp_pkey_st EVP_PKEY; typedef struct evp_pkey_asn1_method_st EVP_PKEY_ASN1_METHOD; typedef struct evp_pkey_method_st EVP_PKEY_METHOD; typedef struct evp_pkey_ctx_st EVP_PKEY_CTX; typedef struct dh_st DH; typedef struct dh_method DH_METHOD; typedef struct dsa_st DSA; typedef struct dsa_method DSA_METHOD; typedef struct rsa_st RSA; typedef struct rsa_meth_st RSA_METHOD; typedef struct rand_meth_st RAND_METHOD; typedef struct ecdh_method ECDH_METHOD; typedef struct ecdsa_method ECDSA_METHOD; typedef struct x509_st X509; typedef struct X509_algor_st X509_ALGOR; typedef struct X509_crl_st X509_CRL; typedef struct x509_crl_method_st X509_CRL_METHOD; typedef struct x509_revoked_st X509_REVOKED; typedef struct X509_name_st X509_NAME; typedef struct X509_pubkey_st X509_PUBKEY; typedef struct x509_store_st X509_STORE; typedef struct x509_store_ctx_st X509_STORE_CTX; typedef struct pkcs8_priv_key_info_st PKCS8_PRIV_KEY_INFO; typedef struct v3_ext_ctx X509V3_CTX; typedef struct conf_st CONF; typedef struct store_st STORE; typedef struct store_method_st STORE_METHOD; typedef struct ui_st UI; typedef struct ui_method_st UI_METHOD; typedef struct st_ERR_FNS ERR_FNS; typedef struct engine_st ENGINE; typedef struct ssl_st SSL; typedef struct ssl_ctx_st SSL_CTX; typedef struct X509_POLICY_NODE_st X509_POLICY_NODE; typedef struct X509_POLICY_LEVEL_st X509_POLICY_LEVEL; typedef struct X509_POLICY_TREE_st X509_POLICY_TREE; typedef struct X509_POLICY_CACHE_st X509_POLICY_CACHE; typedef struct AUTHORITY_KEYID_st AUTHORITY_KEYID; typedef struct DIST_POINT_st DIST_POINT; typedef struct ISSUING_DIST_POINT_st ISSUING_DIST_POINT; typedef struct NAME_CONSTRAINTS_st NAME_CONSTRAINTS; typedef struct crypto_ex_data_st CRYPTO_EX_DATA; typedef int CRYPTO_EX_new(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef void CRYPTO_EX_free(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef int CRYPTO_EX_dup(CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from, void *from_d, int idx, long argl, void *argp); typedef struct ocsp_req_ctx_st OCSP_REQ_CTX; typedef struct ocsp_response_st OCSP_RESPONSE; typedef struct ocsp_responder_id_st OCSP_RESPID; # 132 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/symhacks.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 59 "/glade/apps/opt/usr/include/openssl/symhacks.h" 2 # 435 "/glade/apps/opt/usr/include/openssl/symhacks.h" # 473 "/glade/apps/opt/usr/include/openssl/symhacks.h" # 140 "/glade/apps/opt/usr/include/openssl/crypto.h" 2 extern "C" { # 169 "/glade/apps/opt/usr/include/openssl/crypto.h" typedef struct openssl_item_st { int code; void *value; size_t value_size; size_t *value_length; } OPENSSL_ITEM; # 225 "/glade/apps/opt/usr/include/openssl/crypto.h" # 251 "/glade/apps/opt/usr/include/openssl/crypto.h" typedef struct { int references; struct CRYPTO_dynlock_value *data; } CRYPTO_dynlock; typedef struct bio_st BIO_dummy; struct crypto_ex_data_st { struct stack_st_void *sk; int dummy; }; struct stack_st_void { _STACK stack; }; typedef struct crypto_ex_data_func_st { long argl; void *argp; CRYPTO_EX_new *new_func; CRYPTO_EX_free *free_func; CRYPTO_EX_dup *dup_func; } CRYPTO_EX_DATA_FUNCS; struct stack_st_CRYPTO_EX_DATA_FUNCS { _STACK stack; }; # 326 "/glade/apps/opt/usr/include/openssl/crypto.h" # 355 "/glade/apps/opt/usr/include/openssl/crypto.h" int CRYPTO_mem_ctrl(int mode); int CRYPTO_is_mem_check_on(void); # 378 "/glade/apps/opt/usr/include/openssl/crypto.h" const char *SSLeay_version(int type); unsigned long SSLeay(void); int OPENSSL_issetugid(void); typedef struct st_CRYPTO_EX_DATA_IMPL CRYPTO_EX_DATA_IMPL; const CRYPTO_EX_DATA_IMPL *CRYPTO_get_ex_data_implementation(void); int CRYPTO_set_ex_data_implementation(const CRYPTO_EX_DATA_IMPL *i); int CRYPTO_ex_data_new_class(void); int CRYPTO_get_ex_new_index(int class_index, long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int CRYPTO_new_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_dup_ex_data(int class_index, CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from); void CRYPTO_free_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad); int CRYPTO_set_ex_data(CRYPTO_EX_DATA *ad, int idx, void *val); void *CRYPTO_get_ex_data(const CRYPTO_EX_DATA *ad,int idx); void CRYPTO_cleanup_all_ex_data(void); int CRYPTO_get_new_lockid(char *name); int CRYPTO_num_locks(void); void CRYPTO_lock(int mode, int type,const char *file,int line); void CRYPTO_set_locking_callback(void (*func)(int mode,int type, const char *file,int line)); void (*CRYPTO_get_locking_callback(void))(int mode,int type,const char *file, int line); void CRYPTO_set_add_lock_callback(int (*func)(int *num,int mount,int type, const char *file, int line)); int (*CRYPTO_get_add_lock_callback(void))(int *num,int mount,int type, const char *file,int line); typedef struct crypto_threadid_st { void *ptr; unsigned long val; } CRYPTO_THREADID; void CRYPTO_THREADID_set_numeric(CRYPTO_THREADID *id, unsigned long val); void CRYPTO_THREADID_set_pointer(CRYPTO_THREADID *id, void *ptr); int CRYPTO_THREADID_set_callback(void (*threadid_func)(CRYPTO_THREADID *)); void (*CRYPTO_THREADID_get_callback(void))(CRYPTO_THREADID *); void CRYPTO_THREADID_current(CRYPTO_THREADID *id); int CRYPTO_THREADID_cmp(const CRYPTO_THREADID *a, const CRYPTO_THREADID *b); void CRYPTO_THREADID_cpy(CRYPTO_THREADID *dest, const CRYPTO_THREADID *src); unsigned long CRYPTO_THREADID_hash(const CRYPTO_THREADID *id); void CRYPTO_set_id_callback(unsigned long (*func)(void)); unsigned long (*CRYPTO_get_id_callback(void))(void); unsigned long CRYPTO_thread_id(void); const char *CRYPTO_get_lock_name(int type); int CRYPTO_add_lock(int *pointer,int amount,int type, const char *file, int line); int CRYPTO_get_new_dynlockid(void); void CRYPTO_destroy_dynlockid(int i); struct CRYPTO_dynlock_value *CRYPTO_get_dynlock_value(int i); void CRYPTO_set_dynlock_create_callback(struct CRYPTO_dynlock_value *(*dyn_create_function)(const char *file, int line)); void CRYPTO_set_dynlock_lock_callback(void (*dyn_lock_function)(int mode, struct CRYPTO_dynlock_value *l, const char *file, int line)); void CRYPTO_set_dynlock_destroy_callback(void (*dyn_destroy_function)(struct CRYPTO_dynlock_value *l, const char *file, int line)); struct CRYPTO_dynlock_value *(*CRYPTO_get_dynlock_create_callback(void))(const char *file,int line); void (*CRYPTO_get_dynlock_lock_callback(void))(int mode, struct CRYPTO_dynlock_value *l, const char *file,int line); void (*CRYPTO_get_dynlock_destroy_callback(void))(struct CRYPTO_dynlock_value *l, const char *file,int line); int CRYPTO_set_mem_functions(void *(*m)(size_t),void *(*r)(void *,size_t), void (*f)(void *)); int CRYPTO_set_locked_mem_functions(void *(*m)(size_t), void (*free_func)(void *)); int CRYPTO_set_mem_ex_functions(void *(*m)(size_t,const char *,int), void *(*r)(void *,size_t,const char *,int), void (*f)(void *)); int CRYPTO_set_locked_mem_ex_functions(void *(*m)(size_t,const char *,int), void (*free_func)(void *)); int CRYPTO_set_mem_debug_functions(void (*m)(void *,int,const char *,int,int), void (*r)(void *,void *,int,const char *,int,int), void (*f)(void *,int), void (*so)(long), long (*go)(void)); void CRYPTO_get_mem_functions(void *(**m)(size_t),void *(**r)(void *, size_t), void (**f)(void *)); void CRYPTO_get_locked_mem_functions(void *(**m)(size_t), void (**f)(void *)); void CRYPTO_get_mem_ex_functions(void *(**m)(size_t,const char *,int), void *(**r)(void *, size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_locked_mem_ex_functions(void *(**m)(size_t,const char *,int), void (**f)(void *)); void CRYPTO_get_mem_debug_functions(void (**m)(void *,int,const char *,int,int), void (**r)(void *,void *,int,const char *,int,int), void (**f)(void *,int), void (**so)(long), long (**go)(void)); void *CRYPTO_malloc_locked(int num, const char *file, int line); void CRYPTO_free_locked(void *ptr); void *CRYPTO_malloc(int num, const char *file, int line); char *CRYPTO_strdup(const char *str, const char *file, int line); void CRYPTO_free(void *ptr); void *CRYPTO_realloc(void *addr,int num, const char *file, int line); void *CRYPTO_realloc_clean(void *addr,int old_num,int num,const char *file, int line); void *CRYPTO_remalloc(void *addr,int num, const char *file, int line); void OPENSSL_cleanse(void *ptr, size_t len); void CRYPTO_set_mem_debug_options(long bits); long CRYPTO_get_mem_debug_options(void); int CRYPTO_push_info_(const char *info, const char *file, int line); int CRYPTO_pop_info(void); int CRYPTO_remove_all_info(void); void CRYPTO_dbg_malloc(void *addr,int num,const char *file,int line,int before_p); void CRYPTO_dbg_realloc(void *addr1,void *addr2,int num,const char *file,int line,int before_p); void CRYPTO_dbg_free(void *addr,int before_p); void CRYPTO_dbg_set_options(long bits); long CRYPTO_dbg_get_options(void); void CRYPTO_mem_leaks_fp(FILE *); void CRYPTO_mem_leaks(struct bio_st *bio); typedef void *CRYPTO_MEM_LEAK_CB(unsigned long, const char *, int, int, void *); void CRYPTO_mem_leaks_cb(CRYPTO_MEM_LEAK_CB *cb); void OpenSSLDie(const char *file,int line,const char *assertion); unsigned long *OPENSSL_ia32cap_loc(void); int OPENSSL_isservice(void); int FIPS_mode(void); int FIPS_mode_set(int r); void OPENSSL_init(void); # 576 "/glade/apps/opt/usr/include/openssl/crypto.h" int CRYPTO_memcmp(const void *a, const void *b, size_t len); void ERR_load_CRYPTO_strings(void); # 603 "/glade/apps/opt/usr/include/openssl/crypto.h" } # 6 "/glade/apps/opt/usr/include/openssl/comp.h" 2 extern "C" { typedef struct comp_ctx_st COMP_CTX; typedef struct comp_method_st { int type; const char *name; int (*init)(COMP_CTX *ctx); void (*finish)(COMP_CTX *ctx); int (*compress)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); int (*expand)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen); long (*ctrl)(void); long (*callback_ctrl)(void); } COMP_METHOD; struct comp_ctx_st { COMP_METHOD *meth; unsigned long compress_in; unsigned long compress_out; unsigned long expand_in; unsigned long expand_out; CRYPTO_EX_DATA ex_data; }; COMP_CTX *COMP_CTX_new(COMP_METHOD *meth); void COMP_CTX_free(COMP_CTX *ctx); int COMP_compress_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); int COMP_expand_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen); COMP_METHOD *COMP_rle(void ); COMP_METHOD *COMP_zlib(void ); void COMP_zlib_cleanup(void); void ERR_load_COMP_strings(void); } # 150 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/bio.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 63 "/glade/apps/opt/usr/include/openssl/bio.h" 2 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 88 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 122 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 68 "/glade/apps/opt/usr/include/openssl/bio.h" 2 # 78 "/glade/apps/opt/usr/include/openssl/bio.h" extern "C" { # 111 "/glade/apps/opt/usr/include/openssl/bio.h" # 136 "/glade/apps/opt/usr/include/openssl/bio.h" # 151 "/glade/apps/opt/usr/include/openssl/bio.h" # 166 "/glade/apps/opt/usr/include/openssl/bio.h" # 192 "/glade/apps/opt/usr/include/openssl/bio.h" # 205 "/glade/apps/opt/usr/include/openssl/bio.h" typedef struct bio_st BIO; void BIO_set_flags(BIO *b, int flags); int BIO_test_flags(const BIO *b, int flags); void BIO_clear_flags(BIO *b, int flags); # 244 "/glade/apps/opt/usr/include/openssl/bio.h" # 277 "/glade/apps/opt/usr/include/openssl/bio.h" long (*BIO_get_callback(const BIO *b)) (struct bio_st *,int,const char *,int, long,long); void BIO_set_callback(BIO *b, long (*callback)(struct bio_st *,int,const char *,int, long,long)); char *BIO_get_callback_arg(const BIO *b); void BIO_set_callback_arg(BIO *b, char *arg); const char * BIO_method_name(const BIO *b); int BIO_method_type(const BIO *b); typedef void bio_info_cb(struct bio_st *, int, const char *, int, long, long); typedef struct bio_method_st { int type; const char *name; int (*bwrite)(BIO *, const char *, int); int (*bread)(BIO *, char *, int); int (*bputs)(BIO *, const char *); int (*bgets)(BIO *, char *, int); long (*ctrl)(BIO *, int, long, void *); int (*create)(BIO *); int (*destroy)(BIO *); long (*callback_ctrl)(BIO *, int, bio_info_cb *); } BIO_METHOD; struct bio_st { BIO_METHOD *method; long (*callback)(struct bio_st *,int,const char *,int, long,long); char *cb_arg; int init; int shutdown; int flags; int retry_reason; int num; void *ptr; struct bio_st *next_bio; struct bio_st *prev_bio; int references; unsigned long num_read; unsigned long num_write; CRYPTO_EX_DATA ex_data; }; struct stack_st_BIO { _STACK stack; }; typedef struct bio_f_buffer_ctx_struct { int ibuf_size; int obuf_size; char *ibuf; int ibuf_len; int ibuf_off; char *obuf; int obuf_len; int obuf_off; } BIO_F_BUFFER_CTX; typedef int asn1_ps_func(BIO *b, unsigned char **pbuf, int *plen, void *parg); # 388 "/glade/apps/opt/usr/include/openssl/bio.h" # 398 "/glade/apps/opt/usr/include/openssl/bio.h" # 436 "/glade/apps/opt/usr/include/openssl/bio.h" # 450 "/glade/apps/opt/usr/include/openssl/bio.h" # 471 "/glade/apps/opt/usr/include/openssl/bio.h" # 533 "/glade/apps/opt/usr/include/openssl/bio.h" # 547 "/glade/apps/opt/usr/include/openssl/bio.h" # 573 "/glade/apps/opt/usr/include/openssl/bio.h" size_t BIO_ctrl_pending(BIO *b); size_t BIO_ctrl_wpending(BIO *b); size_t BIO_ctrl_get_write_guarantee(BIO *b); size_t BIO_ctrl_get_read_request(BIO *b); int BIO_ctrl_reset_read_request(BIO *b); # 610 "/glade/apps/opt/usr/include/openssl/bio.h" int BIO_set_ex_data(BIO *bio,int idx,void *data); void *BIO_get_ex_data(BIO *bio,int idx); int BIO_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); unsigned long BIO_number_read(BIO *bio); unsigned long BIO_number_written(BIO *bio); int BIO_asn1_set_prefix(BIO *b, asn1_ps_func *prefix, asn1_ps_func *prefix_free); int BIO_asn1_get_prefix(BIO *b, asn1_ps_func **pprefix, asn1_ps_func **pprefix_free); int BIO_asn1_set_suffix(BIO *b, asn1_ps_func *suffix, asn1_ps_func *suffix_free); int BIO_asn1_get_suffix(BIO *b, asn1_ps_func **psuffix, asn1_ps_func **psuffix_free); BIO_METHOD *BIO_s_file(void ); BIO *BIO_new_file(const char *filename, const char *mode); BIO *BIO_new_fp(FILE *stream, int close_flag); BIO * BIO_new(BIO_METHOD *type); int BIO_set(BIO *a,BIO_METHOD *type); int BIO_free(BIO *a); void BIO_vfree(BIO *a); int BIO_read(BIO *b, void *data, int len); int BIO_gets(BIO *bp,char *buf, int size); int BIO_write(BIO *b, const void *data, int len); int BIO_puts(BIO *bp,const char *buf); int BIO_indent(BIO *b,int indent,int max); long BIO_ctrl(BIO *bp,int cmd,long larg,void *parg); long BIO_callback_ctrl(BIO *b, int cmd, void (*fp)(struct bio_st *, int, const char *, int, long, long)); char * BIO_ptr_ctrl(BIO *bp,int cmd,long larg); long BIO_int_ctrl(BIO *bp,int cmd,long larg,int iarg); BIO * BIO_push(BIO *b,BIO *append); BIO * BIO_pop(BIO *b); void BIO_free_all(BIO *a); BIO * BIO_find_type(BIO *b,int bio_type); BIO * BIO_next(BIO *b); BIO * BIO_get_retry_BIO(BIO *bio, int *reason); int BIO_get_retry_reason(BIO *bio); BIO * BIO_dup_chain(BIO *in); int BIO_nread0(BIO *bio, char **buf); int BIO_nread(BIO *bio, char **buf, int num); int BIO_nwrite0(BIO *bio, char **buf); int BIO_nwrite(BIO *bio, char **buf, int num); long BIO_debug_callback(BIO *bio,int cmd,const char *argp,int argi, long argl,long ret); BIO_METHOD *BIO_s_mem(void); BIO *BIO_new_mem_buf(void *buf, int len); BIO_METHOD *BIO_s_socket(void); BIO_METHOD *BIO_s_connect(void); BIO_METHOD *BIO_s_accept(void); BIO_METHOD *BIO_s_fd(void); BIO_METHOD *BIO_s_log(void); BIO_METHOD *BIO_s_bio(void); BIO_METHOD *BIO_s_null(void); BIO_METHOD *BIO_f_null(void); BIO_METHOD *BIO_f_buffer(void); BIO_METHOD *BIO_f_nbio_test(void); BIO_METHOD *BIO_s_datagram(void); int BIO_sock_should_retry(int i); int BIO_sock_non_fatal_error(int error); int BIO_dgram_non_fatal_error(int error); int BIO_fd_should_retry(int i); int BIO_fd_non_fatal_error(int error); int BIO_dump_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len); int BIO_dump_indent_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len, int indent); int BIO_dump(BIO *b,const char *bytes,int len); int BIO_dump_indent(BIO *b,const char *bytes,int len,int indent); int BIO_dump_fp(FILE *fp, const char *s, int len); int BIO_dump_indent_fp(FILE *fp, const char *s, int len, int indent); struct hostent *BIO_gethostbyname(const char *name); int BIO_sock_error(int sock); int BIO_socket_ioctl(int fd, long type, void *arg); int BIO_socket_nbio(int fd,int mode); int BIO_get_port(const char *str, unsigned short *port_ptr); int BIO_get_host_ip(const char *str, unsigned char *ip); int BIO_get_accept_socket(char *host_port,int mode); int BIO_accept(int sock,char **ip_port); int BIO_sock_init(void ); void BIO_sock_cleanup(void); int BIO_set_tcp_ndelay(int sock,int turn_on); BIO *BIO_new_socket(int sock, int close_flag); BIO *BIO_new_dgram(int fd, int close_flag); # 740 "/glade/apps/opt/usr/include/openssl/bio.h" BIO *BIO_new_fd(int fd, int close_flag); BIO *BIO_new_connect(char *host_port); BIO *BIO_new_accept(char *host_port); int BIO_new_bio_pair(BIO **bio1, size_t writebuf1, BIO **bio2, size_t writebuf2); void BIO_copy_next_retry(BIO *b); int BIO_printf(BIO *bio, const char *format, ...) __attribute__((__format__(__printf__,2,3))); int BIO_vprintf(BIO *bio, const char *format, va_list args) __attribute__((__format__(__printf__,2,0))); int BIO_snprintf(char *buf, size_t n, const char *format, ...) __attribute__((__format__(__printf__,3,4))); int BIO_vsnprintf(char *buf, size_t n, const char *format, va_list args) __attribute__((__format__(__printf__,3,0))); void ERR_load_BIO_strings(void); # 812 "/glade/apps/opt/usr/include/openssl/bio.h" # 843 "/glade/apps/opt/usr/include/openssl/bio.h" } # 153 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/x509.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 68 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/buffer.h" 1 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 69 "/glade/apps/opt/usr/include/openssl/buffer.h" 2 struct buf_mem_st { size_t length; char *data; size_t max; }; BUF_MEM *BUF_MEM_new(void); void BUF_MEM_free(BUF_MEM *a); int BUF_MEM_grow(BUF_MEM *str, size_t len); int BUF_MEM_grow_clean(BUF_MEM *str, size_t len); char * BUF_strdup(const char *str); char * BUF_strndup(const char *str, size_t siz); void * BUF_memdup(const void *data, size_t siz); void BUF_reverse(unsigned char *out, const unsigned char *in, size_t siz); size_t BUF_strlcpy(char *dst,const char *src,size_t siz); size_t BUF_strlcat(char *dst,const char *src,size_t siz); void ERR_load_BUF_strings(void); # 113 "/glade/apps/opt/usr/include/openssl/buffer.h" } # 71 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/evp.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 67 "/glade/apps/opt/usr/include/openssl/evp.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/objects.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/obj_mac.h" 1 # 66 "/glade/apps/opt/usr/include/openssl/objects.h" 2 # 958 "/glade/apps/opt/usr/include/openssl/objects.h" # 1 "/glade/apps/opt/usr/include/openssl/asn1.h" 1 # 1 "/usr/include/time.h" 1 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 39 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 43 "/usr/include/bits/time.h" 3 # 43 "/usr/include/time.h" 2 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 # 128 "/usr/include/time.h" 3 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 178 "/usr/include/time.h" 3 extern clock_t clock (void) throw (); extern time_t time (time_t *__timer) throw (); extern double difftime (time_t __time1, time_t __time0) throw () __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) throw (); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) throw (); extern char *strptime (__const char *__restrict __s, __const char *__restrict __fmt, struct tm *__tp) throw (); extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) throw (); extern char *strptime_l (__const char *__restrict __s, __const char *__restrict __fmt, struct tm *__tp, __locale_t __loc) throw (); extern struct tm *gmtime (__const time_t *__timer) throw (); extern struct tm *localtime (__const time_t *__timer) throw (); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern char *asctime (__const struct tm *__tp) throw (); extern char *ctime (__const time_t *__timer) throw (); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) throw (); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) throw (); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) throw (); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) throw (); extern time_t timegm (struct tm *__tp) throw (); extern time_t timelocal (struct tm *__tp) throw (); extern int dysize (int __year) throw () __attribute__ ((__const__)); extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) throw (); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) throw (); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) throw (); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) throw (); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) throw (); extern int timer_delete (timer_t __timerid) throw (); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) throw (); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) throw (); extern int timer_getoverrun (timer_t __timerid) throw (); extern int getdate_err; extern struct tm *getdate (__const char *__string); extern int getdate_r (__const char *__restrict __string, struct tm *__restrict __resbufp); } # 63 "/glade/apps/opt/usr/include/openssl/asn1.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 64 "/glade/apps/opt/usr/include/openssl/asn1.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/bn.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 129 "/glade/apps/opt/usr/include/openssl/bn.h" 2 extern "C" { # 174 "/glade/apps/opt/usr/include/openssl/bn.h" # 199 "/glade/apps/opt/usr/include/openssl/bn.h" # 226 "/glade/apps/opt/usr/include/openssl/bn.h" # 255 "/glade/apps/opt/usr/include/openssl/bn.h" # 273 "/glade/apps/opt/usr/include/openssl/bn.h" # 283 "/glade/apps/opt/usr/include/openssl/bn.h" # 306 "/glade/apps/opt/usr/include/openssl/bn.h" # 317 "/glade/apps/opt/usr/include/openssl/bn.h" struct bignum_st { unsigned long *d; int top; int dmax; int neg; int flags; }; struct bn_mont_ctx_st { int ri; BIGNUM RR; BIGNUM N; BIGNUM Ni; unsigned long n0[2]; int flags; }; struct bn_recp_ctx_st { BIGNUM N; BIGNUM Nr; int num_bits; int shift; int flags; }; struct bn_gencb_st { unsigned int ver; void *arg; union { void (*cb_1)(int, int, void *); int (*cb_2)(int, int, BN_GENCB *); } cb; }; int BN_GENCB_call(BN_GENCB *cb, int a, int b); # 401 "/glade/apps/opt/usr/include/openssl/bn.h" # 411 "/glade/apps/opt/usr/include/openssl/bn.h" # 424 "/glade/apps/opt/usr/include/openssl/bn.h" const BIGNUM *BN_value_one(void); char * BN_options(void); BN_CTX *BN_CTX_new(void); void BN_CTX_init(BN_CTX *c); void BN_CTX_free(BN_CTX *c); void BN_CTX_start(BN_CTX *ctx); BIGNUM *BN_CTX_get(BN_CTX *ctx); void BN_CTX_end(BN_CTX *ctx); int BN_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_pseudo_rand(BIGNUM *rnd, int bits, int top,int bottom); int BN_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_pseudo_rand_range(BIGNUM *rnd, const BIGNUM *range); int BN_num_bits(const BIGNUM *a); int BN_num_bits_word(unsigned long); BIGNUM *BN_new(void); void BN_init(BIGNUM *); void BN_clear_free(BIGNUM *a); BIGNUM *BN_copy(BIGNUM *a, const BIGNUM *b); void BN_swap(BIGNUM *a, BIGNUM *b); BIGNUM *BN_bin2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2bin(const BIGNUM *a, unsigned char *to); BIGNUM *BN_mpi2bn(const unsigned char *s,int len,BIGNUM *ret); int BN_bn2mpi(const BIGNUM *a, unsigned char *to); int BN_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_usub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_uadd(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int BN_sqr(BIGNUM *r, const BIGNUM *a,BN_CTX *ctx); void BN_set_negative(BIGNUM *b, int n); int BN_div(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_nnmod(BIGNUM *r, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx); int BN_mod_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_add_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sub_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m); int BN_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx); int BN_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift1_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *m); int BN_mod_lshift(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m, BN_CTX *ctx); int BN_mod_lshift_quick(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m); unsigned long BN_mod_word(const BIGNUM *a, unsigned long w); unsigned long BN_div_word(BIGNUM *a, unsigned long w); int BN_mul_word(BIGNUM *a, unsigned long w); int BN_add_word(BIGNUM *a, unsigned long w); int BN_sub_word(BIGNUM *a, unsigned long w); int BN_set_word(BIGNUM *a, unsigned long w); unsigned long BN_get_word(const BIGNUM *a); int BN_cmp(const BIGNUM *a, const BIGNUM *b); void BN_free(BIGNUM *a); int BN_is_bit_set(const BIGNUM *a, int n); int BN_lshift(BIGNUM *r, const BIGNUM *a, int n); int BN_lshift1(BIGNUM *r, const BIGNUM *a); int BN_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p,BN_CTX *ctx); int BN_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mod_exp_mont(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp_mont_consttime(BIGNUM *rr, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int BN_mod_exp_mont_word(BIGNUM *r, unsigned long a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int BN_mod_exp2_mont(BIGNUM *r, const BIGNUM *a1, const BIGNUM *p1, const BIGNUM *a2, const BIGNUM *p2,const BIGNUM *m, BN_CTX *ctx,BN_MONT_CTX *m_ctx); int BN_mod_exp_simple(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx); int BN_mask_bits(BIGNUM *a,int n); int BN_print_fp(FILE *fp, const BIGNUM *a); int BN_print(BIO *fp, const BIGNUM *a); int BN_reciprocal(BIGNUM *r, const BIGNUM *m, int len, BN_CTX *ctx); int BN_rshift(BIGNUM *r, const BIGNUM *a, int n); int BN_rshift1(BIGNUM *r, const BIGNUM *a); void BN_clear(BIGNUM *a); BIGNUM *BN_dup(const BIGNUM *a); int BN_ucmp(const BIGNUM *a, const BIGNUM *b); int BN_set_bit(BIGNUM *a, int n); int BN_clear_bit(BIGNUM *a, int n); char * BN_bn2hex(const BIGNUM *a); char * BN_bn2dec(const BIGNUM *a); int BN_hex2bn(BIGNUM **a, const char *str); int BN_dec2bn(BIGNUM **a, const char *str); int BN_asc2bn(BIGNUM **a, const char *str); int BN_gcd(BIGNUM *r,const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); int BN_kronecker(const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx); BIGNUM *BN_mod_inverse(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_mod_sqrt(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx); BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, void (*callback)(int,int,void *),void *cb_arg); int BN_is_prime(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *), BN_CTX *ctx,void *cb_arg); int BN_is_prime_fasttest(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *),BN_CTX *ctx,void *cb_arg, int do_trial_division); int BN_generate_prime_ex(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, BN_GENCB *cb); int BN_is_prime_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, BN_GENCB *cb); int BN_is_prime_fasttest_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, int do_trial_division, BN_GENCB *cb); int BN_X931_generate_Xpq(BIGNUM *Xp, BIGNUM *Xq, int nbits, BN_CTX *ctx); int BN_X931_derive_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, const BIGNUM *Xp, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); int BN_X931_generate_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, BIGNUM *Xp1, BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb); BN_MONT_CTX *BN_MONT_CTX_new(void ); void BN_MONT_CTX_init(BN_MONT_CTX *ctx); int BN_mod_mul_montgomery(BIGNUM *r,const BIGNUM *a,const BIGNUM *b, BN_MONT_CTX *mont, BN_CTX *ctx); int BN_from_montgomery(BIGNUM *r,const BIGNUM *a, BN_MONT_CTX *mont, BN_CTX *ctx); void BN_MONT_CTX_free(BN_MONT_CTX *mont); int BN_MONT_CTX_set(BN_MONT_CTX *mont,const BIGNUM *mod,BN_CTX *ctx); BN_MONT_CTX *BN_MONT_CTX_copy(BN_MONT_CTX *to,BN_MONT_CTX *from); BN_MONT_CTX *BN_MONT_CTX_set_locked(BN_MONT_CTX **pmont, int lock, const BIGNUM *mod, BN_CTX *ctx); BN_BLINDING *BN_BLINDING_new(const BIGNUM *A, const BIGNUM *Ai, BIGNUM *mod); void BN_BLINDING_free(BN_BLINDING *b); int BN_BLINDING_update(BN_BLINDING *b,BN_CTX *ctx); int BN_BLINDING_convert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_invert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx); int BN_BLINDING_convert_ex(BIGNUM *n, BIGNUM *r, BN_BLINDING *b, BN_CTX *); int BN_BLINDING_invert_ex(BIGNUM *n, const BIGNUM *r, BN_BLINDING *b, BN_CTX *); unsigned long BN_BLINDING_get_thread_id(const BN_BLINDING *); void BN_BLINDING_set_thread_id(BN_BLINDING *, unsigned long); CRYPTO_THREADID *BN_BLINDING_thread_id(BN_BLINDING *); unsigned long BN_BLINDING_get_flags(const BN_BLINDING *); void BN_BLINDING_set_flags(BN_BLINDING *, unsigned long); BN_BLINDING *BN_BLINDING_create_param(BN_BLINDING *b, const BIGNUM *e, BIGNUM *m, BN_CTX *ctx, int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx), BN_MONT_CTX *m_ctx); void BN_set_params(int mul,int high,int low,int mont); int BN_get_params(int which); void BN_RECP_CTX_init(BN_RECP_CTX *recp); BN_RECP_CTX *BN_RECP_CTX_new(void); void BN_RECP_CTX_free(BN_RECP_CTX *recp); int BN_RECP_CTX_set(BN_RECP_CTX *recp,const BIGNUM *rdiv,BN_CTX *ctx); int BN_mod_mul_reciprocal(BIGNUM *r, const BIGNUM *x, const BIGNUM *y, BN_RECP_CTX *recp,BN_CTX *ctx); int BN_mod_exp_recp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx); int BN_div_recp(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, BN_RECP_CTX *recp, BN_CTX *ctx); int BN_GF2m_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b); int BN_GF2m_mod(BIGNUM *r, const BIGNUM *a, const BIGNUM *p); int BN_GF2m_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_inv(BIGNUM *r, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_div(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_sqrt(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_solve_quad(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_GF2m_mod_arr(BIGNUM *r, const BIGNUM *a, const int p[]); int BN_GF2m_mod_mul_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqr_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_inv_arr(BIGNUM *r, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_div_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_exp_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const int p[], BN_CTX *ctx); int BN_GF2m_mod_sqrt_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_mod_solve_quad_arr(BIGNUM *r, const BIGNUM *a, const int p[], BN_CTX *ctx); int BN_GF2m_poly2arr(const BIGNUM *a, int p[], int max); int BN_GF2m_arr2poly(const int p[], BIGNUM *a); int BN_nist_mod_192(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_224(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_256(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_384(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); int BN_nist_mod_521(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx); const BIGNUM *BN_get0_nist_prime_192(void); const BIGNUM *BN_get0_nist_prime_224(void); const BIGNUM *BN_get0_nist_prime_256(void); const BIGNUM *BN_get0_nist_prime_384(void); const BIGNUM *BN_get0_nist_prime_521(void); BIGNUM *bn_expand2(BIGNUM *a, int words); BIGNUM *bn_dup_expand(const BIGNUM *a, int words); # 778 "/glade/apps/opt/usr/include/openssl/bn.h" # 797 "/glade/apps/opt/usr/include/openssl/bn.h" unsigned long bn_mul_add_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); unsigned long bn_mul_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w); void bn_sqr_words(unsigned long *rp, const unsigned long *ap, int num); unsigned long bn_div_words(unsigned long h, unsigned long l, unsigned long d); unsigned long bn_add_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); unsigned long bn_sub_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num); BIGNUM *get_rfc2409_prime_768(BIGNUM *bn); BIGNUM *get_rfc2409_prime_1024(BIGNUM *bn); BIGNUM *get_rfc3526_prime_1536(BIGNUM *bn); BIGNUM *get_rfc3526_prime_2048(BIGNUM *bn); BIGNUM *get_rfc3526_prime_3072(BIGNUM *bn); BIGNUM *get_rfc3526_prime_4096(BIGNUM *bn); BIGNUM *get_rfc3526_prime_6144(BIGNUM *bn); BIGNUM *get_rfc3526_prime_8192(BIGNUM *bn); int BN_bntest_rand(BIGNUM *rnd, int bits, int top,int bottom); void ERR_load_BN_strings(void); # 868 "/glade/apps/opt/usr/include/openssl/bn.h" # 887 "/glade/apps/opt/usr/include/openssl/bn.h" } # 75 "/glade/apps/opt/usr/include/openssl/asn1.h" 2 extern "C" { # 132 "/glade/apps/opt/usr/include/openssl/asn1.h" # 153 "/glade/apps/opt/usr/include/openssl/asn1.h" struct X509_algor_st; struct stack_st_X509_ALGOR { _STACK stack; }; typedef struct asn1_ctx_st { unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; unsigned char *max; unsigned char *q; unsigned char **pp; int line; } ASN1_CTX; typedef struct asn1_const_ctx_st { const unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; const unsigned char *max; const unsigned char *q; const unsigned char **pp; int line; } ASN1_const_CTX; typedef struct asn1_object_st { const char *sn,*ln; int nid; int length; const unsigned char *data; int flags; } ASN1_OBJECT; struct asn1_string_st { int length; int type; unsigned char *data; long flags; }; typedef struct ASN1_ENCODING_st { unsigned char *enc; long len; int modified; } ASN1_ENCODING; typedef struct asn1_string_table_st { int nid; long minsize; long maxsize; unsigned long mask; unsigned long flags; } ASN1_STRING_TABLE; struct stack_st_ASN1_STRING_TABLE { _STACK stack; }; # 291 "/glade/apps/opt/usr/include/openssl/asn1.h" typedef struct ASN1_TEMPLATE_st ASN1_TEMPLATE; typedef struct ASN1_TLC_st ASN1_TLC; typedef struct ASN1_VALUE_st ASN1_VALUE; # 357 "/glade/apps/opt/usr/include/openssl/asn1.h" typedef void *d2i_of_void(void * *,const unsigned char * *,long); typedef int i2d_of_void(void *,unsigned char * *); typedef const ASN1_ITEM ASN1_ITEM_EXP; # 436 "/glade/apps/opt/usr/include/openssl/asn1.h" # 515 "/glade/apps/opt/usr/include/openssl/asn1.h" struct stack_st_ASN1_INTEGER { _STACK stack; }; struct stack_st_ASN1_GENERALSTRING { _STACK stack; }; typedef struct asn1_type_st { int type; union { char *ptr; ASN1_BOOLEAN boolean; ASN1_STRING * asn1_string; ASN1_OBJECT * object; ASN1_INTEGER * integer; ASN1_ENUMERATED * enumerated; ASN1_BIT_STRING * bit_string; ASN1_OCTET_STRING * octet_string; ASN1_PRINTABLESTRING * printablestring; ASN1_T61STRING * t61string; ASN1_IA5STRING * ia5string; ASN1_GENERALSTRING * generalstring; ASN1_BMPSTRING * bmpstring; ASN1_UNIVERSALSTRING * universalstring; ASN1_UTCTIME * utctime; ASN1_GENERALIZEDTIME * generalizedtime; ASN1_VISIBLESTRING * visiblestring; ASN1_UTF8STRING * utf8string; ASN1_STRING * set; ASN1_STRING * sequence; ASN1_VALUE * asn1_value; } value; } ASN1_TYPE; struct stack_st_ASN1_TYPE { _STACK stack; }; typedef struct stack_st_ASN1_TYPE ASN1_SEQUENCE_ANY; ASN1_SEQUENCE_ANY *d2i_ASN1_SEQUENCE_ANY(ASN1_SEQUENCE_ANY * *a, const unsigned char * *in, long len); int i2d_ASN1_SEQUENCE_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char * *out); extern const ASN1_ITEM ASN1_SEQUENCE_ANY_it; ASN1_SEQUENCE_ANY *d2i_ASN1_SET_ANY(ASN1_SEQUENCE_ANY * *a, const unsigned char * *in, long len); int i2d_ASN1_SET_ANY(const ASN1_SEQUENCE_ANY *a, unsigned char * *out); extern const ASN1_ITEM ASN1_SET_ANY_it; typedef struct NETSCAPE_X509_st { ASN1_OCTET_STRING *header; X509 *cert; } NETSCAPE_X509; typedef struct BIT_STRING_BITNAME_st { int bitnum; const char *lname; const char *sname; } BIT_STRING_BITNAME; # 587 "/glade/apps/opt/usr/include/openssl/asn1.h" # 595 "/glade/apps/opt/usr/include/openssl/asn1.h" # 603 "/glade/apps/opt/usr/include/openssl/asn1.h" # 616 "/glade/apps/opt/usr/include/openssl/asn1.h" # 632 "/glade/apps/opt/usr/include/openssl/asn1.h" # 639 "/glade/apps/opt/usr/include/openssl/asn1.h" # 653 "/glade/apps/opt/usr/include/openssl/asn1.h" # 661 "/glade/apps/opt/usr/include/openssl/asn1.h" # 669 "/glade/apps/opt/usr/include/openssl/asn1.h" # 679 "/glade/apps/opt/usr/include/openssl/asn1.h" # 689 "/glade/apps/opt/usr/include/openssl/asn1.h" # 701 "/glade/apps/opt/usr/include/openssl/asn1.h" # 729 "/glade/apps/opt/usr/include/openssl/asn1.h" # 739 "/glade/apps/opt/usr/include/openssl/asn1.h" # 749 "/glade/apps/opt/usr/include/openssl/asn1.h" # 759 "/glade/apps/opt/usr/include/openssl/asn1.h" # 769 "/glade/apps/opt/usr/include/openssl/asn1.h" ASN1_TYPE *ASN1_TYPE_new(void); void ASN1_TYPE_free(ASN1_TYPE *a); ASN1_TYPE *d2i_ASN1_TYPE(ASN1_TYPE * *a, const unsigned char * *in, long len); int i2d_ASN1_TYPE(ASN1_TYPE *a, unsigned char * *out); extern const ASN1_ITEM ASN1_ANY_it; int ASN1_TYPE_get(ASN1_TYPE *a); void ASN1_TYPE_set(ASN1_TYPE *a, int type, void *value); int ASN1_TYPE_set1(ASN1_TYPE *a, int type, const void *value); int ASN1_TYPE_cmp(ASN1_TYPE *a, ASN1_TYPE *b); ASN1_OBJECT * ASN1_OBJECT_new(void ); void ASN1_OBJECT_free(ASN1_OBJECT *a); int i2d_ASN1_OBJECT(ASN1_OBJECT *a,unsigned char **pp); ASN1_OBJECT * c2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); ASN1_OBJECT * d2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length); extern const ASN1_ITEM ASN1_OBJECT_it; struct stack_st_ASN1_OBJECT { _STACK stack; }; ASN1_STRING * ASN1_STRING_new(void); void ASN1_STRING_free(ASN1_STRING *a); int ASN1_STRING_copy(ASN1_STRING *dst, const ASN1_STRING *str); ASN1_STRING * ASN1_STRING_dup(const ASN1_STRING *a); ASN1_STRING * ASN1_STRING_type_new(int type ); int ASN1_STRING_cmp(const ASN1_STRING *a, const ASN1_STRING *b); int ASN1_STRING_set(ASN1_STRING *str, const void *data, int len); void ASN1_STRING_set0(ASN1_STRING *str, void *data, int len); int ASN1_STRING_length(const ASN1_STRING *x); void ASN1_STRING_length_set(ASN1_STRING *x, int n); int ASN1_STRING_type(ASN1_STRING *x); unsigned char * ASN1_STRING_data(ASN1_STRING *x); ASN1_BIT_STRING *ASN1_BIT_STRING_new(void); void ASN1_BIT_STRING_free(ASN1_BIT_STRING *a); ASN1_BIT_STRING *d2i_ASN1_BIT_STRING(ASN1_BIT_STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_BIT_STRING(ASN1_BIT_STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_BIT_STRING_it; int i2c_ASN1_BIT_STRING(ASN1_BIT_STRING *a,unsigned char **pp); ASN1_BIT_STRING *c2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a,const unsigned char **pp, long length); int ASN1_BIT_STRING_set(ASN1_BIT_STRING *a, unsigned char *d, int length ); int ASN1_BIT_STRING_set_bit(ASN1_BIT_STRING *a, int n, int value); int ASN1_BIT_STRING_get_bit(ASN1_BIT_STRING *a, int n); int ASN1_BIT_STRING_check(ASN1_BIT_STRING *a, unsigned char *flags, int flags_len); int ASN1_BIT_STRING_name_print(BIO *out, ASN1_BIT_STRING *bs, BIT_STRING_BITNAME *tbl, int indent); int ASN1_BIT_STRING_num_asc(char *name, BIT_STRING_BITNAME *tbl); int ASN1_BIT_STRING_set_asc(ASN1_BIT_STRING *bs, char *name, int value, BIT_STRING_BITNAME *tbl); int i2d_ASN1_BOOLEAN(int a,unsigned char **pp); int d2i_ASN1_BOOLEAN(int *a,const unsigned char **pp,long length); ASN1_INTEGER *ASN1_INTEGER_new(void); void ASN1_INTEGER_free(ASN1_INTEGER *a); ASN1_INTEGER *d2i_ASN1_INTEGER(ASN1_INTEGER * *a, const unsigned char * *in, long len); int i2d_ASN1_INTEGER(ASN1_INTEGER *a, unsigned char * *out); extern const ASN1_ITEM ASN1_INTEGER_it; int i2c_ASN1_INTEGER(ASN1_INTEGER *a,unsigned char **pp); ASN1_INTEGER *c2i_ASN1_INTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER *d2i_ASN1_UINTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length); ASN1_INTEGER * ASN1_INTEGER_dup(const ASN1_INTEGER *x); int ASN1_INTEGER_cmp(const ASN1_INTEGER *x, const ASN1_INTEGER *y); ASN1_ENUMERATED *ASN1_ENUMERATED_new(void); void ASN1_ENUMERATED_free(ASN1_ENUMERATED *a); ASN1_ENUMERATED *d2i_ASN1_ENUMERATED(ASN1_ENUMERATED * *a, const unsigned char * *in, long len); int i2d_ASN1_ENUMERATED(ASN1_ENUMERATED *a, unsigned char * *out); extern const ASN1_ITEM ASN1_ENUMERATED_it; int ASN1_UTCTIME_check(ASN1_UTCTIME *a); ASN1_UTCTIME *ASN1_UTCTIME_set(ASN1_UTCTIME *s,time_t t); ASN1_UTCTIME *ASN1_UTCTIME_adj(ASN1_UTCTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_UTCTIME_set_string(ASN1_UTCTIME *s, const char *str); int ASN1_UTCTIME_cmp_time_t(const ASN1_UTCTIME *s, time_t t); int ASN1_GENERALIZEDTIME_check(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_set(ASN1_GENERALIZEDTIME *s,time_t t); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_adj(ASN1_GENERALIZEDTIME *s, time_t t, int offset_day, long offset_sec); int ASN1_GENERALIZEDTIME_set_string(ASN1_GENERALIZEDTIME *s, const char *str); ASN1_OCTET_STRING *ASN1_OCTET_STRING_new(void); void ASN1_OCTET_STRING_free(ASN1_OCTET_STRING *a); ASN1_OCTET_STRING *d2i_ASN1_OCTET_STRING(ASN1_OCTET_STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_OCTET_STRING(ASN1_OCTET_STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_OCTET_STRING_it; ASN1_OCTET_STRING * ASN1_OCTET_STRING_dup(const ASN1_OCTET_STRING *a); int ASN1_OCTET_STRING_cmp(const ASN1_OCTET_STRING *a, const ASN1_OCTET_STRING *b); int ASN1_OCTET_STRING_set(ASN1_OCTET_STRING *str, const unsigned char *data, int len); ASN1_VISIBLESTRING *ASN1_VISIBLESTRING_new(void); void ASN1_VISIBLESTRING_free(ASN1_VISIBLESTRING *a); ASN1_VISIBLESTRING *d2i_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING * *a, const unsigned char * *in, long len); int i2d_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_VISIBLESTRING_it; ASN1_UNIVERSALSTRING *ASN1_UNIVERSALSTRING_new(void); void ASN1_UNIVERSALSTRING_free(ASN1_UNIVERSALSTRING *a); ASN1_UNIVERSALSTRING *d2i_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING * *a, const unsigned char * *in, long len); int i2d_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_UNIVERSALSTRING_it; ASN1_UTF8STRING *ASN1_UTF8STRING_new(void); void ASN1_UTF8STRING_free(ASN1_UTF8STRING *a); ASN1_UTF8STRING *d2i_ASN1_UTF8STRING(ASN1_UTF8STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_UTF8STRING(ASN1_UTF8STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_UTF8STRING_it; ASN1_NULL *ASN1_NULL_new(void); void ASN1_NULL_free(ASN1_NULL *a); ASN1_NULL *d2i_ASN1_NULL(ASN1_NULL * *a, const unsigned char * *in, long len); int i2d_ASN1_NULL(ASN1_NULL *a, unsigned char * *out); extern const ASN1_ITEM ASN1_NULL_it; ASN1_BMPSTRING *ASN1_BMPSTRING_new(void); void ASN1_BMPSTRING_free(ASN1_BMPSTRING *a); ASN1_BMPSTRING *d2i_ASN1_BMPSTRING(ASN1_BMPSTRING * *a, const unsigned char * *in, long len); int i2d_ASN1_BMPSTRING(ASN1_BMPSTRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_BMPSTRING_it; int UTF8_getc(const unsigned char *str, int len, unsigned long *val); int UTF8_putc(unsigned char *str, int len, unsigned long value); ASN1_STRING *ASN1_PRINTABLE_new(void); void ASN1_PRINTABLE_free(ASN1_STRING *a); ASN1_STRING *d2i_ASN1_PRINTABLE(ASN1_STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_PRINTABLE(ASN1_STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_PRINTABLE_it; ASN1_STRING *DIRECTORYSTRING_new(void); void DIRECTORYSTRING_free(ASN1_STRING *a); ASN1_STRING *d2i_DIRECTORYSTRING(ASN1_STRING * *a, const unsigned char * *in, long len); int i2d_DIRECTORYSTRING(ASN1_STRING *a, unsigned char * *out); extern const ASN1_ITEM DIRECTORYSTRING_it; ASN1_STRING *DISPLAYTEXT_new(void); void DISPLAYTEXT_free(ASN1_STRING *a); ASN1_STRING *d2i_DISPLAYTEXT(ASN1_STRING * *a, const unsigned char * *in, long len); int i2d_DISPLAYTEXT(ASN1_STRING *a, unsigned char * *out); extern const ASN1_ITEM DISPLAYTEXT_it; ASN1_PRINTABLESTRING *ASN1_PRINTABLESTRING_new(void); void ASN1_PRINTABLESTRING_free(ASN1_PRINTABLESTRING *a); ASN1_PRINTABLESTRING *d2i_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING * *a, const unsigned char * *in, long len); int i2d_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_PRINTABLESTRING_it; ASN1_T61STRING *ASN1_T61STRING_new(void); void ASN1_T61STRING_free(ASN1_T61STRING *a); ASN1_T61STRING *d2i_ASN1_T61STRING(ASN1_T61STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_T61STRING(ASN1_T61STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_T61STRING_it; ASN1_IA5STRING *ASN1_IA5STRING_new(void); void ASN1_IA5STRING_free(ASN1_IA5STRING *a); ASN1_IA5STRING *d2i_ASN1_IA5STRING(ASN1_IA5STRING * *a, const unsigned char * *in, long len); int i2d_ASN1_IA5STRING(ASN1_IA5STRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_IA5STRING_it; ASN1_GENERALSTRING *ASN1_GENERALSTRING_new(void); void ASN1_GENERALSTRING_free(ASN1_GENERALSTRING *a); ASN1_GENERALSTRING *d2i_ASN1_GENERALSTRING(ASN1_GENERALSTRING * *a, const unsigned char * *in, long len); int i2d_ASN1_GENERALSTRING(ASN1_GENERALSTRING *a, unsigned char * *out); extern const ASN1_ITEM ASN1_GENERALSTRING_it; ASN1_UTCTIME *ASN1_UTCTIME_new(void); void ASN1_UTCTIME_free(ASN1_UTCTIME *a); ASN1_UTCTIME *d2i_ASN1_UTCTIME(ASN1_UTCTIME * *a, const unsigned char * *in, long len); int i2d_ASN1_UTCTIME(ASN1_UTCTIME *a, unsigned char * *out); extern const ASN1_ITEM ASN1_UTCTIME_it; ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_new(void); void ASN1_GENERALIZEDTIME_free(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *d2i_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME * *a, const unsigned char * *in, long len); int i2d_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME *a, unsigned char * *out); extern const ASN1_ITEM ASN1_GENERALIZEDTIME_it; ASN1_TIME *ASN1_TIME_new(void); void ASN1_TIME_free(ASN1_TIME *a); ASN1_TIME *d2i_ASN1_TIME(ASN1_TIME * *a, const unsigned char * *in, long len); int i2d_ASN1_TIME(ASN1_TIME *a, unsigned char * *out); extern const ASN1_ITEM ASN1_TIME_it; extern const ASN1_ITEM ASN1_OCTET_STRING_NDEF_it; ASN1_TIME *ASN1_TIME_set(ASN1_TIME *s,time_t t); ASN1_TIME *ASN1_TIME_adj(ASN1_TIME *s,time_t t, int offset_day, long offset_sec); int ASN1_TIME_check(ASN1_TIME *t); ASN1_GENERALIZEDTIME *ASN1_TIME_to_generalizedtime(ASN1_TIME *t, ASN1_GENERALIZEDTIME **out); int ASN1_TIME_set_string(ASN1_TIME *s, const char *str); int i2d_ASN1_SET(struct stack_st_OPENSSL_BLOCK *a, unsigned char **pp, i2d_of_void *i2d, int ex_tag, int ex_class, int is_set); struct stack_st_OPENSSL_BLOCK *d2i_ASN1_SET(struct stack_st_OPENSSL_BLOCK **a, const unsigned char **pp, long length, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK), int ex_tag, int ex_class); int i2a_ASN1_INTEGER(BIO *bp, ASN1_INTEGER *a); int a2i_ASN1_INTEGER(BIO *bp,ASN1_INTEGER *bs,char *buf,int size); int i2a_ASN1_ENUMERATED(BIO *bp, ASN1_ENUMERATED *a); int a2i_ASN1_ENUMERATED(BIO *bp,ASN1_ENUMERATED *bs,char *buf,int size); int i2a_ASN1_OBJECT(BIO *bp,ASN1_OBJECT *a); int a2i_ASN1_STRING(BIO *bp,ASN1_STRING *bs,char *buf,int size); int i2a_ASN1_STRING(BIO *bp, ASN1_STRING *a, int type); int i2t_ASN1_OBJECT(char *buf,int buf_len,ASN1_OBJECT *a); int a2d_ASN1_OBJECT(unsigned char *out,int olen, const char *buf, int num); ASN1_OBJECT *ASN1_OBJECT_create(int nid, unsigned char *data,int len, const char *sn, const char *ln); int ASN1_INTEGER_set(ASN1_INTEGER *a, long v); long ASN1_INTEGER_get(const ASN1_INTEGER *a); ASN1_INTEGER *BN_to_ASN1_INTEGER(const BIGNUM *bn, ASN1_INTEGER *ai); BIGNUM *ASN1_INTEGER_to_BN(const ASN1_INTEGER *ai,BIGNUM *bn); int ASN1_ENUMERATED_set(ASN1_ENUMERATED *a, long v); long ASN1_ENUMERATED_get(ASN1_ENUMERATED *a); ASN1_ENUMERATED *BN_to_ASN1_ENUMERATED(BIGNUM *bn, ASN1_ENUMERATED *ai); BIGNUM *ASN1_ENUMERATED_to_BN(ASN1_ENUMERATED *ai,BIGNUM *bn); int ASN1_PRINTABLE_type(const unsigned char *s, int max); int i2d_ASN1_bytes(ASN1_STRING *a, unsigned char **pp, int tag, int xclass); ASN1_STRING *d2i_ASN1_bytes(ASN1_STRING **a, const unsigned char **pp, long length, int Ptag, int Pclass); unsigned long ASN1_tag2bit(int tag); ASN1_STRING *d2i_ASN1_type_bytes(ASN1_STRING **a,const unsigned char **pp, long length,int type); int asn1_Finish(ASN1_CTX *c); int asn1_const_Finish(ASN1_const_CTX *c); int ASN1_get_object(const unsigned char **pp, long *plength, int *ptag, int *pclass, long omax); int ASN1_check_infinite_end(unsigned char **p,long len); int ASN1_const_check_infinite_end(const unsigned char **p,long len); void ASN1_put_object(unsigned char **pp, int constructed, int length, int tag, int xclass); int ASN1_put_eoc(unsigned char **pp); int ASN1_object_size(int constructed, int length, int tag); void *ASN1_dup(i2d_of_void *i2d, d2i_of_void *d2i, void *x); void *ASN1_item_dup(const ASN1_ITEM *it, void *x); void *ASN1_d2i_fp(void *(*xnew)(void), d2i_of_void *d2i, FILE *in, void **x); void *ASN1_item_d2i_fp(const ASN1_ITEM *it, FILE *in, void *x); int ASN1_i2d_fp(i2d_of_void *i2d,FILE *out,void *x); int ASN1_item_i2d_fp(const ASN1_ITEM *it, FILE *out, void *x); int ASN1_STRING_print_ex_fp(FILE *fp, ASN1_STRING *str, unsigned long flags); int ASN1_STRING_to_UTF8(unsigned char **out, ASN1_STRING *in); void *ASN1_d2i_bio(void *(*xnew)(void), d2i_of_void *d2i, BIO *in, void **x); void *ASN1_item_d2i_bio(const ASN1_ITEM *it, BIO *in, void *x); int ASN1_i2d_bio(i2d_of_void *i2d,BIO *out, unsigned char *x); int ASN1_item_i2d_bio(const ASN1_ITEM *it, BIO *out, void *x); int ASN1_UTCTIME_print(BIO *fp, const ASN1_UTCTIME *a); int ASN1_GENERALIZEDTIME_print(BIO *fp, const ASN1_GENERALIZEDTIME *a); int ASN1_TIME_print(BIO *fp, const ASN1_TIME *a); int ASN1_STRING_print(BIO *bp, const ASN1_STRING *v); int ASN1_STRING_print_ex(BIO *out, ASN1_STRING *str, unsigned long flags); int ASN1_bn_print(BIO *bp, const char *number, const BIGNUM *num, unsigned char *buf, int off); int ASN1_parse(BIO *bp,const unsigned char *pp,long len,int indent); int ASN1_parse_dump(BIO *bp,const unsigned char *pp,long len,int indent,int dump); const char *ASN1_tag2str(int tag); NETSCAPE_X509 *NETSCAPE_X509_new(void); void NETSCAPE_X509_free(NETSCAPE_X509 *a); NETSCAPE_X509 *d2i_NETSCAPE_X509(NETSCAPE_X509 * *a, const unsigned char * *in, long len); int i2d_NETSCAPE_X509(NETSCAPE_X509 *a, unsigned char * *out); extern const ASN1_ITEM NETSCAPE_X509_it; int ASN1_UNIVERSALSTRING_to_string(ASN1_UNIVERSALSTRING *s); int ASN1_TYPE_set_octetstring(ASN1_TYPE *a, unsigned char *data, int len); int ASN1_TYPE_get_octetstring(ASN1_TYPE *a, unsigned char *data, int max_len); int ASN1_TYPE_set_int_octetstring(ASN1_TYPE *a, long num, unsigned char *data, int len); int ASN1_TYPE_get_int_octetstring(ASN1_TYPE *a,long *num, unsigned char *data, int max_len); struct stack_st_OPENSSL_BLOCK *ASN1_seq_unpack(const unsigned char *buf, int len, d2i_of_void *d2i, void (*free_func)(OPENSSL_BLOCK)); unsigned char *ASN1_seq_pack(struct stack_st_OPENSSL_BLOCK *safes, i2d_of_void *i2d, unsigned char **buf, int *len ); void *ASN1_unpack_string(ASN1_STRING *oct, d2i_of_void *d2i); void *ASN1_item_unpack(ASN1_STRING *oct, const ASN1_ITEM *it); ASN1_STRING *ASN1_pack_string(void *obj, i2d_of_void *i2d, ASN1_OCTET_STRING **oct); ASN1_STRING *ASN1_item_pack(void *obj, const ASN1_ITEM *it, ASN1_OCTET_STRING **oct); void ASN1_STRING_set_default_mask(unsigned long mask); int ASN1_STRING_set_default_mask_asc(const char *p); unsigned long ASN1_STRING_get_default_mask(void); int ASN1_mbstring_copy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask); int ASN1_mbstring_ncopy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask, long minsize, long maxsize); ASN1_STRING *ASN1_STRING_set_by_NID(ASN1_STRING **out, const unsigned char *in, int inlen, int inform, int nid); ASN1_STRING_TABLE *ASN1_STRING_TABLE_get(int nid); int ASN1_STRING_TABLE_add(int, long, long, unsigned long, unsigned long); void ASN1_STRING_TABLE_cleanup(void); ASN1_VALUE *ASN1_item_new(const ASN1_ITEM *it); void ASN1_item_free(ASN1_VALUE *val, const ASN1_ITEM *it); ASN1_VALUE * ASN1_item_d2i(ASN1_VALUE **val, const unsigned char **in, long len, const ASN1_ITEM *it); int ASN1_item_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); int ASN1_item_ndef_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it); void ASN1_add_oid_module(void); ASN1_TYPE *ASN1_generate_nconf(char *str, CONF *nconf); ASN1_TYPE *ASN1_generate_v3(char *str, X509V3_CTX *cnf); int ASN1_item_print(BIO *out, ASN1_VALUE *ifld, int indent, const ASN1_ITEM *it, const ASN1_PCTX *pctx); ASN1_PCTX *ASN1_PCTX_new(void); void ASN1_PCTX_free(ASN1_PCTX *p); unsigned long ASN1_PCTX_get_flags(ASN1_PCTX *p); void ASN1_PCTX_set_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_nm_flags(ASN1_PCTX *p); void ASN1_PCTX_set_nm_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_cert_flags(ASN1_PCTX *p); void ASN1_PCTX_set_cert_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_oid_flags(ASN1_PCTX *p); void ASN1_PCTX_set_oid_flags(ASN1_PCTX *p, unsigned long flags); unsigned long ASN1_PCTX_get_str_flags(ASN1_PCTX *p); void ASN1_PCTX_set_str_flags(ASN1_PCTX *p, unsigned long flags); BIO_METHOD *BIO_f_asn1(void); BIO *BIO_new_NDEF(BIO *out, ASN1_VALUE *val, const ASN1_ITEM *it); int i2d_ASN1_bio_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const ASN1_ITEM *it); int PEM_write_bio_ASN1_stream(BIO *out, ASN1_VALUE *val, BIO *in, int flags, const char *hdr, const ASN1_ITEM *it); int SMIME_write_ASN1(BIO *bio, ASN1_VALUE *val, BIO *data, int flags, int ctype_nid, int econt_nid, struct stack_st_X509_ALGOR *mdalgs, const ASN1_ITEM *it); ASN1_VALUE *SMIME_read_ASN1(BIO *bio, BIO **bcont, const ASN1_ITEM *it); int SMIME_crlf_copy(BIO *in, BIO *out, int flags); int SMIME_text(BIO *in, BIO *out); void ERR_load_ASN1_strings(void); # 1280 "/glade/apps/opt/usr/include/openssl/asn1.h" # 1400 "/glade/apps/opt/usr/include/openssl/asn1.h" } # 961 "/glade/apps/opt/usr/include/openssl/objects.h" 2 # 968 "/glade/apps/opt/usr/include/openssl/objects.h" extern "C" { typedef struct obj_name_st { int type; int alias; const char *name; const char *data; } OBJ_NAME; int OBJ_NAME_init(void); int OBJ_NAME_new_index(unsigned long (*hash_func)(const char *), int (*cmp_func)(const char *, const char *), void (*free_func)(const char *, int, const char *)); const char *OBJ_NAME_get(const char *name,int type); int OBJ_NAME_add(const char *name,int type,const char *data); int OBJ_NAME_remove(const char *name,int type); void OBJ_NAME_cleanup(int type); void OBJ_NAME_do_all(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); void OBJ_NAME_do_all_sorted(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg); ASN1_OBJECT * OBJ_dup(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_nid2obj(int n); const char * OBJ_nid2ln(int n); const char * OBJ_nid2sn(int n); int OBJ_obj2nid(const ASN1_OBJECT *o); ASN1_OBJECT * OBJ_txt2obj(const char *s, int no_name); int OBJ_obj2txt(char *buf, int buf_len, const ASN1_OBJECT *a, int no_name); int OBJ_txt2nid(const char *s); int OBJ_ln2nid(const char *s); int OBJ_sn2nid(const char *s); int OBJ_cmp(const ASN1_OBJECT *a,const ASN1_OBJECT *b); const void * OBJ_bsearch_(const void *key,const void *base,int num,int size, int (*cmp)(const void *, const void *)); const void * OBJ_bsearch_ex_(const void *key,const void *base,int num, int size, int (*cmp)(const void *, const void *), int flags); # 1071 "/glade/apps/opt/usr/include/openssl/objects.h" # 1085 "/glade/apps/opt/usr/include/openssl/objects.h" # 1092 "/glade/apps/opt/usr/include/openssl/objects.h" # 1099 "/glade/apps/opt/usr/include/openssl/objects.h" int OBJ_new_nid(int num); int OBJ_add_object(const ASN1_OBJECT *obj); int OBJ_create(const char *oid,const char *sn,const char *ln); void OBJ_cleanup(void ); int OBJ_create_objects(BIO *in); int OBJ_find_sigid_algs(int signid, int *pdig_nid, int *ppkey_nid); int OBJ_find_sigid_by_algs(int *psignid, int dig_nid, int pkey_nid); int OBJ_add_sigid(int signid, int dig_id, int pkey_id); void OBJ_sigid_free(void); extern int obj_cleanup_defer; void check_defer(int nid); void ERR_load_OBJ_strings(void); # 1130 "/glade/apps/opt/usr/include/openssl/objects.h" } # 95 "/glade/apps/opt/usr/include/openssl/evp.h" 2 # 107 "/glade/apps/opt/usr/include/openssl/evp.h" # 120 "/glade/apps/opt/usr/include/openssl/evp.h" extern "C" { struct evp_pkey_st { int type; int save_type; int references; const EVP_PKEY_ASN1_METHOD *ameth; ENGINE *engine; union { char *ptr; struct rsa_st *rsa; struct dsa_st *dsa; struct dh_st *dh; struct ec_key_st *ec; } pkey; int save_parameters; struct stack_st_X509_ATTRIBUTE *attributes; } ; struct env_md_st { int type; int pkey_type; int md_size; unsigned long flags; int (*init)(EVP_MD_CTX *ctx); int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); int (*final)(EVP_MD_CTX *ctx,unsigned char *md); int (*copy)(EVP_MD_CTX *to,const EVP_MD_CTX *from); int (*cleanup)(EVP_MD_CTX *ctx); int (*sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, void *key); int (*verify)(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, void *key); int required_pkey_type[5]; int block_size; int ctx_size; int (*md_ctrl)(EVP_MD_CTX *ctx, int cmd, int p1, void *p2); } ; typedef int evp_sign_method(int type,const unsigned char *m, unsigned int m_length,unsigned char *sigret, unsigned int *siglen, void *key); typedef int evp_verify_method(int type,const unsigned char *m, unsigned int m_length,const unsigned char *sigbuf, unsigned int siglen, void *key); # 241 "/glade/apps/opt/usr/include/openssl/evp.h" # 249 "/glade/apps/opt/usr/include/openssl/evp.h" # 262 "/glade/apps/opt/usr/include/openssl/evp.h" struct env_md_ctx_st { const EVP_MD *digest; ENGINE *engine; unsigned long flags; void *md_data; EVP_PKEY_CTX *pctx; int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count); } ; # 285 "/glade/apps/opt/usr/include/openssl/evp.h" struct evp_cipher_st { int nid; int block_size; int key_len; int iv_len; unsigned long flags; int (*init)(EVP_CIPHER_CTX *ctx, const unsigned char *key, const unsigned char *iv, int enc); int (*do_cipher)(EVP_CIPHER_CTX *ctx, unsigned char *out, const unsigned char *in, size_t inl); int (*cleanup)(EVP_CIPHER_CTX *); int ctx_size; int (*set_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*get_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *); int (*ctrl)(EVP_CIPHER_CTX *, int type, int arg, void *ptr); void *app_data; } ; # 336 "/glade/apps/opt/usr/include/openssl/evp.h" # 387 "/glade/apps/opt/usr/include/openssl/evp.h" typedef struct evp_cipher_info_st { const EVP_CIPHER *cipher; unsigned char iv[16]; } EVP_CIPHER_INFO; struct evp_cipher_ctx_st { const EVP_CIPHER *cipher; ENGINE *engine; int encrypt; int buf_len; unsigned char oiv[16]; unsigned char iv[16]; unsigned char buf[32]; int num; void *app_data; int key_len; unsigned long flags; void *cipher_data; int final_used; int block_mask; unsigned char final[32]; } ; typedef struct evp_Encode_Ctx_st { int num; int length; unsigned char enc_data[80]; int line_num; int expect_nl; } EVP_ENCODE_CTX; typedef int (EVP_PBE_KEYGEN)(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); int EVP_MD_type(const EVP_MD *md); int EVP_MD_pkey_type(const EVP_MD *md); int EVP_MD_size(const EVP_MD *md); int EVP_MD_block_size(const EVP_MD *md); unsigned long EVP_MD_flags(const EVP_MD *md); const EVP_MD *EVP_MD_CTX_md(const EVP_MD_CTX *ctx); int EVP_CIPHER_nid(const EVP_CIPHER *cipher); int EVP_CIPHER_block_size(const EVP_CIPHER *cipher); int EVP_CIPHER_key_length(const EVP_CIPHER *cipher); int EVP_CIPHER_iv_length(const EVP_CIPHER *cipher); unsigned long EVP_CIPHER_flags(const EVP_CIPHER *cipher); const EVP_CIPHER * EVP_CIPHER_CTX_cipher(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_nid(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_block_size(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_key_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_iv_length(const EVP_CIPHER_CTX *ctx); int EVP_CIPHER_CTX_copy(EVP_CIPHER_CTX *out, const EVP_CIPHER_CTX *in); void * EVP_CIPHER_CTX_get_app_data(const EVP_CIPHER_CTX *ctx); void EVP_CIPHER_CTX_set_app_data(EVP_CIPHER_CTX *ctx, void *data); unsigned long EVP_CIPHER_CTX_flags(const EVP_CIPHER_CTX *ctx); # 522 "/glade/apps/opt/usr/include/openssl/evp.h" # 533 "/glade/apps/opt/usr/include/openssl/evp.h" int EVP_Cipher(EVP_CIPHER_CTX *c, unsigned char *out, const unsigned char *in, unsigned int inl); # 547 "/glade/apps/opt/usr/include/openssl/evp.h" void EVP_MD_CTX_init(EVP_MD_CTX *ctx); int EVP_MD_CTX_cleanup(EVP_MD_CTX *ctx); EVP_MD_CTX *EVP_MD_CTX_create(void); void EVP_MD_CTX_destroy(EVP_MD_CTX *ctx); int EVP_MD_CTX_copy_ex(EVP_MD_CTX *out,const EVP_MD_CTX *in); void EVP_MD_CTX_set_flags(EVP_MD_CTX *ctx, int flags); void EVP_MD_CTX_clear_flags(EVP_MD_CTX *ctx, int flags); int EVP_MD_CTX_test_flags(const EVP_MD_CTX *ctx,int flags); int EVP_DigestInit_ex(EVP_MD_CTX *ctx, const EVP_MD *type, ENGINE *impl); int EVP_DigestUpdate(EVP_MD_CTX *ctx,const void *d, size_t cnt); int EVP_DigestFinal_ex(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_Digest(const void *data, size_t count, unsigned char *md, unsigned int *size, const EVP_MD *type, ENGINE *impl); int EVP_MD_CTX_copy(EVP_MD_CTX *out,const EVP_MD_CTX *in); int EVP_DigestInit(EVP_MD_CTX *ctx, const EVP_MD *type); int EVP_DigestFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s); int EVP_read_pw_string(char *buf,int length,const char *prompt,int verify); int EVP_read_pw_string_min(char *buf,int minlen,int maxlen,const char *prompt,int verify); void EVP_set_pw_prompt(const char *prompt); char * EVP_get_pw_prompt(void); int EVP_BytesToKey(const EVP_CIPHER *type,const EVP_MD *md, const unsigned char *salt, const unsigned char *data, int datal, int count, unsigned char *key,unsigned char *iv); void EVP_CIPHER_CTX_set_flags(EVP_CIPHER_CTX *ctx, int flags); void EVP_CIPHER_CTX_clear_flags(EVP_CIPHER_CTX *ctx, int flags); int EVP_CIPHER_CTX_test_flags(const EVP_CIPHER_CTX *ctx,int flags); int EVP_EncryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_EncryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_EncryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_EncryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_EncryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_DecryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv); int EVP_DecryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv); int EVP_DecryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_DecryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_DecryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key,const unsigned char *iv, int enc); int EVP_CipherUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl); int EVP_CipherFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_CipherFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl); int EVP_SignFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s, EVP_PKEY *pkey); int EVP_VerifyFinal(EVP_MD_CTX *ctx,const unsigned char *sigbuf, unsigned int siglen,EVP_PKEY *pkey); int EVP_DigestSignInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestSignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, size_t *siglen); int EVP_DigestVerifyInit(EVP_MD_CTX *ctx, EVP_PKEY_CTX **pctx, const EVP_MD *type, ENGINE *e, EVP_PKEY *pkey); int EVP_DigestVerifyFinal(EVP_MD_CTX *ctx, unsigned char *sig, size_t siglen); int EVP_OpenInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *type, const unsigned char *ek, int ekl, const unsigned char *iv, EVP_PKEY *priv); int EVP_OpenFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl); int EVP_SealInit(EVP_CIPHER_CTX *ctx, const EVP_CIPHER *type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); int EVP_SealFinal(EVP_CIPHER_CTX *ctx,unsigned char *out,int *outl); void EVP_EncodeInit(EVP_ENCODE_CTX *ctx); void EVP_EncodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in,int inl); void EVP_EncodeFinal(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl); int EVP_EncodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_DecodeInit(EVP_ENCODE_CTX *ctx); int EVP_DecodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in, int inl); int EVP_DecodeFinal(EVP_ENCODE_CTX *ctx, unsigned char *out, int *outl); int EVP_DecodeBlock(unsigned char *t, const unsigned char *f, int n); void EVP_CIPHER_CTX_init(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_cleanup(EVP_CIPHER_CTX *a); EVP_CIPHER_CTX *EVP_CIPHER_CTX_new(void); void EVP_CIPHER_CTX_free(EVP_CIPHER_CTX *a); int EVP_CIPHER_CTX_set_key_length(EVP_CIPHER_CTX *x, int keylen); int EVP_CIPHER_CTX_set_padding(EVP_CIPHER_CTX *c, int pad); int EVP_CIPHER_CTX_ctrl(EVP_CIPHER_CTX *ctx, int type, int arg, void *ptr); int EVP_CIPHER_CTX_rand_key(EVP_CIPHER_CTX *ctx, unsigned char *key); BIO_METHOD *BIO_f_md(void); BIO_METHOD *BIO_f_base64(void); BIO_METHOD *BIO_f_cipher(void); BIO_METHOD *BIO_f_reliable(void); void BIO_set_cipher(BIO *b,const EVP_CIPHER *c,const unsigned char *k, const unsigned char *i, int enc); const EVP_MD *EVP_md_null(void); const EVP_MD *EVP_md4(void); const EVP_MD *EVP_md5(void); const EVP_MD *EVP_sha(void); const EVP_MD *EVP_sha1(void); const EVP_MD *EVP_dss(void); const EVP_MD *EVP_dss1(void); const EVP_MD *EVP_ecdsa(void); const EVP_MD *EVP_sha224(void); const EVP_MD *EVP_sha256(void); const EVP_MD *EVP_sha384(void); const EVP_MD *EVP_sha512(void); const EVP_MD *EVP_mdc2(void); const EVP_MD *EVP_ripemd160(void); const EVP_MD *EVP_whirlpool(void); const EVP_CIPHER *EVP_enc_null(void); const EVP_CIPHER *EVP_des_ecb(void); const EVP_CIPHER *EVP_des_ede(void); const EVP_CIPHER *EVP_des_ede3(void); const EVP_CIPHER *EVP_des_ede_ecb(void); const EVP_CIPHER *EVP_des_ede3_ecb(void); const EVP_CIPHER *EVP_des_cfb64(void); const EVP_CIPHER *EVP_des_cfb1(void); const EVP_CIPHER *EVP_des_cfb8(void); const EVP_CIPHER *EVP_des_ede_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb64(void); const EVP_CIPHER *EVP_des_ede3_cfb1(void); const EVP_CIPHER *EVP_des_ede3_cfb8(void); const EVP_CIPHER *EVP_des_ofb(void); const EVP_CIPHER *EVP_des_ede_ofb(void); const EVP_CIPHER *EVP_des_ede3_ofb(void); const EVP_CIPHER *EVP_des_cbc(void); const EVP_CIPHER *EVP_des_ede_cbc(void); const EVP_CIPHER *EVP_des_ede3_cbc(void); const EVP_CIPHER *EVP_desx_cbc(void); # 739 "/glade/apps/opt/usr/include/openssl/evp.h" const EVP_CIPHER *EVP_rc4(void); const EVP_CIPHER *EVP_rc4_40(void); const EVP_CIPHER *EVP_rc4_hmac_md5(void); const EVP_CIPHER *EVP_idea_ecb(void); const EVP_CIPHER *EVP_idea_cfb64(void); const EVP_CIPHER *EVP_idea_ofb(void); const EVP_CIPHER *EVP_idea_cbc(void); const EVP_CIPHER *EVP_rc2_ecb(void); const EVP_CIPHER *EVP_rc2_cbc(void); const EVP_CIPHER *EVP_rc2_40_cbc(void); const EVP_CIPHER *EVP_rc2_64_cbc(void); const EVP_CIPHER *EVP_rc2_cfb64(void); const EVP_CIPHER *EVP_rc2_ofb(void); const EVP_CIPHER *EVP_bf_ecb(void); const EVP_CIPHER *EVP_bf_cbc(void); const EVP_CIPHER *EVP_bf_cfb64(void); const EVP_CIPHER *EVP_bf_ofb(void); const EVP_CIPHER *EVP_cast5_ecb(void); const EVP_CIPHER *EVP_cast5_cbc(void); const EVP_CIPHER *EVP_cast5_cfb64(void); const EVP_CIPHER *EVP_cast5_ofb(void); # 783 "/glade/apps/opt/usr/include/openssl/evp.h" const EVP_CIPHER *EVP_aes_128_ecb(void); const EVP_CIPHER *EVP_aes_128_cbc(void); const EVP_CIPHER *EVP_aes_128_cfb1(void); const EVP_CIPHER *EVP_aes_128_cfb8(void); const EVP_CIPHER *EVP_aes_128_cfb128(void); const EVP_CIPHER *EVP_aes_128_ofb(void); const EVP_CIPHER *EVP_aes_128_ctr(void); const EVP_CIPHER *EVP_aes_128_ccm(void); const EVP_CIPHER *EVP_aes_128_gcm(void); const EVP_CIPHER *EVP_aes_128_xts(void); const EVP_CIPHER *EVP_aes_192_ecb(void); const EVP_CIPHER *EVP_aes_192_cbc(void); const EVP_CIPHER *EVP_aes_192_cfb1(void); const EVP_CIPHER *EVP_aes_192_cfb8(void); const EVP_CIPHER *EVP_aes_192_cfb128(void); const EVP_CIPHER *EVP_aes_192_ofb(void); const EVP_CIPHER *EVP_aes_192_ctr(void); const EVP_CIPHER *EVP_aes_192_ccm(void); const EVP_CIPHER *EVP_aes_192_gcm(void); const EVP_CIPHER *EVP_aes_256_ecb(void); const EVP_CIPHER *EVP_aes_256_cbc(void); const EVP_CIPHER *EVP_aes_256_cfb1(void); const EVP_CIPHER *EVP_aes_256_cfb8(void); const EVP_CIPHER *EVP_aes_256_cfb128(void); const EVP_CIPHER *EVP_aes_256_ofb(void); const EVP_CIPHER *EVP_aes_256_ctr(void); const EVP_CIPHER *EVP_aes_256_ccm(void); const EVP_CIPHER *EVP_aes_256_gcm(void); const EVP_CIPHER *EVP_aes_256_xts(void); const EVP_CIPHER *EVP_aes_128_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_aes_256_cbc_hmac_sha1(void); const EVP_CIPHER *EVP_camellia_128_ecb(void); const EVP_CIPHER *EVP_camellia_128_cbc(void); const EVP_CIPHER *EVP_camellia_128_cfb1(void); const EVP_CIPHER *EVP_camellia_128_cfb8(void); const EVP_CIPHER *EVP_camellia_128_cfb128(void); const EVP_CIPHER *EVP_camellia_128_ofb(void); const EVP_CIPHER *EVP_camellia_192_ecb(void); const EVP_CIPHER *EVP_camellia_192_cbc(void); const EVP_CIPHER *EVP_camellia_192_cfb1(void); const EVP_CIPHER *EVP_camellia_192_cfb8(void); const EVP_CIPHER *EVP_camellia_192_cfb128(void); const EVP_CIPHER *EVP_camellia_192_ofb(void); const EVP_CIPHER *EVP_camellia_256_ecb(void); const EVP_CIPHER *EVP_camellia_256_cbc(void); const EVP_CIPHER *EVP_camellia_256_cfb1(void); const EVP_CIPHER *EVP_camellia_256_cfb8(void); const EVP_CIPHER *EVP_camellia_256_cfb128(void); const EVP_CIPHER *EVP_camellia_256_ofb(void); const EVP_CIPHER *EVP_seed_ecb(void); const EVP_CIPHER *EVP_seed_cbc(void); const EVP_CIPHER *EVP_seed_cfb128(void); const EVP_CIPHER *EVP_seed_ofb(void); void OPENSSL_add_all_algorithms_noconf(void); void OPENSSL_add_all_algorithms_conf(void); # 862 "/glade/apps/opt/usr/include/openssl/evp.h" void OpenSSL_add_all_ciphers(void); void OpenSSL_add_all_digests(void); int EVP_add_cipher(const EVP_CIPHER *cipher); int EVP_add_digest(const EVP_MD *digest); const EVP_CIPHER *EVP_get_cipherbyname(const char *name); const EVP_MD *EVP_get_digestbyname(const char *name); void EVP_cleanup(void); void EVP_CIPHER_do_all(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_CIPHER_do_all_sorted(void (*fn)(const EVP_CIPHER *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); void EVP_MD_do_all_sorted(void (*fn)(const EVP_MD *ciph, const char *from, const char *to, void *x), void *arg); int EVP_PKEY_decrypt_old(unsigned char *dec_key, const unsigned char *enc_key,int enc_key_len, EVP_PKEY *private_key); int EVP_PKEY_encrypt_old(unsigned char *enc_key, const unsigned char *key,int key_len, EVP_PKEY *pub_key); int EVP_PKEY_type(int type); int EVP_PKEY_id(const EVP_PKEY *pkey); int EVP_PKEY_base_id(const EVP_PKEY *pkey); int EVP_PKEY_bits(EVP_PKEY *pkey); int EVP_PKEY_size(EVP_PKEY *pkey); int EVP_PKEY_set_type(EVP_PKEY *pkey,int type); int EVP_PKEY_set_type_str(EVP_PKEY *pkey, const char *str, int len); int EVP_PKEY_assign(EVP_PKEY *pkey,int type,void *key); void * EVP_PKEY_get0(EVP_PKEY *pkey); struct rsa_st; int EVP_PKEY_set1_RSA(EVP_PKEY *pkey,struct rsa_st *key); struct rsa_st *EVP_PKEY_get1_RSA(EVP_PKEY *pkey); struct dsa_st; int EVP_PKEY_set1_DSA(EVP_PKEY *pkey,struct dsa_st *key); struct dsa_st *EVP_PKEY_get1_DSA(EVP_PKEY *pkey); struct dh_st; int EVP_PKEY_set1_DH(EVP_PKEY *pkey,struct dh_st *key); struct dh_st *EVP_PKEY_get1_DH(EVP_PKEY *pkey); struct ec_key_st; int EVP_PKEY_set1_EC_KEY(EVP_PKEY *pkey,struct ec_key_st *key); struct ec_key_st *EVP_PKEY_get1_EC_KEY(EVP_PKEY *pkey); EVP_PKEY * EVP_PKEY_new(void); void EVP_PKEY_free(EVP_PKEY *pkey); EVP_PKEY * d2i_PublicKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PublicKey(EVP_PKEY *a, unsigned char **pp); EVP_PKEY * d2i_PrivateKey(int type,EVP_PKEY **a, const unsigned char **pp, long length); EVP_PKEY * d2i_AutoPrivateKey(EVP_PKEY **a, const unsigned char **pp, long length); int i2d_PrivateKey(EVP_PKEY *a, unsigned char **pp); int EVP_PKEY_copy_parameters(EVP_PKEY *to, const EVP_PKEY *from); int EVP_PKEY_missing_parameters(const EVP_PKEY *pkey); int EVP_PKEY_save_parameters(EVP_PKEY *pkey,int mode); int EVP_PKEY_cmp_parameters(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_cmp(const EVP_PKEY *a, const EVP_PKEY *b); int EVP_PKEY_print_public(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_private(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_print_params(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx); int EVP_PKEY_get_default_digest_nid(EVP_PKEY *pkey, int *pnid); int EVP_CIPHER_type(const EVP_CIPHER *ctx); int EVP_CIPHER_param_to_asn1(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_asn1_to_param(EVP_CIPHER_CTX *c, ASN1_TYPE *type); int EVP_CIPHER_set_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int EVP_CIPHER_get_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type); int PKCS5_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); int PKCS5_PBKDF2_HMAC_SHA1(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, int keylen, unsigned char *out); int PKCS5_PBKDF2_HMAC(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, const EVP_MD *digest, int keylen, unsigned char *out); int PKCS5_v2_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); void PKCS5_PBE_add(void); int EVP_PBE_CipherInit (ASN1_OBJECT *pbe_obj, const char *pass, int passlen, ASN1_TYPE *param, EVP_CIPHER_CTX *ctx, int en_de); int EVP_PBE_alg_add_type(int pbe_type, int pbe_nid, int cipher_nid, int md_nid, EVP_PBE_KEYGEN *keygen); int EVP_PBE_alg_add(int nid, const EVP_CIPHER *cipher, const EVP_MD *md, EVP_PBE_KEYGEN *keygen); int EVP_PBE_find(int type, int pbe_nid, int *pcnid, int *pmnid, EVP_PBE_KEYGEN **pkeygen); void EVP_PBE_cleanup(void); int EVP_PKEY_asn1_get_count(void); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_get0(int idx); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find(ENGINE **pe, int type); const EVP_PKEY_ASN1_METHOD *EVP_PKEY_asn1_find_str(ENGINE **pe, const char *str, int len); int EVP_PKEY_asn1_add0(const EVP_PKEY_ASN1_METHOD *ameth); int EVP_PKEY_asn1_add_alias(int to, int from); int EVP_PKEY_asn1_get0_info(int *ppkey_id, int *pkey_base_id, int *ppkey_flags, const char **pinfo, const char **ppem_str, const EVP_PKEY_ASN1_METHOD *ameth); const EVP_PKEY_ASN1_METHOD* EVP_PKEY_get0_asn1(EVP_PKEY *pkey); EVP_PKEY_ASN1_METHOD* EVP_PKEY_asn1_new(int id, int flags, const char *pem_str, const char *info); void EVP_PKEY_asn1_copy(EVP_PKEY_ASN1_METHOD *dst, const EVP_PKEY_ASN1_METHOD *src); void EVP_PKEY_asn1_free(EVP_PKEY_ASN1_METHOD *ameth); void EVP_PKEY_asn1_set_public(EVP_PKEY_ASN1_METHOD *ameth, int (*pub_decode)(EVP_PKEY *pk, X509_PUBKEY *pub), int (*pub_encode)(X509_PUBKEY *pub, const EVP_PKEY *pk), int (*pub_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*pub_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx), int (*pkey_size)(const EVP_PKEY *pk), int (*pkey_bits)(const EVP_PKEY *pk)); void EVP_PKEY_asn1_set_private(EVP_PKEY_ASN1_METHOD *ameth, int (*priv_decode)(EVP_PKEY *pk, PKCS8_PRIV_KEY_INFO *p8inf), int (*priv_encode)(PKCS8_PRIV_KEY_INFO *p8, const EVP_PKEY *pk), int (*priv_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_param(EVP_PKEY_ASN1_METHOD *ameth, int (*param_decode)(EVP_PKEY *pkey, const unsigned char **pder, int derlen), int (*param_encode)(const EVP_PKEY *pkey, unsigned char **pder), int (*param_missing)(const EVP_PKEY *pk), int (*param_copy)(EVP_PKEY *to, const EVP_PKEY *from), int (*param_cmp)(const EVP_PKEY *a, const EVP_PKEY *b), int (*param_print)(BIO *out, const EVP_PKEY *pkey, int indent, ASN1_PCTX *pctx)); void EVP_PKEY_asn1_set_free(EVP_PKEY_ASN1_METHOD *ameth, void (*pkey_free)(EVP_PKEY *pkey)); void EVP_PKEY_asn1_set_ctrl(EVP_PKEY_ASN1_METHOD *ameth, int (*pkey_ctrl)(EVP_PKEY *pkey, int op, long arg1, void *arg2)); # 1065 "/glade/apps/opt/usr/include/openssl/evp.h" const EVP_PKEY_METHOD *EVP_PKEY_meth_find(int type); EVP_PKEY_METHOD* EVP_PKEY_meth_new(int id, int flags); void EVP_PKEY_meth_get0_info(int *ppkey_id, int *pflags, const EVP_PKEY_METHOD *meth); void EVP_PKEY_meth_copy(EVP_PKEY_METHOD *dst, const EVP_PKEY_METHOD *src); void EVP_PKEY_meth_free(EVP_PKEY_METHOD *pmeth); int EVP_PKEY_meth_add0(const EVP_PKEY_METHOD *pmeth); EVP_PKEY_CTX *EVP_PKEY_CTX_new(EVP_PKEY *pkey, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_new_id(int id, ENGINE *e); EVP_PKEY_CTX *EVP_PKEY_CTX_dup(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_free(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_ctrl(EVP_PKEY_CTX *ctx, int keytype, int optype, int cmd, int p1, void *p2); int EVP_PKEY_CTX_ctrl_str(EVP_PKEY_CTX *ctx, const char *type, const char *value); int EVP_PKEY_CTX_get_operation(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set0_keygen_info(EVP_PKEY_CTX *ctx, int *dat, int datlen); EVP_PKEY *EVP_PKEY_new_mac_key(int type, ENGINE *e, const unsigned char *key, int keylen); void EVP_PKEY_CTX_set_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_data(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_pkey(EVP_PKEY_CTX *ctx); EVP_PKEY *EVP_PKEY_CTX_get0_peerkey(EVP_PKEY_CTX *ctx); void EVP_PKEY_CTX_set_app_data(EVP_PKEY_CTX *ctx, void *data); void *EVP_PKEY_CTX_get_app_data(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_sign(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen); int EVP_PKEY_verify_recover_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_verify_recover(EVP_PKEY_CTX *ctx, unsigned char *rout, size_t *routlen, const unsigned char *sig, size_t siglen); int EVP_PKEY_encrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_encrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_decrypt_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_decrypt(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen); int EVP_PKEY_derive_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_derive_set_peer(EVP_PKEY_CTX *ctx, EVP_PKEY *peer); int EVP_PKEY_derive(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen); typedef int EVP_PKEY_gen_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_paramgen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); int EVP_PKEY_keygen_init(EVP_PKEY_CTX *ctx); int EVP_PKEY_keygen(EVP_PKEY_CTX *ctx, EVP_PKEY **ppkey); void EVP_PKEY_CTX_set_cb(EVP_PKEY_CTX *ctx, EVP_PKEY_gen_cb *cb); EVP_PKEY_gen_cb *EVP_PKEY_CTX_get_cb(EVP_PKEY_CTX *ctx); int EVP_PKEY_CTX_get_keygen_info(EVP_PKEY_CTX *ctx, int idx); void EVP_PKEY_meth_set_init(EVP_PKEY_METHOD *pmeth, int (*init)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_copy(EVP_PKEY_METHOD *pmeth, int (*copy)(EVP_PKEY_CTX *dst, EVP_PKEY_CTX *src)); void EVP_PKEY_meth_set_cleanup(EVP_PKEY_METHOD *pmeth, void (*cleanup)(EVP_PKEY_CTX *ctx)); void EVP_PKEY_meth_set_paramgen(EVP_PKEY_METHOD *pmeth, int (*paramgen_init)(EVP_PKEY_CTX *ctx), int (*paramgen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_keygen(EVP_PKEY_METHOD *pmeth, int (*keygen_init)(EVP_PKEY_CTX *ctx), int (*keygen)(EVP_PKEY_CTX *ctx, EVP_PKEY *pkey)); void EVP_PKEY_meth_set_sign(EVP_PKEY_METHOD *pmeth, int (*sign_init)(EVP_PKEY_CTX *ctx), int (*sign)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify(EVP_PKEY_METHOD *pmeth, int (*verify_init)(EVP_PKEY_CTX *ctx), int (*verify)(EVP_PKEY_CTX *ctx, const unsigned char *sig, size_t siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_verify_recover(EVP_PKEY_METHOD *pmeth, int (*verify_recover_init)(EVP_PKEY_CTX *ctx), int (*verify_recover)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, const unsigned char *tbs, size_t tbslen)); void EVP_PKEY_meth_set_signctx(EVP_PKEY_METHOD *pmeth, int (*signctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*signctx)(EVP_PKEY_CTX *ctx, unsigned char *sig, size_t *siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_verifyctx(EVP_PKEY_METHOD *pmeth, int (*verifyctx_init)(EVP_PKEY_CTX *ctx, EVP_MD_CTX *mctx), int (*verifyctx)(EVP_PKEY_CTX *ctx, const unsigned char *sig,int siglen, EVP_MD_CTX *mctx)); void EVP_PKEY_meth_set_encrypt(EVP_PKEY_METHOD *pmeth, int (*encrypt_init)(EVP_PKEY_CTX *ctx), int (*encryptfn)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_decrypt(EVP_PKEY_METHOD *pmeth, int (*decrypt_init)(EVP_PKEY_CTX *ctx), int (*decrypt)(EVP_PKEY_CTX *ctx, unsigned char *out, size_t *outlen, const unsigned char *in, size_t inlen)); void EVP_PKEY_meth_set_derive(EVP_PKEY_METHOD *pmeth, int (*derive_init)(EVP_PKEY_CTX *ctx), int (*derive)(EVP_PKEY_CTX *ctx, unsigned char *key, size_t *keylen)); void EVP_PKEY_meth_set_ctrl(EVP_PKEY_METHOD *pmeth, int (*ctrl)(EVP_PKEY_CTX *ctx, int type, int p1, void *p2), int (*ctrl_str)(EVP_PKEY_CTX *ctx, const char *type, const char *value)); void EVP_add_alg_module(void); void ERR_load_EVP_strings(void); # 1333 "/glade/apps/opt/usr/include/openssl/evp.h" # 1405 "/glade/apps/opt/usr/include/openssl/evp.h" } # 74 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 81 "/glade/apps/opt/usr/include/openssl/x509.h" # 1 "/glade/apps/opt/usr/include/openssl/ec.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 80 "/glade/apps/opt/usr/include/openssl/ec.h" 2 extern "C" { typedef enum { POINT_CONVERSION_COMPRESSED = 2, POINT_CONVERSION_UNCOMPRESSED = 4, POINT_CONVERSION_HYBRID = 6 } point_conversion_form_t; typedef struct ec_method_st EC_METHOD; typedef struct ec_group_st EC_GROUP; typedef struct ec_point_st EC_POINT; const EC_METHOD *EC_GFp_simple_method(void); const EC_METHOD *EC_GFp_mont_method(void); const EC_METHOD *EC_GFp_nist_method(void); # 170 "/glade/apps/opt/usr/include/openssl/ec.h" const EC_METHOD *EC_GF2m_simple_method(void); EC_GROUP *EC_GROUP_new(const EC_METHOD *meth); void EC_GROUP_free(EC_GROUP *group); void EC_GROUP_clear_free(EC_GROUP *group); int EC_GROUP_copy(EC_GROUP *dst, const EC_GROUP *src); EC_GROUP *EC_GROUP_dup(const EC_GROUP *src); const EC_METHOD *EC_GROUP_method_of(const EC_GROUP *group); int EC_METHOD_get_field_type(const EC_METHOD *meth); int EC_GROUP_set_generator(EC_GROUP *group, const EC_POINT *generator, const BIGNUM *order, const BIGNUM *cofactor); const EC_POINT *EC_GROUP_get0_generator(const EC_GROUP *group); int EC_GROUP_get_order(const EC_GROUP *group, BIGNUM *order, BN_CTX *ctx); int EC_GROUP_get_cofactor(const EC_GROUP *group, BIGNUM *cofactor, BN_CTX *ctx); void EC_GROUP_set_curve_name(EC_GROUP *group, int nid); int EC_GROUP_get_curve_name(const EC_GROUP *group); void EC_GROUP_set_asn1_flag(EC_GROUP *group, int flag); int EC_GROUP_get_asn1_flag(const EC_GROUP *group); void EC_GROUP_set_point_conversion_form(EC_GROUP *group, point_conversion_form_t form); point_conversion_form_t EC_GROUP_get_point_conversion_form(const EC_GROUP *); unsigned char *EC_GROUP_get0_seed(const EC_GROUP *x); size_t EC_GROUP_get_seed_len(const EC_GROUP *); size_t EC_GROUP_set_seed(EC_GROUP *, const unsigned char *, size_t len); int EC_GROUP_set_curve_GFp(EC_GROUP *group, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int EC_GROUP_get_curve_GFp(const EC_GROUP *group, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *ctx); int EC_GROUP_set_curve_GF2m(EC_GROUP *group, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); int EC_GROUP_get_curve_GF2m(const EC_GROUP *group, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *ctx); int EC_GROUP_get_degree(const EC_GROUP *group); int EC_GROUP_check(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_check_discriminant(const EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_cmp(const EC_GROUP *a, const EC_GROUP *b, BN_CTX *ctx); EC_GROUP *EC_GROUP_new_curve_GFp(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); EC_GROUP *EC_GROUP_new_curve_GF2m(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx); EC_GROUP *EC_GROUP_new_by_curve_name(int nid); typedef struct { int nid; const char *comment; } EC_builtin_curve; size_t EC_get_builtin_curves(EC_builtin_curve *r, size_t nitems); EC_POINT *EC_POINT_new(const EC_GROUP *group); void EC_POINT_free(EC_POINT *point); void EC_POINT_clear_free(EC_POINT *point); int EC_POINT_copy(EC_POINT *dst, const EC_POINT *src); EC_POINT *EC_POINT_dup(const EC_POINT *src, const EC_GROUP *group); const EC_METHOD *EC_POINT_method_of(const EC_POINT *point); int EC_POINT_set_to_infinity(const EC_GROUP *group, EC_POINT *point); int EC_POINT_set_Jprojective_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, const BIGNUM *z, BN_CTX *ctx); int EC_POINT_get_Jprojective_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BIGNUM *z, BN_CTX *ctx); int EC_POINT_set_affine_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, BN_CTX *ctx); int EC_POINT_get_affine_coordinates_GFp(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BN_CTX *ctx); int EC_POINT_set_compressed_coordinates_GFp(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, int y_bit, BN_CTX *ctx); int EC_POINT_set_affine_coordinates_GF2m(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, const BIGNUM *y, BN_CTX *ctx); int EC_POINT_get_affine_coordinates_GF2m(const EC_GROUP *group, const EC_POINT *p, BIGNUM *x, BIGNUM *y, BN_CTX *ctx); int EC_POINT_set_compressed_coordinates_GF2m(const EC_GROUP *group, EC_POINT *p, const BIGNUM *x, int y_bit, BN_CTX *ctx); size_t EC_POINT_point2oct(const EC_GROUP *group, const EC_POINT *p, point_conversion_form_t form, unsigned char *buf, size_t len, BN_CTX *ctx); int EC_POINT_oct2point(const EC_GROUP *group, EC_POINT *p, const unsigned char *buf, size_t len, BN_CTX *ctx); BIGNUM *EC_POINT_point2bn(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BIGNUM *, BN_CTX *); EC_POINT *EC_POINT_bn2point(const EC_GROUP *, const BIGNUM *, EC_POINT *, BN_CTX *); char *EC_POINT_point2hex(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BN_CTX *); EC_POINT *EC_POINT_hex2point(const EC_GROUP *, const char *, EC_POINT *, BN_CTX *); int EC_POINT_add(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); int EC_POINT_dbl(const EC_GROUP *group, EC_POINT *r, const EC_POINT *a, BN_CTX *ctx); int EC_POINT_invert(const EC_GROUP *group, EC_POINT *a, BN_CTX *ctx); int EC_POINT_is_at_infinity(const EC_GROUP *group, const EC_POINT *p); int EC_POINT_is_on_curve(const EC_GROUP *group, const EC_POINT *point, BN_CTX *ctx); int EC_POINT_cmp(const EC_GROUP *group, const EC_POINT *a, const EC_POINT *b, BN_CTX *ctx); int EC_POINT_make_affine(const EC_GROUP *group, EC_POINT *point, BN_CTX *ctx); int EC_POINTs_make_affine(const EC_GROUP *group, size_t num, EC_POINT *points[], BN_CTX *ctx); int EC_POINTs_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, size_t num, const EC_POINT *p[], const BIGNUM *m[], BN_CTX *ctx); int EC_POINT_mul(const EC_GROUP *group, EC_POINT *r, const BIGNUM *n, const EC_POINT *q, const BIGNUM *m, BN_CTX *ctx); int EC_GROUP_precompute_mult(EC_GROUP *group, BN_CTX *ctx); int EC_GROUP_have_precompute_mult(const EC_GROUP *group); int EC_GROUP_get_basis_type(const EC_GROUP *); int EC_GROUP_get_trinomial_basis(const EC_GROUP *, unsigned int *k); int EC_GROUP_get_pentanomial_basis(const EC_GROUP *, unsigned int *k1, unsigned int *k2, unsigned int *k3); typedef struct ecpk_parameters_st ECPKPARAMETERS; EC_GROUP *d2i_ECPKParameters(EC_GROUP **, const unsigned char **in, long len); int i2d_ECPKParameters(const EC_GROUP *, unsigned char **out); # 695 "/glade/apps/opt/usr/include/openssl/ec.h" int ECPKParameters_print(BIO *bp, const EC_GROUP *x, int off); int ECPKParameters_print_fp(FILE *fp, const EC_GROUP *x, int off); typedef struct ec_key_st EC_KEY; EC_KEY *EC_KEY_new(void); int EC_KEY_get_flags(const EC_KEY *key); void EC_KEY_set_flags(EC_KEY *key, int flags); void EC_KEY_clear_flags(EC_KEY *key, int flags); EC_KEY *EC_KEY_new_by_curve_name(int nid); void EC_KEY_free(EC_KEY *key); EC_KEY *EC_KEY_copy(EC_KEY *dst, const EC_KEY *src); EC_KEY *EC_KEY_dup(const EC_KEY *src); int EC_KEY_up_ref(EC_KEY *key); const EC_GROUP *EC_KEY_get0_group(const EC_KEY *key); int EC_KEY_set_group(EC_KEY *key, const EC_GROUP *group); const BIGNUM *EC_KEY_get0_private_key(const EC_KEY *key); int EC_KEY_set_private_key(EC_KEY *key, const BIGNUM *prv); const EC_POINT *EC_KEY_get0_public_key(const EC_KEY *key); int EC_KEY_set_public_key(EC_KEY *key, const EC_POINT *pub); unsigned EC_KEY_get_enc_flags(const EC_KEY *key); void EC_KEY_set_enc_flags(EC_KEY *eckey, unsigned int flags); point_conversion_form_t EC_KEY_get_conv_form(const EC_KEY *key); void EC_KEY_set_conv_form(EC_KEY *eckey, point_conversion_form_t cform); void *EC_KEY_get_key_method_data(EC_KEY *key, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); void *EC_KEY_insert_key_method_data(EC_KEY *key, void *data, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)); void EC_KEY_set_asn1_flag(EC_KEY *eckey, int asn1_flag); int EC_KEY_precompute_mult(EC_KEY *key, BN_CTX *ctx); int EC_KEY_generate_key(EC_KEY *key); int EC_KEY_check_key(const EC_KEY *key); int EC_KEY_set_public_key_affine_coordinates(EC_KEY *key, BIGNUM *x, BIGNUM *y); EC_KEY *d2i_ECPrivateKey(EC_KEY **key, const unsigned char **in, long len); int i2d_ECPrivateKey(EC_KEY *key, unsigned char **out); EC_KEY *d2i_ECParameters(EC_KEY **key, const unsigned char **in, long len); int i2d_ECParameters(EC_KEY *key, unsigned char **out); EC_KEY *o2i_ECPublicKey(EC_KEY **key, const unsigned char **in, long len); int i2o_ECPublicKey(EC_KEY *key, unsigned char **out); int ECParameters_print(BIO *bp, const EC_KEY *key); int EC_KEY_print(BIO *bp, const EC_KEY *key, int off); int ECParameters_print_fp(FILE *fp, const EC_KEY *key); int EC_KEY_print_fp(FILE *fp, const EC_KEY *key, int off); # 961 "/glade/apps/opt/usr/include/openssl/ec.h" void ERR_load_EC_strings(void); # 1114 "/glade/apps/opt/usr/include/openssl/ec.h" # 1163 "/glade/apps/opt/usr/include/openssl/ec.h" } # 84 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/ecdsa.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 63 "/glade/apps/opt/usr/include/openssl/ecdsa.h" 2 extern "C" { typedef struct ECDSA_SIG_st { BIGNUM *r; BIGNUM *s; } ECDSA_SIG; ECDSA_SIG *ECDSA_SIG_new(void); void ECDSA_SIG_free(ECDSA_SIG *sig); int i2d_ECDSA_SIG(const ECDSA_SIG *sig, unsigned char **pp); ECDSA_SIG *d2i_ECDSA_SIG(ECDSA_SIG **sig, const unsigned char **pp, long len); ECDSA_SIG *ECDSA_do_sign(const unsigned char *dgst,int dgst_len,EC_KEY *eckey); ECDSA_SIG *ECDSA_do_sign_ex(const unsigned char *dgst, int dgstlen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); int ECDSA_do_verify(const unsigned char *dgst, int dgst_len, const ECDSA_SIG *sig, EC_KEY* eckey); const ECDSA_METHOD *ECDSA_OpenSSL(void); void ECDSA_set_default_method(const ECDSA_METHOD *meth); const ECDSA_METHOD *ECDSA_get_default_method(void); int ECDSA_set_method(EC_KEY *eckey, const ECDSA_METHOD *meth); int ECDSA_size(const EC_KEY *eckey); int ECDSA_sign_setup(EC_KEY *eckey, BN_CTX *ctx, BIGNUM **kinv, BIGNUM **rp); int ECDSA_sign(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, EC_KEY *eckey); int ECDSA_sign_ex(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey); int ECDSA_verify(int type, const unsigned char *dgst, int dgstlen, const unsigned char *sig, int siglen, EC_KEY *eckey); int ECDSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDSA_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDSA_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDSA_strings(void); # 256 "/glade/apps/opt/usr/include/openssl/ecdsa.h" } # 88 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/ecdh.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 73 "/glade/apps/opt/usr/include/openssl/ecdh.h" 2 extern "C" { const ECDH_METHOD *ECDH_OpenSSL(void); void ECDH_set_default_method(const ECDH_METHOD *); const ECDH_METHOD *ECDH_get_default_method(void); int ECDH_set_method(EC_KEY *, const ECDH_METHOD *); int ECDH_compute_key(void *out, size_t outlen, const EC_POINT *pub_key, EC_KEY *ecdh, void *(*KDF)(const void *in, size_t inlen, void *out, size_t *outlen)); int ECDH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int ECDH_set_ex_data(EC_KEY *d, int idx, void *arg); void *ECDH_get_ex_data(EC_KEY *d, int idx); void ERR_load_ECDH_strings(void); } # 92 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/rsa.h" 1 # 72 "/glade/apps/opt/usr/include/openssl/rsa.h" extern "C" { struct rsa_meth_st { const char *name; int (*rsa_pub_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_pub_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_priv_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int (*rsa_mod_exp)(BIGNUM *r0,const BIGNUM *I,RSA *rsa,BN_CTX *ctx); int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(RSA *rsa); int (*finish)(RSA *rsa); int flags; char *app_data; int (*rsa_sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, const RSA *rsa); int (*rsa_verify)(int dtype, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, const RSA *rsa); int (*rsa_keygen)(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); }; struct rsa_st { int pad; long version; const RSA_METHOD *meth; ENGINE *engine; BIGNUM *n; BIGNUM *e; BIGNUM *d; BIGNUM *p; BIGNUM *q; BIGNUM *dmp1; BIGNUM *dmq1; BIGNUM *iqmp; CRYPTO_EX_DATA ex_data; int references; int flags; BN_MONT_CTX *_method_mod_n; BN_MONT_CTX *_method_mod_p; BN_MONT_CTX *_method_mod_q; char *bignum_data; BN_BLINDING *blinding; BN_BLINDING *mt_blinding; }; # 173 "/glade/apps/opt/usr/include/openssl/rsa.h" # 211 "/glade/apps/opt/usr/include/openssl/rsa.h" RSA * RSA_new(void); RSA * RSA_new_method(ENGINE *engine); int RSA_size(const RSA *rsa); RSA * RSA_generate_key(int bits, unsigned long e,void (*callback)(int,int,void *),void *cb_arg); int RSA_generate_key_ex(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb); int RSA_check_key(const RSA *); int RSA_public_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_public_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); int RSA_private_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding); void RSA_free (RSA *r); int RSA_up_ref(RSA *r); int RSA_flags(const RSA *r); void RSA_set_default_method(const RSA_METHOD *meth); const RSA_METHOD *RSA_get_default_method(void); const RSA_METHOD *RSA_get_method(const RSA *rsa); int RSA_set_method(RSA *rsa, const RSA_METHOD *meth); int RSA_memory_lock(RSA *r); const RSA_METHOD *RSA_PKCS1_SSLeay(void); const RSA_METHOD *RSA_null_method(void); RSA *d2i_RSAPublicKey(RSA * *a, const unsigned char * *in, long len); int i2d_RSAPublicKey(const RSA *a, unsigned char * *out); extern const ASN1_ITEM RSAPublicKey_it; RSA *d2i_RSAPrivateKey(RSA * *a, const unsigned char * *in, long len); int i2d_RSAPrivateKey(const RSA *a, unsigned char * *out); extern const ASN1_ITEM RSAPrivateKey_it; typedef struct rsa_pss_params_st { X509_ALGOR *hashAlgorithm; X509_ALGOR *maskGenAlgorithm; ASN1_INTEGER *saltLength; ASN1_INTEGER *trailerField; } RSA_PSS_PARAMS; RSA_PSS_PARAMS *RSA_PSS_PARAMS_new(void); void RSA_PSS_PARAMS_free(RSA_PSS_PARAMS *a); RSA_PSS_PARAMS *d2i_RSA_PSS_PARAMS(RSA_PSS_PARAMS * *a, const unsigned char * *in, long len); int i2d_RSA_PSS_PARAMS(RSA_PSS_PARAMS *a, unsigned char * *out); extern const ASN1_ITEM RSA_PSS_PARAMS_it; int RSA_print_fp(FILE *fp, const RSA *r,int offset); int RSA_print(BIO *bp, const RSA *r,int offset); int i2d_RSA_NET(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); RSA *d2i_RSA_NET(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey); int i2d_Netscape_RSA(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify)); RSA *d2i_Netscape_RSA(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify)); int RSA_sign(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_sign_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa); int RSA_verify_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa); int RSA_blinding_on(RSA *rsa, BN_CTX *ctx); void RSA_blinding_off(RSA *rsa); BN_BLINDING *RSA_setup_blinding(RSA *rsa, BN_CTX *ctx); int RSA_padding_add_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int PKCS1_MGF1(unsigned char *mask, long len, const unsigned char *seed, long seedlen, const EVP_MD *dgst); int RSA_padding_add_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl, const unsigned char *p,int pl); int RSA_padding_check_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len, const unsigned char *p,int pl); int RSA_padding_add_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_none(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_none(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_padding_add_X931(unsigned char *to,int tlen, const unsigned char *f,int fl); int RSA_padding_check_X931(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len); int RSA_X931_hash_id(int nid); int RSA_verify_PKCS1_PSS(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, int sLen); int RSA_verify_PKCS1_PSS_mgf1(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, const unsigned char *EM, int sLen); int RSA_padding_add_PKCS1_PSS_mgf1(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, const EVP_MD *mgf1Hash, int sLen); int RSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int RSA_set_ex_data(RSA *r,int idx,void *arg); void *RSA_get_ex_data(const RSA *r, int idx); RSA *RSAPublicKey_dup(RSA *rsa); RSA *RSAPrivateKey_dup(RSA *rsa); void ERR_load_RSA_strings(void); # 517 "/glade/apps/opt/usr/include/openssl/rsa.h" # 578 "/glade/apps/opt/usr/include/openssl/rsa.h" } # 97 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/dsa.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 69 "/glade/apps/opt/usr/include/openssl/dsa.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/dh.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 63 "/glade/apps/opt/usr/include/openssl/dh.h" 2 # 75 "/glade/apps/opt/usr/include/openssl/dh.h" # 88 "/glade/apps/opt/usr/include/openssl/dh.h" extern "C" { struct dh_method { const char *name; int (*generate_key)(DH *dh); int (*compute_key)(unsigned char *key,const BIGNUM *pub_key,DH *dh); int (*bn_mod_exp)(const DH *dh, BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DH *dh); int (*finish)(DH *dh); int flags; char *app_data; int (*generate_params)(DH *dh, int prime_len, int generator, BN_GENCB *cb); }; struct dh_st { int pad; int version; BIGNUM *p; BIGNUM *g; long length; BIGNUM *pub_key; BIGNUM *priv_key; int flags; BN_MONT_CTX *method_mont_p; BIGNUM *q; BIGNUM *j; unsigned char *seed; int seedlen; BIGNUM *counter; int references; CRYPTO_EX_DATA ex_data; const DH_METHOD *meth; ENGINE *engine; }; # 181 "/glade/apps/opt/usr/include/openssl/dh.h" DH *DHparams_dup(DH *); const DH_METHOD *DH_OpenSSL(void); void DH_set_default_method(const DH_METHOD *meth); const DH_METHOD *DH_get_default_method(void); int DH_set_method(DH *dh, const DH_METHOD *meth); DH *DH_new_method(ENGINE *engine); DH * DH_new(void); void DH_free(DH *dh); int DH_up_ref(DH *dh); int DH_size(const DH *dh); int DH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DH_set_ex_data(DH *d, int idx, void *arg); void *DH_get_ex_data(DH *d, int idx); DH * DH_generate_parameters(int prime_len,int generator, void (*callback)(int,int,void *),void *cb_arg); int DH_generate_parameters_ex(DH *dh, int prime_len,int generator, BN_GENCB *cb); int DH_check(const DH *dh,int *codes); int DH_check_pub_key(const DH *dh,const BIGNUM *pub_key, int *codes); int DH_generate_key(DH *dh); int DH_compute_key(unsigned char *key,const BIGNUM *pub_key,DH *dh); DH * d2i_DHparams(DH **a,const unsigned char **pp, long length); int i2d_DHparams(const DH *a,unsigned char **pp); int DHparams_print_fp(FILE *fp, const DH *x); int DHparams_print(BIO *bp, const DH *x); void ERR_load_DH_strings(void); # 262 "/glade/apps/opt/usr/include/openssl/dh.h" # 276 "/glade/apps/opt/usr/include/openssl/dh.h" } # 84 "/glade/apps/opt/usr/include/openssl/dsa.h" 2 # 99 "/glade/apps/opt/usr/include/openssl/dsa.h" extern "C" { typedef struct DSA_SIG_st { BIGNUM *r; BIGNUM *s; } DSA_SIG; struct dsa_method { const char *name; DSA_SIG * (*dsa_do_sign)(const unsigned char *dgst, int dlen, DSA *dsa); int (*dsa_sign_setup)(DSA *dsa, BN_CTX *ctx_in, BIGNUM **kinvp, BIGNUM **rp); int (*dsa_do_verify)(const unsigned char *dgst, int dgst_len, DSA_SIG *sig, DSA *dsa); int (*dsa_mod_exp)(DSA *dsa, BIGNUM *rr, BIGNUM *a1, BIGNUM *p1, BIGNUM *a2, BIGNUM *p2, BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont); int (*bn_mod_exp)(DSA *dsa, BIGNUM *r, BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx); int (*init)(DSA *dsa); int (*finish)(DSA *dsa); int flags; char *app_data; int (*dsa_paramgen)(DSA *dsa, int bits, const unsigned char *seed, int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int (*dsa_keygen)(DSA *dsa); }; struct dsa_st { int pad; long version; int write_params; BIGNUM *p; BIGNUM *q; BIGNUM *g; BIGNUM *pub_key; BIGNUM *priv_key; BIGNUM *kinv; BIGNUM *r; int flags; BN_MONT_CTX *method_mont_p; int references; CRYPTO_EX_DATA ex_data; const DSA_METHOD *meth; ENGINE *engine; }; # 189 "/glade/apps/opt/usr/include/openssl/dsa.h" DSA *DSAparams_dup(DSA *x); DSA_SIG * DSA_SIG_new(void); void DSA_SIG_free(DSA_SIG *a); int i2d_DSA_SIG(const DSA_SIG *a, unsigned char **pp); DSA_SIG * d2i_DSA_SIG(DSA_SIG **v, const unsigned char **pp, long length); DSA_SIG * DSA_do_sign(const unsigned char *dgst,int dlen,DSA *dsa); int DSA_do_verify(const unsigned char *dgst,int dgst_len, DSA_SIG *sig,DSA *dsa); const DSA_METHOD *DSA_OpenSSL(void); void DSA_set_default_method(const DSA_METHOD *); const DSA_METHOD *DSA_get_default_method(void); int DSA_set_method(DSA *dsa, const DSA_METHOD *); DSA * DSA_new(void); DSA * DSA_new_method(ENGINE *engine); void DSA_free (DSA *r); int DSA_up_ref(DSA *r); int DSA_size(const DSA *); int DSA_sign_setup( DSA *dsa,BN_CTX *ctx_in,BIGNUM **kinvp,BIGNUM **rp); int DSA_sign(int type,const unsigned char *dgst,int dlen, unsigned char *sig, unsigned int *siglen, DSA *dsa); int DSA_verify(int type,const unsigned char *dgst,int dgst_len, const unsigned char *sigbuf, int siglen, DSA *dsa); int DSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int DSA_set_ex_data(DSA *d, int idx, void *arg); void *DSA_get_ex_data(DSA *d, int idx); DSA * d2i_DSAPublicKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAPrivateKey(DSA **a, const unsigned char **pp, long length); DSA * d2i_DSAparams(DSA **a, const unsigned char **pp, long length); DSA * DSA_generate_parameters(int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret,void (*callback)(int, int, void *),void *cb_arg); int DSA_generate_parameters_ex(DSA *dsa, int bits, const unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb); int DSA_generate_key(DSA *a); int i2d_DSAPublicKey(const DSA *a, unsigned char **pp); int i2d_DSAPrivateKey(const DSA *a, unsigned char **pp); int i2d_DSAparams(const DSA *a,unsigned char **pp); int DSAparams_print(BIO *bp, const DSA *x); int DSA_print(BIO *bp, const DSA *x, int off); int DSAparams_print_fp(FILE *fp, const DSA *x); int DSA_print_fp(FILE *bp, const DSA *x, int off); DH *DSA_dup_DH(const DSA *r); void ERR_load_DSA_strings(void); # 309 "/glade/apps/opt/usr/include/openssl/dsa.h" # 323 "/glade/apps/opt/usr/include/openssl/dsa.h" } # 100 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/sha.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 63 "/glade/apps/opt/usr/include/openssl/sha.h" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 64 "/glade/apps/opt/usr/include/openssl/sha.h" 2 extern "C" { # 92 "/glade/apps/opt/usr/include/openssl/sha.h" # 99 "/glade/apps/opt/usr/include/openssl/sha.h" typedef struct SHAstate_st { unsigned int h0,h1,h2,h3,h4; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num; } SHA_CTX; int SHA_Init(SHA_CTX *c); int SHA_Update(SHA_CTX *c, const void *data, size_t len); int SHA_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA(const unsigned char *d, size_t n, unsigned char *md); void SHA_Transform(SHA_CTX *c, const unsigned char *data); int SHA1_Init(SHA_CTX *c); int SHA1_Update(SHA_CTX *c, const void *data, size_t len); int SHA1_Final(unsigned char *md, SHA_CTX *c); unsigned char *SHA1(const unsigned char *d, size_t n, unsigned char *md); void SHA1_Transform(SHA_CTX *c, const unsigned char *data); typedef struct SHA256state_st { unsigned int h[8]; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num,md_len; } SHA256_CTX; int SHA224_Init(SHA256_CTX *c); int SHA224_Update(SHA256_CTX *c, const void *data, size_t len); int SHA224_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA224(const unsigned char *d, size_t n,unsigned char *md); int SHA256_Init(SHA256_CTX *c); int SHA256_Update(SHA256_CTX *c, const void *data, size_t len); int SHA256_Final(unsigned char *md, SHA256_CTX *c); unsigned char *SHA256(const unsigned char *d, size_t n,unsigned char *md); void SHA256_Transform(SHA256_CTX *c, const unsigned char *data); # 181 "/glade/apps/opt/usr/include/openssl/sha.h" typedef struct SHA512state_st { unsigned long long h[8]; unsigned long long Nl,Nh; union { unsigned long long d[16]; unsigned char p[(16*8)]; } u; unsigned int num,md_len; } SHA512_CTX; int SHA384_Init(SHA512_CTX *c); int SHA384_Update(SHA512_CTX *c, const void *data, size_t len); int SHA384_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA384(const unsigned char *d, size_t n,unsigned char *md); int SHA512_Init(SHA512_CTX *c); int SHA512_Update(SHA512_CTX *c, const void *data, size_t len); int SHA512_Final(unsigned char *md, SHA512_CTX *c); unsigned char *SHA512(const unsigned char *d, size_t n,unsigned char *md); void SHA512_Transform(SHA512_CTX *c, const unsigned char *data); } # 108 "/glade/apps/opt/usr/include/openssl/x509.h" 2 extern "C" { # 121 "/glade/apps/opt/usr/include/openssl/x509.h" # 136 "/glade/apps/opt/usr/include/openssl/x509.h" typedef struct X509_objects_st { int nid; int (*a2i)(void); int (*i2a)(void); } X509_OBJECTS; struct X509_algor_st { ASN1_OBJECT *algorithm; ASN1_TYPE *parameter; } ; typedef struct stack_st_X509_ALGOR X509_ALGORS; typedef struct X509_val_st { ASN1_TIME *notBefore; ASN1_TIME *notAfter; } X509_VAL; struct X509_pubkey_st { X509_ALGOR *algor; ASN1_BIT_STRING *public_key; EVP_PKEY *pkey; }; typedef struct X509_sig_st { X509_ALGOR *algor; ASN1_OCTET_STRING *digest; } X509_SIG; typedef struct X509_name_entry_st { ASN1_OBJECT *object; ASN1_STRING *value; int set; int size; } X509_NAME_ENTRY; struct stack_st_X509_NAME_ENTRY { _STACK stack; }; struct X509_name_st { struct stack_st_X509_NAME_ENTRY *entries; int modified; BUF_MEM *bytes; unsigned char *canon_enc; int canon_enclen; } ; struct stack_st_X509_NAME { _STACK stack; }; typedef struct X509_extension_st { ASN1_OBJECT *object; ASN1_BOOLEAN critical; ASN1_OCTET_STRING *value; } X509_EXTENSION; typedef struct stack_st_X509_EXTENSION X509_EXTENSIONS; struct stack_st_X509_EXTENSION { _STACK stack; }; typedef struct x509_attributes_st { ASN1_OBJECT *object; int single; union { char *ptr; struct stack_st_ASN1_TYPE *set; ASN1_TYPE *single; } value; } X509_ATTRIBUTE; struct stack_st_X509_ATTRIBUTE { _STACK stack; }; typedef struct X509_req_info_st { ASN1_ENCODING enc; ASN1_INTEGER *version; X509_NAME *subject; X509_PUBKEY *pubkey; struct stack_st_X509_ATTRIBUTE *attributes; } X509_REQ_INFO; typedef struct X509_req_st { X509_REQ_INFO *req_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } X509_REQ; typedef struct x509_cinf_st { ASN1_INTEGER *version; ASN1_INTEGER *serialNumber; X509_ALGOR *signature; X509_NAME *issuer; X509_VAL *validity; X509_NAME *subject; X509_PUBKEY *key; ASN1_BIT_STRING *issuerUID; ASN1_BIT_STRING *subjectUID; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CINF; typedef struct x509_cert_aux_st { struct stack_st_ASN1_OBJECT *trust; struct stack_st_ASN1_OBJECT *reject; ASN1_UTF8STRING *alias; ASN1_OCTET_STRING *keyid; struct stack_st_X509_ALGOR *other; } X509_CERT_AUX; struct x509_st { X509_CINF *cert_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int valid; int references; char *name; CRYPTO_EX_DATA ex_data; long ex_pathlen; long ex_pcpathlen; unsigned long ex_flags; unsigned long ex_kusage; unsigned long ex_xkusage; unsigned long ex_nscert; ASN1_OCTET_STRING *skid; AUTHORITY_KEYID *akid; X509_POLICY_CACHE *policy_cache; struct stack_st_DIST_POINT *crldp; struct stack_st_GENERAL_NAME *altname; NAME_CONSTRAINTS *nc; unsigned char sha1_hash[20]; X509_CERT_AUX *aux; } ; struct stack_st_X509 { _STACK stack; }; typedef struct x509_trust_st { int trust; int flags; int (*check_trust)(struct x509_trust_st *, X509 *, int); char *name; int arg1; void *arg2; } X509_TRUST; struct stack_st_X509_TRUST { _STACK stack; }; typedef struct x509_cert_pair_st { X509 *forward; X509 *reverse; } X509_CERT_PAIR; # 344 "/glade/apps/opt/usr/include/openssl/x509.h" # 375 "/glade/apps/opt/usr/include/openssl/x509.h" # 433 "/glade/apps/opt/usr/include/openssl/x509.h" struct x509_revoked_st { ASN1_INTEGER *serialNumber; ASN1_TIME *revocationDate; struct stack_st_X509_EXTENSION *extensions; struct stack_st_GENERAL_NAME *issuer; int reason; int sequence; }; struct stack_st_X509_REVOKED { _STACK stack; }; typedef struct X509_crl_info_st { ASN1_INTEGER *version; X509_ALGOR *sig_alg; X509_NAME *issuer; ASN1_TIME *lastUpdate; ASN1_TIME *nextUpdate; struct stack_st_X509_REVOKED *revoked; struct stack_st_X509_EXTENSION *extensions; ASN1_ENCODING enc; } X509_CRL_INFO; struct X509_crl_st { X509_CRL_INFO *crl; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; int flags; AUTHORITY_KEYID *akid; ISSUING_DIST_POINT *idp; int idp_flags; int idp_reasons; ASN1_INTEGER *crl_number; ASN1_INTEGER *base_crl_number; unsigned char sha1_hash[20]; struct stack_st_GENERAL_NAMES *issuers; const X509_CRL_METHOD *meth; void *meth_data; } ; struct stack_st_X509_CRL { _STACK stack; }; typedef struct private_key_st { int version; X509_ALGOR *enc_algor; ASN1_OCTET_STRING *enc_pkey; EVP_PKEY *dec_pkey; int key_length; char *key_data; int key_free; EVP_CIPHER_INFO cipher; int references; } X509_PKEY; typedef struct X509_info_st { X509 *x509; X509_CRL *crl; X509_PKEY *x_pkey; EVP_CIPHER_INFO enc_cipher; int enc_len; char *enc_data; int references; } X509_INFO; struct stack_st_X509_INFO { _STACK stack; }; typedef struct Netscape_spkac_st { X509_PUBKEY *pubkey; ASN1_IA5STRING *challenge; } NETSCAPE_SPKAC; typedef struct Netscape_spki_st { NETSCAPE_SPKAC *spkac; X509_ALGOR *sig_algor; ASN1_BIT_STRING *signature; } NETSCAPE_SPKI; typedef struct Netscape_certificate_sequence { ASN1_OBJECT *type; struct stack_st_X509 *certs; } NETSCAPE_CERT_SEQUENCE; typedef struct PBEPARAM_st { ASN1_OCTET_STRING *salt; ASN1_INTEGER *iter; } PBEPARAM; typedef struct PBE2PARAM_st { X509_ALGOR *keyfunc; X509_ALGOR *encryption; } PBE2PARAM; typedef struct PBKDF2PARAM_st { ASN1_TYPE *salt; ASN1_INTEGER *iter; ASN1_INTEGER *keylength; X509_ALGOR *prf; } PBKDF2PARAM; struct pkcs8_priv_key_info_st { int broken; ASN1_INTEGER *version; X509_ALGOR *pkeyalg; ASN1_TYPE *pkey; struct stack_st_X509_ATTRIBUTE *attributes; }; } # 1 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 69 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/lhash.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 67 "/glade/apps/opt/usr/include/openssl/lhash.h" 2 extern "C" { typedef struct lhash_node_st { void *data; struct lhash_node_st *next; unsigned long hash; } LHASH_NODE; typedef int (*LHASH_COMP_FN_TYPE)(const void *, const void *); typedef unsigned long (*LHASH_HASH_FN_TYPE)(const void *); typedef void (*LHASH_DOALL_FN_TYPE)(void *); typedef void (*LHASH_DOALL_ARG_FN_TYPE)(void *, void *); # 108 "/glade/apps/opt/usr/include/openssl/lhash.h" # 118 "/glade/apps/opt/usr/include/openssl/lhash.h" # 127 "/glade/apps/opt/usr/include/openssl/lhash.h" # 137 "/glade/apps/opt/usr/include/openssl/lhash.h" typedef struct lhash_st { LHASH_NODE **b; LHASH_COMP_FN_TYPE comp; LHASH_HASH_FN_TYPE hash; unsigned int num_nodes; unsigned int num_alloc_nodes; unsigned int p; unsigned int pmax; unsigned long up_load; unsigned long down_load; unsigned long num_items; unsigned long num_expands; unsigned long num_expand_reallocs; unsigned long num_contracts; unsigned long num_contract_reallocs; unsigned long num_hash_calls; unsigned long num_comp_calls; unsigned long num_insert; unsigned long num_replace; unsigned long num_delete; unsigned long num_no_delete; unsigned long num_retrieve; unsigned long num_retrieve_miss; unsigned long num_hash_comps; int error; } _LHASH; _LHASH *lh_new(LHASH_HASH_FN_TYPE h, LHASH_COMP_FN_TYPE c); void lh_free(_LHASH *lh); void *lh_insert(_LHASH *lh, void *data); void *lh_delete(_LHASH *lh, const void *data); void *lh_retrieve(_LHASH *lh, const void *data); void lh_doall(_LHASH *lh, LHASH_DOALL_FN_TYPE func); void lh_doall_arg(_LHASH *lh, LHASH_DOALL_ARG_FN_TYPE func, void *arg); unsigned long lh_strhash(const char *c); unsigned long lh_num_items(const _LHASH *lh); void lh_stats(const _LHASH *lh, FILE *out); void lh_node_stats(const _LHASH *lh, FILE *out); void lh_node_usage_stats(const _LHASH *lh, FILE *out); void lh_stats_bio(const _LHASH *lh, BIO *out); void lh_node_stats_bio(const _LHASH *lh, BIO *out); void lh_node_usage_stats_bio(const _LHASH *lh, BIO *out); # 232 "/glade/apps/opt/usr/include/openssl/lhash.h" struct lhash_st_OPENSSL_STRING { int dummy; }; struct lhash_st_OPENSSL_CSTRING { int dummy; }; } # 71 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" 2 extern "C" { # 90 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" typedef struct x509_file_st { int num_paths; int num_alloced; char **paths; int *path_type; } X509_CERT_FILE_CTX; typedef struct x509_object_st { int type; union { char *ptr; X509 *x509; X509_CRL *crl; EVP_PKEY *pkey; } data; } X509_OBJECT; typedef struct x509_lookup_st X509_LOOKUP; struct stack_st_X509_LOOKUP { _STACK stack; }; struct stack_st_X509_OBJECT { _STACK stack; }; typedef struct x509_lookup_method_st { const char *name; int (*new_item)(X509_LOOKUP *ctx); void (*free)(X509_LOOKUP *ctx); int (*init)(X509_LOOKUP *ctx); int (*shutdown)(X509_LOOKUP *ctx); int (*ctrl)(X509_LOOKUP *ctx,int cmd,const char *argc,long argl, char **ret); int (*get_by_subject)(X509_LOOKUP *ctx,int type,X509_NAME *name, X509_OBJECT *ret); int (*get_by_issuer_serial)(X509_LOOKUP *ctx,int type,X509_NAME *name, ASN1_INTEGER *serial,X509_OBJECT *ret); int (*get_by_fingerprint)(X509_LOOKUP *ctx,int type, unsigned char *bytes,int len, X509_OBJECT *ret); int (*get_by_alias)(X509_LOOKUP *ctx,int type,char *str,int len, X509_OBJECT *ret); } X509_LOOKUP_METHOD; typedef struct X509_VERIFY_PARAM_st { char *name; time_t check_time; unsigned long inh_flags; unsigned long flags; int purpose; int trust; int depth; struct stack_st_ASN1_OBJECT *policies; } X509_VERIFY_PARAM; struct stack_st_X509_VERIFY_PARAM { _STACK stack; }; struct x509_store_st { int cache; struct stack_st_X509_OBJECT *objs; struct stack_st_X509_LOOKUP *get_cert_methods; X509_VERIFY_PARAM *param; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); CRYPTO_EX_DATA ex_data; int references; } ; int X509_STORE_set_depth(X509_STORE *store, int depth); struct x509_lookup_st { int init; int skip; X509_LOOKUP_METHOD *method; char *method_data; X509_STORE *store_ctx; } ; struct x509_store_ctx_st { X509_STORE *ctx; int current_method; X509 *cert; struct stack_st_X509 *untrusted; struct stack_st_X509_CRL *crls; X509_VERIFY_PARAM *param; void *other_ctx; int (*verify)(X509_STORE_CTX *ctx); int (*verify_cb)(int ok,X509_STORE_CTX *ctx); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer); int (*check_revocation)(X509_STORE_CTX *ctx); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x); int (*check_policy)(X509_STORE_CTX *ctx); struct stack_st_X509 * (*lookup_certs)(X509_STORE_CTX *ctx, X509_NAME *nm); struct stack_st_X509_CRL * (*lookup_crls)(X509_STORE_CTX *ctx, X509_NAME *nm); int (*cleanup)(X509_STORE_CTX *ctx); int valid; int last_untrusted; struct stack_st_X509 *chain; X509_POLICY_TREE *tree; int explicit_policy; int error_depth; int error; X509 *current_cert; X509 *current_issuer; X509_CRL *current_crl; int current_crl_score; unsigned int current_reasons; X509_STORE_CTX *parent; CRYPTO_EX_DATA ex_data; } ; void X509_STORE_CTX_set_depth(X509_STORE_CTX *ctx, int depth); # 326 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" # 340 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" # 356 "/glade/apps/opt/usr/include/openssl/x509_vfy.h" int X509_OBJECT_idx_by_subject(struct stack_st_X509_OBJECT *h, int type, X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_by_subject(struct stack_st_X509_OBJECT *h,int type,X509_NAME *name); X509_OBJECT *X509_OBJECT_retrieve_match(struct stack_st_X509_OBJECT *h, X509_OBJECT *x); void X509_OBJECT_up_ref_count(X509_OBJECT *a); void X509_OBJECT_free_contents(X509_OBJECT *a); X509_STORE *X509_STORE_new(void ); void X509_STORE_free(X509_STORE *v); struct stack_st_X509* X509_STORE_get1_certs(X509_STORE_CTX *st, X509_NAME *nm); struct stack_st_X509_CRL* X509_STORE_get1_crls(X509_STORE_CTX *st, X509_NAME *nm); int X509_STORE_set_flags(X509_STORE *ctx, unsigned long flags); int X509_STORE_set_purpose(X509_STORE *ctx, int purpose); int X509_STORE_set_trust(X509_STORE *ctx, int trust); int X509_STORE_set1_param(X509_STORE *ctx, X509_VERIFY_PARAM *pm); void X509_STORE_set_verify_cb(X509_STORE *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_STORE_CTX *X509_STORE_CTX_new(void); int X509_STORE_CTX_get1_issuer(X509 **issuer, X509_STORE_CTX *ctx, X509 *x); void X509_STORE_CTX_free(X509_STORE_CTX *ctx); int X509_STORE_CTX_init(X509_STORE_CTX *ctx, X509_STORE *store, X509 *x509, struct stack_st_X509 *chain); void X509_STORE_CTX_trusted_stack(X509_STORE_CTX *ctx, struct stack_st_X509 *sk); void X509_STORE_CTX_cleanup(X509_STORE_CTX *ctx); X509_LOOKUP *X509_STORE_add_lookup(X509_STORE *v, X509_LOOKUP_METHOD *m); X509_LOOKUP_METHOD *X509_LOOKUP_hash_dir(void); X509_LOOKUP_METHOD *X509_LOOKUP_file(void); int X509_STORE_add_cert(X509_STORE *ctx, X509 *x); int X509_STORE_add_crl(X509_STORE *ctx, X509_CRL *x); int X509_STORE_get_by_subject(X509_STORE_CTX *vs,int type,X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_ctrl(X509_LOOKUP *ctx, int cmd, const char *argc, long argl, char **ret); int X509_load_cert_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_crl_file(X509_LOOKUP *ctx, const char *file, int type); int X509_load_cert_crl_file(X509_LOOKUP *ctx, const char *file, int type); X509_LOOKUP *X509_LOOKUP_new(X509_LOOKUP_METHOD *method); void X509_LOOKUP_free(X509_LOOKUP *ctx); int X509_LOOKUP_init(X509_LOOKUP *ctx); int X509_LOOKUP_by_subject(X509_LOOKUP *ctx, int type, X509_NAME *name, X509_OBJECT *ret); int X509_LOOKUP_by_issuer_serial(X509_LOOKUP *ctx, int type, X509_NAME *name, ASN1_INTEGER *serial, X509_OBJECT *ret); int X509_LOOKUP_by_fingerprint(X509_LOOKUP *ctx, int type, unsigned char *bytes, int len, X509_OBJECT *ret); int X509_LOOKUP_by_alias(X509_LOOKUP *ctx, int type, char *str, int len, X509_OBJECT *ret); int X509_LOOKUP_shutdown(X509_LOOKUP *ctx); int X509_STORE_load_locations (X509_STORE *ctx, const char *file, const char *dir); int X509_STORE_set_default_paths(X509_STORE *ctx); int X509_STORE_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_STORE_CTX_set_ex_data(X509_STORE_CTX *ctx,int idx,void *data); void * X509_STORE_CTX_get_ex_data(X509_STORE_CTX *ctx,int idx); int X509_STORE_CTX_get_error(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_error(X509_STORE_CTX *ctx,int s); int X509_STORE_CTX_get_error_depth(X509_STORE_CTX *ctx); X509 * X509_STORE_CTX_get_current_cert(X509_STORE_CTX *ctx); X509 *X509_STORE_CTX_get0_current_issuer(X509_STORE_CTX *ctx); X509_CRL *X509_STORE_CTX_get0_current_crl(X509_STORE_CTX *ctx); X509_STORE_CTX *X509_STORE_CTX_get0_parent_ctx(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get_chain(X509_STORE_CTX *ctx); struct stack_st_X509 *X509_STORE_CTX_get1_chain(X509_STORE_CTX *ctx); void X509_STORE_CTX_set_cert(X509_STORE_CTX *c,X509 *x); void X509_STORE_CTX_set_chain(X509_STORE_CTX *c,struct stack_st_X509 *sk); void X509_STORE_CTX_set0_crls(X509_STORE_CTX *c,struct stack_st_X509_CRL *sk); int X509_STORE_CTX_set_purpose(X509_STORE_CTX *ctx, int purpose); int X509_STORE_CTX_set_trust(X509_STORE_CTX *ctx, int trust); int X509_STORE_CTX_purpose_inherit(X509_STORE_CTX *ctx, int def_purpose, int purpose, int trust); void X509_STORE_CTX_set_flags(X509_STORE_CTX *ctx, unsigned long flags); void X509_STORE_CTX_set_time(X509_STORE_CTX *ctx, unsigned long flags, time_t t); void X509_STORE_CTX_set_verify_cb(X509_STORE_CTX *ctx, int (*verify_cb)(int, X509_STORE_CTX *)); X509_POLICY_TREE *X509_STORE_CTX_get0_policy_tree(X509_STORE_CTX *ctx); int X509_STORE_CTX_get_explicit_policy(X509_STORE_CTX *ctx); X509_VERIFY_PARAM *X509_STORE_CTX_get0_param(X509_STORE_CTX *ctx); void X509_STORE_CTX_set0_param(X509_STORE_CTX *ctx, X509_VERIFY_PARAM *param); int X509_STORE_CTX_set_default(X509_STORE_CTX *ctx, const char *name); X509_VERIFY_PARAM *X509_VERIFY_PARAM_new(void); void X509_VERIFY_PARAM_free(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_inherit(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from); int X509_VERIFY_PARAM_set1_name(X509_VERIFY_PARAM *param, const char *name); int X509_VERIFY_PARAM_set_flags(X509_VERIFY_PARAM *param, unsigned long flags); int X509_VERIFY_PARAM_clear_flags(X509_VERIFY_PARAM *param, unsigned long flags); unsigned long X509_VERIFY_PARAM_get_flags(X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_set_purpose(X509_VERIFY_PARAM *param, int purpose); int X509_VERIFY_PARAM_set_trust(X509_VERIFY_PARAM *param, int trust); void X509_VERIFY_PARAM_set_depth(X509_VERIFY_PARAM *param, int depth); void X509_VERIFY_PARAM_set_time(X509_VERIFY_PARAM *param, time_t t); int X509_VERIFY_PARAM_add0_policy(X509_VERIFY_PARAM *param, ASN1_OBJECT *policy); int X509_VERIFY_PARAM_set1_policies(X509_VERIFY_PARAM *param, struct stack_st_ASN1_OBJECT *policies); int X509_VERIFY_PARAM_get_depth(const X509_VERIFY_PARAM *param); int X509_VERIFY_PARAM_add0_table(X509_VERIFY_PARAM *param); const X509_VERIFY_PARAM *X509_VERIFY_PARAM_lookup(const char *name); void X509_VERIFY_PARAM_table_cleanup(void); int X509_policy_check(X509_POLICY_TREE **ptree, int *pexplicit_policy, struct stack_st_X509 *certs, struct stack_st_ASN1_OBJECT *policy_oids, unsigned int flags); void X509_policy_tree_free(X509_POLICY_TREE *tree); int X509_policy_tree_level_count(const X509_POLICY_TREE *tree); X509_POLICY_LEVEL * X509_policy_tree_get0_level(const X509_POLICY_TREE *tree, int i); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_policies(const X509_POLICY_TREE *tree); struct stack_st_X509_POLICY_NODE * X509_policy_tree_get0_user_policies(const X509_POLICY_TREE *tree); int X509_policy_level_node_count(X509_POLICY_LEVEL *level); X509_POLICY_NODE *X509_policy_level_get0_node(X509_POLICY_LEVEL *level, int i); const ASN1_OBJECT *X509_policy_node_get0_policy(const X509_POLICY_NODE *node); struct stack_st_POLICYQUALINFO * X509_policy_node_get0_qualifiers(const X509_POLICY_NODE *node); const X509_POLICY_NODE * X509_policy_node_get0_parent(const X509_POLICY_NODE *node); } # 601 "/glade/apps/opt/usr/include/openssl/x509.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/pkcs7.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 65 "/glade/apps/opt/usr/include/openssl/pkcs7.h" 2 extern "C" { typedef struct pkcs7_issuer_and_serial_st { X509_NAME *issuer; ASN1_INTEGER *serial; } PKCS7_ISSUER_AND_SERIAL; typedef struct pkcs7_signer_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *digest_alg; struct stack_st_X509_ATTRIBUTE *auth_attr; X509_ALGOR *digest_enc_alg; ASN1_OCTET_STRING *enc_digest; struct stack_st_X509_ATTRIBUTE *unauth_attr; EVP_PKEY *pkey; } PKCS7_SIGNER_INFO; struct stack_st_PKCS7_SIGNER_INFO { _STACK stack; }; typedef struct pkcs7_recip_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *key_enc_algor; ASN1_OCTET_STRING *enc_key; X509 *cert; } PKCS7_RECIP_INFO; struct stack_st_PKCS7_RECIP_INFO { _STACK stack; }; typedef struct pkcs7_signed_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; struct pkcs7_st *contents; } PKCS7_SIGNED; typedef struct pkcs7_enc_content_st { ASN1_OBJECT *content_type; X509_ALGOR *algorithm; ASN1_OCTET_STRING *enc_data; const EVP_CIPHER *cipher; } PKCS7_ENC_CONTENT; typedef struct pkcs7_enveloped_st { ASN1_INTEGER *version; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENVELOPE; typedef struct pkcs7_signedandenveloped_st { ASN1_INTEGER *version; struct stack_st_X509_ALGOR *md_algs; struct stack_st_X509 *cert; struct stack_st_X509_CRL *crl; struct stack_st_PKCS7_SIGNER_INFO *signer_info; PKCS7_ENC_CONTENT *enc_data; struct stack_st_PKCS7_RECIP_INFO *recipientinfo; } PKCS7_SIGN_ENVELOPE; typedef struct pkcs7_digest_st { ASN1_INTEGER *version; X509_ALGOR *md; struct pkcs7_st *contents; ASN1_OCTET_STRING *digest; } PKCS7_DIGEST; typedef struct pkcs7_encrypted_st { ASN1_INTEGER *version; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENCRYPT; typedef struct pkcs7_st { unsigned char *asn1; long length; int state; int detached; ASN1_OBJECT *type; union { char *ptr; ASN1_OCTET_STRING *data; PKCS7_SIGNED *sign; PKCS7_ENVELOPE *enveloped; PKCS7_SIGN_ENVELOPE *signed_and_enveloped; PKCS7_DIGEST *digest; PKCS7_ENCRYPT *encrypted; ASN1_TYPE *other; } d; } PKCS7; struct stack_st_PKCS7 { _STACK stack; }; # 238 "/glade/apps/opt/usr/include/openssl/pkcs7.h" # 266 "/glade/apps/opt/usr/include/openssl/pkcs7.h" # 278 "/glade/apps/opt/usr/include/openssl/pkcs7.h" PKCS7_ISSUER_AND_SERIAL *PKCS7_ISSUER_AND_SERIAL_new(void); void PKCS7_ISSUER_AND_SERIAL_free(PKCS7_ISSUER_AND_SERIAL *a); PKCS7_ISSUER_AND_SERIAL *d2i_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL * *a, const unsigned char * *in, long len); int i2d_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_ISSUER_AND_SERIAL_it; int PKCS7_ISSUER_AND_SERIAL_digest(PKCS7_ISSUER_AND_SERIAL *data,const EVP_MD *type, unsigned char *md,unsigned int *len); PKCS7 *d2i_PKCS7_fp(FILE *fp,PKCS7 **p7); int i2d_PKCS7_fp(FILE *fp,PKCS7 *p7); PKCS7 *PKCS7_dup(PKCS7 *p7); PKCS7 *d2i_PKCS7_bio(BIO *bp,PKCS7 **p7); int i2d_PKCS7_bio(BIO *bp,PKCS7 *p7); int i2d_PKCS7_bio_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); int PEM_write_bio_PKCS7_stream(BIO *out, PKCS7 *p7, BIO *in, int flags); PKCS7_SIGNER_INFO *PKCS7_SIGNER_INFO_new(void); void PKCS7_SIGNER_INFO_free(PKCS7_SIGNER_INFO *a); PKCS7_SIGNER_INFO *d2i_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO * *a, const unsigned char * *in, long len); int i2d_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_SIGNER_INFO_it; PKCS7_RECIP_INFO *PKCS7_RECIP_INFO_new(void); void PKCS7_RECIP_INFO_free(PKCS7_RECIP_INFO *a); PKCS7_RECIP_INFO *d2i_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO * *a, const unsigned char * *in, long len); int i2d_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_RECIP_INFO_it; PKCS7_SIGNED *PKCS7_SIGNED_new(void); void PKCS7_SIGNED_free(PKCS7_SIGNED *a); PKCS7_SIGNED *d2i_PKCS7_SIGNED(PKCS7_SIGNED * *a, const unsigned char * *in, long len); int i2d_PKCS7_SIGNED(PKCS7_SIGNED *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_SIGNED_it; PKCS7_ENC_CONTENT *PKCS7_ENC_CONTENT_new(void); void PKCS7_ENC_CONTENT_free(PKCS7_ENC_CONTENT *a); PKCS7_ENC_CONTENT *d2i_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT * *a, const unsigned char * *in, long len); int i2d_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_ENC_CONTENT_it; PKCS7_ENVELOPE *PKCS7_ENVELOPE_new(void); void PKCS7_ENVELOPE_free(PKCS7_ENVELOPE *a); PKCS7_ENVELOPE *d2i_PKCS7_ENVELOPE(PKCS7_ENVELOPE * *a, const unsigned char * *in, long len); int i2d_PKCS7_ENVELOPE(PKCS7_ENVELOPE *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_ENVELOPE_it; PKCS7_SIGN_ENVELOPE *PKCS7_SIGN_ENVELOPE_new(void); void PKCS7_SIGN_ENVELOPE_free(PKCS7_SIGN_ENVELOPE *a); PKCS7_SIGN_ENVELOPE *d2i_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE * *a, const unsigned char * *in, long len); int i2d_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_SIGN_ENVELOPE_it; PKCS7_DIGEST *PKCS7_DIGEST_new(void); void PKCS7_DIGEST_free(PKCS7_DIGEST *a); PKCS7_DIGEST *d2i_PKCS7_DIGEST(PKCS7_DIGEST * *a, const unsigned char * *in, long len); int i2d_PKCS7_DIGEST(PKCS7_DIGEST *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_DIGEST_it; PKCS7_ENCRYPT *PKCS7_ENCRYPT_new(void); void PKCS7_ENCRYPT_free(PKCS7_ENCRYPT *a); PKCS7_ENCRYPT *d2i_PKCS7_ENCRYPT(PKCS7_ENCRYPT * *a, const unsigned char * *in, long len); int i2d_PKCS7_ENCRYPT(PKCS7_ENCRYPT *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_ENCRYPT_it; PKCS7 *PKCS7_new(void); void PKCS7_free(PKCS7 *a); PKCS7 *d2i_PKCS7(PKCS7 * *a, const unsigned char * *in, long len); int i2d_PKCS7(PKCS7 *a, unsigned char * *out); extern const ASN1_ITEM PKCS7_it; extern const ASN1_ITEM PKCS7_ATTR_SIGN_it; extern const ASN1_ITEM PKCS7_ATTR_VERIFY_it; int i2d_PKCS7_NDEF(PKCS7 *a, unsigned char * *out); int PKCS7_print_ctx(BIO *out, PKCS7 *x, int indent, const ASN1_PCTX *pctx); long PKCS7_ctrl(PKCS7 *p7, int cmd, long larg, char *parg); int PKCS7_set_type(PKCS7 *p7, int type); int PKCS7_set0_type_other(PKCS7 *p7, int type, ASN1_TYPE *other); int PKCS7_set_content(PKCS7 *p7, PKCS7 *p7_data); int PKCS7_SIGNER_INFO_set(PKCS7_SIGNER_INFO *p7i, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); int PKCS7_SIGNER_INFO_sign(PKCS7_SIGNER_INFO *si); int PKCS7_add_signer(PKCS7 *p7, PKCS7_SIGNER_INFO *p7i); int PKCS7_add_certificate(PKCS7 *p7, X509 *x509); int PKCS7_add_crl(PKCS7 *p7, X509_CRL *x509); int PKCS7_content_new(PKCS7 *p7, int nid); int PKCS7_dataVerify(X509_STORE *cert_store, X509_STORE_CTX *ctx, BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_signatureVerify(BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si, X509 *x509); BIO *PKCS7_dataInit(PKCS7 *p7, BIO *bio); int PKCS7_dataFinal(PKCS7 *p7, BIO *bio); BIO *PKCS7_dataDecode(PKCS7 *p7, EVP_PKEY *pkey, BIO *in_bio, X509 *pcert); PKCS7_SIGNER_INFO *PKCS7_add_signature(PKCS7 *p7, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst); X509 *PKCS7_cert_from_signer_info(PKCS7 *p7, PKCS7_SIGNER_INFO *si); int PKCS7_set_digest(PKCS7 *p7, const EVP_MD *md); struct stack_st_PKCS7_SIGNER_INFO *PKCS7_get_signer_info(PKCS7 *p7); PKCS7_RECIP_INFO *PKCS7_add_recipient(PKCS7 *p7, X509 *x509); void PKCS7_SIGNER_INFO_get0_algs(PKCS7_SIGNER_INFO *si, EVP_PKEY **pk, X509_ALGOR **pdig, X509_ALGOR **psig); void PKCS7_RECIP_INFO_get0_alg(PKCS7_RECIP_INFO *ri, X509_ALGOR **penc); int PKCS7_add_recipient_info(PKCS7 *p7, PKCS7_RECIP_INFO *ri); int PKCS7_RECIP_INFO_set(PKCS7_RECIP_INFO *p7i, X509 *x509); int PKCS7_set_cipher(PKCS7 *p7, const EVP_CIPHER *cipher); int PKCS7_stream(unsigned char ***boundary, PKCS7 *p7); PKCS7_ISSUER_AND_SERIAL *PKCS7_get_issuer_and_serial(PKCS7 *p7, int idx); ASN1_OCTET_STRING *PKCS7_digest_from_attributes(struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_add_signed_attribute(PKCS7_SIGNER_INFO *p7si,int nid,int type, void *data); int PKCS7_add_attribute (PKCS7_SIGNER_INFO *p7si, int nid, int atrtype, void *value); ASN1_TYPE *PKCS7_get_attribute(PKCS7_SIGNER_INFO *si, int nid); ASN1_TYPE *PKCS7_get_signed_attribute(PKCS7_SIGNER_INFO *si, int nid); int PKCS7_set_signed_attributes(PKCS7_SIGNER_INFO *p7si, struct stack_st_X509_ATTRIBUTE *sk); int PKCS7_set_attributes(PKCS7_SIGNER_INFO *p7si,struct stack_st_X509_ATTRIBUTE *sk); PKCS7 *PKCS7_sign(X509 *signcert, EVP_PKEY *pkey, struct stack_st_X509 *certs, BIO *data, int flags); PKCS7_SIGNER_INFO *PKCS7_sign_add_signer(PKCS7 *p7, X509 *signcert, EVP_PKEY *pkey, const EVP_MD *md, int flags); int PKCS7_final(PKCS7 *p7, BIO *data, int flags); int PKCS7_verify(PKCS7 *p7, struct stack_st_X509 *certs, X509_STORE *store, BIO *indata, BIO *out, int flags); struct stack_st_X509 *PKCS7_get0_signers(PKCS7 *p7, struct stack_st_X509 *certs, int flags); PKCS7 *PKCS7_encrypt(struct stack_st_X509 *certs, BIO *in, const EVP_CIPHER *cipher, int flags); int PKCS7_decrypt(PKCS7 *p7, EVP_PKEY *pkey, X509 *cert, BIO *data, int flags); int PKCS7_add_attrib_smimecap(PKCS7_SIGNER_INFO *si, struct stack_st_X509_ALGOR *cap); struct stack_st_X509_ALGOR *PKCS7_get_smimecap(PKCS7_SIGNER_INFO *si); int PKCS7_simple_smimecap(struct stack_st_X509_ALGOR *sk, int nid, int arg); int PKCS7_add_attrib_content_type(PKCS7_SIGNER_INFO *si, ASN1_OBJECT *coid); int PKCS7_add0_attrib_signing_time(PKCS7_SIGNER_INFO *si, ASN1_TIME *t); int PKCS7_add1_attrib_digest(PKCS7_SIGNER_INFO *si, const unsigned char *md, int mdlen); int SMIME_write_PKCS7(BIO *bio, PKCS7 *p7, BIO *data, int flags); PKCS7 *SMIME_read_PKCS7(BIO *bio, BIO **bcont); BIO *BIO_new_PKCS7(BIO *out, PKCS7 *p7); void ERR_load_PKCS7_strings(void); # 439 "/glade/apps/opt/usr/include/openssl/pkcs7.h" # 495 "/glade/apps/opt/usr/include/openssl/pkcs7.h" } # 602 "/glade/apps/opt/usr/include/openssl/x509.h" 2 extern "C" { # 620 "/glade/apps/opt/usr/include/openssl/x509.h" void X509_CRL_set_default_method(const X509_CRL_METHOD *meth); X509_CRL_METHOD *X509_CRL_METHOD_new( int (*crl_init)(X509_CRL *crl), int (*crl_free)(X509_CRL *crl), int (*crl_lookup)(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *ser, X509_NAME *issuer), int (*crl_verify)(X509_CRL *crl, EVP_PKEY *pk)); void X509_CRL_METHOD_free(X509_CRL_METHOD *m); void X509_CRL_set_meth_data(X509_CRL *crl, void *dat); void *X509_CRL_get_meth_data(X509_CRL *crl); const char *X509_verify_cert_error_string(long n); int X509_verify(X509 *a, EVP_PKEY *r); int X509_REQ_verify(X509_REQ *a, EVP_PKEY *r); int X509_CRL_verify(X509_CRL *a, EVP_PKEY *r); int NETSCAPE_SPKI_verify(NETSCAPE_SPKI *a, EVP_PKEY *r); NETSCAPE_SPKI * NETSCAPE_SPKI_b64_decode(const char *str, int len); char * NETSCAPE_SPKI_b64_encode(NETSCAPE_SPKI *x); EVP_PKEY *NETSCAPE_SPKI_get_pubkey(NETSCAPE_SPKI *x); int NETSCAPE_SPKI_set_pubkey(NETSCAPE_SPKI *x, EVP_PKEY *pkey); int NETSCAPE_SPKI_print(BIO *out, NETSCAPE_SPKI *spki); int X509_signature_dump(BIO *bp,const ASN1_STRING *sig, int indent); int X509_signature_print(BIO *bp,X509_ALGOR *alg, ASN1_STRING *sig); int X509_sign(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_sign_ctx(X509 *x, EVP_MD_CTX *ctx); int X509_REQ_sign(X509_REQ *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_REQ_sign_ctx(X509_REQ *x, EVP_MD_CTX *ctx); int X509_CRL_sign(X509_CRL *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_CRL_sign_ctx(X509_CRL *x, EVP_MD_CTX *ctx); int NETSCAPE_SPKI_sign(NETSCAPE_SPKI *x, EVP_PKEY *pkey, const EVP_MD *md); int X509_pubkey_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_CRL_digest(const X509_CRL *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_REQ_digest(const X509_REQ *data,const EVP_MD *type, unsigned char *md, unsigned int *len); int X509_NAME_digest(const X509_NAME *data,const EVP_MD *type, unsigned char *md, unsigned int *len); X509 *d2i_X509_fp(FILE *fp, X509 **x509); int i2d_X509_fp(FILE *fp,X509 *x509); X509_CRL *d2i_X509_CRL_fp(FILE *fp,X509_CRL **crl); int i2d_X509_CRL_fp(FILE *fp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_fp(FILE *fp,X509_REQ **req); int i2d_X509_REQ_fp(FILE *fp,X509_REQ *req); RSA *d2i_RSAPrivateKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPrivateKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSAPublicKey_fp(FILE *fp,RSA **rsa); int i2d_RSAPublicKey_fp(FILE *fp,RSA *rsa); RSA *d2i_RSA_PUBKEY_fp(FILE *fp,RSA **rsa); int i2d_RSA_PUBKEY_fp(FILE *fp,RSA *rsa); DSA *d2i_DSA_PUBKEY_fp(FILE *fp, DSA **dsa); int i2d_DSA_PUBKEY_fp(FILE *fp, DSA *dsa); DSA *d2i_DSAPrivateKey_fp(FILE *fp, DSA **dsa); int i2d_DSAPrivateKey_fp(FILE *fp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_fp(FILE *fp, EC_KEY **eckey); int i2d_EC_PUBKEY_fp(FILE *fp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_fp(FILE *fp, EC_KEY **eckey); int i2d_ECPrivateKey_fp(FILE *fp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_fp(FILE *fp,X509_SIG **p8); int i2d_PKCS8_fp(FILE *fp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_fp(FILE *fp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_fp(FILE *fp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_fp(FILE *fp, EVP_PKEY *key); int i2d_PrivateKey_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_fp(FILE *fp, EVP_PKEY **a); int i2d_PUBKEY_fp(FILE *fp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_fp(FILE *fp, EVP_PKEY **a); X509 *d2i_X509_bio(BIO *bp,X509 **x509); int i2d_X509_bio(BIO *bp,X509 *x509); X509_CRL *d2i_X509_CRL_bio(BIO *bp,X509_CRL **crl); int i2d_X509_CRL_bio(BIO *bp,X509_CRL *crl); X509_REQ *d2i_X509_REQ_bio(BIO *bp,X509_REQ **req); int i2d_X509_REQ_bio(BIO *bp,X509_REQ *req); RSA *d2i_RSAPrivateKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPrivateKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSAPublicKey_bio(BIO *bp,RSA **rsa); int i2d_RSAPublicKey_bio(BIO *bp,RSA *rsa); RSA *d2i_RSA_PUBKEY_bio(BIO *bp,RSA **rsa); int i2d_RSA_PUBKEY_bio(BIO *bp,RSA *rsa); DSA *d2i_DSA_PUBKEY_bio(BIO *bp, DSA **dsa); int i2d_DSA_PUBKEY_bio(BIO *bp, DSA *dsa); DSA *d2i_DSAPrivateKey_bio(BIO *bp, DSA **dsa); int i2d_DSAPrivateKey_bio(BIO *bp, DSA *dsa); EC_KEY *d2i_EC_PUBKEY_bio(BIO *bp, EC_KEY **eckey); int i2d_EC_PUBKEY_bio(BIO *bp, EC_KEY *eckey); EC_KEY *d2i_ECPrivateKey_bio(BIO *bp, EC_KEY **eckey); int i2d_ECPrivateKey_bio(BIO *bp, EC_KEY *eckey); X509_SIG *d2i_PKCS8_bio(BIO *bp,X509_SIG **p8); int i2d_PKCS8_bio(BIO *bp,X509_SIG *p8); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_bio(BIO *bp, PKCS8_PRIV_KEY_INFO **p8inf); int i2d_PKCS8_PRIV_KEY_INFO_bio(BIO *bp,PKCS8_PRIV_KEY_INFO *p8inf); int i2d_PKCS8PrivateKeyInfo_bio(BIO *bp, EVP_PKEY *key); int i2d_PrivateKey_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PrivateKey_bio(BIO *bp, EVP_PKEY **a); int i2d_PUBKEY_bio(BIO *bp, EVP_PKEY *pkey); EVP_PKEY *d2i_PUBKEY_bio(BIO *bp, EVP_PKEY **a); X509 *X509_dup(X509 *x509); X509_ATTRIBUTE *X509_ATTRIBUTE_dup(X509_ATTRIBUTE *xa); X509_EXTENSION *X509_EXTENSION_dup(X509_EXTENSION *ex); X509_CRL *X509_CRL_dup(X509_CRL *crl); X509_REQ *X509_REQ_dup(X509_REQ *req); X509_ALGOR *X509_ALGOR_dup(X509_ALGOR *xn); int X509_ALGOR_set0(X509_ALGOR *alg, ASN1_OBJECT *aobj, int ptype, void *pval); void X509_ALGOR_get0(ASN1_OBJECT **paobj, int *pptype, void **ppval, X509_ALGOR *algor); void X509_ALGOR_set_md(X509_ALGOR *alg, const EVP_MD *md); X509_NAME *X509_NAME_dup(X509_NAME *xn); X509_NAME_ENTRY *X509_NAME_ENTRY_dup(X509_NAME_ENTRY *ne); int X509_cmp_time(const ASN1_TIME *s, time_t *t); int X509_cmp_current_time(const ASN1_TIME *s); ASN1_TIME * X509_time_adj(ASN1_TIME *s, long adj, time_t *t); ASN1_TIME * X509_time_adj_ex(ASN1_TIME *s, int offset_day, long offset_sec, time_t *t); ASN1_TIME * X509_gmtime_adj(ASN1_TIME *s, long adj); const char * X509_get_default_cert_area(void ); const char * X509_get_default_cert_dir(void ); const char * X509_get_default_cert_file(void ); const char * X509_get_default_cert_dir_env(void ); const char * X509_get_default_cert_file_env(void ); const char * X509_get_default_private_dir(void ); X509_REQ * X509_to_X509_REQ(X509 *x, EVP_PKEY *pkey, const EVP_MD *md); X509 * X509_REQ_to_X509(X509_REQ *r, int days,EVP_PKEY *pkey); X509_ALGOR *X509_ALGOR_new(void); void X509_ALGOR_free(X509_ALGOR *a); X509_ALGOR *d2i_X509_ALGOR(X509_ALGOR * *a, const unsigned char * *in, long len); int i2d_X509_ALGOR(X509_ALGOR *a, unsigned char * *out); extern const ASN1_ITEM X509_ALGOR_it; X509_ALGORS *d2i_X509_ALGORS(X509_ALGORS * *a, const unsigned char * *in, long len); int i2d_X509_ALGORS(X509_ALGORS *a, unsigned char * *out); extern const ASN1_ITEM X509_ALGORS_it; X509_VAL *X509_VAL_new(void); void X509_VAL_free(X509_VAL *a); X509_VAL *d2i_X509_VAL(X509_VAL * *a, const unsigned char * *in, long len); int i2d_X509_VAL(X509_VAL *a, unsigned char * *out); extern const ASN1_ITEM X509_VAL_it; X509_PUBKEY *X509_PUBKEY_new(void); void X509_PUBKEY_free(X509_PUBKEY *a); X509_PUBKEY *d2i_X509_PUBKEY(X509_PUBKEY * *a, const unsigned char * *in, long len); int i2d_X509_PUBKEY(X509_PUBKEY *a, unsigned char * *out); extern const ASN1_ITEM X509_PUBKEY_it; int X509_PUBKEY_set(X509_PUBKEY **x, EVP_PKEY *pkey); EVP_PKEY * X509_PUBKEY_get(X509_PUBKEY *key); int X509_get_pubkey_parameters(EVP_PKEY *pkey, struct stack_st_X509 *chain); int i2d_PUBKEY(EVP_PKEY *a,unsigned char **pp); EVP_PKEY * d2i_PUBKEY(EVP_PKEY **a,const unsigned char **pp, long length); int i2d_RSA_PUBKEY(RSA *a,unsigned char **pp); RSA * d2i_RSA_PUBKEY(RSA **a,const unsigned char **pp, long length); int i2d_DSA_PUBKEY(DSA *a,unsigned char **pp); DSA * d2i_DSA_PUBKEY(DSA **a,const unsigned char **pp, long length); int i2d_EC_PUBKEY(EC_KEY *a, unsigned char **pp); EC_KEY *d2i_EC_PUBKEY(EC_KEY **a, const unsigned char **pp, long length); X509_SIG *X509_SIG_new(void); void X509_SIG_free(X509_SIG *a); X509_SIG *d2i_X509_SIG(X509_SIG * *a, const unsigned char * *in, long len); int i2d_X509_SIG(X509_SIG *a, unsigned char * *out); extern const ASN1_ITEM X509_SIG_it; X509_REQ_INFO *X509_REQ_INFO_new(void); void X509_REQ_INFO_free(X509_REQ_INFO *a); X509_REQ_INFO *d2i_X509_REQ_INFO(X509_REQ_INFO * *a, const unsigned char * *in, long len); int i2d_X509_REQ_INFO(X509_REQ_INFO *a, unsigned char * *out); extern const ASN1_ITEM X509_REQ_INFO_it; X509_REQ *X509_REQ_new(void); void X509_REQ_free(X509_REQ *a); X509_REQ *d2i_X509_REQ(X509_REQ * *a, const unsigned char * *in, long len); int i2d_X509_REQ(X509_REQ *a, unsigned char * *out); extern const ASN1_ITEM X509_REQ_it; X509_ATTRIBUTE *X509_ATTRIBUTE_new(void); void X509_ATTRIBUTE_free(X509_ATTRIBUTE *a); X509_ATTRIBUTE *d2i_X509_ATTRIBUTE(X509_ATTRIBUTE * *a, const unsigned char * *in, long len); int i2d_X509_ATTRIBUTE(X509_ATTRIBUTE *a, unsigned char * *out); extern const ASN1_ITEM X509_ATTRIBUTE_it; X509_ATTRIBUTE *X509_ATTRIBUTE_create(int nid, int atrtype, void *value); X509_EXTENSION *X509_EXTENSION_new(void); void X509_EXTENSION_free(X509_EXTENSION *a); X509_EXTENSION *d2i_X509_EXTENSION(X509_EXTENSION * *a, const unsigned char * *in, long len); int i2d_X509_EXTENSION(X509_EXTENSION *a, unsigned char * *out); extern const ASN1_ITEM X509_EXTENSION_it; X509_EXTENSIONS *d2i_X509_EXTENSIONS(X509_EXTENSIONS * *a, const unsigned char * *in, long len); int i2d_X509_EXTENSIONS(X509_EXTENSIONS *a, unsigned char * *out); extern const ASN1_ITEM X509_EXTENSIONS_it; X509_NAME_ENTRY *X509_NAME_ENTRY_new(void); void X509_NAME_ENTRY_free(X509_NAME_ENTRY *a); X509_NAME_ENTRY *d2i_X509_NAME_ENTRY(X509_NAME_ENTRY * *a, const unsigned char * *in, long len); int i2d_X509_NAME_ENTRY(X509_NAME_ENTRY *a, unsigned char * *out); extern const ASN1_ITEM X509_NAME_ENTRY_it; X509_NAME *X509_NAME_new(void); void X509_NAME_free(X509_NAME *a); X509_NAME *d2i_X509_NAME(X509_NAME * *a, const unsigned char * *in, long len); int i2d_X509_NAME(X509_NAME *a, unsigned char * *out); extern const ASN1_ITEM X509_NAME_it; int X509_NAME_set(X509_NAME **xn, X509_NAME *name); X509_CINF *X509_CINF_new(void); void X509_CINF_free(X509_CINF *a); X509_CINF *d2i_X509_CINF(X509_CINF * *a, const unsigned char * *in, long len); int i2d_X509_CINF(X509_CINF *a, unsigned char * *out); extern const ASN1_ITEM X509_CINF_it; X509 *X509_new(void); void X509_free(X509 *a); X509 *d2i_X509(X509 * *a, const unsigned char * *in, long len); int i2d_X509(X509 *a, unsigned char * *out); extern const ASN1_ITEM X509_it; X509_CERT_AUX *X509_CERT_AUX_new(void); void X509_CERT_AUX_free(X509_CERT_AUX *a); X509_CERT_AUX *d2i_X509_CERT_AUX(X509_CERT_AUX * *a, const unsigned char * *in, long len); int i2d_X509_CERT_AUX(X509_CERT_AUX *a, unsigned char * *out); extern const ASN1_ITEM X509_CERT_AUX_it; X509_CERT_PAIR *X509_CERT_PAIR_new(void); void X509_CERT_PAIR_free(X509_CERT_PAIR *a); X509_CERT_PAIR *d2i_X509_CERT_PAIR(X509_CERT_PAIR * *a, const unsigned char * *in, long len); int i2d_X509_CERT_PAIR(X509_CERT_PAIR *a, unsigned char * *out); extern const ASN1_ITEM X509_CERT_PAIR_it; int X509_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int X509_set_ex_data(X509 *r, int idx, void *arg); void *X509_get_ex_data(X509 *r, int idx); int i2d_X509_AUX(X509 *a,unsigned char **pp); X509 * d2i_X509_AUX(X509 **a,const unsigned char **pp,long length); int X509_alias_set1(X509 *x, unsigned char *name, int len); int X509_keyid_set1(X509 *x, unsigned char *id, int len); unsigned char * X509_alias_get0(X509 *x, int *len); unsigned char * X509_keyid_get0(X509 *x, int *len); int (*X509_TRUST_set_default(int (*trust)(int , X509 *, int)))(int, X509 *, int); int X509_TRUST_set(int *t, int trust); int X509_add1_trust_object(X509 *x, ASN1_OBJECT *obj); int X509_add1_reject_object(X509 *x, ASN1_OBJECT *obj); void X509_trust_clear(X509 *x); void X509_reject_clear(X509 *x); X509_REVOKED *X509_REVOKED_new(void); void X509_REVOKED_free(X509_REVOKED *a); X509_REVOKED *d2i_X509_REVOKED(X509_REVOKED * *a, const unsigned char * *in, long len); int i2d_X509_REVOKED(X509_REVOKED *a, unsigned char * *out); extern const ASN1_ITEM X509_REVOKED_it; X509_CRL_INFO *X509_CRL_INFO_new(void); void X509_CRL_INFO_free(X509_CRL_INFO *a); X509_CRL_INFO *d2i_X509_CRL_INFO(X509_CRL_INFO * *a, const unsigned char * *in, long len); int i2d_X509_CRL_INFO(X509_CRL_INFO *a, unsigned char * *out); extern const ASN1_ITEM X509_CRL_INFO_it; X509_CRL *X509_CRL_new(void); void X509_CRL_free(X509_CRL *a); X509_CRL *d2i_X509_CRL(X509_CRL * *a, const unsigned char * *in, long len); int i2d_X509_CRL(X509_CRL *a, unsigned char * *out); extern const ASN1_ITEM X509_CRL_it; int X509_CRL_add0_revoked(X509_CRL *crl, X509_REVOKED *rev); int X509_CRL_get0_by_serial(X509_CRL *crl, X509_REVOKED **ret, ASN1_INTEGER *serial); int X509_CRL_get0_by_cert(X509_CRL *crl, X509_REVOKED **ret, X509 *x); X509_PKEY * X509_PKEY_new(void ); void X509_PKEY_free(X509_PKEY *a); int i2d_X509_PKEY(X509_PKEY *a,unsigned char **pp); X509_PKEY * d2i_X509_PKEY(X509_PKEY **a,const unsigned char **pp,long length); NETSCAPE_SPKI *NETSCAPE_SPKI_new(void); void NETSCAPE_SPKI_free(NETSCAPE_SPKI *a); NETSCAPE_SPKI *d2i_NETSCAPE_SPKI(NETSCAPE_SPKI * *a, const unsigned char * *in, long len); int i2d_NETSCAPE_SPKI(NETSCAPE_SPKI *a, unsigned char * *out); extern const ASN1_ITEM NETSCAPE_SPKI_it; NETSCAPE_SPKAC *NETSCAPE_SPKAC_new(void); void NETSCAPE_SPKAC_free(NETSCAPE_SPKAC *a); NETSCAPE_SPKAC *d2i_NETSCAPE_SPKAC(NETSCAPE_SPKAC * *a, const unsigned char * *in, long len); int i2d_NETSCAPE_SPKAC(NETSCAPE_SPKAC *a, unsigned char * *out); extern const ASN1_ITEM NETSCAPE_SPKAC_it; NETSCAPE_CERT_SEQUENCE *NETSCAPE_CERT_SEQUENCE_new(void); void NETSCAPE_CERT_SEQUENCE_free(NETSCAPE_CERT_SEQUENCE *a); NETSCAPE_CERT_SEQUENCE *d2i_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE * *a, const unsigned char * *in, long len); int i2d_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE *a, unsigned char * *out); extern const ASN1_ITEM NETSCAPE_CERT_SEQUENCE_it; X509_INFO * X509_INFO_new(void); void X509_INFO_free(X509_INFO *a); char * X509_NAME_oneline(X509_NAME *a,char *buf,int size); int ASN1_verify(i2d_of_void *i2d, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,char *data,EVP_PKEY *pkey); int ASN1_digest(i2d_of_void *i2d,const EVP_MD *type,char *data, unsigned char *md,unsigned int *len); int ASN1_sign(i2d_of_void *i2d, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, char *data,EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_digest(const ASN1_ITEM *it,const EVP_MD *type,void *data, unsigned char *md,unsigned int *len); int ASN1_item_verify(const ASN1_ITEM *it, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,void *data,EVP_PKEY *pkey); int ASN1_item_sign(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *data, EVP_PKEY *pkey, const EVP_MD *type); int ASN1_item_sign_ctx(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *asn, EVP_MD_CTX *ctx); int X509_set_version(X509 *x,long version); int X509_set_serialNumber(X509 *x, ASN1_INTEGER *serial); ASN1_INTEGER * X509_get_serialNumber(X509 *x); int X509_set_issuer_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_issuer_name(X509 *a); int X509_set_subject_name(X509 *x, X509_NAME *name); X509_NAME * X509_get_subject_name(X509 *a); int X509_set_notBefore(X509 *x, const ASN1_TIME *tm); int X509_set_notAfter(X509 *x, const ASN1_TIME *tm); int X509_set_pubkey(X509 *x, EVP_PKEY *pkey); EVP_PKEY * X509_get_pubkey(X509 *x); ASN1_BIT_STRING * X509_get0_pubkey_bitstr(const X509 *x); int X509_certificate_type(X509 *x,EVP_PKEY *pubkey ); int X509_REQ_set_version(X509_REQ *x,long version); int X509_REQ_set_subject_name(X509_REQ *req,X509_NAME *name); int X509_REQ_set_pubkey(X509_REQ *x, EVP_PKEY *pkey); EVP_PKEY * X509_REQ_get_pubkey(X509_REQ *req); int X509_REQ_extension_nid(int nid); int * X509_REQ_get_extension_nids(void); void X509_REQ_set_extension_nids(int *nids); struct stack_st_X509_EXTENSION *X509_REQ_get_extensions(X509_REQ *req); int X509_REQ_add_extensions_nid(X509_REQ *req, struct stack_st_X509_EXTENSION *exts, int nid); int X509_REQ_add_extensions(X509_REQ *req, struct stack_st_X509_EXTENSION *exts); int X509_REQ_get_attr_count(const X509_REQ *req); int X509_REQ_get_attr_by_NID(const X509_REQ *req, int nid, int lastpos); int X509_REQ_get_attr_by_OBJ(const X509_REQ *req, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509_REQ_get_attr(const X509_REQ *req, int loc); X509_ATTRIBUTE *X509_REQ_delete_attr(X509_REQ *req, int loc); int X509_REQ_add1_attr(X509_REQ *req, X509_ATTRIBUTE *attr); int X509_REQ_add1_attr_by_OBJ(X509_REQ *req, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_NID(X509_REQ *req, int nid, int type, const unsigned char *bytes, int len); int X509_REQ_add1_attr_by_txt(X509_REQ *req, const char *attrname, int type, const unsigned char *bytes, int len); int X509_CRL_set_version(X509_CRL *x, long version); int X509_CRL_set_issuer_name(X509_CRL *x, X509_NAME *name); int X509_CRL_set_lastUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_set_nextUpdate(X509_CRL *x, const ASN1_TIME *tm); int X509_CRL_sort(X509_CRL *crl); int X509_REVOKED_set_serialNumber(X509_REVOKED *x, ASN1_INTEGER *serial); int X509_REVOKED_set_revocationDate(X509_REVOKED *r, ASN1_TIME *tm); int X509_REQ_check_private_key(X509_REQ *x509,EVP_PKEY *pkey); int X509_check_private_key(X509 *x509,EVP_PKEY *pkey); int X509_issuer_and_serial_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_and_serial_hash(X509 *a); int X509_issuer_name_cmp(const X509 *a, const X509 *b); unsigned long X509_issuer_name_hash(X509 *a); int X509_subject_name_cmp(const X509 *a, const X509 *b); unsigned long X509_subject_name_hash(X509 *x); unsigned long X509_issuer_name_hash_old(X509 *a); unsigned long X509_subject_name_hash_old(X509 *x); int X509_cmp(const X509 *a, const X509 *b); int X509_NAME_cmp(const X509_NAME *a, const X509_NAME *b); unsigned long X509_NAME_hash(X509_NAME *x); unsigned long X509_NAME_hash_old(X509_NAME *x); int X509_CRL_cmp(const X509_CRL *a, const X509_CRL *b); int X509_CRL_match(const X509_CRL *a, const X509_CRL *b); int X509_print_ex_fp(FILE *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print_fp(FILE *bp,X509 *x); int X509_CRL_print_fp(FILE *bp,X509_CRL *x); int X509_REQ_print_fp(FILE *bp,X509_REQ *req); int X509_NAME_print_ex_fp(FILE *fp, X509_NAME *nm, int indent, unsigned long flags); int X509_NAME_print(BIO *bp, X509_NAME *name, int obase); int X509_NAME_print_ex(BIO *out, X509_NAME *nm, int indent, unsigned long flags); int X509_print_ex(BIO *bp,X509 *x, unsigned long nmflag, unsigned long cflag); int X509_print(BIO *bp,X509 *x); int X509_ocspid_print(BIO *bp,X509 *x); int X509_CERT_AUX_print(BIO *bp,X509_CERT_AUX *x, int indent); int X509_CRL_print(BIO *bp,X509_CRL *x); int X509_REQ_print_ex(BIO *bp, X509_REQ *x, unsigned long nmflag, unsigned long cflag); int X509_REQ_print(BIO *bp,X509_REQ *req); int X509_NAME_entry_count(X509_NAME *name); int X509_NAME_get_text_by_NID(X509_NAME *name, int nid, char *buf,int len); int X509_NAME_get_text_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, char *buf,int len); int X509_NAME_get_index_by_NID(X509_NAME *name,int nid,int lastpos); int X509_NAME_get_index_by_OBJ(X509_NAME *name,ASN1_OBJECT *obj, int lastpos); X509_NAME_ENTRY *X509_NAME_get_entry(X509_NAME *name, int loc); X509_NAME_ENTRY *X509_NAME_delete_entry(X509_NAME *name, int loc); int X509_NAME_add_entry(X509_NAME *name,X509_NAME_ENTRY *ne, int loc, int set); int X509_NAME_add_entry_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, int type, unsigned char *bytes, int len, int loc, int set); int X509_NAME_add_entry_by_NID(X509_NAME *name, int nid, int type, unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_txt(X509_NAME_ENTRY **ne, const char *field, int type, const unsigned char *bytes, int len); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_NID(X509_NAME_ENTRY **ne, int nid, int type,unsigned char *bytes, int len); int X509_NAME_add_entry_by_txt(X509_NAME *name, const char *field, int type, const unsigned char *bytes, int len, int loc, int set); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_OBJ(X509_NAME_ENTRY **ne, ASN1_OBJECT *obj, int type,const unsigned char *bytes, int len); int X509_NAME_ENTRY_set_object(X509_NAME_ENTRY *ne, ASN1_OBJECT *obj); int X509_NAME_ENTRY_set_data(X509_NAME_ENTRY *ne, int type, const unsigned char *bytes, int len); ASN1_OBJECT * X509_NAME_ENTRY_get_object(X509_NAME_ENTRY *ne); ASN1_STRING * X509_NAME_ENTRY_get_data(X509_NAME_ENTRY *ne); int X509v3_get_ext_count(const struct stack_st_X509_EXTENSION *x); int X509v3_get_ext_by_NID(const struct stack_st_X509_EXTENSION *x, int nid, int lastpos); int X509v3_get_ext_by_OBJ(const struct stack_st_X509_EXTENSION *x, ASN1_OBJECT *obj,int lastpos); int X509v3_get_ext_by_critical(const struct stack_st_X509_EXTENSION *x, int crit, int lastpos); X509_EXTENSION *X509v3_get_ext(const struct stack_st_X509_EXTENSION *x, int loc); X509_EXTENSION *X509v3_delete_ext(struct stack_st_X509_EXTENSION *x, int loc); struct stack_st_X509_EXTENSION *X509v3_add_ext(struct stack_st_X509_EXTENSION **x, X509_EXTENSION *ex, int loc); int X509_get_ext_count(X509 *x); int X509_get_ext_by_NID(X509 *x, int nid, int lastpos); int X509_get_ext_by_OBJ(X509 *x,ASN1_OBJECT *obj,int lastpos); int X509_get_ext_by_critical(X509 *x, int crit, int lastpos); X509_EXTENSION *X509_get_ext(X509 *x, int loc); X509_EXTENSION *X509_delete_ext(X509 *x, int loc); int X509_add_ext(X509 *x, X509_EXTENSION *ex, int loc); void * X509_get_ext_d2i(X509 *x, int nid, int *crit, int *idx); int X509_add1_ext_i2d(X509 *x, int nid, void *value, int crit, unsigned long flags); int X509_CRL_get_ext_count(X509_CRL *x); int X509_CRL_get_ext_by_NID(X509_CRL *x, int nid, int lastpos); int X509_CRL_get_ext_by_OBJ(X509_CRL *x,ASN1_OBJECT *obj,int lastpos); int X509_CRL_get_ext_by_critical(X509_CRL *x, int crit, int lastpos); X509_EXTENSION *X509_CRL_get_ext(X509_CRL *x, int loc); X509_EXTENSION *X509_CRL_delete_ext(X509_CRL *x, int loc); int X509_CRL_add_ext(X509_CRL *x, X509_EXTENSION *ex, int loc); void * X509_CRL_get_ext_d2i(X509_CRL *x, int nid, int *crit, int *idx); int X509_CRL_add1_ext_i2d(X509_CRL *x, int nid, void *value, int crit, unsigned long flags); int X509_REVOKED_get_ext_count(X509_REVOKED *x); int X509_REVOKED_get_ext_by_NID(X509_REVOKED *x, int nid, int lastpos); int X509_REVOKED_get_ext_by_OBJ(X509_REVOKED *x,ASN1_OBJECT *obj,int lastpos); int X509_REVOKED_get_ext_by_critical(X509_REVOKED *x, int crit, int lastpos); X509_EXTENSION *X509_REVOKED_get_ext(X509_REVOKED *x, int loc); X509_EXTENSION *X509_REVOKED_delete_ext(X509_REVOKED *x, int loc); int X509_REVOKED_add_ext(X509_REVOKED *x, X509_EXTENSION *ex, int loc); void * X509_REVOKED_get_ext_d2i(X509_REVOKED *x, int nid, int *crit, int *idx); int X509_REVOKED_add1_ext_i2d(X509_REVOKED *x, int nid, void *value, int crit, unsigned long flags); X509_EXTENSION *X509_EXTENSION_create_by_NID(X509_EXTENSION **ex, int nid, int crit, ASN1_OCTET_STRING *data); X509_EXTENSION *X509_EXTENSION_create_by_OBJ(X509_EXTENSION **ex, ASN1_OBJECT *obj,int crit,ASN1_OCTET_STRING *data); int X509_EXTENSION_set_object(X509_EXTENSION *ex,ASN1_OBJECT *obj); int X509_EXTENSION_set_critical(X509_EXTENSION *ex, int crit); int X509_EXTENSION_set_data(X509_EXTENSION *ex, ASN1_OCTET_STRING *data); ASN1_OBJECT * X509_EXTENSION_get_object(X509_EXTENSION *ex); ASN1_OCTET_STRING *X509_EXTENSION_get_data(X509_EXTENSION *ne); int X509_EXTENSION_get_critical(X509_EXTENSION *ex); int X509at_get_attr_count(const struct stack_st_X509_ATTRIBUTE *x); int X509at_get_attr_by_NID(const struct stack_st_X509_ATTRIBUTE *x, int nid, int lastpos); int X509at_get_attr_by_OBJ(const struct stack_st_X509_ATTRIBUTE *sk, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *X509at_get_attr(const struct stack_st_X509_ATTRIBUTE *x, int loc); X509_ATTRIBUTE *X509at_delete_attr(struct stack_st_X509_ATTRIBUTE *x, int loc); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr(struct stack_st_X509_ATTRIBUTE **x, X509_ATTRIBUTE *attr); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_OBJ(struct stack_st_X509_ATTRIBUTE **x, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_NID(struct stack_st_X509_ATTRIBUTE **x, int nid, int type, const unsigned char *bytes, int len); struct stack_st_X509_ATTRIBUTE *X509at_add1_attr_by_txt(struct stack_st_X509_ATTRIBUTE **x, const char *attrname, int type, const unsigned char *bytes, int len); void *X509at_get0_data_by_OBJ(struct stack_st_X509_ATTRIBUTE *x, ASN1_OBJECT *obj, int lastpos, int type); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_NID(X509_ATTRIBUTE **attr, int nid, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_OBJ(X509_ATTRIBUTE **attr, const ASN1_OBJECT *obj, int atrtype, const void *data, int len); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_txt(X509_ATTRIBUTE **attr, const char *atrname, int type, const unsigned char *bytes, int len); int X509_ATTRIBUTE_set1_object(X509_ATTRIBUTE *attr, const ASN1_OBJECT *obj); int X509_ATTRIBUTE_set1_data(X509_ATTRIBUTE *attr, int attrtype, const void *data, int len); void *X509_ATTRIBUTE_get0_data(X509_ATTRIBUTE *attr, int idx, int atrtype, void *data); int X509_ATTRIBUTE_count(X509_ATTRIBUTE *attr); ASN1_OBJECT *X509_ATTRIBUTE_get0_object(X509_ATTRIBUTE *attr); ASN1_TYPE *X509_ATTRIBUTE_get0_type(X509_ATTRIBUTE *attr, int idx); int EVP_PKEY_get_attr_count(const EVP_PKEY *key); int EVP_PKEY_get_attr_by_NID(const EVP_PKEY *key, int nid, int lastpos); int EVP_PKEY_get_attr_by_OBJ(const EVP_PKEY *key, ASN1_OBJECT *obj, int lastpos); X509_ATTRIBUTE *EVP_PKEY_get_attr(const EVP_PKEY *key, int loc); X509_ATTRIBUTE *EVP_PKEY_delete_attr(EVP_PKEY *key, int loc); int EVP_PKEY_add1_attr(EVP_PKEY *key, X509_ATTRIBUTE *attr); int EVP_PKEY_add1_attr_by_OBJ(EVP_PKEY *key, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_NID(EVP_PKEY *key, int nid, int type, const unsigned char *bytes, int len); int EVP_PKEY_add1_attr_by_txt(EVP_PKEY *key, const char *attrname, int type, const unsigned char *bytes, int len); int X509_verify_cert(X509_STORE_CTX *ctx); X509 *X509_find_by_issuer_and_serial(struct stack_st_X509 *sk,X509_NAME *name, ASN1_INTEGER *serial); X509 *X509_find_by_subject(struct stack_st_X509 *sk,X509_NAME *name); PBEPARAM *PBEPARAM_new(void); void PBEPARAM_free(PBEPARAM *a); PBEPARAM *d2i_PBEPARAM(PBEPARAM * *a, const unsigned char * *in, long len); int i2d_PBEPARAM(PBEPARAM *a, unsigned char * *out); extern const ASN1_ITEM PBEPARAM_it; PBE2PARAM *PBE2PARAM_new(void); void PBE2PARAM_free(PBE2PARAM *a); PBE2PARAM *d2i_PBE2PARAM(PBE2PARAM * *a, const unsigned char * *in, long len); int i2d_PBE2PARAM(PBE2PARAM *a, unsigned char * *out); extern const ASN1_ITEM PBE2PARAM_it; PBKDF2PARAM *PBKDF2PARAM_new(void); void PBKDF2PARAM_free(PBKDF2PARAM *a); PBKDF2PARAM *d2i_PBKDF2PARAM(PBKDF2PARAM * *a, const unsigned char * *in, long len); int i2d_PBKDF2PARAM(PBKDF2PARAM *a, unsigned char * *out); extern const ASN1_ITEM PBKDF2PARAM_it; int PKCS5_pbe_set0_algor(X509_ALGOR *algor, int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe_set(int alg, int iter, const unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen); X509_ALGOR *PKCS5_pbe2_set_iv(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen, unsigned char *aiv, int prf_nid); X509_ALGOR *PKCS5_pbkdf2_set(int iter, unsigned char *salt, int saltlen, int prf_nid, int keylen); PKCS8_PRIV_KEY_INFO *PKCS8_PRIV_KEY_INFO_new(void); void PKCS8_PRIV_KEY_INFO_free(PKCS8_PRIV_KEY_INFO *a); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO * *a, const unsigned char * *in, long len); int i2d_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO *a, unsigned char * *out); extern const ASN1_ITEM PKCS8_PRIV_KEY_INFO_it; EVP_PKEY *EVP_PKCS82PKEY(PKCS8_PRIV_KEY_INFO *p8); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8(EVP_PKEY *pkey); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8_broken(EVP_PKEY *pkey, int broken); PKCS8_PRIV_KEY_INFO *PKCS8_set_broken(PKCS8_PRIV_KEY_INFO *p8, int broken); int PKCS8_pkey_set0(PKCS8_PRIV_KEY_INFO *priv, ASN1_OBJECT *aobj, int version, int ptype, void *pval, unsigned char *penc, int penclen); int PKCS8_pkey_get0(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, PKCS8_PRIV_KEY_INFO *p8); int X509_PUBKEY_set0_param(X509_PUBKEY *pub, ASN1_OBJECT *aobj, int ptype, void *pval, unsigned char *penc, int penclen); int X509_PUBKEY_get0_param(ASN1_OBJECT **ppkalg, const unsigned char **pk, int *ppklen, X509_ALGOR **pa, X509_PUBKEY *pub); int X509_check_trust(X509 *x, int id, int flags); int X509_TRUST_get_count(void); X509_TRUST * X509_TRUST_get0(int idx); int X509_TRUST_get_by_id(int id); int X509_TRUST_add(int id, int flags, int (*ck)(X509_TRUST *, X509 *, int), char *name, int arg1, void *arg2); void X509_TRUST_cleanup(void); int X509_TRUST_get_flags(X509_TRUST *xp); char *X509_TRUST_get0_name(X509_TRUST *xp); int X509_TRUST_get_trust(X509_TRUST *xp); void ERR_load_X509_strings(void); # 1265 "/glade/apps/opt/usr/include/openssl/x509.h" # 1293 "/glade/apps/opt/usr/include/openssl/x509.h" } # 157 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/pem.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/e_os2.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 57 "/glade/apps/opt/usr/include/openssl/e_os2.h" 2 # 63 "/glade/apps/opt/usr/include/openssl/pem.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/pem2.h" 1 extern "C" { } # 72 "/glade/apps/opt/usr/include/openssl/pem.h" 2 extern "C" { # 97 "/glade/apps/opt/usr/include/openssl/pem.h" # 106 "/glade/apps/opt/usr/include/openssl/pem.h" # 113 "/glade/apps/opt/usr/include/openssl/pem.h" # 139 "/glade/apps/opt/usr/include/openssl/pem.h" typedef struct PEM_Encode_Seal_st { EVP_ENCODE_CTX encode; EVP_MD_CTX md; EVP_CIPHER_CTX cipher; } PEM_ENCODE_SEAL_CTX; typedef struct pem_recip_st { char *name; X509_NAME *dn; int cipher; int key_enc; } PEM_USER; typedef struct pem_ctx_st { int type; struct { int version; int mode; } proc_type; char *domain; struct { int cipher; } DEK_info; PEM_USER *originator; int num_recipient; PEM_USER **recipient; EVP_MD *md; int md_enc; int md_len; char *md_data; EVP_CIPHER *dec; int key_len; unsigned char *key; int data_enc; int data_len; unsigned char *data; } PEM_CTX; # 221 "/glade/apps/opt/usr/include/openssl/pem.h" # 247 "/glade/apps/opt/usr/include/openssl/pem.h" # 255 "/glade/apps/opt/usr/include/openssl/pem.h" # 282 "/glade/apps/opt/usr/include/openssl/pem.h" # 289 "/glade/apps/opt/usr/include/openssl/pem.h" # 331 "/glade/apps/opt/usr/include/openssl/pem.h" # 369 "/glade/apps/opt/usr/include/openssl/pem.h" typedef int pem_password_cb(char *buf, int size, int rwflag, void *userdata); int PEM_get_EVP_CIPHER_INFO(char *header, EVP_CIPHER_INFO *cipher); int PEM_do_header (EVP_CIPHER_INFO *cipher, unsigned char *data,long *len, pem_password_cb *callback,void *u); int PEM_read_bio(BIO *bp, char **name, char **header, unsigned char **data,long *len); int PEM_write_bio(BIO *bp,const char *name,char *hdr,unsigned char *data, long len); int PEM_bytes_read_bio(unsigned char **pdata, long *plen, char **pnm, const char *name, BIO *bp, pem_password_cb *cb, void *u); void * PEM_ASN1_read_bio(d2i_of_void *d2i, const char *name, BIO *bp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write_bio(i2d_of_void *i2d,const char *name,BIO *bp, void *x, const EVP_CIPHER *enc,unsigned char *kstr,int klen, pem_password_cb *cb, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read_bio(BIO *bp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_X509_INFO_write_bio(BIO *bp,X509_INFO *xi, EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cd, void *u); int PEM_read(FILE *fp, char **name, char **header, unsigned char **data,long *len); int PEM_write(FILE *fp,char *name,char *hdr,unsigned char *data,long len); void * PEM_ASN1_read(d2i_of_void *d2i, const char *name, FILE *fp, void **x, pem_password_cb *cb, void *u); int PEM_ASN1_write(i2d_of_void *i2d,const char *name,FILE *fp, void *x,const EVP_CIPHER *enc,unsigned char *kstr, int klen,pem_password_cb *callback, void *u); struct stack_st_X509_INFO * PEM_X509_INFO_read(FILE *fp, struct stack_st_X509_INFO *sk, pem_password_cb *cb, void *u); int PEM_SealInit(PEM_ENCODE_SEAL_CTX *ctx, EVP_CIPHER *type, EVP_MD *md_type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk); void PEM_SealUpdate(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *out, int *outl, unsigned char *in, int inl); int PEM_SealFinal(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *sig,int *sigl, unsigned char *out, int *outl, EVP_PKEY *priv); void PEM_SignInit(EVP_MD_CTX *ctx, EVP_MD *type); void PEM_SignUpdate(EVP_MD_CTX *ctx,unsigned char *d,unsigned int cnt); int PEM_SignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, unsigned int *siglen, EVP_PKEY *pkey); int PEM_def_callback(char *buf, int num, int w, void *key); void PEM_proc_type(char *buf, int type); void PEM_dek_info(char *buf, const char *type, int len, char *str); X509 *PEM_read_bio_X509(BIO *bp, X509 * *x, pem_password_cb *cb, void *u); X509 *PEM_read_X509(FILE *fp, X509 * *x, pem_password_cb *cb, void *u); int PEM_write_bio_X509(BIO *bp, X509 *x); int PEM_write_X509(FILE *fp, X509 *x); X509 *PEM_read_bio_X509_AUX(BIO *bp, X509 * *x, pem_password_cb *cb, void *u); X509 *PEM_read_X509_AUX(FILE *fp, X509 * *x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_AUX(BIO *bp, X509 *x); int PEM_write_X509_AUX(FILE *fp, X509 *x); X509_CERT_PAIR *PEM_read_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR * *x, pem_password_cb *cb, void *u); X509_CERT_PAIR *PEM_read_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR * *x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR *x); int PEM_write_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR *x); X509_REQ *PEM_read_bio_X509_REQ(BIO *bp, X509_REQ * *x, pem_password_cb *cb, void *u); X509_REQ *PEM_read_X509_REQ(FILE *fp, X509_REQ * *x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_REQ(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ(FILE *fp, X509_REQ *x); int PEM_write_bio_X509_REQ_NEW(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ_NEW(FILE *fp, X509_REQ *x); X509_CRL *PEM_read_bio_X509_CRL(BIO *bp, X509_CRL * *x, pem_password_cb *cb, void *u); X509_CRL *PEM_read_X509_CRL(FILE *fp, X509_CRL * *x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CRL(BIO *bp, X509_CRL *x); int PEM_write_X509_CRL(FILE *fp, X509_CRL *x); PKCS7 *PEM_read_bio_PKCS7(BIO *bp, PKCS7 * *x, pem_password_cb *cb, void *u); PKCS7 *PEM_read_PKCS7(FILE *fp, PKCS7 * *x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS7(BIO *bp, PKCS7 *x); int PEM_write_PKCS7(FILE *fp, PKCS7 *x); NETSCAPE_CERT_SEQUENCE *PEM_read_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE * *x, pem_password_cb *cb, void *u); NETSCAPE_CERT_SEQUENCE *PEM_read_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE * *x, pem_password_cb *cb, void *u); int PEM_write_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE *x); int PEM_write_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE *x); X509_SIG *PEM_read_bio_PKCS8(BIO *bp, X509_SIG * *x, pem_password_cb *cb, void *u); X509_SIG *PEM_read_PKCS8(FILE *fp, X509_SIG * *x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8(BIO *bp, X509_SIG *x); int PEM_write_PKCS8(FILE *fp, X509_SIG *x); PKCS8_PRIV_KEY_INFO *PEM_read_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO * *x, pem_password_cb *cb, void *u); PKCS8_PRIV_KEY_INFO *PEM_read_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO * *x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO *x); int PEM_write_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO *x); RSA *PEM_read_bio_RSAPrivateKey(BIO *bp, RSA * *x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPrivateKey(FILE *fp, RSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPrivateKey(BIO *bp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_RSAPrivateKey(FILE *fp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); RSA *PEM_read_bio_RSAPublicKey(BIO *bp, RSA * *x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPublicKey(FILE *fp, RSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPublicKey(BIO *bp, const RSA *x); int PEM_write_RSAPublicKey(FILE *fp, const RSA *x); RSA *PEM_read_bio_RSA_PUBKEY(BIO *bp, RSA * *x, pem_password_cb *cb, void *u); RSA *PEM_read_RSA_PUBKEY(FILE *fp, RSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_RSA_PUBKEY(BIO *bp, RSA *x); int PEM_write_RSA_PUBKEY(FILE *fp, RSA *x); DSA *PEM_read_bio_DSAPrivateKey(BIO *bp, DSA * *x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAPrivateKey(FILE *fp, DSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAPrivateKey(BIO *bp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_DSAPrivateKey(FILE *fp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); DSA *PEM_read_bio_DSA_PUBKEY(BIO *bp, DSA * *x, pem_password_cb *cb, void *u); DSA *PEM_read_DSA_PUBKEY(FILE *fp, DSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_DSA_PUBKEY(BIO *bp, DSA *x); int PEM_write_DSA_PUBKEY(FILE *fp, DSA *x); DSA *PEM_read_bio_DSAparams(BIO *bp, DSA * *x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAparams(FILE *fp, DSA * *x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAparams(BIO *bp, const DSA *x); int PEM_write_DSAparams(FILE *fp, const DSA *x); EC_GROUP *PEM_read_bio_ECPKParameters(BIO *bp, EC_GROUP * *x, pem_password_cb *cb, void *u); EC_GROUP *PEM_read_ECPKParameters(FILE *fp, EC_GROUP * *x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPKParameters(BIO *bp, const EC_GROUP *x); int PEM_write_ECPKParameters(FILE *fp, const EC_GROUP *x); EC_KEY *PEM_read_bio_ECPrivateKey(BIO *bp, EC_KEY * *x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_ECPrivateKey(FILE *fp, EC_KEY * *x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPrivateKey(BIO *bp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_ECPrivateKey(FILE *fp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EC_KEY *PEM_read_bio_EC_PUBKEY(BIO *bp, EC_KEY * *x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_EC_PUBKEY(FILE *fp, EC_KEY * *x, pem_password_cb *cb, void *u); int PEM_write_bio_EC_PUBKEY(BIO *bp, EC_KEY *x); int PEM_write_EC_PUBKEY(FILE *fp, EC_KEY *x); DH *PEM_read_bio_DHparams(BIO *bp, DH * *x, pem_password_cb *cb, void *u); DH *PEM_read_DHparams(FILE *fp, DH * *x, pem_password_cb *cb, void *u); int PEM_write_bio_DHparams(BIO *bp, const DH *x); int PEM_write_DHparams(FILE *fp, const DH *x); EVP_PKEY *PEM_read_bio_PrivateKey(BIO *bp, EVP_PKEY * *x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PrivateKey(FILE *fp, EVP_PKEY * *x, pem_password_cb *cb, void *u); int PEM_write_bio_PrivateKey(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PrivateKey(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_bio_PUBKEY(BIO *bp, EVP_PKEY * *x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PUBKEY(FILE *fp, EVP_PKEY * *x, pem_password_cb *cb, void *u); int PEM_write_bio_PUBKEY(BIO *bp, EVP_PKEY *x); int PEM_write_PUBKEY(FILE *fp, EVP_PKEY *x); int PEM_write_bio_PKCS8PrivateKey_nid(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8PrivateKey(BIO *, EVP_PKEY *, const EVP_CIPHER *, char *, int, pem_password_cb *, void *); int i2d_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_bio(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u); int i2d_PKCS8PrivateKey_nid_fp(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey_nid(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *d2i_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_PKCS8PrivateKey(FILE *fp,EVP_PKEY *x,const EVP_CIPHER *enc, char *kstr,int klen, pem_password_cb *cd, void *u); EVP_PKEY *PEM_read_bio_Parameters(BIO *bp, EVP_PKEY **x); int PEM_write_bio_Parameters(BIO *bp, EVP_PKEY *x); EVP_PKEY *b2i_PrivateKey(const unsigned char **in, long length); EVP_PKEY *b2i_PublicKey(const unsigned char **in, long length); EVP_PKEY *b2i_PrivateKey_bio(BIO *in); EVP_PKEY *b2i_PublicKey_bio(BIO *in); int i2b_PrivateKey_bio(BIO *out, EVP_PKEY *pk); int i2b_PublicKey_bio(BIO *out, EVP_PKEY *pk); EVP_PKEY *b2i_PVK_bio(BIO *in, pem_password_cb *cb, void *u); int i2b_PVK_bio(BIO *out, EVP_PKEY *pk, int enclevel, pem_password_cb *cb, void *u); void ERR_load_PEM_strings(void); # 607 "/glade/apps/opt/usr/include/openssl/pem.h" # 637 "/glade/apps/opt/usr/include/openssl/pem.h" } # 163 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/hmac.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 62 "/glade/apps/opt/usr/include/openssl/hmac.h" 2 extern "C" { typedef struct hmac_ctx_st { const EVP_MD *md; EVP_MD_CTX md_ctx; EVP_MD_CTX i_ctx; EVP_MD_CTX o_ctx; unsigned int key_length; unsigned char key[128]; } HMAC_CTX; void HMAC_CTX_init(HMAC_CTX *ctx); void HMAC_CTX_cleanup(HMAC_CTX *ctx); int HMAC_Init(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md); int HMAC_Init_ex(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md, ENGINE *impl); int HMAC_Update(HMAC_CTX *ctx, const unsigned char *data, size_t len); int HMAC_Final(HMAC_CTX *ctx, unsigned char *md, unsigned int *len); unsigned char *HMAC(const EVP_MD *evp_md, const void *key, int key_len, const unsigned char *d, size_t n, unsigned char *md, unsigned int *md_len); int HMAC_CTX_copy(HMAC_CTX *dctx, HMAC_CTX *sctx); void HMAC_CTX_set_flags(HMAC_CTX *ctx, unsigned long flags); } # 164 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/kssl.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/opensslconf.h" 1 # 35 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 44 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 78 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 92 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 130 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 138 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 150 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 157 "/glade/apps/opt/usr/include/openssl/opensslconf.h" # 67 "/glade/apps/opt/usr/include/openssl/kssl.h" 2 # 166 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 extern "C" { # 190 "/glade/apps/opt/usr/include/openssl/ssl.h" # 201 "/glade/apps/opt/usr/include/openssl/ssl.h" # 208 "/glade/apps/opt/usr/include/openssl/ssl.h" # 216 "/glade/apps/opt/usr/include/openssl/ssl.h" # 233 "/glade/apps/opt/usr/include/openssl/ssl.h" # 256 "/glade/apps/opt/usr/include/openssl/ssl.h" # 267 "/glade/apps/opt/usr/include/openssl/ssl.h" # 280 "/glade/apps/opt/usr/include/openssl/ssl.h" # 294 "/glade/apps/opt/usr/include/openssl/ssl.h" # 302 "/glade/apps/opt/usr/include/openssl/ssl.h" } extern "C" { typedef struct ssl_st *ssl_crock_st; typedef struct tls_session_ticket_ext_st TLS_SESSION_TICKET_EXT; typedef struct ssl_method_st SSL_METHOD; typedef struct ssl_cipher_st SSL_CIPHER; typedef struct ssl_session_st SSL_SESSION; struct stack_st_SSL_CIPHER { _STACK stack; }; typedef struct srtp_protection_profile_st { const char *name; unsigned long id; } SRTP_PROTECTION_PROFILE; struct stack_st_SRTP_PROTECTION_PROFILE { _STACK stack; }; typedef int (*tls_session_ticket_ext_cb_fn)(SSL *s, const unsigned char *data, int len, void *arg); typedef int (*tls_session_secret_cb_fn)(SSL *s, void *secret, int *secret_len, struct stack_st_SSL_CIPHER *peer_ciphers, SSL_CIPHER **cipher, void *arg); struct ssl_cipher_st { int valid; const char *name; unsigned long id; unsigned long algorithm_mkey; unsigned long algorithm_auth; unsigned long algorithm_enc; unsigned long algorithm_mac; unsigned long algorithm_ssl; unsigned long algo_strength; unsigned long algorithm2; int strength_bits; int alg_bits; }; struct ssl_method_st { int version; int (*ssl_new)(SSL *s); void (*ssl_clear)(SSL *s); void (*ssl_free)(SSL *s); int (*ssl_accept)(SSL *s); int (*ssl_connect)(SSL *s); int (*ssl_read)(SSL *s,void *buf,int len); int (*ssl_peek)(SSL *s,void *buf,int len); int (*ssl_write)(SSL *s,const void *buf,int len); int (*ssl_shutdown)(SSL *s); int (*ssl_renegotiate)(SSL *s); int (*ssl_renegotiate_check)(SSL *s); long (*ssl_get_message)(SSL *s, int st1, int stn, int mt, long max, int *ok); int (*ssl_read_bytes)(SSL *s, int type, unsigned char *buf, int len, int peek); int (*ssl_write_bytes)(SSL *s, int type, const void *buf_, int len); int (*ssl_dispatch_alert)(SSL *s); long (*ssl_ctrl)(SSL *s,int cmd,long larg,void *parg); long (*ssl_ctx_ctrl)(SSL_CTX *ctx,int cmd,long larg,void *parg); const SSL_CIPHER *(*get_cipher_by_char)(const unsigned char *ptr); int (*put_cipher_by_char)(const SSL_CIPHER *cipher,unsigned char *ptr); int (*ssl_pending)(const SSL *s); int (*num_ciphers)(void); const SSL_CIPHER *(*get_cipher)(unsigned ncipher); const struct ssl_method_st *(*get_ssl_method)(int version); long (*get_timeout)(void); struct ssl3_enc_method *ssl3_enc; int (*ssl_version)(void); long (*ssl_callback_ctrl)(SSL *s, int cb_id, void (*fp)(void)); long (*ssl_ctx_callback_ctrl)(SSL_CTX *s, int cb_id, void (*fp)(void)); }; struct ssl_session_st { int ssl_version; unsigned int key_arg_length; unsigned char key_arg[8]; int master_key_length; unsigned char master_key[48]; unsigned int session_id_length; unsigned char session_id[32]; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; char *psk_identity_hint; char *psk_identity; int not_resumable; struct sess_cert_st *sess_cert; X509 *peer; long verify_result; int references; long timeout; long time; unsigned int compress_meth; const SSL_CIPHER *cipher; unsigned long cipher_id; struct stack_st_SSL_CIPHER *ciphers; CRYPTO_EX_DATA ex_data; struct ssl_session_st *prev,*next; char *tlsext_hostname; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; unsigned char *tlsext_tick; size_t tlsext_ticklen; long tlsext_tick_lifetime_hint; char *srp_username; }; # 562 "/glade/apps/opt/usr/include/openssl/ssl.h" # 669 "/glade/apps/opt/usr/include/openssl/ssl.h" # 684 "/glade/apps/opt/usr/include/openssl/ssl.h" void SSL_CTX_set_msg_callback(SSL_CTX *ctx, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); void SSL_set_msg_callback(SSL *ssl, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)); typedef struct srp_ctx_st { void *SRP_cb_arg; int (*TLS_ext_srp_username_callback)(SSL *, int *, void *); int (*SRP_verify_param_callback)(SSL *, void *); char *(*SRP_give_srp_client_pwd_callback)(SSL *, void *); char *login; BIGNUM *N,*g,*s,*B,*A; BIGNUM *a,*b,*v; char *info; int strength; unsigned long srp_Mask; } SRP_CTX; int SSL_SRP_CTX_init(SSL *s); int SSL_CTX_SRP_CTX_init(SSL_CTX *ctx); int SSL_SRP_CTX_free(SSL *ctx); int SSL_CTX_SRP_CTX_free(SSL_CTX *ctx); int SSL_srp_server_param_with_username(SSL *s, int *ad); int SRP_generate_server_master_secret(SSL *s,unsigned char *master_key); int SRP_Calc_A_param(SSL *s); int SRP_generate_client_master_secret(SSL *s,unsigned char *master_key); typedef int (*GEN_SESSION_CB)(const SSL *ssl, unsigned char *id, unsigned int *id_len); typedef struct ssl_comp_st SSL_COMP; struct ssl_comp_st { int id; const char *name; COMP_METHOD *method; }; struct stack_st_SSL_COMP { _STACK stack; }; struct lhash_st_SSL_SESSION { int dummy; }; struct ssl_ctx_st { const SSL_METHOD *method; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; struct x509_store_st *cert_store; struct lhash_st_SSL_SESSION *sessions; unsigned long session_cache_size; struct ssl_session_st *session_cache_head; struct ssl_session_st *session_cache_tail; int session_cache_mode; long session_timeout; int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess); void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess); SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy); struct { int sess_connect; int sess_connect_renegotiate; int sess_connect_good; int sess_accept; int sess_accept_renegotiate; int sess_accept_good; int sess_miss; int sess_timeout; int sess_cache_full; int sess_hit; int sess_cb_hit; } stats; int references; int (*app_verify_callback)(X509_STORE_CTX *, void *); void *app_verify_arg; pem_password_cb *default_passwd_callback; void *default_passwd_callback_userdata; int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len); int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len); CRYPTO_EX_DATA ex_data; const EVP_MD *rsa_md5; const EVP_MD *md5; const EVP_MD *sha1; struct stack_st_X509 *extra_certs; struct stack_st_SSL_COMP *comp_methods; void (*info_callback)(const SSL *ssl,int type,int val); struct stack_st_X509_NAME *client_CA; unsigned long options; unsigned long mode; long max_cert_list; struct cert_st *cert; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int verify_mode; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int (*default_verify_callback)(int ok,X509_STORE_CTX *ctx); GEN_SESSION_CB generate_session_id; X509_VERIFY_PARAM *param; int quiet_shutdown; unsigned int max_send_fragment; ENGINE *client_cert_engine; int (*tlsext_servername_callback)(SSL*, int *, void *); void *tlsext_servername_arg; unsigned char tlsext_tick_key_name[16]; unsigned char tlsext_tick_hmac_key[16]; unsigned char tlsext_tick_aes_key[16]; int (*tlsext_ticket_key_cb)(SSL *ssl, unsigned char *name, unsigned char *iv, EVP_CIPHER_CTX *ectx, HMAC_CTX *hctx, int enc); int (*tlsext_status_cb)(SSL *ssl, void *arg); void *tlsext_status_arg; int (*tlsext_opaque_prf_input_callback)(SSL *, void *peerinput, size_t len, void *arg); void *tlsext_opaque_prf_input_callback_arg; char *psk_identity_hint; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); unsigned int freelist_max_len; struct ssl3_buf_freelist_st *wbuf_freelist; struct ssl3_buf_freelist_st *rbuf_freelist; SRP_CTX srp_ctx; int (*next_protos_advertised_cb)(SSL *s, const unsigned char **buf, unsigned int *len, void *arg); void *next_protos_advertised_cb_arg; int (*next_proto_select_cb)(SSL *s, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg); void *next_proto_select_cb_arg; struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; }; struct lhash_st_SSL_SESSION *SSL_CTX_sessions(SSL_CTX *ctx); # 1030 "/glade/apps/opt/usr/include/openssl/ssl.h" void SSL_CTX_sess_set_new_cb(SSL_CTX *ctx, int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess)); int (*SSL_CTX_sess_get_new_cb(SSL_CTX *ctx))(struct ssl_st *ssl, SSL_SESSION *sess); void SSL_CTX_sess_set_remove_cb(SSL_CTX *ctx, void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess)); void (*SSL_CTX_sess_get_remove_cb(SSL_CTX *ctx))(struct ssl_ctx_st *ctx, SSL_SESSION *sess); void SSL_CTX_sess_set_get_cb(SSL_CTX *ctx, SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy)); SSL_SESSION *(*SSL_CTX_sess_get_get_cb(SSL_CTX *ctx))(struct ssl_st *ssl, unsigned char *Data, int len, int *copy); void SSL_CTX_set_info_callback(SSL_CTX *ctx, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_CTX_get_info_callback(SSL_CTX *ctx))(const SSL *ssl,int type,int val); void SSL_CTX_set_client_cert_cb(SSL_CTX *ctx, int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey)); int (*SSL_CTX_get_client_cert_cb(SSL_CTX *ctx))(SSL *ssl, X509 **x509, EVP_PKEY **pkey); int SSL_CTX_set_client_cert_engine(SSL_CTX *ctx, ENGINE *e); void SSL_CTX_set_cookie_generate_cb(SSL_CTX *ctx, int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len)); void SSL_CTX_set_cookie_verify_cb(SSL_CTX *ctx, int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len)); void SSL_CTX_set_next_protos_advertised_cb(SSL_CTX *s, int (*cb) (SSL *ssl, const unsigned char **out, unsigned int *outlen, void *arg), void *arg); void SSL_CTX_set_next_proto_select_cb(SSL_CTX *s, int (*cb) (SSL *ssl, unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, void *arg), void *arg); int SSL_select_next_proto(unsigned char **out, unsigned char *outlen, const unsigned char *in, unsigned int inlen, const unsigned char *client, unsigned int client_len); void SSL_get0_next_proto_negotiated(const SSL *s, const unsigned char **data, unsigned *len); void SSL_CTX_set_psk_client_callback(SSL_CTX *ctx, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_client_callback(SSL *ssl, unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len)); void SSL_CTX_set_psk_server_callback(SSL_CTX *ctx, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); void SSL_set_psk_server_callback(SSL *ssl, unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len)); int SSL_CTX_use_psk_identity_hint(SSL_CTX *ctx, const char *identity_hint); int SSL_use_psk_identity_hint(SSL *s, const char *identity_hint); const char *SSL_get_psk_identity_hint(const SSL *s); const char *SSL_get_psk_identity(const SSL *s); struct ssl_st { int version; int type; const SSL_METHOD *method; BIO *rbio; BIO *wbio; BIO *bbio; int rwstate; int in_handshake; int (*handshake_func)(SSL *); int server; int new_session; int quiet_shutdown; int shutdown; int state; int rstate; BUF_MEM *init_buf; void *init_msg; int init_num; int init_off; unsigned char *packet; unsigned int packet_length; struct ssl2_state_st *s2; struct ssl3_state_st *s3; struct dtls1_state_st *d1; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg); void *msg_callback_arg; int hit; X509_VERIFY_PARAM *param; struct stack_st_SSL_CIPHER *cipher_list; struct stack_st_SSL_CIPHER *cipher_list_by_id; int mac_flags; EVP_CIPHER_CTX *enc_read_ctx; EVP_MD_CTX *read_hash; COMP_CTX *expand; EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; struct cert_st *cert; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; SSL_SESSION *session; GEN_SESSION_CB generate_session_id; int verify_mode; int (*verify_callback)(int ok,X509_STORE_CTX *ctx); void (*info_callback)(const SSL *ssl,int type,int val); int error; int error_code; unsigned int (*psk_client_callback)(SSL *ssl, const char *hint, char *identity, unsigned int max_identity_len, unsigned char *psk, unsigned int max_psk_len); unsigned int (*psk_server_callback)(SSL *ssl, const char *identity, unsigned char *psk, unsigned int max_psk_len); SSL_CTX *ctx; int debug; long verify_result; CRYPTO_EX_DATA ex_data; struct stack_st_X509_NAME *client_CA; int references; unsigned long options; unsigned long mode; long max_cert_list; int first_packet; int client_version; unsigned int max_send_fragment; void (*tlsext_debug_cb)(SSL *s, int client_server, int type, unsigned char *data, int len, void *arg); void *tlsext_debug_arg; char *tlsext_hostname; int servername_done; int tlsext_status_type; int tlsext_status_expected; struct stack_st_OCSP_RESPID *tlsext_ocsp_ids; X509_EXTENSIONS *tlsext_ocsp_exts; unsigned char *tlsext_ocsp_resp; int tlsext_ocsp_resplen; int tlsext_ticket_expected; size_t tlsext_ecpointformatlist_length; unsigned char *tlsext_ecpointformatlist; size_t tlsext_ellipticcurvelist_length; unsigned char *tlsext_ellipticcurvelist; void *tlsext_opaque_prf_input; size_t tlsext_opaque_prf_input_len; TLS_SESSION_TICKET_EXT *tlsext_session_ticket; tls_session_ticket_ext_cb_fn tls_session_ticket_ext_cb; void *tls_session_ticket_ext_cb_arg; tls_session_secret_cb_fn tls_session_secret_cb; void *tls_session_secret_cb_arg; SSL_CTX * initial_ctx; unsigned char *next_proto_negotiated; unsigned char next_proto_negotiated_len; struct stack_st_SRTP_PROTECTION_PROFILE *srtp_profiles; SRTP_PROTECTION_PROFILE *srtp_profile; unsigned int tlsext_heartbeat; unsigned int tlsext_hb_pending; unsigned int tlsext_hb_seq; int renegotiate; SRP_CTX srp_ctx; }; } # 1 "/glade/apps/opt/usr/include/openssl/ssl2.h" 1 extern "C" { # 83 "/glade/apps/opt/usr/include/openssl/ssl2.h" # 103 "/glade/apps/opt/usr/include/openssl/ssl2.h" # 119 "/glade/apps/opt/usr/include/openssl/ssl2.h" # 142 "/glade/apps/opt/usr/include/openssl/ssl2.h" # 153 "/glade/apps/opt/usr/include/openssl/ssl2.h" typedef struct ssl2_state_st { int three_byte_header; int clear_text; int escape; int ssl2_rollback; unsigned int wnum; int wpend_tot; const unsigned char *wpend_buf; int wpend_off; int wpend_len; int wpend_ret; int rbuf_left; int rbuf_offs; unsigned char *rbuf; unsigned char *wbuf; unsigned char *write_ptr; unsigned int padding; unsigned int rlength; int ract_data_length; unsigned int wlength; int wact_data_length; unsigned char *ract_data; unsigned char *wact_data; unsigned char *mac_data; unsigned char *read_key; unsigned char *write_key; unsigned int challenge_length; unsigned char challenge[32]; unsigned int conn_id_length; unsigned char conn_id[16]; unsigned int key_material_length; unsigned char key_material[24*2]; unsigned long read_sequence; unsigned long write_sequence; struct { unsigned int conn_id_length; unsigned int cert_type; unsigned int cert_length; unsigned int csl; unsigned int clear; unsigned int enc; unsigned char ccl[32]; unsigned int cipher_spec_length; unsigned int session_id_length; unsigned int clen; unsigned int rlen; } tmp; } SSL2_STATE; # 246 "/glade/apps/opt/usr/include/openssl/ssl2.h" # 267 "/glade/apps/opt/usr/include/openssl/ssl2.h" } # 1373 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/ssl3.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/ssl.h" 1 # 126 "/glade/apps/opt/usr/include/openssl/ssl3.h" 2 extern "C" { # 144 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 151 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 158 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 174 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 185 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 192 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 203 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 210 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 217 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 238 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 245 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 268 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 313 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 342 "/glade/apps/opt/usr/include/openssl/ssl3.h" typedef struct ssl3_record_st { int type; unsigned int length; unsigned int off; unsigned char *data; unsigned char *input; unsigned char *comp; unsigned long epoch; unsigned char seq_num[8]; } SSL3_RECORD; typedef struct ssl3_buffer_st { unsigned char *buf; size_t len; int offset; int left; } SSL3_BUFFER; # 378 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 391 "/glade/apps/opt/usr/include/openssl/ssl3.h" typedef struct ssl3_state_st { long flags; int delay_buf_pop_ret; unsigned char read_sequence[8]; int read_mac_secret_size; unsigned char read_mac_secret[64]; unsigned char write_sequence[8]; int write_mac_secret_size; unsigned char write_mac_secret[64]; unsigned char server_random[32]; unsigned char client_random[32]; int need_empty_fragments; int empty_fragment_done; int init_extra; SSL3_BUFFER rbuf; SSL3_BUFFER wbuf; SSL3_RECORD rrec; SSL3_RECORD wrec; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[4]; unsigned int handshake_fragment_len; unsigned int wnum; int wpend_tot; int wpend_type; int wpend_ret; const unsigned char *wpend_buf; BIO *handshake_buffer; EVP_MD_CTX **handshake_dgst; int change_cipher_spec; int warn_alert; int fatal_alert; int alert_dispatch; unsigned char send_alert[2]; int renegotiate; int total_renegotiations; int num_renegotiations; int in_read_app_data; void *client_opaque_prf_input; size_t client_opaque_prf_input_len; void *server_opaque_prf_input; size_t server_opaque_prf_input_len; struct { unsigned char cert_verify_md[64*2]; unsigned char finish_md[64*2]; int finish_md_len; unsigned char peer_finish_md[64*2]; int peer_finish_md_len; unsigned long message_size; int message_type; const SSL_CIPHER *new_cipher; DH *dh; EC_KEY *ecdh; int next_state; int reuse_message; int cert_req; int ctype_num; char ctype[9]; struct stack_st_X509_NAME *ca_names; int use_rsa_tmp; int key_block_length; unsigned char *key_block; const EVP_CIPHER *new_sym_enc; const EVP_MD *new_hash; int new_mac_pkey_type; int new_mac_secret_size; const SSL_COMP *new_compression; int cert_request; } tmp; unsigned char previous_client_finished[64]; unsigned char previous_client_finished_len; unsigned char previous_server_finished[64]; unsigned char previous_server_finished_len; int send_connection_binding; int next_proto_neg_seen; char is_probably_safari; } SSL3_STATE; # 579 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 596 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 605 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 634 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 649 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 658 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 675 "/glade/apps/opt/usr/include/openssl/ssl3.h" # 688 "/glade/apps/opt/usr/include/openssl/ssl3.h" } # 1374 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/tls1.h" 1 extern "C" { # 192 "/glade/apps/opt/usr/include/openssl/tls1.h" # 199 "/glade/apps/opt/usr/include/openssl/tls1.h" # 207 "/glade/apps/opt/usr/include/openssl/tls1.h" # 277 "/glade/apps/opt/usr/include/openssl/tls1.h" const char *SSL_get_servername(const SSL *s, const int type); int SSL_get_servername_type(const SSL *s); int SSL_export_keying_material(SSL *s, unsigned char *out, size_t olen, const char *label, size_t llen, const unsigned char *p, size_t plen, int use_context); # 353 "/glade/apps/opt/usr/include/openssl/tls1.h" # 368 "/glade/apps/opt/usr/include/openssl/tls1.h" # 387 "/glade/apps/opt/usr/include/openssl/tls1.h" # 396 "/glade/apps/opt/usr/include/openssl/tls1.h" # 403 "/glade/apps/opt/usr/include/openssl/tls1.h" # 411 "/glade/apps/opt/usr/include/openssl/tls1.h" # 419 "/glade/apps/opt/usr/include/openssl/tls1.h" # 428 "/glade/apps/opt/usr/include/openssl/tls1.h" # 436 "/glade/apps/opt/usr/include/openssl/tls1.h" # 444 "/glade/apps/opt/usr/include/openssl/tls1.h" # 458 "/glade/apps/opt/usr/include/openssl/tls1.h" # 500 "/glade/apps/opt/usr/include/openssl/tls1.h" # 511 "/glade/apps/opt/usr/include/openssl/tls1.h" # 521 "/glade/apps/opt/usr/include/openssl/tls1.h" # 536 "/glade/apps/opt/usr/include/openssl/tls1.h" # 544 "/glade/apps/opt/usr/include/openssl/tls1.h" # 551 "/glade/apps/opt/usr/include/openssl/tls1.h" # 599 "/glade/apps/opt/usr/include/openssl/tls1.h" # 607 "/glade/apps/opt/usr/include/openssl/tls1.h" # 614 "/glade/apps/opt/usr/include/openssl/tls1.h" # 622 "/glade/apps/opt/usr/include/openssl/tls1.h" # 637 "/glade/apps/opt/usr/include/openssl/tls1.h" # 651 "/glade/apps/opt/usr/include/openssl/tls1.h" # 662 "/glade/apps/opt/usr/include/openssl/tls1.h" # 672 "/glade/apps/opt/usr/include/openssl/tls1.h" # 682 "/glade/apps/opt/usr/include/openssl/tls1.h" # 705 "/glade/apps/opt/usr/include/openssl/tls1.h" # 724 "/glade/apps/opt/usr/include/openssl/tls1.h" struct tls_session_ticket_ext_st { unsigned short length; void *data; }; } # 1375 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/dtls1.h" 1 # 1 "/glade/apps/opt/usr/include/openssl/pqueue.h" 1 # 1 "/usr/include/string.h" 1 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/string.h" 2 3 extern void *memcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memmove (void *__dest, __const void *__src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memccpy (void *__restrict __dest, __const void *__restrict __src, int __c, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *memset (void *__s, int __c, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern int memcmp (__const void *__s1, __const void *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern void *memchr (void *__s, int __c, size_t __n) throw () __asm ("memchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __const void *memchr (__const void *__s, int __c, size_t __n) throw () __asm ("memchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) void * memchr (void *__s, int __c, size_t __n) throw () { return __builtin_memchr (__s, __c, __n); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const void * memchr (__const void *__s, int __c, size_t __n) throw () { return __builtin_memchr (__s, __c, __n); } } extern "C++" void *rawmemchr (void *__s, int __c) throw () __asm ("rawmemchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" __const void *rawmemchr (__const void *__s, int __c) throw () __asm ("rawmemchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" void *memrchr (void *__s, int __c, size_t __n) throw () __asm ("memrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" __const void *memrchr (__const void *__s, int __c, size_t __n) throw () __asm ("memrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strcpy (char *__restrict __dest, __const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strcat (char *__restrict __dest, __const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strncat (char *__restrict __dest, __const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern int strcmp (__const char *__s1, __const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncmp (__const char *__s1, __const char *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcoll (__const char *__s1, __const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strxfrm (char *__restrict __dest, __const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (2))); extern int strcoll_l (__const char *__s1, __const char *__s2, __locale_t __l) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern size_t strxfrm_l (char *__dest, __const char *__src, size_t __n, __locale_t __l) throw () __attribute__ ((__nonnull__ (2, 4))); extern char *strdup (__const char *__s) throw () __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); extern char *strndup (__const char *__string, size_t __n) throw () __attribute__ ((__malloc__)) __attribute__ ((__nonnull__ (1))); # 197 "/usr/include/string.h" 3 # 209 "/usr/include/string.h" 3 extern "C++" { extern char *strchr (char *__s, int __c) throw () __asm ("strchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __const char *strchr (__const char *__s, int __c) throw () __asm ("strchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * strchr (char *__s, int __c) throw () { return __builtin_strchr (__s, __c); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * strchr (__const char *__s, int __c) throw () { return __builtin_strchr (__s, __c); } } extern "C++" { extern char *strrchr (char *__s, int __c) throw () __asm ("strrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __const char *strrchr (__const char *__s, int __c) throw () __asm ("strrchr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * strrchr (char *__s, int __c) throw () { return __builtin_strrchr (__s, __c); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * strrchr (__const char *__s, int __c) throw () { return __builtin_strrchr (__s, __c); } } extern "C++" char *strchrnul (char *__s, int __c) throw () __asm ("strchrnul") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern "C++" __const char *strchrnul (__const char *__s, int __c) throw () __asm ("strchrnul") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strcspn (__const char *__s, __const char *__reject) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern size_t strspn (__const char *__s, __const char *__accept) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern char *strpbrk (char *__s, __const char *__accept) throw () __asm ("strpbrk") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern __const char *strpbrk (__const char *__s, __const char *__accept) throw () __asm ("strpbrk") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * strpbrk (char *__s, __const char *__accept) throw () { return __builtin_strpbrk (__s, __accept); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * strpbrk (__const char *__s, __const char *__accept) throw () { return __builtin_strpbrk (__s, __accept); } } extern "C++" { extern char *strstr (char *__haystack, __const char *__needle) throw () __asm ("strstr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern __const char *strstr (__const char *__haystack, __const char *__needle) throw () __asm ("strstr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * strstr (char *__haystack, __const char *__needle) throw () { return __builtin_strstr (__haystack, __needle); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * strstr (__const char *__haystack, __const char *__needle) throw () { return __builtin_strstr (__haystack, __needle); } } extern char *strtok (char *__restrict __s, __const char *__restrict __delim) throw () __attribute__ ((__nonnull__ (2))); extern char *__strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) throw () __attribute__ ((__nonnull__ (2, 3))); extern char *strtok_r (char *__restrict __s, __const char *__restrict __delim, char **__restrict __save_ptr) throw () __attribute__ ((__nonnull__ (2, 3))); extern "C++" char *strcasestr (char *__haystack, __const char *__needle) throw () __asm ("strcasestr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" __const char *strcasestr (__const char *__haystack, __const char *__needle) throw () __asm ("strcasestr") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern void *memmem (__const void *__haystack, size_t __haystacklen, __const void *__needle, size_t __needlelen) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 3))); extern void *__mempcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *mempcpy (void *__restrict __dest, __const void *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern size_t strlen (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern size_t strnlen (__const char *__string, size_t __maxlen) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern char *strerror (int __errnum) throw (); # 436 "/usr/include/string.h" 3 extern char *strerror_r (int __errnum, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern char *strerror_l (int __errnum, __locale_t __l) throw (); extern void __bzero (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern void bcopy (__const void *__src, void *__dest, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern void bzero (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern int bcmp (__const void *__s1, __const void *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern "C++" { extern char *index (char *__s, int __c) throw () __asm ("index") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __const char *index (__const char *__s, int __c) throw () __asm ("index") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * index (char *__s, int __c) throw () { return __builtin_index (__s, __c); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * index (__const char *__s, int __c) throw () { return __builtin_index (__s, __c); } } extern "C++" { extern char *rindex (char *__s, int __c) throw () __asm ("rindex") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __const char *rindex (__const char *__s, int __c) throw () __asm ("rindex") __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))); extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) char * rindex (char *__s, int __c) throw () { return __builtin_rindex (__s, __c); } extern __inline __attribute__ ((__always_inline__)) __attribute__ ((__gnu_inline__, __artificial__)) __const char * rindex (__const char *__s, int __c) throw () { return __builtin_rindex (__s, __c); } } extern int ffs (int __i) throw () __attribute__ ((__const__)); extern int ffsl (long int __l) throw () __attribute__ ((__const__)); __extension__ extern int ffsll (long long int __ll) throw () __attribute__ ((__const__)); extern int strcasecmp (__const char *__s1, __const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strncasecmp (__const char *__s1, __const char *__s2, size_t __n) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern int strcasecmp_l (__const char *__s1, __const char *__s2, __locale_t __loc) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 3))); extern int strncasecmp_l (__const char *__s1, __const char *__s2, size_t __n, __locale_t __loc) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2, 4))); extern char *strsep (char **__restrict __stringp, __const char *__restrict __delim) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *strsignal (int __sig) throw (); extern char *__stpcpy (char *__restrict __dest, __const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *stpcpy (char *__restrict __dest, __const char *__restrict __src) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *__stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern char *stpncpy (char *__restrict __dest, __const char *__restrict __src, size_t __n) throw () __attribute__ ((__nonnull__ (1, 2))); extern int strverscmp (__const char *__s1, __const char *__s2) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1, 2))); extern char *strfry (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern void *memfrob (void *__s, size_t __n) throw () __attribute__ ((__nonnull__ (1))); extern "C++" char *basename (char *__filename) throw () __asm ("basename") __attribute__ ((__nonnull__ (1))); extern "C++" __const char *basename (__const char *__filename) throw () __asm ("basename") __attribute__ ((__nonnull__ (1))); # 639 "/usr/include/string.h" 3 } # 66 "/glade/apps/opt/usr/include/openssl/pqueue.h" 2 typedef struct _pqueue *pqueue; typedef struct _pitem { unsigned char priority[8]; void *data; struct _pitem *next; } pitem; typedef struct _pitem *piterator; pitem *pitem_new(unsigned char *prio64be, void *data); void pitem_free(pitem *item); pqueue pqueue_new(void); void pqueue_free(pqueue pq); pitem *pqueue_insert(pqueue pq, pitem *item); pitem *pqueue_peek(pqueue pq); pitem *pqueue_pop(pqueue pq); pitem *pqueue_find(pqueue pq, unsigned char *prio64be); pitem *pqueue_iterator(pqueue pq); pitem *pqueue_next(piterator *iter); void pqueue_print(pqueue pq); int pqueue_size(pqueue pq); # 65 "/glade/apps/opt/usr/include/openssl/dtls1.h" 2 # 1 "/usr/include/sys/time.h" 1 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 # 30 "/usr/include/sys/time.h" 2 3 extern "C" { # 52 "/usr/include/sys/time.h" 3 struct timezone { int tz_minuteswest; int tz_dsttime; }; typedef struct timezone *__restrict __timezone_ptr_t; extern int gettimeofday (struct timeval *__restrict __tv, __timezone_ptr_t __tz) throw () __attribute__ ((__nonnull__ (1))); extern int settimeofday (__const struct timeval *__tv, __const struct timezone *__tz) throw () __attribute__ ((__nonnull__ (1))); extern int adjtime (__const struct timeval *__delta, struct timeval *__olddelta) throw (); enum __itimer_which { ITIMER_REAL = 0, ITIMER_VIRTUAL = 1, ITIMER_PROF = 2 }; struct itimerval { struct timeval it_interval; struct timeval it_value; }; typedef int __itimer_which_t; extern int getitimer (__itimer_which_t __which, struct itimerval *__value) throw (); extern int setitimer (__itimer_which_t __which, __const struct itimerval *__restrict __new, struct itimerval *__restrict __old) throw (); extern int utimes (__const char *__file, __const struct timeval __tvp[2]) throw () __attribute__ ((__nonnull__ (1))); extern int lutimes (__const char *__file, __const struct timeval __tvp[2]) throw () __attribute__ ((__nonnull__ (1))); extern int futimes (int __fd, __const struct timeval __tvp[2]) throw (); extern int futimesat (int __fd, __const char *__file, __const struct timeval __tvp[2]) throw (); # 190 "/usr/include/sys/time.h" 3 } # 79 "/glade/apps/opt/usr/include/openssl/dtls1.h" 2 extern "C" { typedef struct dtls1_bitmap_st { unsigned long map; unsigned char max_seq_num[8]; } DTLS1_BITMAP; struct dtls1_retransmit_state { EVP_CIPHER_CTX *enc_write_ctx; EVP_MD_CTX *write_hash; COMP_CTX *compress; SSL_SESSION *session; unsigned short epoch; }; struct hm_header_st { unsigned char type; unsigned long msg_len; unsigned short seq; unsigned long frag_off; unsigned long frag_len; unsigned int is_ccs; struct dtls1_retransmit_state saved_retransmit_state; }; struct ccs_header_st { unsigned char type; unsigned short seq; }; struct dtls1_timeout_st { unsigned int read_timeouts; unsigned int write_timeouts; unsigned int num_alerts; }; typedef struct record_pqueue_st { unsigned short epoch; pqueue q; } record_pqueue; typedef struct hm_fragment_st { struct hm_header_st msg_header; unsigned char *fragment; unsigned char *reassembly; } hm_fragment; typedef struct dtls1_state_st { unsigned int send_cookie; unsigned char cookie[256]; unsigned char rcvd_cookie[256]; unsigned int cookie_len; unsigned short r_epoch; unsigned short w_epoch; DTLS1_BITMAP bitmap; DTLS1_BITMAP next_bitmap; unsigned short handshake_write_seq; unsigned short next_handshake_write_seq; unsigned short handshake_read_seq; unsigned char last_write_sequence[8]; record_pqueue unprocessed_rcds; record_pqueue processed_rcds; pqueue buffered_messages; pqueue sent_messages; record_pqueue buffered_app_data; unsigned int listen; unsigned int mtu; struct hm_header_st w_msg_hdr; struct hm_header_st r_msg_hdr; struct dtls1_timeout_st timeout; struct timeval next_timeout; unsigned short timeout_duration; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[12]; unsigned int handshake_fragment_len; unsigned int retransmitting; unsigned int change_cipher_spec_ok; # 261 "/glade/apps/opt/usr/include/openssl/dtls1.h" } DTLS1_STATE; typedef struct dtls1_record_data_st { unsigned char *packet; unsigned int packet_length; SSL3_BUFFER rbuf; SSL3_RECORD rrec; } DTLS1_RECORD_DATA; } # 1376 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/ssl23.h" 1 extern "C" { } # 1377 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 # 1 "/glade/apps/opt/usr/include/openssl/srtp.h" 1 extern "C" { # 132 "/glade/apps/opt/usr/include/openssl/srtp.h" int SSL_CTX_set_tlsext_use_srtp(SSL_CTX *ctx, const char *profiles); int SSL_set_tlsext_use_srtp(SSL *ctx, const char *profiles); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); struct stack_st_SRTP_PROTECTION_PROFILE *SSL_get_srtp_profiles(SSL *ssl); SRTP_PROTECTION_PROFILE *SSL_get_selected_srtp_profile(SSL *s); } # 1378 "/glade/apps/opt/usr/include/openssl/ssl.h" 2 extern "C" { # 1390 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1405 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1419 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1427 "/glade/apps/opt/usr/include/openssl/ssl.h" size_t SSL_get_finished(const SSL *s, void *buf, size_t count); size_t SSL_get_peer_finished(const SSL *s, void *buf, size_t count); # 1459 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1472 "/glade/apps/opt/usr/include/openssl/ssl.h" SSL_SESSION *PEM_read_bio_SSL_SESSION(BIO *bp, SSL_SESSION * *x, pem_password_cb *cb, void *u); SSL_SESSION *PEM_read_SSL_SESSION(FILE *fp, SSL_SESSION * *x, pem_password_cb *cb, void *u); int PEM_write_bio_SSL_SESSION(BIO *bp, SSL_SESSION *x); int PEM_write_SSL_SESSION(FILE *fp, SSL_SESSION *x); # 1511 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1521 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1529 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1537 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1558 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1565 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1592 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1609 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1627 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1636 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1645 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1654 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1661 "/glade/apps/opt/usr/include/openssl/ssl.h" BIO_METHOD *BIO_f_ssl(void); BIO *BIO_new_ssl(SSL_CTX *ctx,int client); BIO *BIO_new_ssl_connect(SSL_CTX *ctx); BIO *BIO_new_buffer_ssl_connect(SSL_CTX *ctx); int BIO_ssl_copy_session_id(BIO *to,BIO *from); void BIO_ssl_shutdown(BIO *ssl_bio); int SSL_CTX_set_cipher_list(SSL_CTX *,const char *str); SSL_CTX *SSL_CTX_new(const SSL_METHOD *meth); void SSL_CTX_free(SSL_CTX *); long SSL_CTX_set_timeout(SSL_CTX *ctx,long t); long SSL_CTX_get_timeout(const SSL_CTX *ctx); X509_STORE *SSL_CTX_get_cert_store(const SSL_CTX *); void SSL_CTX_set_cert_store(SSL_CTX *,X509_STORE *); int SSL_want(const SSL *s); int SSL_clear(SSL *s); void SSL_CTX_flush_sessions(SSL_CTX *ctx,long tm); const SSL_CIPHER *SSL_get_current_cipher(const SSL *s); int SSL_CIPHER_get_bits(const SSL_CIPHER *c,int *alg_bits); char * SSL_CIPHER_get_version(const SSL_CIPHER *c); const char * SSL_CIPHER_get_name(const SSL_CIPHER *c); unsigned long SSL_CIPHER_get_id(const SSL_CIPHER *c); int SSL_get_fd(const SSL *s); int SSL_get_rfd(const SSL *s); int SSL_get_wfd(const SSL *s); const char * SSL_get_cipher_list(const SSL *s,int n); char * SSL_get_shared_ciphers(const SSL *s, char *buf, int len); int SSL_get_read_ahead(const SSL * s); int SSL_pending(const SSL *s); int SSL_set_fd(SSL *s, int fd); int SSL_set_rfd(SSL *s, int fd); int SSL_set_wfd(SSL *s, int fd); void SSL_set_bio(SSL *s, BIO *rbio,BIO *wbio); BIO * SSL_get_rbio(const SSL *s); BIO * SSL_get_wbio(const SSL *s); int SSL_set_cipher_list(SSL *s, const char *str); void SSL_set_read_ahead(SSL *s, int yes); int SSL_get_verify_mode(const SSL *s); int SSL_get_verify_depth(const SSL *s); int (*SSL_get_verify_callback(const SSL *s))(int,X509_STORE_CTX *); void SSL_set_verify(SSL *s, int mode, int (*callback)(int ok,X509_STORE_CTX *ctx)); void SSL_set_verify_depth(SSL *s, int depth); int SSL_use_RSAPrivateKey(SSL *ssl, RSA *rsa); int SSL_use_RSAPrivateKey_ASN1(SSL *ssl, unsigned char *d, long len); int SSL_use_PrivateKey(SSL *ssl, EVP_PKEY *pkey); int SSL_use_PrivateKey_ASN1(int pk,SSL *ssl, const unsigned char *d, long len); int SSL_use_certificate(SSL *ssl, X509 *x); int SSL_use_certificate_ASN1(SSL *ssl, const unsigned char *d, int len); int SSL_use_RSAPrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_PrivateKey_file(SSL *ssl, const char *file, int type); int SSL_use_certificate_file(SSL *ssl, const char *file, int type); int SSL_CTX_use_RSAPrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_PrivateKey_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_file(SSL_CTX *ctx, const char *file, int type); int SSL_CTX_use_certificate_chain_file(SSL_CTX *ctx, const char *file); struct stack_st_X509_NAME *SSL_load_client_CA_file(const char *file); int SSL_add_file_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *file); int SSL_add_dir_cert_subjects_to_stack(struct stack_st_X509_NAME *stackCAs, const char *dir); void SSL_load_error_strings(void ); const char *SSL_state_string(const SSL *s); const char *SSL_rstate_string(const SSL *s); const char *SSL_state_string_long(const SSL *s); const char *SSL_rstate_string_long(const SSL *s); long SSL_SESSION_get_time(const SSL_SESSION *s); long SSL_SESSION_set_time(SSL_SESSION *s, long t); long SSL_SESSION_get_timeout(const SSL_SESSION *s); long SSL_SESSION_set_timeout(SSL_SESSION *s, long t); void SSL_copy_session_id(SSL *to,const SSL *from); X509 *SSL_SESSION_get0_peer(SSL_SESSION *s); int SSL_SESSION_set1_id_context(SSL_SESSION *s,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL_SESSION *SSL_SESSION_new(void); const unsigned char *SSL_SESSION_get_id(const SSL_SESSION *s, unsigned int *len); unsigned int SSL_SESSION_get_compress_id(const SSL_SESSION *s); int SSL_SESSION_print_fp(FILE *fp,const SSL_SESSION *ses); int SSL_SESSION_print(BIO *fp,const SSL_SESSION *ses); void SSL_SESSION_free(SSL_SESSION *ses); int i2d_SSL_SESSION(SSL_SESSION *in,unsigned char **pp); int SSL_set_session(SSL *to, SSL_SESSION *session); int SSL_CTX_add_session(SSL_CTX *s, SSL_SESSION *c); int SSL_CTX_remove_session(SSL_CTX *,SSL_SESSION *c); int SSL_CTX_set_generate_session_id(SSL_CTX *, GEN_SESSION_CB); int SSL_set_generate_session_id(SSL *, GEN_SESSION_CB); int SSL_has_matching_session_id(const SSL *ssl, const unsigned char *id, unsigned int id_len); SSL_SESSION *d2i_SSL_SESSION(SSL_SESSION **a,const unsigned char **pp, long length); X509 * SSL_get_peer_certificate(const SSL *s); struct stack_st_X509 *SSL_get_peer_cert_chain(const SSL *s); int SSL_CTX_get_verify_mode(const SSL_CTX *ctx); int SSL_CTX_get_verify_depth(const SSL_CTX *ctx); int (*SSL_CTX_get_verify_callback(const SSL_CTX *ctx))(int,X509_STORE_CTX *); void SSL_CTX_set_verify(SSL_CTX *ctx,int mode, int (*callback)(int, X509_STORE_CTX *)); void SSL_CTX_set_verify_depth(SSL_CTX *ctx,int depth); void SSL_CTX_set_cert_verify_callback(SSL_CTX *ctx, int (*cb)(X509_STORE_CTX *,void *), void *arg); int SSL_CTX_use_RSAPrivateKey(SSL_CTX *ctx, RSA *rsa); int SSL_CTX_use_RSAPrivateKey_ASN1(SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_PrivateKey(SSL_CTX *ctx, EVP_PKEY *pkey); int SSL_CTX_use_PrivateKey_ASN1(int pk,SSL_CTX *ctx, const unsigned char *d, long len); int SSL_CTX_use_certificate(SSL_CTX *ctx, X509 *x); int SSL_CTX_use_certificate_ASN1(SSL_CTX *ctx, int len, const unsigned char *d); void SSL_CTX_set_default_passwd_cb(SSL_CTX *ctx, pem_password_cb *cb); void SSL_CTX_set_default_passwd_cb_userdata(SSL_CTX *ctx, void *u); int SSL_CTX_check_private_key(const SSL_CTX *ctx); int SSL_check_private_key(const SSL *ctx); int SSL_CTX_set_session_id_context(SSL_CTX *ctx,const unsigned char *sid_ctx, unsigned int sid_ctx_len); SSL * SSL_new(SSL_CTX *ctx); int SSL_set_session_id_context(SSL *ssl,const unsigned char *sid_ctx, unsigned int sid_ctx_len); int SSL_CTX_set_purpose(SSL_CTX *s, int purpose); int SSL_set_purpose(SSL *s, int purpose); int SSL_CTX_set_trust(SSL_CTX *s, int trust); int SSL_set_trust(SSL *s, int trust); int SSL_CTX_set1_param(SSL_CTX *ctx, X509_VERIFY_PARAM *vpm); int SSL_set1_param(SSL *ssl, X509_VERIFY_PARAM *vpm); int SSL_CTX_set_srp_username(SSL_CTX *ctx,char *name); int SSL_CTX_set_srp_password(SSL_CTX *ctx,char *password); int SSL_CTX_set_srp_strength(SSL_CTX *ctx, int strength); int SSL_CTX_set_srp_client_pwd_callback(SSL_CTX *ctx, char *(*cb)(SSL *,void *)); int SSL_CTX_set_srp_verify_param_callback(SSL_CTX *ctx, int (*cb)(SSL *,void *)); int SSL_CTX_set_srp_username_callback(SSL_CTX *ctx, int (*cb)(SSL *,int *,void *)); int SSL_CTX_set_srp_cb_arg(SSL_CTX *ctx, void *arg); int SSL_set_srp_server_param(SSL *s, const BIGNUM *N, const BIGNUM *g, BIGNUM *sa, BIGNUM *v, char *info); int SSL_set_srp_server_param_pw(SSL *s, const char *user, const char *pass, const char *grp); BIGNUM *SSL_get_srp_g(SSL *s); BIGNUM *SSL_get_srp_N(SSL *s); char *SSL_get_srp_username(SSL *s); char *SSL_get_srp_userinfo(SSL *s); void SSL_free(SSL *ssl); int SSL_accept(SSL *ssl); int SSL_connect(SSL *ssl); int SSL_read(SSL *ssl,void *buf,int num); int SSL_peek(SSL *ssl,void *buf,int num); int SSL_write(SSL *ssl,const void *buf,int num); long SSL_ctrl(SSL *ssl,int cmd, long larg, void *parg); long SSL_callback_ctrl(SSL *, int, void (*)(void)); long SSL_CTX_ctrl(SSL_CTX *ctx,int cmd, long larg, void *parg); long SSL_CTX_callback_ctrl(SSL_CTX *, int, void (*)(void)); int SSL_get_error(const SSL *s,int ret_code); const char *SSL_get_version(const SSL *s); int SSL_CTX_set_ssl_version(SSL_CTX *ctx, const SSL_METHOD *meth); const SSL_METHOD *SSLv2_method(void); const SSL_METHOD *SSLv2_server_method(void); const SSL_METHOD *SSLv2_client_method(void); const SSL_METHOD *SSLv3_method(void); const SSL_METHOD *SSLv3_server_method(void); const SSL_METHOD *SSLv3_client_method(void); const SSL_METHOD *SSLv23_method(void); const SSL_METHOD *SSLv23_server_method(void); const SSL_METHOD *SSLv23_client_method(void); const SSL_METHOD *TLSv1_method(void); const SSL_METHOD *TLSv1_server_method(void); const SSL_METHOD *TLSv1_client_method(void); const SSL_METHOD *TLSv1_1_method(void); const SSL_METHOD *TLSv1_1_server_method(void); const SSL_METHOD *TLSv1_1_client_method(void); const SSL_METHOD *TLSv1_2_method(void); const SSL_METHOD *TLSv1_2_server_method(void); const SSL_METHOD *TLSv1_2_client_method(void); const SSL_METHOD *DTLSv1_method(void); const SSL_METHOD *DTLSv1_server_method(void); const SSL_METHOD *DTLSv1_client_method(void); struct stack_st_SSL_CIPHER *SSL_get_ciphers(const SSL *s); int SSL_do_handshake(SSL *s); int SSL_renegotiate(SSL *s); int SSL_renegotiate_abbreviated(SSL *s); int SSL_renegotiate_pending(SSL *s); int SSL_shutdown(SSL *s); const SSL_METHOD *SSL_get_ssl_method(SSL *s); int SSL_set_ssl_method(SSL *s, const SSL_METHOD *method); const char *SSL_alert_type_string_long(int value); const char *SSL_alert_type_string(int value); const char *SSL_alert_desc_string_long(int value); const char *SSL_alert_desc_string(int value); void SSL_set_client_CA_list(SSL *s, struct stack_st_X509_NAME *name_list); void SSL_CTX_set_client_CA_list(SSL_CTX *ctx, struct stack_st_X509_NAME *name_list); struct stack_st_X509_NAME *SSL_get_client_CA_list(const SSL *s); struct stack_st_X509_NAME *SSL_CTX_get_client_CA_list(const SSL_CTX *s); int SSL_add_client_CA(SSL *ssl,X509 *x); int SSL_CTX_add_client_CA(SSL_CTX *ctx,X509 *x); void SSL_set_connect_state(SSL *s); void SSL_set_accept_state(SSL *s); long SSL_get_default_timeout(const SSL *s); int SSL_library_init(void ); char *SSL_CIPHER_description(const SSL_CIPHER *,char *buf,int size); struct stack_st_X509_NAME *SSL_dup_CA_list(struct stack_st_X509_NAME *sk); SSL *SSL_dup(SSL *ssl); X509 *SSL_get_certificate(const SSL *ssl); struct evp_pkey_st *SSL_get_privatekey(SSL *ssl); void SSL_CTX_set_quiet_shutdown(SSL_CTX *ctx,int mode); int SSL_CTX_get_quiet_shutdown(const SSL_CTX *ctx); void SSL_set_quiet_shutdown(SSL *ssl,int mode); int SSL_get_quiet_shutdown(const SSL *ssl); void SSL_set_shutdown(SSL *ssl,int mode); int SSL_get_shutdown(const SSL *ssl); int SSL_version(const SSL *ssl); int SSL_CTX_set_default_verify_paths(SSL_CTX *ctx); int SSL_CTX_load_verify_locations(SSL_CTX *ctx, const char *CAfile, const char *CApath); SSL_SESSION *SSL_get_session(const SSL *ssl); SSL_SESSION *SSL_get1_session(SSL *ssl); SSL_CTX *SSL_get_SSL_CTX(const SSL *ssl); SSL_CTX *SSL_set_SSL_CTX(SSL *ssl, SSL_CTX* ctx); void SSL_set_info_callback(SSL *ssl, void (*cb)(const SSL *ssl,int type,int val)); void (*SSL_get_info_callback(const SSL *ssl))(const SSL *ssl,int type,int val); int SSL_state(const SSL *ssl); void SSL_set_state(SSL *ssl, int state); void SSL_set_verify_result(SSL *ssl,long v); long SSL_get_verify_result(const SSL *ssl); int SSL_set_ex_data(SSL *ssl,int idx,void *data); void *SSL_get_ex_data(const SSL *ssl,int idx); int SSL_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_SESSION_set_ex_data(SSL_SESSION *ss,int idx,void *data); void *SSL_SESSION_get_ex_data(const SSL_SESSION *ss,int idx); int SSL_SESSION_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_CTX_set_ex_data(SSL_CTX *ssl,int idx,void *data); void *SSL_CTX_get_ex_data(const SSL_CTX *ssl,int idx); int SSL_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func); int SSL_get_ex_data_X509_STORE_CTX_idx(void ); # 1982 "/glade/apps/opt/usr/include/openssl/ssl.h" # 1997 "/glade/apps/opt/usr/include/openssl/ssl.h" void SSL_CTX_set_tmp_rsa_callback(SSL_CTX *ctx, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_rsa_callback(SSL *ssl, RSA *(*cb)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_dh_callback(SSL_CTX *ctx, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_dh_callback(SSL *ssl, DH *(*dh)(SSL *ssl,int is_export, int keylength)); void SSL_CTX_set_tmp_ecdh_callback(SSL_CTX *ctx, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); void SSL_set_tmp_ecdh_callback(SSL *ssl, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)); const COMP_METHOD *SSL_get_current_compression(SSL *s); const COMP_METHOD *SSL_get_current_expansion(SSL *s); const char *SSL_COMP_get_name(const COMP_METHOD *comp); struct stack_st_SSL_COMP *SSL_COMP_get_compression_methods(void); int SSL_COMP_add_compression_method(int id,COMP_METHOD *cm); # 2043 "/glade/apps/opt/usr/include/openssl/ssl.h" int SSL_set_session_ticket_ext(SSL *s, void *ext_data, int ext_len); int SSL_set_session_ticket_ext_cb(SSL *s, tls_session_ticket_ext_cb_fn cb, void *arg); int SSL_set_session_secret_cb(SSL *s, tls_session_secret_cb_fn tls_session_secret_cb, void *arg); void SSL_set_debug(SSL *s, int debug); int SSL_cache_hit(SSL *s); void ERR_load_SSL_strings(void); # 2283 "/glade/apps/opt/usr/include/openssl/ssl.h" # 2584 "/glade/apps/opt/usr/include/openssl/ssl.h" } # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['openssl/ssl.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.ssl(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.ssl(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/pdflatex...not found Checking for program /glade/u/home/fandek/bin/pdflatex...not found Checking for program ./pdflatex...not found Checking for program /usr/lib64/qt-3.3/bin/pdflatex...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/pdflatex...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/pdflatex...not found Checking for program /glade/apps/opt/usr/bin/pdflatex...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/pdflatex...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/bin/pdflatex" Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/bfort...not found Checking for program /glade/u/home/fandek/bin/bfort...not found Checking for program ./bfort...not found Checking for program /usr/lib64/qt-3.3/bin/bfort...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/bfort...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/bfort...not found Checking for program /glade/apps/opt/usr/bin/bfort...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/bfort...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /usr/local/openssh/5.7p1krb/bin/bfort...not found Checking for program /usr/lpp/mmfs/bin/bfort...not found Checking for program /opt/ibutils/bin/bfort...not found Checking for program /ncar/opt/hpss/bfort...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/bfort...not found Checking for program /glade/u/home/fandek/bfort...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/bfort...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/doctext...not found Checking for program /glade/u/home/fandek/bin/doctext...not found Checking for program ./doctext...not found Checking for program /usr/lib64/qt-3.3/bin/doctext...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/doctext...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/doctext...not found Checking for program /glade/apps/opt/usr/bin/doctext...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/doctext...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /usr/local/openssh/5.7p1krb/bin/doctext...not found Checking for program /usr/lpp/mmfs/bin/doctext...not found Checking for program /opt/ibutils/bin/doctext...not found Checking for program /ncar/opt/hpss/doctext...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/doctext...not found Checking for program /glade/u/home/fandek/doctext...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/doctext...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/mapnames...not found Checking for program /glade/u/home/fandek/bin/mapnames...not found Checking for program ./mapnames...not found Checking for program /usr/lib64/qt-3.3/bin/mapnames...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/mapnames...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/mapnames...not found Checking for program /glade/apps/opt/usr/bin/mapnames...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/mapnames...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /usr/local/openssh/5.7p1krb/bin/mapnames...not found Checking for program /usr/lpp/mmfs/bin/mapnames...not found Checking for program /opt/ibutils/bin/mapnames...not found Checking for program /ncar/opt/hpss/mapnames...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/mapnames...not found Checking for program /glade/u/home/fandek/mapnames...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/mapnames...not found Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/bib2html...not found Checking for program /glade/u/home/fandek/bin/bib2html...not found Checking for program ./bib2html...not found Checking for program /usr/lib64/qt-3.3/bin/bib2html...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/bib2html...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/bib2html...not found Checking for program /glade/apps/opt/usr/bin/bib2html...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/bib2html...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /usr/local/openssh/5.7p1krb/bin/bib2html...not found Checking for program /usr/lpp/mmfs/bin/bib2html...not found Checking for program /opt/ibutils/bin/bib2html...not found Checking for program /ncar/opt/hpss/bib2html...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/bib2html...not found Checking for program /glade/u/home/fandek/bib2html...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.sowing(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Could not locate an existing copy of sowing: [] Downloading sowing =============================================================================== Trying to download https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== Executing: ['git', 'clone', 'https://bitbucket.org/petsc/pkg-sowing.git', '/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing'] stdout: Initialized empty Git repository in /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/.git/ Executing: ['git', 'checkout', '-f', '1974716'] Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Have to rebuild sowing, /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/sowing.petscconf != /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/sowing =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing && ./configure --prefix=/glade/p/work/fandek/petsc/arch-linux2-cxx-debug stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /glade/apps/opt/usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing && /usr/bin/gmake clean stdout: for dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src' gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing && /usr/bin/gmake stdout: (cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/bfort-base.txt"' -DBASEPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/bfort-base.txt"' -DBASEPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing && /usr/bin/gmake install stdout: /usr/bin/install -c bin/bib2html /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bib2html /usr/bin/install -c src/doctext/doctext /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doctext /usr/bin/install -c src/doctext/doc2lt /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/tohtml if [ "`cd bin && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort /usr/bin/install -c src/mapnames/mapnames /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/bfort.1 ;\ fi ********Output of running make on sowing follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/bin/latex checking for gs... /glade/apps/opt/usr/bin/gs checking for pnmcrop... /usr/bin/pnmcrop checking for pbmtoxbm... /usr/bin/pbmtoxbm checking for ppmtogif... /usr/bin/ppmtogif checking for pnmquant... /usr/bin/pnmquant checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing default commandsfor dir in src docs ; do ( cd $dir && /usr/bin/gmake clean ) ; done gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src' for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /usr/bin/gmake clean ) ; done gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' rm -f *.o *~ gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /usr/bin/gmake clean ) gmake[3]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml/testing' rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out gmake[3]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml/testing' gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /usr/bin/gmake clean ; fi ) gmake[3]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit gmake[3]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext/test' /bin/rm -f doctext\ win32/debug/* gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' /bin/rm -f *.o *~ gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' /bin/rm -f *.o *~ mapnames ccc gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bib2html' rm -f tout.htm tout-bib.htm gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bib2html' gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src' gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs' rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /usr/bin/gmake clean) gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs/doctext' rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs/doctext' gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/docs' /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/sys' (cd src/tohtml && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tohtml.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tex2html.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c search.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c texactio.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rdaux.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rdindx.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c label.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c scan.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c refmap.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c style.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c dimen.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c userdef.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c tabular.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c biblio.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c environ.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c math.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c rddefs.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c latexinfo.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c accent.c gcc -DPSPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/"' -DBMSOURCE='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/"' -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt"' -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/tohtml' (cd src/bfort && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' gcc -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/bfort-base.txt"' -DBASEPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/bfort-base.txt"' -DBASEPATH='"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/bfort' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' (cd src/doctext && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/doctext' (cd src/textfilt && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' gmake[1]: Nothing to be done for `ALL'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/textfilt' (cd src/mapnames && /usr/bin/gmake ) gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames' c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/src/mapnames'../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xc15): warning: the use of `mktemp' is dangerous, better use `mkstemp' ../../lib/libsowing.a(file.o): In function `SYOpenWritableFile': file.c:(.text+0xc15): warning: the use of `mktemp' is dangerous, better use `mkstemp' doc2lt.cc:168:35: warning: missing terminating ' character /usr/bin/install -c bin/bib2html /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bib2html /usr/bin/install -c src/doctext/doctext /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doctext /usr/bin/install -c src/doctext/doc2lt /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/tohtml if [ "`cd bin && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort /usr/bin/install -c src/mapnames/mapnames /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/share/man/man1/bfort.1 ;\ fi********End of Output of running make on sowing ******* Executing: cp -f /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing/sowing.petscconf /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/sowing Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx Checking for program /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort...found Defined make macro "BFORT" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort" Checking for program /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doctext...found Defined make macro "DOCTEXT" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doctext" Checking for program /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/mapnames...found Defined make macro "MAPNAMES" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/mapnames" Checking for program /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bib2html...found Defined make macro "BIB2HTML" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bib2html" Running /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.pthread(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char pthread_create(); static void _check_pthread_create() { pthread_create(); } #ifdef __cplusplus } #endif int main() { _check_pthread_create();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for headers Compiler specific search PTHREAD: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/usr/include/pthread.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 24 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 25 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/sched.h" 1 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 28 "/usr/include/sched.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 31 "/usr/include/sched.h" 2 3 # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 typedef __time_t time_t; # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 35 "/usr/include/sched.h" 2 3 typedef __pid_t pid_t; # 1 "/usr/include/bits/sched.h" 1 3 # 36 "/usr/include/bits/sched.h" 3 # 72 "/usr/include/bits/sched.h" 3 struct sched_param { int __sched_priority; }; extern "C" { extern int clone (int (*__fn) (void *__arg), void *__child_stack, int __flags, void *__arg, ...) throw (); extern int unshare (int __flags) throw (); extern int sched_getcpu (void) throw (); } struct __sched_param { int __sched_priority; }; typedef unsigned long int __cpu_mask; typedef struct { __cpu_mask __bits[1024 / (8 * sizeof (__cpu_mask))]; } cpu_set_t; # 163 "/usr/include/bits/sched.h" 3 # 182 "/usr/include/bits/sched.h" 3 # 193 "/usr/include/bits/sched.h" 3 extern "C" { extern int __sched_cpucount (size_t __setsize, const cpu_set_t *__setp) throw (); extern cpu_set_t *__sched_cpualloc (size_t __count) throw () ; extern void __sched_cpufree (cpu_set_t *__set) throw (); } # 44 "/usr/include/sched.h" 2 3 extern "C" { extern int sched_setparam (__pid_t __pid, __const struct sched_param *__param) throw (); extern int sched_getparam (__pid_t __pid, struct sched_param *__param) throw (); extern int sched_setscheduler (__pid_t __pid, int __policy, __const struct sched_param *__param) throw (); extern int sched_getscheduler (__pid_t __pid) throw (); extern int sched_yield (void) throw (); extern int sched_get_priority_max (int __algorithm) throw (); extern int sched_get_priority_min (int __algorithm) throw (); extern int sched_rr_get_interval (__pid_t __pid, struct timespec *__t) throw (); # 86 "/usr/include/sched.h" 3 # 93 "/usr/include/sched.h" 3 # 111 "/usr/include/sched.h" 3 extern int sched_setaffinity (__pid_t __pid, size_t __cpusetsize, __const cpu_set_t *__cpuset) throw (); extern int sched_getaffinity (__pid_t __pid, size_t __cpusetsize, cpu_set_t *__cpuset) throw (); } # 26 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/time.h" 1 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 39 "/usr/include/time.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 43 "/usr/include/bits/time.h" 3 # 43 "/usr/include/time.h" 2 3 typedef __clock_t clock_t; # 84 "/usr/include/time.h" 3 typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long int tm_gmtoff; __const char *tm_zone; }; struct itimerspec { struct timespec it_interval; struct timespec it_value; }; struct sigevent; # 178 "/usr/include/time.h" 3 extern clock_t clock (void) throw (); extern time_t time (time_t *__timer) throw (); extern double difftime (time_t __time1, time_t __time0) throw () __attribute__ ((__const__)); extern time_t mktime (struct tm *__tp) throw (); extern size_t strftime (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp) throw (); extern char *strptime (__const char *__restrict __s, __const char *__restrict __fmt, struct tm *__tp) throw (); # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 216 "/usr/include/time.h" 2 3 extern size_t strftime_l (char *__restrict __s, size_t __maxsize, __const char *__restrict __format, __const struct tm *__restrict __tp, __locale_t __loc) throw (); extern char *strptime_l (__const char *__restrict __s, __const char *__restrict __fmt, struct tm *__tp, __locale_t __loc) throw (); extern struct tm *gmtime (__const time_t *__timer) throw (); extern struct tm *localtime (__const time_t *__timer) throw (); extern struct tm *gmtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern struct tm *localtime_r (__const time_t *__restrict __timer, struct tm *__restrict __tp) throw (); extern char *asctime (__const struct tm *__tp) throw (); extern char *ctime (__const time_t *__timer) throw (); extern char *asctime_r (__const struct tm *__restrict __tp, char *__restrict __buf) throw (); extern char *ctime_r (__const time_t *__restrict __timer, char *__restrict __buf) throw (); extern char *__tzname[2]; extern int __daylight; extern long int __timezone; extern char *tzname[2]; extern void tzset (void) throw (); extern int daylight; extern long int timezone; extern int stime (__const time_t *__when) throw (); extern time_t timegm (struct tm *__tp) throw (); extern time_t timelocal (struct tm *__tp) throw (); extern int dysize (int __year) throw () __attribute__ ((__const__)); extern int nanosleep (__const struct timespec *__requested_time, struct timespec *__remaining); extern int clock_getres (clockid_t __clock_id, struct timespec *__res) throw (); extern int clock_gettime (clockid_t __clock_id, struct timespec *__tp) throw (); extern int clock_settime (clockid_t __clock_id, __const struct timespec *__tp) throw (); extern int clock_nanosleep (clockid_t __clock_id, int __flags, __const struct timespec *__req, struct timespec *__rem); extern int clock_getcpuclockid (pid_t __pid, clockid_t *__clock_id) throw (); extern int timer_create (clockid_t __clock_id, struct sigevent *__restrict __evp, timer_t *__restrict __timerid) throw (); extern int timer_delete (timer_t __timerid) throw (); extern int timer_settime (timer_t __timerid, int __flags, __const struct itimerspec *__restrict __value, struct itimerspec *__restrict __ovalue) throw (); extern int timer_gettime (timer_t __timerid, struct itimerspec *__value) throw (); extern int timer_getoverrun (timer_t __timerid) throw (); extern int getdate_err; extern struct tm *getdate (__const char *__string); extern int getdate_r (__const char *__restrict __string, struct tm *__restrict __resbufp); } # 27 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 29 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/setjmp.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 28 "/usr/include/bits/setjmp.h" 2 3 typedef long int __jmp_buf[8]; # 30 "/usr/include/pthread.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 31 "/usr/include/pthread.h" 2 3 enum { PTHREAD_CREATE_JOINABLE, PTHREAD_CREATE_DETACHED }; enum { PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_ADAPTIVE_NP , PTHREAD_MUTEX_NORMAL = PTHREAD_MUTEX_TIMED_NP, PTHREAD_MUTEX_RECURSIVE = PTHREAD_MUTEX_RECURSIVE_NP, PTHREAD_MUTEX_ERRORCHECK = PTHREAD_MUTEX_ERRORCHECK_NP, PTHREAD_MUTEX_DEFAULT = PTHREAD_MUTEX_NORMAL , PTHREAD_MUTEX_FAST_NP = PTHREAD_MUTEX_TIMED_NP }; enum { PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_STALLED_NP = PTHREAD_MUTEX_STALLED, PTHREAD_MUTEX_ROBUST, PTHREAD_MUTEX_ROBUST_NP = PTHREAD_MUTEX_ROBUST }; enum { PTHREAD_PRIO_NONE, PTHREAD_PRIO_INHERIT, PTHREAD_PRIO_PROTECT }; # 111 "/usr/include/pthread.h" 3 enum { PTHREAD_RWLOCK_PREFER_READER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NP, PTHREAD_RWLOCK_PREFER_WRITER_NONRECURSIVE_NP, PTHREAD_RWLOCK_DEFAULT_NP = PTHREAD_RWLOCK_PREFER_READER_NP }; # 144 "/usr/include/pthread.h" 3 enum { PTHREAD_INHERIT_SCHED, PTHREAD_EXPLICIT_SCHED }; enum { PTHREAD_SCOPE_SYSTEM, PTHREAD_SCOPE_PROCESS }; enum { PTHREAD_PROCESS_PRIVATE, PTHREAD_PROCESS_SHARED }; struct _pthread_cleanup_buffer { void (*__routine) (void *); void *__arg; int __canceltype; struct _pthread_cleanup_buffer *__prev; }; enum { PTHREAD_CANCEL_ENABLE, PTHREAD_CANCEL_DISABLE }; enum { PTHREAD_CANCEL_DEFERRED, PTHREAD_CANCEL_ASYNCHRONOUS }; extern "C" { extern int pthread_create (pthread_t *__restrict __newthread, __const pthread_attr_t *__restrict __attr, void *(*__start_routine) (void *), void *__restrict __arg) throw () __attribute__ ((__nonnull__ (1, 3))); extern void pthread_exit (void *__retval) __attribute__ ((__noreturn__)); extern int pthread_join (pthread_t __th, void **__thread_return); extern int pthread_tryjoin_np (pthread_t __th, void **__thread_return) throw (); extern int pthread_timedjoin_np (pthread_t __th, void **__thread_return, __const struct timespec *__abstime); extern int pthread_detach (pthread_t __th) throw (); extern pthread_t pthread_self (void) throw () __attribute__ ((__const__)); extern int pthread_equal (pthread_t __thread1, pthread_t __thread2) throw (); extern int pthread_attr_init (pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_destroy (pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getdetachstate (__const pthread_attr_t *__attr, int *__detachstate) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setdetachstate (pthread_attr_t *__attr, int __detachstate) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getguardsize (__const pthread_attr_t *__attr, size_t *__guardsize) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setguardsize (pthread_attr_t *__attr, size_t __guardsize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getschedparam (__const pthread_attr_t *__restrict __attr, struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedparam (pthread_attr_t *__restrict __attr, __const struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_getschedpolicy (__const pthread_attr_t *__restrict __attr, int *__restrict __policy) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setschedpolicy (pthread_attr_t *__attr, int __policy) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getinheritsched (__const pthread_attr_t *__restrict __attr, int *__restrict __inherit) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setinheritsched (pthread_attr_t *__attr, int __inherit) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getscope (__const pthread_attr_t *__restrict __attr, int *__restrict __scope) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setscope (pthread_attr_t *__attr, int __scope) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstackaddr (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr) throw () __attribute__ ((__nonnull__ (1, 2))) __attribute__ ((__deprecated__)); extern int pthread_attr_setstackaddr (pthread_attr_t *__attr, void *__stackaddr) throw () __attribute__ ((__nonnull__ (1))) __attribute__ ((__deprecated__)); extern int pthread_attr_getstacksize (__const pthread_attr_t *__restrict __attr, size_t *__restrict __stacksize) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_attr_setstacksize (pthread_attr_t *__attr, size_t __stacksize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_getstack (__const pthread_attr_t *__restrict __attr, void **__restrict __stackaddr, size_t *__restrict __stacksize) throw () __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_attr_setstack (pthread_attr_t *__attr, void *__stackaddr, size_t __stacksize) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_attr_setaffinity_np (pthread_attr_t *__attr, size_t __cpusetsize, __const cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_attr_getaffinity_np (__const pthread_attr_t *__attr, size_t __cpusetsize, cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_getattr_np (pthread_t __th, pthread_attr_t *__attr) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_setschedparam (pthread_t __target_thread, int __policy, __const struct sched_param *__param) throw () __attribute__ ((__nonnull__ (3))); extern int pthread_getschedparam (pthread_t __target_thread, int *__restrict __policy, struct sched_param *__restrict __param) throw () __attribute__ ((__nonnull__ (2, 3))); extern int pthread_setschedprio (pthread_t __target_thread, int __prio) throw (); extern int pthread_getname_np (pthread_t __target_thread, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_setname_np (pthread_t __target_thread, __const char *__name) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_getconcurrency (void) throw (); extern int pthread_setconcurrency (int __level) throw (); extern int pthread_yield (void) throw (); extern int pthread_setaffinity_np (pthread_t __th, size_t __cpusetsize, __const cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (3))); extern int pthread_getaffinity_np (pthread_t __th, size_t __cpusetsize, cpu_set_t *__cpuset) throw () __attribute__ ((__nonnull__ (3))); extern int pthread_once (pthread_once_t *__once_control, void (*__init_routine) (void)) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_setcancelstate (int __state, int *__oldstate); extern int pthread_setcanceltype (int __type, int *__oldtype); extern int pthread_cancel (pthread_t __th); extern void pthread_testcancel (void); typedef struct { struct { __jmp_buf __cancel_jmp_buf; int __mask_was_saved; } __cancel_jmp_buf[1]; void *__pad[4]; } __pthread_unwind_buf_t __attribute__ ((__aligned__)); struct __pthread_cleanup_frame { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; }; class __pthread_cleanup_class { void (*__cancel_routine) (void *); void *__cancel_arg; int __do_it; int __cancel_type; public: __pthread_cleanup_class (void (*__fct) (void *), void *__arg) : __cancel_routine (__fct), __cancel_arg (__arg), __do_it (1) { } ~__pthread_cleanup_class () { if (__do_it) __cancel_routine (__cancel_arg); } void __setdoit (int __newval) { __do_it = __newval; } void __defer () { pthread_setcanceltype (PTHREAD_CANCEL_DEFERRED, &__cancel_type); } void __restore () const { pthread_setcanceltype (__cancel_type, 0); } }; # 724 "/usr/include/pthread.h" 3 struct __jmp_buf_tag; extern int __sigsetjmp (struct __jmp_buf_tag *__env, int __savemask) throw (); extern int pthread_mutex_init (pthread_mutex_t *__mutex, __const pthread_mutexattr_t *__mutexattr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_destroy (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_trylock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_lock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_timedlock (pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_unlock (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_getprioceiling (__const pthread_mutex_t * __restrict __mutex, int *__restrict __prioceiling) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutex_setprioceiling (pthread_mutex_t *__restrict __mutex, int __prioceiling, int *__restrict __old_ceiling) throw () __attribute__ ((__nonnull__ (1, 3))); extern int pthread_mutex_consistent (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutex_consistent_np (pthread_mutex_t *__mutex) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_init (pthread_mutexattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_destroy (pthread_mutexattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getpshared (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setpshared (pthread_mutexattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_gettype (__const pthread_mutexattr_t *__restrict __attr, int *__restrict __kind) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_settype (pthread_mutexattr_t *__attr, int __kind) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprotocol (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __protocol) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprotocol (pthread_mutexattr_t *__attr, int __protocol) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getprioceiling (__const pthread_mutexattr_t * __restrict __attr, int *__restrict __prioceiling) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setprioceiling (pthread_mutexattr_t *__attr, int __prioceiling) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_getrobust (__const pthread_mutexattr_t *__attr, int *__robustness) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_getrobust_np (__const pthread_mutexattr_t *__attr, int *__robustness) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_mutexattr_setrobust (pthread_mutexattr_t *__attr, int __robustness) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_mutexattr_setrobust_np (pthread_mutexattr_t *__attr, int __robustness) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_init (pthread_rwlock_t *__restrict __rwlock, __const pthread_rwlockattr_t *__restrict __attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_destroy (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_rdlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_tryrdlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedrdlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_wrlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_trywrlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlock_timedwrlock (pthread_rwlock_t *__restrict __rwlock, __const struct timespec *__restrict __abstime) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlock_unlock (pthread_rwlock_t *__rwlock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_init (pthread_rwlockattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_destroy (pthread_rwlockattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getpshared (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setpshared (pthread_rwlockattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_rwlockattr_getkind_np (__const pthread_rwlockattr_t * __restrict __attr, int *__restrict __pref) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_rwlockattr_setkind_np (pthread_rwlockattr_t *__attr, int __pref) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_init (pthread_cond_t *__restrict __cond, __const pthread_condattr_t *__restrict __cond_attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_destroy (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_signal (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_broadcast (pthread_cond_t *__cond) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_cond_wait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex) __attribute__ ((__nonnull__ (1, 2))); extern int pthread_cond_timedwait (pthread_cond_t *__restrict __cond, pthread_mutex_t *__restrict __mutex, __const struct timespec *__restrict __abstime) __attribute__ ((__nonnull__ (1, 2, 3))); extern int pthread_condattr_init (pthread_condattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_destroy (pthread_condattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getpshared (__const pthread_condattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setpshared (pthread_condattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_condattr_getclock (__const pthread_condattr_t * __restrict __attr, __clockid_t *__restrict __clock_id) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_condattr_setclock (pthread_condattr_t *__attr, __clockid_t __clock_id) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_init (pthread_spinlock_t *__lock, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_destroy (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_lock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_trylock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_spin_unlock (pthread_spinlock_t *__lock) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_init (pthread_barrier_t *__restrict __barrier, __const pthread_barrierattr_t *__restrict __attr, unsigned int __count) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_destroy (pthread_barrier_t *__barrier) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrier_wait (pthread_barrier_t *__barrier) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_init (pthread_barrierattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_destroy (pthread_barrierattr_t *__attr) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_barrierattr_getpshared (__const pthread_barrierattr_t * __restrict __attr, int *__restrict __pshared) throw () __attribute__ ((__nonnull__ (1, 2))); extern int pthread_barrierattr_setpshared (pthread_barrierattr_t *__attr, int __pshared) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_key_create (pthread_key_t *__key, void (*__destr_function) (void *)) throw () __attribute__ ((__nonnull__ (1))); extern int pthread_key_delete (pthread_key_t __key) throw (); extern void *pthread_getspecific (pthread_key_t __key) throw (); extern int pthread_setspecific (pthread_key_t __key, __const void *__pointer) throw () ; extern int pthread_getcpuclockid (pthread_t __thread_id, __clockid_t *__clock_id) throw () __attribute__ ((__nonnull__ (2))); extern int pthread_atfork (void (*__prepare) (void), void (*__parent) (void), void (*__child) (void)) throw (); # 1142 "/usr/include/pthread.h" 3 } # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Defined "HAVE_PTHREAD_BARRIER_T" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Defined "HAVE_SCHED_CPU_SET_T" to "1" Executing: mpicc -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread /glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conffix.h" 1 # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 23 "/usr/include/sys/sysctl.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; typedef int wchar_t; # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 25 "/usr/include/sys/sysctl.h" 2 3 # 43 "/usr/include/sys/sysctl.h" 3 # 1 "/usr/include/linux/sysctl.h" 1 3 # 1 "/usr/include/linux/kernel.h" 1 3 # 29 "/usr/include/linux/sysctl.h" 2 3 # 1 "/usr/include/linux/types.h" 1 3 # 30 "/usr/include/linux/sysctl.h" 2 3 struct completion; struct __sysctl_args { int *name; int nlen; void *oldval; size_t *oldlenp; void *newval; size_t newlen; unsigned long __unused[4]; }; enum { CTL_KERN=1, CTL_VM=2, CTL_NET=3, CTL_PROC=4, CTL_FS=5, CTL_DEBUG=6, CTL_DEV=7, CTL_BUS=8, CTL_ABI=9, CTL_CPU=10, CTL_ARLAN=254, CTL_S390DBF=5677, CTL_SUNRPC=7249, CTL_PM=9899, CTL_FRV=9898, }; enum { CTL_BUS_ISA=1 }; enum { INOTIFY_MAX_USER_INSTANCES=1, INOTIFY_MAX_USER_WATCHES=2, INOTIFY_MAX_QUEUED_EVENTS=3 }; enum { KERN_OSTYPE=1, KERN_OSRELEASE=2, KERN_OSREV=3, KERN_VERSION=4, KERN_SECUREMASK=5, KERN_PROF=6, KERN_NODENAME=7, KERN_DOMAINNAME=8, KERN_PANIC=15, KERN_REALROOTDEV=16, KERN_SPARC_REBOOT=21, KERN_CTLALTDEL=22, KERN_PRINTK=23, KERN_NAMETRANS=24, KERN_PPC_HTABRECLAIM=25, KERN_PPC_ZEROPAGED=26, KERN_PPC_POWERSAVE_NAP=27, KERN_MODPROBE=28, KERN_SG_BIG_BUFF=29, KERN_ACCT=30, KERN_PPC_L2CR=31, KERN_RTSIGNR=32, KERN_RTSIGMAX=33, KERN_SHMMAX=34, KERN_MSGMAX=35, KERN_MSGMNB=36, KERN_MSGPOOL=37, KERN_SYSRQ=38, KERN_MAX_THREADS=39, KERN_RANDOM=40, KERN_SHMALL=41, KERN_MSGMNI=42, KERN_SEM=43, KERN_SPARC_STOP_A=44, KERN_SHMMNI=45, KERN_OVERFLOWUID=46, KERN_OVERFLOWGID=47, KERN_SHMPATH=48, KERN_HOTPLUG=49, KERN_IEEE_EMULATION_WARNINGS=50, KERN_S390_USER_DEBUG_LOGGING=51, KERN_CORE_USES_PID=52, KERN_TAINTED=53, KERN_CADPID=54, KERN_PIDMAX=55, KERN_CORE_PATTERN=56, KERN_PANIC_ON_OOPS=57, KERN_HPPA_PWRSW=58, KERN_HPPA_UNALIGNED=59, KERN_PRINTK_RATELIMIT=60, KERN_PRINTK_RATELIMIT_BURST=61, KERN_PTY=62, KERN_NGROUPS_MAX=63, KERN_SPARC_SCONS_PWROFF=64, KERN_HZ_TIMER=65, KERN_UNKNOWN_NMI_PANIC=66, KERN_BOOTLOADER_TYPE=67, KERN_RANDOMIZE=68, KERN_SETUID_DUMPABLE=69, KERN_SPIN_RETRY=70, KERN_ACPI_VIDEO_FLAGS=71, KERN_IA64_UNALIGNED=72, KERN_COMPAT_LOG=73, KERN_MAX_LOCK_DEPTH=74, KERN_NMI_WATCHDOG=75, KERN_PANIC_ON_NMI=76, }; enum { VM_UNUSED1=1, VM_UNUSED2=2, VM_UNUSED3=3, VM_UNUSED4=4, VM_OVERCOMMIT_MEMORY=5, VM_UNUSED5=6, VM_UNUSED7=7, VM_UNUSED8=8, VM_UNUSED9=9, VM_PAGE_CLUSTER=10, VM_DIRTY_BACKGROUND=11, VM_DIRTY_RATIO=12, VM_DIRTY_WB_CS=13, VM_DIRTY_EXPIRE_CS=14, VM_NR_PDFLUSH_THREADS=15, VM_OVERCOMMIT_RATIO=16, VM_PAGEBUF=17, VM_HUGETLB_PAGES=18, VM_SWAPPINESS=19, VM_LOWMEM_RESERVE_RATIO=20, VM_MIN_FREE_KBYTES=21, VM_MAX_MAP_COUNT=22, VM_LAPTOP_MODE=23, VM_BLOCK_DUMP=24, VM_HUGETLB_GROUP=25, VM_VFS_CACHE_PRESSURE=26, VM_LEGACY_VA_LAYOUT=27, VM_SWAP_TOKEN_TIMEOUT=28, VM_DROP_PAGECACHE=29, VM_PERCPU_PAGELIST_FRACTION=30, VM_ZONE_RECLAIM_MODE=31, VM_MIN_UNMAPPED=32, VM_PANIC_ON_OOM=33, VM_VDSO_ENABLED=34, VM_MIN_SLAB=35, }; enum { NET_CORE=1, NET_ETHER=2, NET_802=3, NET_UNIX=4, NET_IPV4=5, NET_IPX=6, NET_ATALK=7, NET_NETROM=8, NET_AX25=9, NET_BRIDGE=10, NET_ROSE=11, NET_IPV6=12, NET_X25=13, NET_TR=14, NET_DECNET=15, NET_ECONET=16, NET_SCTP=17, NET_LLC=18, NET_NETFILTER=19, NET_DCCP=20, NET_IRDA=412, }; enum { RANDOM_POOLSIZE=1, RANDOM_ENTROPY_COUNT=2, RANDOM_READ_THRESH=3, RANDOM_WRITE_THRESH=4, RANDOM_BOOT_ID=5, RANDOM_UUID=6 }; enum { PTY_MAX=1, PTY_NR=2 }; enum { BUS_ISA_MEM_BASE=1, BUS_ISA_PORT_BASE=2, BUS_ISA_PORT_SHIFT=3 }; enum { NET_CORE_WMEM_MAX=1, NET_CORE_RMEM_MAX=2, NET_CORE_WMEM_DEFAULT=3, NET_CORE_RMEM_DEFAULT=4, NET_CORE_MAX_BACKLOG=6, NET_CORE_FASTROUTE=7, NET_CORE_MSG_COST=8, NET_CORE_MSG_BURST=9, NET_CORE_OPTMEM_MAX=10, NET_CORE_HOT_LIST_LENGTH=11, NET_CORE_DIVERT_VERSION=12, NET_CORE_NO_CONG_THRESH=13, NET_CORE_NO_CONG=14, NET_CORE_LO_CONG=15, NET_CORE_MOD_CONG=16, NET_CORE_DEV_WEIGHT=17, NET_CORE_SOMAXCONN=18, NET_CORE_BUDGET=19, NET_CORE_AEVENT_ETIME=20, NET_CORE_AEVENT_RSEQTH=21, NET_CORE_WARNINGS=22, }; enum { NET_UNIX_DESTROY_DELAY=1, NET_UNIX_DELETE_DELAY=2, NET_UNIX_MAX_DGRAM_QLEN=3, }; enum { NET_NF_CONNTRACK_MAX=1, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_NF_CONNTRACK_UDP_TIMEOUT=10, NET_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_NF_CONNTRACK_BUCKETS=14, NET_NF_CONNTRACK_LOG_INVALID=15, NET_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_NF_CONNTRACK_TCP_LOOSE=17, NET_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_NF_CONNTRACK_COUNT=27, NET_NF_CONNTRACK_ICMPV6_TIMEOUT=28, NET_NF_CONNTRACK_FRAG6_TIMEOUT=29, NET_NF_CONNTRACK_FRAG6_LOW_THRESH=30, NET_NF_CONNTRACK_FRAG6_HIGH_THRESH=31, NET_NF_CONNTRACK_CHECKSUM=32, }; enum { NET_IPV4_FORWARD=8, NET_IPV4_DYNADDR=9, NET_IPV4_CONF=16, NET_IPV4_NEIGH=17, NET_IPV4_ROUTE=18, NET_IPV4_FIB_HASH=19, NET_IPV4_NETFILTER=20, NET_IPV4_TCP_TIMESTAMPS=33, NET_IPV4_TCP_WINDOW_SCALING=34, NET_IPV4_TCP_SACK=35, NET_IPV4_TCP_RETRANS_COLLAPSE=36, NET_IPV4_DEFAULT_TTL=37, NET_IPV4_AUTOCONFIG=38, NET_IPV4_NO_PMTU_DISC=39, NET_IPV4_TCP_SYN_RETRIES=40, NET_IPV4_IPFRAG_HIGH_THRESH=41, NET_IPV4_IPFRAG_LOW_THRESH=42, NET_IPV4_IPFRAG_TIME=43, NET_IPV4_TCP_MAX_KA_PROBES=44, NET_IPV4_TCP_KEEPALIVE_TIME=45, NET_IPV4_TCP_KEEPALIVE_PROBES=46, NET_IPV4_TCP_RETRIES1=47, NET_IPV4_TCP_RETRIES2=48, NET_IPV4_TCP_FIN_TIMEOUT=49, NET_IPV4_IP_MASQ_DEBUG=50, NET_TCP_SYNCOOKIES=51, NET_TCP_STDURG=52, NET_TCP_RFC1337=53, NET_TCP_SYN_TAILDROP=54, NET_TCP_MAX_SYN_BACKLOG=55, NET_IPV4_LOCAL_PORT_RANGE=56, NET_IPV4_ICMP_ECHO_IGNORE_ALL=57, NET_IPV4_ICMP_ECHO_IGNORE_BROADCASTS=58, NET_IPV4_ICMP_SOURCEQUENCH_RATE=59, NET_IPV4_ICMP_DESTUNREACH_RATE=60, NET_IPV4_ICMP_TIMEEXCEED_RATE=61, NET_IPV4_ICMP_PARAMPROB_RATE=62, NET_IPV4_ICMP_ECHOREPLY_RATE=63, NET_IPV4_ICMP_IGNORE_BOGUS_ERROR_RESPONSES=64, NET_IPV4_IGMP_MAX_MEMBERSHIPS=65, NET_TCP_TW_RECYCLE=66, NET_IPV4_ALWAYS_DEFRAG=67, NET_IPV4_TCP_KEEPALIVE_INTVL=68, NET_IPV4_INET_PEER_THRESHOLD=69, NET_IPV4_INET_PEER_MINTTL=70, NET_IPV4_INET_PEER_MAXTTL=71, NET_IPV4_INET_PEER_GC_MINTIME=72, NET_IPV4_INET_PEER_GC_MAXTIME=73, NET_TCP_ORPHAN_RETRIES=74, NET_TCP_ABORT_ON_OVERFLOW=75, NET_TCP_SYNACK_RETRIES=76, NET_TCP_MAX_ORPHANS=77, NET_TCP_MAX_TW_BUCKETS=78, NET_TCP_FACK=79, NET_TCP_REORDERING=80, NET_TCP_ECN=81, NET_TCP_DSACK=82, NET_TCP_MEM=83, NET_TCP_WMEM=84, NET_TCP_RMEM=85, NET_TCP_APP_WIN=86, NET_TCP_ADV_WIN_SCALE=87, NET_IPV4_NONLOCAL_BIND=88, NET_IPV4_ICMP_RATELIMIT=89, NET_IPV4_ICMP_RATEMASK=90, NET_TCP_TW_REUSE=91, NET_TCP_FRTO=92, NET_TCP_LOW_LATENCY=93, NET_IPV4_IPFRAG_SECRET_INTERVAL=94, NET_IPV4_IGMP_MAX_MSF=96, NET_TCP_NO_METRICS_SAVE=97, NET_TCP_DEFAULT_WIN_SCALE=105, NET_TCP_MODERATE_RCVBUF=106, NET_TCP_TSO_WIN_DIVISOR=107, NET_TCP_BIC_BETA=108, NET_IPV4_ICMP_ERRORS_USE_INBOUND_IFADDR=109, NET_TCP_CONG_CONTROL=110, NET_TCP_ABC=111, NET_IPV4_IPFRAG_MAX_DIST=112, NET_TCP_MTU_PROBING=113, NET_TCP_BASE_MSS=114, NET_IPV4_TCP_WORKAROUND_SIGNED_WINDOWS=115, NET_TCP_DMA_COPYBREAK=116, NET_TCP_SLOW_START_AFTER_IDLE=117, NET_CIPSOV4_CACHE_ENABLE=118, NET_CIPSOV4_CACHE_BUCKET_SIZE=119, NET_CIPSOV4_RBM_OPTFMT=120, NET_CIPSOV4_RBM_STRICTVALID=121, NET_TCP_AVAIL_CONG_CONTROL=122, NET_TCP_ALLOWED_CONG_CONTROL=123, NET_TCP_MAX_SSTHRESH=124, NET_TCP_FRTO_RESPONSE=125, }; enum { NET_IPV4_ROUTE_FLUSH=1, NET_IPV4_ROUTE_MIN_DELAY=2, NET_IPV4_ROUTE_MAX_DELAY=3, NET_IPV4_ROUTE_GC_THRESH=4, NET_IPV4_ROUTE_MAX_SIZE=5, NET_IPV4_ROUTE_GC_MIN_INTERVAL=6, NET_IPV4_ROUTE_GC_TIMEOUT=7, NET_IPV4_ROUTE_GC_INTERVAL=8, NET_IPV4_ROUTE_REDIRECT_LOAD=9, NET_IPV4_ROUTE_REDIRECT_NUMBER=10, NET_IPV4_ROUTE_REDIRECT_SILENCE=11, NET_IPV4_ROUTE_ERROR_COST=12, NET_IPV4_ROUTE_ERROR_BURST=13, NET_IPV4_ROUTE_GC_ELASTICITY=14, NET_IPV4_ROUTE_MTU_EXPIRES=15, NET_IPV4_ROUTE_MIN_PMTU=16, NET_IPV4_ROUTE_MIN_ADVMSS=17, NET_IPV4_ROUTE_SECRET_INTERVAL=18, NET_IPV4_ROUTE_GC_MIN_INTERVAL_MS=19, }; enum { NET_PROTO_CONF_ALL=-2, NET_PROTO_CONF_DEFAULT=-3 }; enum { NET_IPV4_CONF_FORWARDING=1, NET_IPV4_CONF_MC_FORWARDING=2, NET_IPV4_CONF_PROXY_ARP=3, NET_IPV4_CONF_ACCEPT_REDIRECTS=4, NET_IPV4_CONF_SECURE_REDIRECTS=5, NET_IPV4_CONF_SEND_REDIRECTS=6, NET_IPV4_CONF_SHARED_MEDIA=7, NET_IPV4_CONF_RP_FILTER=8, NET_IPV4_CONF_ACCEPT_SOURCE_ROUTE=9, NET_IPV4_CONF_BOOTP_RELAY=10, NET_IPV4_CONF_LOG_MARTIANS=11, NET_IPV4_CONF_TAG=12, NET_IPV4_CONF_ARPFILTER=13, NET_IPV4_CONF_MEDIUM_ID=14, NET_IPV4_CONF_NOXFRM=15, NET_IPV4_CONF_NOPOLICY=16, NET_IPV4_CONF_FORCE_IGMP_VERSION=17, NET_IPV4_CONF_ARP_ANNOUNCE=18, NET_IPV4_CONF_ARP_IGNORE=19, NET_IPV4_CONF_PROMOTE_SECONDARIES=20, NET_IPV4_CONF_ARP_ACCEPT=21, NET_IPV4_CONF_ARP_NOTIFY=22, NET_IPV4_CONF_ACCEPT_LOCAL=23, NET_IPV4_CONF_SRC_VMARK=24, NET_IPV4_CONF_PROXY_ARP_PVLAN=25, NET_IPV4_CONF_ROUTE_LOCALNET=26, __NET_IPV4_CONF_MAX }; enum { NET_IPV4_NF_CONNTRACK_MAX=1, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_SENT=2, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_SYN_RECV=3, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_ESTABLISHED=4, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_FIN_WAIT=5, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE_WAIT=6, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_LAST_ACK=7, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_TIME_WAIT=8, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_CLOSE=9, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT=10, NET_IPV4_NF_CONNTRACK_UDP_TIMEOUT_STREAM=11, NET_IPV4_NF_CONNTRACK_ICMP_TIMEOUT=12, NET_IPV4_NF_CONNTRACK_GENERIC_TIMEOUT=13, NET_IPV4_NF_CONNTRACK_BUCKETS=14, NET_IPV4_NF_CONNTRACK_LOG_INVALID=15, NET_IPV4_NF_CONNTRACK_TCP_TIMEOUT_MAX_RETRANS=16, NET_IPV4_NF_CONNTRACK_TCP_LOOSE=17, NET_IPV4_NF_CONNTRACK_TCP_BE_LIBERAL=18, NET_IPV4_NF_CONNTRACK_TCP_MAX_RETRANS=19, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_CLOSED=20, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_WAIT=21, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_COOKIE_ECHOED=22, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_ESTABLISHED=23, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_SENT=24, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_RECD=25, NET_IPV4_NF_CONNTRACK_SCTP_TIMEOUT_SHUTDOWN_ACK_SENT=26, NET_IPV4_NF_CONNTRACK_COUNT=27, NET_IPV4_NF_CONNTRACK_CHECKSUM=28, }; enum { NET_IPV6_CONF=16, NET_IPV6_NEIGH=17, NET_IPV6_ROUTE=18, NET_IPV6_ICMP=19, NET_IPV6_BINDV6ONLY=20, NET_IPV6_IP6FRAG_HIGH_THRESH=21, NET_IPV6_IP6FRAG_LOW_THRESH=22, NET_IPV6_IP6FRAG_TIME=23, NET_IPV6_IP6FRAG_SECRET_INTERVAL=24, NET_IPV6_MLD_MAX_MSF=25, }; enum { NET_IPV6_ROUTE_FLUSH=1, NET_IPV6_ROUTE_GC_THRESH=2, NET_IPV6_ROUTE_MAX_SIZE=3, NET_IPV6_ROUTE_GC_MIN_INTERVAL=4, NET_IPV6_ROUTE_GC_TIMEOUT=5, NET_IPV6_ROUTE_GC_INTERVAL=6, NET_IPV6_ROUTE_GC_ELASTICITY=7, NET_IPV6_ROUTE_MTU_EXPIRES=8, NET_IPV6_ROUTE_MIN_ADVMSS=9, NET_IPV6_ROUTE_GC_MIN_INTERVAL_MS=10 }; enum { NET_IPV6_FORWARDING=1, NET_IPV6_HOP_LIMIT=2, NET_IPV6_MTU=3, NET_IPV6_ACCEPT_RA=4, NET_IPV6_ACCEPT_REDIRECTS=5, NET_IPV6_AUTOCONF=6, NET_IPV6_DAD_TRANSMITS=7, NET_IPV6_RTR_SOLICITS=8, NET_IPV6_RTR_SOLICIT_INTERVAL=9, NET_IPV6_RTR_SOLICIT_DELAY=10, NET_IPV6_USE_TEMPADDR=11, NET_IPV6_TEMP_VALID_LFT=12, NET_IPV6_TEMP_PREFERED_LFT=13, NET_IPV6_REGEN_MAX_RETRY=14, NET_IPV6_MAX_DESYNC_FACTOR=15, NET_IPV6_MAX_ADDRESSES=16, NET_IPV6_FORCE_MLD_VERSION=17, NET_IPV6_ACCEPT_RA_DEFRTR=18, NET_IPV6_ACCEPT_RA_PINFO=19, NET_IPV6_ACCEPT_RA_RTR_PREF=20, NET_IPV6_RTR_PROBE_INTERVAL=21, NET_IPV6_ACCEPT_RA_RT_INFO_MAX_PLEN=22, NET_IPV6_PROXY_NDP=23, NET_IPV6_ACCEPT_SOURCE_ROUTE=25, __NET_IPV6_MAX }; enum { NET_IPV6_ICMP_RATELIMIT=1 }; enum { NET_NEIGH_MCAST_SOLICIT=1, NET_NEIGH_UCAST_SOLICIT=2, NET_NEIGH_APP_SOLICIT=3, NET_NEIGH_RETRANS_TIME=4, NET_NEIGH_REACHABLE_TIME=5, NET_NEIGH_DELAY_PROBE_TIME=6, NET_NEIGH_GC_STALE_TIME=7, NET_NEIGH_UNRES_QLEN=8, NET_NEIGH_PROXY_QLEN=9, NET_NEIGH_ANYCAST_DELAY=10, NET_NEIGH_PROXY_DELAY=11, NET_NEIGH_LOCKTIME=12, NET_NEIGH_GC_INTERVAL=13, NET_NEIGH_GC_THRESH1=14, NET_NEIGH_GC_THRESH2=15, NET_NEIGH_GC_THRESH3=16, NET_NEIGH_RETRANS_TIME_MS=17, NET_NEIGH_REACHABLE_TIME_MS=18, __NET_NEIGH_MAX }; enum { NET_DCCP_DEFAULT=1, }; enum { NET_IPX_PPROP_BROADCASTING=1, NET_IPX_FORWARDING=2 }; enum { NET_LLC2=1, NET_LLC_STATION=2, }; enum { NET_LLC2_TIMEOUT=1, }; enum { NET_LLC_STATION_ACK_TIMEOUT=1, }; enum { NET_LLC2_ACK_TIMEOUT=1, NET_LLC2_P_TIMEOUT=2, NET_LLC2_REJ_TIMEOUT=3, NET_LLC2_BUSY_TIMEOUT=4, }; enum { NET_ATALK_AARP_EXPIRY_TIME=1, NET_ATALK_AARP_TICK_TIME=2, NET_ATALK_AARP_RETRANSMIT_LIMIT=3, NET_ATALK_AARP_RESOLVE_TIME=4 }; enum { NET_NETROM_DEFAULT_PATH_QUALITY=1, NET_NETROM_OBSOLESCENCE_COUNT_INITIALISER=2, NET_NETROM_NETWORK_TTL_INITIALISER=3, NET_NETROM_TRANSPORT_TIMEOUT=4, NET_NETROM_TRANSPORT_MAXIMUM_TRIES=5, NET_NETROM_TRANSPORT_ACKNOWLEDGE_DELAY=6, NET_NETROM_TRANSPORT_BUSY_DELAY=7, NET_NETROM_TRANSPORT_REQUESTED_WINDOW_SIZE=8, NET_NETROM_TRANSPORT_NO_ACTIVITY_TIMEOUT=9, NET_NETROM_ROUTING_CONTROL=10, NET_NETROM_LINK_FAILS_COUNT=11, NET_NETROM_RESET=12 }; enum { NET_AX25_IP_DEFAULT_MODE=1, NET_AX25_DEFAULT_MODE=2, NET_AX25_BACKOFF_TYPE=3, NET_AX25_CONNECT_MODE=4, NET_AX25_STANDARD_WINDOW=5, NET_AX25_EXTENDED_WINDOW=6, NET_AX25_T1_TIMEOUT=7, NET_AX25_T2_TIMEOUT=8, NET_AX25_T3_TIMEOUT=9, NET_AX25_IDLE_TIMEOUT=10, NET_AX25_N2=11, NET_AX25_PACLEN=12, NET_AX25_PROTOCOL=13, NET_AX25_DAMA_SLAVE_TIMEOUT=14 }; enum { NET_ROSE_RESTART_REQUEST_TIMEOUT=1, NET_ROSE_CALL_REQUEST_TIMEOUT=2, NET_ROSE_RESET_REQUEST_TIMEOUT=3, NET_ROSE_CLEAR_REQUEST_TIMEOUT=4, NET_ROSE_ACK_HOLD_BACK_TIMEOUT=5, NET_ROSE_ROUTING_CONTROL=6, NET_ROSE_LINK_FAIL_TIMEOUT=7, NET_ROSE_MAX_VCS=8, NET_ROSE_WINDOW_SIZE=9, NET_ROSE_NO_ACTIVITY_TIMEOUT=10 }; enum { NET_X25_RESTART_REQUEST_TIMEOUT=1, NET_X25_CALL_REQUEST_TIMEOUT=2, NET_X25_RESET_REQUEST_TIMEOUT=3, NET_X25_CLEAR_REQUEST_TIMEOUT=4, NET_X25_ACK_HOLD_BACK_TIMEOUT=5, NET_X25_FORWARD=6 }; enum { NET_TR_RIF_TIMEOUT=1 }; enum { NET_DECNET_NODE_TYPE = 1, NET_DECNET_NODE_ADDRESS = 2, NET_DECNET_NODE_NAME = 3, NET_DECNET_DEFAULT_DEVICE = 4, NET_DECNET_TIME_WAIT = 5, NET_DECNET_DN_COUNT = 6, NET_DECNET_DI_COUNT = 7, NET_DECNET_DR_COUNT = 8, NET_DECNET_DST_GC_INTERVAL = 9, NET_DECNET_CONF = 10, NET_DECNET_NO_FC_MAX_CWND = 11, NET_DECNET_MEM = 12, NET_DECNET_RMEM = 13, NET_DECNET_WMEM = 14, NET_DECNET_DEBUG_LEVEL = 255 }; enum { NET_DECNET_CONF_LOOPBACK = -2, NET_DECNET_CONF_DDCMP = -3, NET_DECNET_CONF_PPP = -4, NET_DECNET_CONF_X25 = -5, NET_DECNET_CONF_GRE = -6, NET_DECNET_CONF_ETHER = -7 }; enum { NET_DECNET_CONF_DEV_PRIORITY = 1, NET_DECNET_CONF_DEV_T1 = 2, NET_DECNET_CONF_DEV_T2 = 3, NET_DECNET_CONF_DEV_T3 = 4, NET_DECNET_CONF_DEV_FORWARDING = 5, NET_DECNET_CONF_DEV_BLKSIZE = 6, NET_DECNET_CONF_DEV_STATE = 7 }; enum { NET_SCTP_RTO_INITIAL = 1, NET_SCTP_RTO_MIN = 2, NET_SCTP_RTO_MAX = 3, NET_SCTP_RTO_ALPHA = 4, NET_SCTP_RTO_BETA = 5, NET_SCTP_VALID_COOKIE_LIFE = 6, NET_SCTP_ASSOCIATION_MAX_RETRANS = 7, NET_SCTP_PATH_MAX_RETRANS = 8, NET_SCTP_MAX_INIT_RETRANSMITS = 9, NET_SCTP_HB_INTERVAL = 10, NET_SCTP_PRESERVE_ENABLE = 11, NET_SCTP_MAX_BURST = 12, NET_SCTP_ADDIP_ENABLE = 13, NET_SCTP_PRSCTP_ENABLE = 14, NET_SCTP_SNDBUF_POLICY = 15, NET_SCTP_SACK_TIMEOUT = 16, NET_SCTP_RCVBUF_POLICY = 17, }; enum { NET_BRIDGE_NF_CALL_ARPTABLES = 1, NET_BRIDGE_NF_CALL_IPTABLES = 2, NET_BRIDGE_NF_CALL_IP6TABLES = 3, NET_BRIDGE_NF_FILTER_VLAN_TAGGED = 4, NET_BRIDGE_NF_FILTER_PPPOE_TAGGED = 5, }; enum { NET_IRDA_DISCOVERY=1, NET_IRDA_DEVNAME=2, NET_IRDA_DEBUG=3, NET_IRDA_FAST_POLL=4, NET_IRDA_DISCOVERY_SLOTS=5, NET_IRDA_DISCOVERY_TIMEOUT=6, NET_IRDA_SLOT_TIMEOUT=7, NET_IRDA_MAX_BAUD_RATE=8, NET_IRDA_MIN_TX_TURN_TIME=9, NET_IRDA_MAX_TX_DATA_SIZE=10, NET_IRDA_MAX_TX_WINDOW=11, NET_IRDA_MAX_NOREPLY_TIME=12, NET_IRDA_WARN_NOREPLY_TIME=13, NET_IRDA_LAP_KEEPALIVE_TIME=14, }; enum { FS_NRINODE=1, FS_STATINODE=2, FS_MAXINODE=3, FS_NRDQUOT=4, FS_MAXDQUOT=5, FS_NRFILE=6, FS_MAXFILE=7, FS_DENTRY=8, FS_NRSUPER=9, FS_MAXSUPER=10, FS_OVERFLOWUID=11, FS_OVERFLOWGID=12, FS_LEASES=13, FS_DIR_NOTIFY=14, FS_LEASE_TIME=15, FS_DQSTATS=16, FS_XFS=17, FS_AIO_NR=18, FS_AIO_MAX_NR=19, FS_INOTIFY=20, FS_OCFS2=988, }; enum { FS_DQ_LOOKUPS = 1, FS_DQ_DROPS = 2, FS_DQ_READS = 3, FS_DQ_WRITES = 4, FS_DQ_CACHE_HITS = 5, FS_DQ_ALLOCATED = 6, FS_DQ_FREE = 7, FS_DQ_SYNCS = 8, FS_DQ_WARNINGS = 9, }; enum { DEV_CDROM=1, DEV_HWMON=2, DEV_PARPORT=3, DEV_RAID=4, DEV_MAC_HID=5, DEV_SCSI=6, DEV_IPMI=7, }; enum { DEV_CDROM_INFO=1, DEV_CDROM_AUTOCLOSE=2, DEV_CDROM_AUTOEJECT=3, DEV_CDROM_DEBUG=4, DEV_CDROM_LOCK=5, DEV_CDROM_CHECK_MEDIA=6 }; enum { DEV_PARPORT_DEFAULT=-3 }; enum { DEV_RAID_SPEED_LIMIT_MIN=1, DEV_RAID_SPEED_LIMIT_MAX=2 }; enum { DEV_PARPORT_DEFAULT_TIMESLICE=1, DEV_PARPORT_DEFAULT_SPINTIME=2 }; enum { DEV_PARPORT_SPINTIME=1, DEV_PARPORT_BASE_ADDR=2, DEV_PARPORT_IRQ=3, DEV_PARPORT_DMA=4, DEV_PARPORT_MODES=5, DEV_PARPORT_DEVICES=6, DEV_PARPORT_AUTOPROBE=16 }; enum { DEV_PARPORT_DEVICES_ACTIVE=-3, }; enum { DEV_PARPORT_DEVICE_TIMESLICE=1, }; enum { DEV_MAC_HID_KEYBOARD_SENDS_LINUX_KEYCODES=1, DEV_MAC_HID_KEYBOARD_LOCK_KEYCODES=2, DEV_MAC_HID_MOUSE_BUTTON_EMULATION=3, DEV_MAC_HID_MOUSE_BUTTON2_KEYCODE=4, DEV_MAC_HID_MOUSE_BUTTON3_KEYCODE=5, DEV_MAC_HID_ADB_MOUSE_SENDS_KEYCODES=6 }; enum { DEV_SCSI_LOGGING_LEVEL=1, }; enum { DEV_IPMI_POWEROFF_POWERCYCLE=1, }; enum { ABI_DEFHANDLER_COFF=1, ABI_DEFHANDLER_ELF=2, ABI_DEFHANDLER_LCALL7=3, ABI_DEFHANDLER_LIBCSO=4, ABI_TRACE=5, ABI_FAKE_UTSNAME=6, }; # 45 "/usr/include/sys/sysctl.h" 2 3 # 63 "/usr/include/sys/sysctl.h" 3 extern int sysctl (int *__name, int __nlen, void *__oldval, size_t *__oldlenp, void *__newval, size_t __newlen) __attribute__ ((__nothrow__)); # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.papi(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/lgrind...not found Checking for program /glade/u/home/fandek/bin/lgrind...not found Checking for program ./lgrind...not found Checking for program /usr/lib64/qt-3.3/bin/lgrind...not found Checking for program /glade/apps/opt/modulefiles/ys/cmpwrappers/lgrind...not found Checking for program /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/lgrind...not found Checking for program /glade/apps/opt/usr/bin/lgrind...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/etc/lgrind...not found Checking for program /ncar/opt/lsf/9.1/linux2.6-glibc2.3-x86_64/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /usr/local/openssh/5.7p1krb/bin/lgrind...not found Checking for program /usr/lpp/mmfs/bin/lgrind...not found Checking for program /opt/ibutils/bin/lgrind...not found Checking for program /ncar/opt/hpss/lgrind...not found Checking for program /glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/bin/lgrind...not found Checking for program /glade/u/home/fandek/lgrind...not found Checking for program /glade/p/work/fandek/petsc/bin/win32fe/lgrind...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ctetgen(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cgns(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.cgns(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Not checking for C2html ================================================================================ TEST alternateConfigureLibrary from config.packages.boost(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.boost(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.hwloc(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_hwloc_topology_init': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `hwloc_topology_init' Popping language Cxx Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lhwloc -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lhwloc -lxml2 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['games', 'libexec', 'bin', 'src', 'etc', 'sbin', 'lib', 'krb5', 'include', 'share', 'openssh', 'lib64'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['games', 'libexec', 'bin', 'src', 'etc', 'sbin', 'lib', 'krb5', 'include', 'share', 'openssh', 'lib64'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a'] Contents: ['games', 'libexec', 'bin', 'src', 'etc', 'sbin', 'lib', 'krb5', 'include', 'share', 'openssh', 'lib64'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx Checking for library in Package specific search directory HWLOC: ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] Contents: ['games', 'libexec', 'bin', 'src', 'etc', 'sbin', 'lib', 'krb5', 'include', 'share', 'openssh', 'lib64'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib64/libhwloc.a', 'libxml2.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } #ifdef __cplusplus } #endif int main() { _check_hwloc_topology_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib64 -L/usr/local/lib64 -lhwloc -lxml2 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: cannot find -lhwloc Popping language Cxx HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.X(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.X(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional X Checking for library in Compiler specific search X: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library [] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } #ifdef __cplusplus } #endif int main() { _check_XSetWMName();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_XSetWMName': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc:9: undefined reference to `XSetWMName' Popping language Cxx Checking for library in Compiler specific search X: ['libX11.a'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [XSetWMName] in library ['libX11.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char XSetWMName(); static void _check_XSetWMName() { XSetWMName(); } #ifdef __cplusplus } #endif int main() { _check_XSetWMName();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -lX11 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBX11" to "1" Popping language Cxx Checking for headers Compiler specific search X: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['X11/Xlib.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/usr/include/X11/Xlib.h" 1 3 # 1 "/usr/include/sys/types.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/sys/types.h" 2 3 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 56 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 94 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 } # 39 "/usr/include/X11/Xlib.h" 2 3 # 1 "/usr/include/X11/X.h" 1 3 typedef unsigned long XID; typedef unsigned long Mask; typedef unsigned long Atom; typedef unsigned long VisualID; typedef unsigned long Time; # 95 "/usr/include/X11/X.h" 3 typedef XID Window; typedef XID Drawable; typedef XID Font; typedef XID Pixmap; typedef XID Cursor; typedef XID Colormap; typedef XID GContext; typedef XID KeySym; typedef unsigned char KeyCode; # 176 "/usr/include/X11/X.h" 3 # 216 "/usr/include/X11/X.h" 3 # 229 "/usr/include/X11/X.h" 3 # 241 "/usr/include/X11/X.h" 3 # 284 "/usr/include/X11/X.h" 3 # 339 "/usr/include/X11/X.h" 3 # 376 "/usr/include/X11/X.h" 3 # 407 "/usr/include/X11/X.h" 3 # 417 "/usr/include/X11/X.h" 3 # 432 "/usr/include/X11/X.h" 3 # 501 "/usr/include/X11/X.h" 3 # 587 "/usr/include/X11/X.h" 3 # 657 "/usr/include/X11/X.h" 3 # 710 "/usr/include/X11/X.h" 3 # 45 "/usr/include/X11/Xlib.h" 2 3 # 1 "/usr/include/X11/Xfuncproto.h" 1 3 # 58 "/usr/include/X11/Xfuncproto.h" 3 # 66 "/usr/include/X11/Xfuncproto.h" 3 # 78 "/usr/include/X11/Xfuncproto.h" 3 # 100 "/usr/include/X11/Xfuncproto.h" 3 # 109 "/usr/include/X11/Xfuncproto.h" 3 # 124 "/usr/include/X11/Xfuncproto.h" 3 # 160 "/usr/include/X11/Xfuncproto.h" 3 # 173 "/usr/include/X11/Xfuncproto.h" 3 # 48 "/usr/include/X11/Xlib.h" 2 3 # 1 "/usr/include/X11/Xosdefs.h" 1 3 # 53 "/usr/include/X11/Xosdefs.h" 3 # 66 "/usr/include/X11/Xosdefs.h" 3 # 89 "/usr/include/X11/Xosdefs.h" 3 # 98 "/usr/include/X11/Xosdefs.h" 3 # 107 "/usr/include/X11/Xosdefs.h" 3 # 114 "/usr/include/X11/Xosdefs.h" 3 # 49 "/usr/include/X11/Xlib.h" 2 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 52 "/usr/include/X11/Xlib.h" 2 3 # 60 "/usr/include/X11/Xlib.h" 3 # 68 "/usr/include/X11/Xlib.h" 3 extern int _Xmblen( char *str, int len ); typedef char *XPointer; # 129 "/usr/include/X11/Xlib.h" 3 # 152 "/usr/include/X11/Xlib.h" 3 typedef struct _XExtData { int number; struct _XExtData *next; int (*free_private)( struct _XExtData *extension ); XPointer private_data; } XExtData; typedef struct { int extension; int major_opcode; int first_event; int first_error; } XExtCodes; typedef struct { int depth; int bits_per_pixel; int scanline_pad; } XPixmapFormatValues; typedef struct { int function; unsigned long plane_mask; unsigned long foreground; unsigned long background; int line_width; int line_style; int cap_style; int join_style; int fill_style; int fill_rule; int arc_mode; Pixmap tile; Pixmap stipple; int ts_x_origin; int ts_y_origin; Font font; int subwindow_mode; int graphics_exposures; int clip_x_origin; int clip_y_origin; Pixmap clip_mask; int dash_offset; char dashes; } XGCValues; typedef struct _XGC # 230 "/usr/include/X11/Xlib.h" 3 *GC; typedef struct { XExtData *ext_data; VisualID visualid; int c_class; unsigned long red_mask, green_mask, blue_mask; int bits_per_rgb; int map_entries; } Visual; typedef struct { int depth; int nvisuals; Visual *visuals; } Depth; struct _XDisplay; typedef struct { XExtData *ext_data; struct _XDisplay *display; Window root; int width, height; int mwidth, mheight; int ndepths; Depth *depths; int root_depth; Visual *root_visual; GC default_gc; Colormap cmap; unsigned long white_pixel; unsigned long black_pixel; int max_maps, min_maps; int backing_store; int save_unders; long root_input_mask; } Screen; typedef struct { XExtData *ext_data; int depth; int bits_per_pixel; int scanline_pad; } ScreenFormat; typedef struct { Pixmap background_pixmap; unsigned long background_pixel; Pixmap border_pixmap; unsigned long border_pixel; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; long event_mask; long do_not_propagate_mask; int override_redirect; Colormap colormap; Cursor cursor; } XSetWindowAttributes; typedef struct { int x, y; int width, height; int border_width; int depth; Visual *visual; Window root; int c_class; int bit_gravity; int win_gravity; int backing_store; unsigned long backing_planes; unsigned long backing_pixel; int save_under; Colormap colormap; int map_installed; int map_state; long all_event_masks; long your_event_mask; long do_not_propagate_mask; int override_redirect; Screen *screen; } XWindowAttributes; typedef struct { int family; int length; char *address; } XHostAddress; typedef struct { int typelength; int valuelength; char *type; char *value; } XServerInterpretedAddress; typedef struct _XImage { int width, height; int xoffset; int format; char *data; int byte_order; int bitmap_unit; int bitmap_bit_order; int bitmap_pad; int depth; int bytes_per_line; int bits_per_pixel; unsigned long red_mask; unsigned long green_mask; unsigned long blue_mask; XPointer obdata; struct funcs { struct _XImage *(*create_image)( struct _XDisplay* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); int (*destroy_image) (struct _XImage *); unsigned long (*get_pixel) (struct _XImage *, int, int); int (*put_pixel) (struct _XImage *, int, int, unsigned long); struct _XImage *(*sub_image)(struct _XImage *, int, int, unsigned int, unsigned int); int (*add_pixel) (struct _XImage *, long); } f; } XImage; typedef struct { int x, y; int width, height; int border_width; Window sibling; int stack_mode; } XWindowChanges; typedef struct { unsigned long pixel; unsigned short red, green, blue; char flags; char pad; } XColor; typedef struct { short x1, y1, x2, y2; } XSegment; typedef struct { short x, y; } XPoint; typedef struct { short x, y; unsigned short width, height; } XRectangle; typedef struct { short x, y; unsigned short width, height; short angle1, angle2; } XArc; typedef struct { int key_click_percent; int bell_percent; int bell_pitch; int bell_duration; int led; int led_mode; int key; int auto_repeat_mode; } XKeyboardControl; typedef struct { int key_click_percent; int bell_percent; unsigned int bell_pitch, bell_duration; unsigned long led_mask; int global_auto_repeat; char auto_repeats[32]; } XKeyboardState; typedef struct { Time time; short x, y; } XTimeCoord; typedef struct { int max_keypermod; KeyCode *modifiermap; } XModifierKeymap; typedef struct _XDisplay Display; struct _XPrivate; struct _XrmHashBucketRec; typedef struct { XExtData *ext_data; struct _XPrivate *private1; int fd; int private2; int proto_major_version; int proto_minor_version; char *vendor; XID private3; XID private4; XID private5; int private6; XID (*resource_alloc)( struct _XDisplay* ); int byte_order; int bitmap_unit; int bitmap_pad; int bitmap_bit_order; int nformats; ScreenFormat *pixmap_format; int private8; int release; struct _XPrivate *private9, *private10; int qlen; unsigned long last_request_read; unsigned long request; XPointer private11; XPointer private12; XPointer private13; XPointer private14; unsigned max_request_size; struct _XrmHashBucketRec *db; int (*private15)( struct _XDisplay* ); char *display_name; int default_screen; int nscreens; Screen *screens; unsigned long motion_buffer; unsigned long private16; int min_keycode; int max_keycode; XPointer private17; XPointer private18; int private19; char *xdefaults; } *_XPrivDisplay; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int keycode; int same_screen; } XKeyEvent; typedef XKeyEvent XKeyPressedEvent; typedef XKeyEvent XKeyReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; unsigned int button; int same_screen; } XButtonEvent; typedef XButtonEvent XButtonPressedEvent; typedef XButtonEvent XButtonReleasedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; unsigned int state; char is_hint; int same_screen; } XMotionEvent; typedef XMotionEvent XPointerMovedEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Window root; Window subwindow; Time time; int x, y; int x_root, y_root; int mode; int detail; int same_screen; int focus; unsigned int state; } XCrossingEvent; typedef XCrossingEvent XEnterWindowEvent; typedef XCrossingEvent XLeaveWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int mode; int detail; } XFocusChangeEvent; typedef XFocusChangeEvent XFocusInEvent; typedef XFocusChangeEvent XFocusOutEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; char key_vector[32]; } XKeymapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int x, y; int width, height; int count; } XExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int x, y; int width, height; int count; int major_code; int minor_code; } XGraphicsExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Drawable drawable; int major_code; int minor_code; } XNoExposeEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int state; } XVisibilityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; int override_redirect; } XCreateWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; } XDestroyWindowEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int from_configure; } XUnmapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int override_redirect; } XMapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; } XMapRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; Window parent; int x, y; int override_redirect; } XReparentEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; int width, height; int border_width; Window above; int override_redirect; } XConfigureEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int x, y; } XGravityEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int width, height; } XResizeRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int x, y; int width, height; int border_width; Window above; int detail; unsigned long value_mask; } XConfigureRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window event; Window window; int place; } XCirculateEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window parent; Window window; int place; } XCirculateRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom atom; Time time; int state; } XPropertyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom selection; Time time; } XSelectionClearEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window owner; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionRequestEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window requestor; Atom selection; Atom target; Atom property; Time time; } XSelectionEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Colormap colormap; int c_new; int state; } XColormapEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; Atom message_type; int format; union { char b[20]; short s[10]; long l[5]; } data; } XClientMessageEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; int request; int first_keycode; int count; } XMappingEvent; typedef struct { int type; Display *display; XID resourceid; unsigned long serial; unsigned char error_code; unsigned char request_code; unsigned char minor_code; } XErrorEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; Window window; } XAnyEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; } XGenericEvent; typedef struct { int type; unsigned long serial; int send_event; Display *display; int extension; int evtype; unsigned int cookie; void *data; } XGenericEventCookie; typedef union _XEvent { int type; XAnyEvent xany; XKeyEvent xkey; XButtonEvent xbutton; XMotionEvent xmotion; XCrossingEvent xcrossing; XFocusChangeEvent xfocus; XExposeEvent xexpose; XGraphicsExposeEvent xgraphicsexpose; XNoExposeEvent xnoexpose; XVisibilityEvent xvisibility; XCreateWindowEvent xcreatewindow; XDestroyWindowEvent xdestroywindow; XUnmapEvent xunmap; XMapEvent xmap; XMapRequestEvent xmaprequest; XReparentEvent xreparent; XConfigureEvent xconfigure; XGravityEvent xgravity; XResizeRequestEvent xresizerequest; XConfigureRequestEvent xconfigurerequest; XCirculateEvent xcirculate; XCirculateRequestEvent xcirculaterequest; XPropertyEvent xproperty; XSelectionClearEvent xselectionclear; XSelectionRequestEvent xselectionrequest; XSelectionEvent xselection; XColormapEvent xcolormap; XClientMessageEvent xclient; XMappingEvent xmapping; XErrorEvent xerror; XKeymapEvent xkeymap; XGenericEvent xgeneric; XGenericEventCookie xcookie; long pad[24]; } XEvent; typedef struct { short lbearing; short rbearing; short width; short ascent; short descent; unsigned short attributes; } XCharStruct; typedef struct { Atom name; unsigned long card32; } XFontProp; typedef struct { XExtData *ext_data; Font fid; unsigned direction; unsigned min_char_or_byte2; unsigned max_char_or_byte2; unsigned min_byte1; unsigned max_byte1; int all_chars_exist; unsigned default_char; int n_properties; XFontProp *properties; XCharStruct min_bounds; XCharStruct max_bounds; XCharStruct *per_char; int ascent; int descent; } XFontStruct; typedef struct { char *chars; int nchars; int delta; Font font; } XTextItem; typedef struct { unsigned char byte1; unsigned char byte2; } XChar2b; typedef struct { XChar2b *chars; int nchars; int delta; Font font; } XTextItem16; typedef union { Display *display; GC gc; Visual *visual; Screen *screen; ScreenFormat *pixmap_format; XFontStruct *font; } XEDataObject; typedef struct { XRectangle max_ink_extent; XRectangle max_logical_extent; } XFontSetExtents; typedef struct _XOM *XOM; typedef struct _XOC *XOC, *XFontSet; typedef struct { char *chars; int nchars; int delta; XFontSet font_set; } XmbTextItem; typedef struct { wchar_t *chars; int nchars; int delta; XFontSet font_set; } XwcTextItem; # 1128 "/usr/include/X11/Xlib.h" 3 typedef struct { int charset_count; char **charset_list; } XOMCharSetList; typedef enum { XOMOrientation_LTR_TTB, XOMOrientation_RTL_TTB, XOMOrientation_TTB_LTR, XOMOrientation_TTB_RTL, XOMOrientation_Context } XOrientation; typedef struct { int num_orientation; XOrientation *orientation; } XOMOrientation; typedef struct { int num_font; XFontStruct **font_struct_list; char **font_name_list; } XOMFontInfo; typedef struct _XIM *XIM; typedef struct _XIC *XIC; typedef void (*XIMProc)( XIM, XPointer, XPointer ); typedef int (*XICProc)( XIC, XPointer, XPointer ); typedef void (*XIDProc)( Display*, XPointer, XPointer ); typedef unsigned long XIMStyle; typedef struct { unsigned short count_styles; XIMStyle *supported_styles; } XIMStyles; # 1190 "/usr/include/X11/Xlib.h" 3 # 1222 "/usr/include/X11/Xlib.h" 3 # 1234 "/usr/include/X11/Xlib.h" 3 typedef void *XVaNestedList; typedef struct { XPointer client_data; XIMProc callback; } XIMCallback; typedef struct { XPointer client_data; XICProc callback; } XICCallback; typedef unsigned long XIMFeedback; # 1264 "/usr/include/X11/Xlib.h" 3 typedef struct _XIMText { unsigned short length; XIMFeedback *feedback; int encoding_is_wchar; union { char *multi_byte; wchar_t *wide_char; } string; } XIMText; typedef unsigned long XIMPreeditState; typedef struct _XIMPreeditStateNotifyCallbackStruct { XIMPreeditState state; } XIMPreeditStateNotifyCallbackStruct; typedef unsigned long XIMResetState; typedef unsigned long XIMStringConversionFeedback; # 1298 "/usr/include/X11/Xlib.h" 3 typedef struct _XIMStringConversionText { unsigned short length; XIMStringConversionFeedback *feedback; int encoding_is_wchar; union { char *mbs; wchar_t *wcs; } string; } XIMStringConversionText; typedef unsigned short XIMStringConversionPosition; typedef unsigned short XIMStringConversionType; typedef unsigned short XIMStringConversionOperation; typedef enum { XIMForwardChar, XIMBackwardChar, XIMForwardWord, XIMBackwardWord, XIMCaretUp, XIMCaretDown, XIMNextLine, XIMPreviousLine, XIMLineStart, XIMLineEnd, XIMAbsolutePosition, XIMDontChange } XIMCaretDirection; typedef struct _XIMStringConversionCallbackStruct { XIMStringConversionPosition position; XIMCaretDirection direction; XIMStringConversionOperation operation; unsigned short factor; XIMStringConversionText *text; } XIMStringConversionCallbackStruct; typedef struct _XIMPreeditDrawCallbackStruct { int caret; int chg_first; int chg_length; XIMText *text; } XIMPreeditDrawCallbackStruct; typedef enum { XIMIsInvisible, XIMIsPrimary, XIMIsSecondary } XIMCaretStyle; typedef struct _XIMPreeditCaretCallbackStruct { int position; XIMCaretDirection direction; XIMCaretStyle style; } XIMPreeditCaretCallbackStruct; typedef enum { XIMTextType, XIMBitmapType } XIMStatusDataType; typedef struct _XIMStatusDrawCallbackStruct { XIMStatusDataType type; union { XIMText *text; Pixmap bitmap; } data; } XIMStatusDrawCallbackStruct; typedef struct _XIMHotKeyTrigger { KeySym keysym; int modifier; int modifier_mask; } XIMHotKeyTrigger; typedef struct _XIMHotKeyTriggers { int num_hot_key; XIMHotKeyTrigger *key; } XIMHotKeyTriggers; typedef unsigned long XIMHotKeyState; typedef struct { unsigned short count_values; char **supported_values; } XIMValuesList; extern "C" { extern int _Xdebug; extern XFontStruct *XLoadQueryFont( Display* , const char* ); extern XFontStruct *XQueryFont( Display* , XID ); extern XTimeCoord *XGetMotionEvents( Display* , Window , Time , Time , int* ); extern XModifierKeymap *XDeleteModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XGetModifierMapping( Display* ); extern XModifierKeymap *XInsertModifiermapEntry( XModifierKeymap* , KeyCode , int ); extern XModifierKeymap *XNewModifiermap( int ); extern XImage *XCreateImage( Display* , Visual* , unsigned int , int , int , char* , unsigned int , unsigned int , int , int ); extern int XInitImage( XImage* ); extern XImage *XGetImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int ); extern XImage *XGetSubImage( Display* , Drawable , int , int , unsigned int , unsigned int , unsigned long , int , XImage* , int , int ); extern Display *XOpenDisplay( const char* ); extern void XrmInitialize( void ); extern char *XFetchBytes( Display* , int* ); extern char *XFetchBuffer( Display* , int* , int ); extern char *XGetAtomName( Display* , Atom ); extern int XGetAtomNames( Display* , Atom* , int , char** ); extern char *XGetDefault( Display* , const char* , const char* ); extern char *XDisplayName( const char* ); extern char *XKeysymToString( KeySym ); extern int (*XSynchronize( Display* , int ))( Display* ); extern int (*XSetAfterFunction( Display* , int (*) ( Display* ) ))( Display* ); extern Atom XInternAtom( Display* , const char* , int ); extern int XInternAtoms( Display* , char** , int , int , Atom* ); extern Colormap XCopyColormapAndFree( Display* , Colormap ); extern Colormap XCreateColormap( Display* , Window , Visual* , int ); extern Cursor XCreatePixmapCursor( Display* , Pixmap , Pixmap , XColor* , XColor* , unsigned int , unsigned int ); extern Cursor XCreateGlyphCursor( Display* , Font , Font , unsigned int , unsigned int , XColor const * , XColor const * ); extern Cursor XCreateFontCursor( Display* , unsigned int ); extern Font XLoadFont( Display* , const char* ); extern GC XCreateGC( Display* , Drawable , unsigned long , XGCValues* ); extern GContext XGContextFromGC( GC ); extern void XFlushGC( Display* , GC ); extern Pixmap XCreatePixmap( Display* , Drawable , unsigned int , unsigned int , unsigned int ); extern Pixmap XCreateBitmapFromData( Display* , Drawable , const char* , unsigned int , unsigned int ); extern Pixmap XCreatePixmapFromBitmapData( Display* , Drawable , char* , unsigned int , unsigned int , unsigned long , unsigned long , unsigned int ); extern Window XCreateSimpleWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , unsigned long , unsigned long ); extern Window XGetSelectionOwner( Display* , Atom ); extern Window XCreateWindow( Display* , Window , int , int , unsigned int , unsigned int , unsigned int , int , unsigned int , Visual* , unsigned long , XSetWindowAttributes* ); extern Colormap *XListInstalledColormaps( Display* , Window , int* ); extern char **XListFonts( Display* , const char* , int , int* ); extern char **XListFontsWithInfo( Display* , const char* , int , int* , XFontStruct** ); extern char **XGetFontPath( Display* , int* ); extern char **XListExtensions( Display* , int* ); extern Atom *XListProperties( Display* , Window , int* ); extern XHostAddress *XListHosts( Display* , int* , int* ); __attribute__((deprecated)) extern KeySym XKeycodeToKeysym( Display* , KeyCode , int ); extern KeySym XLookupKeysym( XKeyEvent* , int ); extern KeySym *XGetKeyboardMapping( Display* , KeyCode , int , int* ); extern KeySym XStringToKeysym( const char* ); extern long XMaxRequestSize( Display* ); extern long XExtendedMaxRequestSize( Display* ); extern char *XResourceManagerString( Display* ); extern char *XScreenResourceString( Screen* ); extern unsigned long XDisplayMotionBufferSize( Display* ); extern VisualID XVisualIDFromVisual( Visual* ); extern int XInitThreads( void ); extern void XLockDisplay( Display* ); extern void XUnlockDisplay( Display* ); extern XExtCodes *XInitExtension( Display* , const char* ); extern XExtCodes *XAddExtension( Display* ); extern XExtData *XFindOnExtensionList( XExtData** , int ); extern XExtData **XEHeadOfExtensionList( XEDataObject ); extern Window XRootWindow( Display* , int ); extern Window XDefaultRootWindow( Display* ); extern Window XRootWindowOfScreen( Screen* ); extern Visual *XDefaultVisual( Display* , int ); extern Visual *XDefaultVisualOfScreen( Screen* ); extern GC XDefaultGC( Display* , int ); extern GC XDefaultGCOfScreen( Screen* ); extern unsigned long XBlackPixel( Display* , int ); extern unsigned long XWhitePixel( Display* , int ); extern unsigned long XAllPlanes( void ); extern unsigned long XBlackPixelOfScreen( Screen* ); extern unsigned long XWhitePixelOfScreen( Screen* ); extern unsigned long XNextRequest( Display* ); extern unsigned long XLastKnownRequestProcessed( Display* ); extern char *XServerVendor( Display* ); extern char *XDisplayString( Display* ); extern Colormap XDefaultColormap( Display* , int ); extern Colormap XDefaultColormapOfScreen( Screen* ); extern Display *XDisplayOfScreen( Screen* ); extern Screen *XScreenOfDisplay( Display* , int ); extern Screen *XDefaultScreenOfDisplay( Display* ); extern long XEventMaskOfScreen( Screen* ); extern int XScreenNumberOfScreen( Screen* ); typedef int (*XErrorHandler) ( Display* , XErrorEvent* ); extern XErrorHandler XSetErrorHandler ( XErrorHandler ); typedef int (*XIOErrorHandler) ( Display* ); extern XIOErrorHandler XSetIOErrorHandler ( XIOErrorHandler ); extern XPixmapFormatValues *XListPixmapFormats( Display* , int* ); extern int *XListDepths( Display* , int , int* ); extern int XReconfigureWMWindow( Display* , Window , int , unsigned int , XWindowChanges* ); extern int XGetWMProtocols( Display* , Window , Atom** , int* ); extern int XSetWMProtocols( Display* , Window , Atom* , int ); extern int XIconifyWindow( Display* , Window , int ); extern int XWithdrawWindow( Display* , Window , int ); extern int XGetCommand( Display* , Window , char*** , int* ); extern int XGetWMColormapWindows( Display* , Window , Window** , int* ); extern int XSetWMColormapWindows( Display* , Window , Window* , int ); extern void XFreeStringList( char** ); extern int XSetTransientForHint( Display* , Window , Window ); extern int XActivateScreenSaver( Display* ); extern int XAddHost( Display* , XHostAddress* ); extern int XAddHosts( Display* , XHostAddress* , int ); extern int XAddToExtensionList( struct _XExtData** , XExtData* ); extern int XAddToSaveSet( Display* , Window ); extern int XAllocColor( Display* , Colormap , XColor* ); extern int XAllocColorCells( Display* , Colormap , int , unsigned long* , unsigned int , unsigned long* , unsigned int ); extern int XAllocColorPlanes( Display* , Colormap , int , unsigned long* , int , int , int , int , unsigned long* , unsigned long* , unsigned long* ); extern int XAllocNamedColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XAllowEvents( Display* , int , Time ); extern int XAutoRepeatOff( Display* ); extern int XAutoRepeatOn( Display* ); extern int XBell( Display* , int ); extern int XBitmapBitOrder( Display* ); extern int XBitmapPad( Display* ); extern int XBitmapUnit( Display* ); extern int XCellsOfScreen( Screen* ); extern int XChangeActivePointerGrab( Display* , unsigned int , Cursor , Time ); extern int XChangeGC( Display* , GC , unsigned long , XGCValues* ); extern int XChangeKeyboardControl( Display* , unsigned long , XKeyboardControl* ); extern int XChangeKeyboardMapping( Display* , int , int , KeySym* , int ); extern int XChangePointerControl( Display* , int , int , int , int , int ); extern int XChangeProperty( Display* , Window , Atom , Atom , int , int , const unsigned char* , int ); extern int XChangeSaveSet( Display* , Window , int ); extern int XChangeWindowAttributes( Display* , Window , unsigned long , XSetWindowAttributes* ); extern int XCheckIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XCheckMaskEvent( Display* , long , XEvent* ); extern int XCheckTypedEvent( Display* , int , XEvent* ); extern int XCheckTypedWindowEvent( Display* , Window , int , XEvent* ); extern int XCheckWindowEvent( Display* , Window , long , XEvent* ); extern int XCirculateSubwindows( Display* , Window , int ); extern int XCirculateSubwindowsDown( Display* , Window ); extern int XCirculateSubwindowsUp( Display* , Window ); extern int XClearArea( Display* , Window , int , int , unsigned int , unsigned int , int ); extern int XClearWindow( Display* , Window ); extern int XCloseDisplay( Display* ); extern int XConfigureWindow( Display* , Window , unsigned int , XWindowChanges* ); extern int XConnectionNumber( Display* ); extern int XConvertSelection( Display* , Atom , Atom , Atom , Window , Time ); extern int XCopyArea( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XCopyGC( Display* , GC , unsigned long , GC ); extern int XCopyPlane( Display* , Drawable , Drawable , GC , int , int , unsigned int , unsigned int , int , int , unsigned long ); extern int XDefaultDepth( Display* , int ); extern int XDefaultDepthOfScreen( Screen* ); extern int XDefaultScreen( Display* ); extern int XDefineCursor( Display* , Window , Cursor ); extern int XDeleteProperty( Display* , Window , Atom ); extern int XDestroyWindow( Display* , Window ); extern int XDestroySubwindows( Display* , Window ); extern int XDoesBackingStore( Screen* ); extern int XDoesSaveUnders( Screen* ); extern int XDisableAccessControl( Display* ); extern int XDisplayCells( Display* , int ); extern int XDisplayHeight( Display* , int ); extern int XDisplayHeightMM( Display* , int ); extern int XDisplayKeycodes( Display* , int* , int* ); extern int XDisplayPlanes( Display* , int ); extern int XDisplayWidth( Display* , int ); extern int XDisplayWidthMM( Display* , int ); extern int XDrawArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XDrawArcs( Display* , Drawable , GC , XArc* , int ); extern int XDrawImageString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawImageString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawLine( Display* , Drawable , GC , int , int , int , int ); extern int XDrawLines( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawPoint( Display* , Drawable , GC , int , int ); extern int XDrawPoints( Display* , Drawable , GC , XPoint* , int , int ); extern int XDrawRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XDrawRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XDrawSegments( Display* , Drawable , GC , XSegment* , int ); extern int XDrawString( Display* , Drawable , GC , int , int , const char* , int ); extern int XDrawString16( Display* , Drawable , GC , int , int , const XChar2b* , int ); extern int XDrawText( Display* , Drawable , GC , int , int , XTextItem* , int ); extern int XDrawText16( Display* , Drawable , GC , int , int , XTextItem16* , int ); extern int XEnableAccessControl( Display* ); extern int XEventsQueued( Display* , int ); extern int XFetchName( Display* , Window , char** ); extern int XFillArc( Display* , Drawable , GC , int , int , unsigned int , unsigned int , int , int ); extern int XFillArcs( Display* , Drawable , GC , XArc* , int ); extern int XFillPolygon( Display* , Drawable , GC , XPoint* , int , int , int ); extern int XFillRectangle( Display* , Drawable , GC , int , int , unsigned int , unsigned int ); extern int XFillRectangles( Display* , Drawable , GC , XRectangle* , int ); extern int XFlush( Display* ); extern int XForceScreenSaver( Display* , int ); extern int XFree( void* ); extern int XFreeColormap( Display* , Colormap ); extern int XFreeColors( Display* , Colormap , unsigned long* , int , unsigned long ); extern int XFreeCursor( Display* , Cursor ); extern int XFreeExtensionList( char** ); extern int XFreeFont( Display* , XFontStruct* ); extern int XFreeFontInfo( char** , XFontStruct* , int ); extern int XFreeFontNames( char** ); extern int XFreeFontPath( char** ); extern int XFreeGC( Display* , GC ); extern int XFreeModifiermap( XModifierKeymap* ); extern int XFreePixmap( Display* , Pixmap ); extern int XGeometry( Display* , int , const char* , const char* , unsigned int , unsigned int , unsigned int , int , int , int* , int* , int* , int* ); extern int XGetErrorDatabaseText( Display* , const char* , const char* , const char* , char* , int ); extern int XGetErrorText( Display* , int , char* , int ); extern int XGetFontProperty( XFontStruct* , Atom , unsigned long* ); extern int XGetGCValues( Display* , GC , unsigned long , XGCValues* ); extern int XGetGeometry( Display* , Drawable , Window* , int* , int* , unsigned int* , unsigned int* , unsigned int* , unsigned int* ); extern int XGetIconName( Display* , Window , char** ); extern int XGetInputFocus( Display* , Window* , int* ); extern int XGetKeyboardControl( Display* , XKeyboardState* ); extern int XGetPointerControl( Display* , int* , int* , int* ); extern int XGetPointerMapping( Display* , unsigned char* , int ); extern int XGetScreenSaver( Display* , int* , int* , int* , int* ); extern int XGetTransientForHint( Display* , Window , Window* ); extern int XGetWindowProperty( Display* , Window , Atom , long , long , int , Atom , Atom* , int* , unsigned long* , unsigned long* , unsigned char** ); extern int XGetWindowAttributes( Display* , Window , XWindowAttributes* ); extern int XGrabButton( Display* , unsigned int , unsigned int , Window , int , unsigned int , int , int , Window , Cursor ); extern int XGrabKey( Display* , int , unsigned int , Window , int , int , int ); extern int XGrabKeyboard( Display* , Window , int , int , int , Time ); extern int XGrabPointer( Display* , Window , int , unsigned int , int , int , Window , Cursor , Time ); extern int XGrabServer( Display* ); extern int XHeightMMOfScreen( Screen* ); extern int XHeightOfScreen( Screen* ); extern int XIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XImageByteOrder( Display* ); extern int XInstallColormap( Display* , Colormap ); extern KeyCode XKeysymToKeycode( Display* , KeySym ); extern int XKillClient( Display* , XID ); extern int XLookupColor( Display* , Colormap , const char* , XColor* , XColor* ); extern int XLowerWindow( Display* , Window ); extern int XMapRaised( Display* , Window ); extern int XMapSubwindows( Display* , Window ); extern int XMapWindow( Display* , Window ); extern int XMaskEvent( Display* , long , XEvent* ); extern int XMaxCmapsOfScreen( Screen* ); extern int XMinCmapsOfScreen( Screen* ); extern int XMoveResizeWindow( Display* , Window , int , int , unsigned int , unsigned int ); extern int XMoveWindow( Display* , Window , int , int ); extern int XNextEvent( Display* , XEvent* ); extern int XNoOp( Display* ); extern int XParseColor( Display* , Colormap , const char* , XColor* ); extern int XParseGeometry( const char* , int* , int* , unsigned int* , unsigned int* ); extern int XPeekEvent( Display* , XEvent* ); extern int XPeekIfEvent( Display* , XEvent* , int (*) ( Display* , XEvent* , XPointer ) , XPointer ); extern int XPending( Display* ); extern int XPlanesOfScreen( Screen* ); extern int XProtocolRevision( Display* ); extern int XProtocolVersion( Display* ); extern int XPutBackEvent( Display* , XEvent* ); extern int XPutImage( Display* , Drawable , GC , XImage* , int , int , int , int , unsigned int , unsigned int ); extern int XQLength( Display* ); extern int XQueryBestCursor( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestSize( Display* , int , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestStipple( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryBestTile( Display* , Drawable , unsigned int , unsigned int , unsigned int* , unsigned int* ); extern int XQueryColor( Display* , Colormap , XColor* ); extern int XQueryColors( Display* , Colormap , XColor* , int ); extern int XQueryExtension( Display* , const char* , int* , int* , int* ); extern int XQueryKeymap( Display* , char [32] ); extern int XQueryPointer( Display* , Window , Window* , Window* , int* , int* , int* , int* , unsigned int* ); extern int XQueryTextExtents( Display* , XID , const char* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTextExtents16( Display* , XID , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XQueryTree( Display* , Window , Window* , Window* , Window** , unsigned int* ); extern int XRaiseWindow( Display* , Window ); extern int XReadBitmapFile( Display* , Drawable , const char* , unsigned int* , unsigned int* , Pixmap* , int* , int* ); extern int XReadBitmapFileData( const char* , unsigned int* , unsigned int* , unsigned char** , int* , int* ); extern int XRebindKeysym( Display* , KeySym , KeySym* , int , const unsigned char* , int ); extern int XRecolorCursor( Display* , Cursor , XColor* , XColor* ); extern int XRefreshKeyboardMapping( XMappingEvent* ); extern int XRemoveFromSaveSet( Display* , Window ); extern int XRemoveHost( Display* , XHostAddress* ); extern int XRemoveHosts( Display* , XHostAddress* , int ); extern int XReparentWindow( Display* , Window , Window , int , int ); extern int XResetScreenSaver( Display* ); extern int XResizeWindow( Display* , Window , unsigned int , unsigned int ); extern int XRestackWindows( Display* , Window* , int ); extern int XRotateBuffers( Display* , int ); extern int XRotateWindowProperties( Display* , Window , Atom* , int , int ); extern int XScreenCount( Display* ); extern int XSelectInput( Display* , Window , long ); extern int XSendEvent( Display* , Window , int , long , XEvent* ); extern int XSetAccessControl( Display* , int ); extern int XSetArcMode( Display* , GC , int ); extern int XSetBackground( Display* , GC , unsigned long ); extern int XSetClipMask( Display* , GC , Pixmap ); extern int XSetClipOrigin( Display* , GC , int , int ); extern int XSetClipRectangles( Display* , GC , int , int , XRectangle* , int , int ); extern int XSetCloseDownMode( Display* , int ); extern int XSetCommand( Display* , Window , char** , int ); extern int XSetDashes( Display* , GC , int , const char* , int ); extern int XSetFillRule( Display* , GC , int ); extern int XSetFillStyle( Display* , GC , int ); extern int XSetFont( Display* , GC , Font ); extern int XSetFontPath( Display* , char** , int ); extern int XSetForeground( Display* , GC , unsigned long ); extern int XSetFunction( Display* , GC , int ); extern int XSetGraphicsExposures( Display* , GC , int ); extern int XSetIconName( Display* , Window , const char* ); extern int XSetInputFocus( Display* , Window , int , Time ); extern int XSetLineAttributes( Display* , GC , unsigned int , int , int , int ); extern int XSetModifierMapping( Display* , XModifierKeymap* ); extern int XSetPlaneMask( Display* , GC , unsigned long ); extern int XSetPointerMapping( Display* , const unsigned char* , int ); extern int XSetScreenSaver( Display* , int , int , int , int ); extern int XSetSelectionOwner( Display* , Atom , Window , Time ); extern int XSetState( Display* , GC , unsigned long , unsigned long , int , unsigned long ); extern int XSetStipple( Display* , GC , Pixmap ); extern int XSetSubwindowMode( Display* , GC , int ); extern int XSetTSOrigin( Display* , GC , int , int ); extern int XSetTile( Display* , GC , Pixmap ); extern int XSetWindowBackground( Display* , Window , unsigned long ); extern int XSetWindowBackgroundPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorder( Display* , Window , unsigned long ); extern int XSetWindowBorderPixmap( Display* , Window , Pixmap ); extern int XSetWindowBorderWidth( Display* , Window , unsigned int ); extern int XSetWindowColormap( Display* , Window , Colormap ); extern int XStoreBuffer( Display* , const char* , int , int ); extern int XStoreBytes( Display* , const char* , int ); extern int XStoreColor( Display* , Colormap , XColor* ); extern int XStoreColors( Display* , Colormap , XColor* , int ); extern int XStoreName( Display* , Window , const char* ); extern int XStoreNamedColor( Display* , Colormap , const char* , unsigned long , int ); extern int XSync( Display* , int ); extern int XTextExtents( XFontStruct* , const char* , int , int* , int* , int* , XCharStruct* ); extern int XTextExtents16( XFontStruct* , const XChar2b* , int , int* , int* , int* , XCharStruct* ); extern int XTextWidth( XFontStruct* , const char* , int ); extern int XTextWidth16( XFontStruct* , const XChar2b* , int ); extern int XTranslateCoordinates( Display* , Window , Window , int , int , int* , int* , Window* ); extern int XUndefineCursor( Display* , Window ); extern int XUngrabButton( Display* , unsigned int , unsigned int , Window ); extern int XUngrabKey( Display* , int , unsigned int , Window ); extern int XUngrabKeyboard( Display* , Time ); extern int XUngrabPointer( Display* , Time ); extern int XUngrabServer( Display* ); extern int XUninstallColormap( Display* , Colormap ); extern int XUnloadFont( Display* , Font ); extern int XUnmapSubwindows( Display* , Window ); extern int XUnmapWindow( Display* , Window ); extern int XVendorRelease( Display* ); extern int XWarpPointer( Display* , Window , Window , int , int , unsigned int , unsigned int , int , int ); extern int XWidthMMOfScreen( Screen* ); extern int XWidthOfScreen( Screen* ); extern int XWindowEvent( Display* , Window , long , XEvent* ); extern int XWriteBitmapFile( Display* , const char* , Pixmap , unsigned int , unsigned int , int , int ); extern int XSupportsLocale (void); extern char *XSetLocaleModifiers( const char* ); extern XOM XOpenOM( Display* , struct _XrmHashBucketRec* , const char* , const char* ); extern int XCloseOM( XOM ); extern char *XSetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOMValues( XOM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfOM( XOM ); extern char *XLocaleOfOM( XOM ); extern XOC XCreateOC( XOM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyOC( XOC ); extern XOM XOMOfOC( XOC ); extern char *XSetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetOCValues( XOC , ... ) __attribute__ ((__sentinel__(0))); extern XFontSet XCreateFontSet( Display* , const char* , char*** , int* , char** ); extern void XFreeFontSet( Display* , XFontSet ); extern int XFontsOfFontSet( XFontSet , XFontStruct*** , char*** ); extern char *XBaseFontNameListOfFontSet( XFontSet ); extern char *XLocaleOfFontSet( XFontSet ); extern int XContextDependentDrawing( XFontSet ); extern int XDirectionalDependentDrawing( XFontSet ); extern int XContextualDrawing( XFontSet ); extern XFontSetExtents *XExtentsOfFontSet( XFontSet ); extern int XmbTextEscapement( XFontSet , const char* , int ); extern int XwcTextEscapement( XFontSet , const wchar_t* , int ); extern int Xutf8TextEscapement( XFontSet , const char* , int ); extern int XmbTextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XwcTextExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* ); extern int Xutf8TextExtents( XFontSet , const char* , int , XRectangle* , XRectangle* ); extern int XmbTextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int XwcTextPerCharExtents( XFontSet , const wchar_t* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern int Xutf8TextPerCharExtents( XFontSet , const char* , int , XRectangle* , XRectangle* , int , int* , XRectangle* , XRectangle* ); extern void XmbDrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XwcDrawText( Display* , Drawable , GC , int , int , XwcTextItem* , int ); extern void Xutf8DrawText( Display* , Drawable , GC , int , int , XmbTextItem* , int ); extern void XmbDrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XmbDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern void XwcDrawImageString( Display* , Drawable , XFontSet , GC , int , int , const wchar_t* , int ); extern void Xutf8DrawImageString( Display* , Drawable , XFontSet , GC , int , int , const char* , int ); extern XIM XOpenIM( Display* , struct _XrmHashBucketRec* , char* , char* ); extern int XCloseIM( XIM ); extern char *XGetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern char *XSetIMValues( XIM , ... ) __attribute__ ((__sentinel__(0))); extern Display *XDisplayOfIM( XIM ); extern char *XLocaleOfIM( XIM ); extern XIC XCreateIC( XIM , ... ) __attribute__ ((__sentinel__(0))); extern void XDestroyIC( XIC ); extern void XSetICFocus( XIC ); extern void XUnsetICFocus( XIC ); extern wchar_t *XwcResetIC( XIC ); extern char *XmbResetIC( XIC ); extern char *Xutf8ResetIC( XIC ); extern char *XSetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern char *XGetICValues( XIC , ... ) __attribute__ ((__sentinel__(0))); extern XIM XIMOfIC( XIC ); extern int XFilterEvent( XEvent* , Window ); extern int XmbLookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern int XwcLookupString( XIC , XKeyPressedEvent* , wchar_t* , int , KeySym* , int* ); extern int Xutf8LookupString( XIC , XKeyPressedEvent* , char* , int , KeySym* , int* ); extern XVaNestedList XVaCreateNestedList( int , ... ) __attribute__ ((__sentinel__(0))); extern int XRegisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); extern int XUnregisterIMInstantiateCallback( Display* , struct _XrmHashBucketRec* , char* , char* , XIDProc , XPointer ); typedef void (*XConnectionWatchProc)( Display* , XPointer , int , int , XPointer* ); extern int XInternalConnectionNumbers( Display* , int** , int* ); extern void XProcessInternalConnection( Display* , int ); extern int XAddConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XRemoveConnectionWatch( Display* , XConnectionWatchProc , XPointer ); extern void XSetAuthorization( char * , int , char * , int ); extern int _Xmbtowc( wchar_t * , char * , int ); extern int _Xwctomb( char * , wchar_t ); extern int XGetEventData( Display* , XGenericEventCookie* ); extern void XFreeEventData( Display* , XGenericEventCookie* ); } # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['X11/Xlib.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.X(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.X(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.afterimage(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.afterimage(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Triangle(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Triangle(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/petsc4py.py:103) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:103) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/mpi4py.py:70) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:70) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/Matlab.py:35) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PTScotch(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.hdf5(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/hdf5.py:45) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:45) ================================================================================== Checking for a functional hdf5 Checking for library in User specified root directory HDF5: ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Contents: ['lib', 'include', 'bin', 'share', 'installlogs'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [H5T_init] in library ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char H5T_init(); static void _check_H5T_init() { H5T_init(); } #ifdef __cplusplus } #endif int main() { _check_H5T_init();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Popping language Cxx Checking for headers User specified root directory HDF5: ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['hdf5.h'] in ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5pubconf.h" 1 # 701 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5pubconf.h" # 32 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" 1 # 142 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 164 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 177 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 188 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 199 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 210 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 221 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 232 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 243 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 254 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 269 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 280 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 291 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 302 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 313 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 324 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 335 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 346 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 357 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 368 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 379 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 390 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 405 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 417 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5version.h" # 35 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 38 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/usr/include/sys/types.h" 1 3 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 56 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 94 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 218 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 } # 41 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 1 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 1 3 # 120 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 1 "/usr/include/limits.h" 1 3 # 115 "/usr/include/limits.h" 3 # 142 "/usr/include/limits.h" 3 # 1 "/usr/include/bits/posix1_lim.h" 1 3 # 1 "/usr/include/bits/local_lim.h" 1 3 # 37 "/usr/include/bits/local_lim.h" 3 # 1 "/usr/include/linux/limits.h" 1 3 # 17 "/usr/include/linux/limits.h" 3 # 40 "/usr/include/bits/local_lim.h" 2 3 # 158 "/usr/include/bits/posix1_lim.h" 2 3 # 146 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/posix2_lim.h" 1 3 # 87 "/usr/include/bits/posix2_lim.h" 3 # 150 "/usr/include/limits.h" 2 3 # 1 "/usr/include/bits/xopen_lim.h" 1 3 # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 35 "/usr/include/bits/xopen_lim.h" 2 3 # 119 "/usr/include/bits/xopen_lim.h" 3 # 132 "/usr/include/bits/xopen_lim.h" 3 # 143 "/usr/include/bits/xopen_lim.h" 3 # 154 "/usr/include/limits.h" 2 3 # 123 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 116 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 8 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/syslimits.h" 2 3 # 12 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 2 3 # 38 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 55 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 69 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 102 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/limits.h" 3 # 16 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 2 3 # 34 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 77 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 112 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/limits.h" 3 # 44 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/usr/include/inttypes.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 # 47 "/usr/include/stdint.h" 3 typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 283 "/usr/include/stdint.h" 3 # 319 "/usr/include/stdint.h" 3 # 29 "/usr/include/inttypes.h" 2 3 # 43 "/usr/include/inttypes.h" 3 # 272 "/usr/include/inttypes.h" 3 extern "C" { typedef struct { long int quot; long int rem; } imaxdiv_t; # 295 "/usr/include/inttypes.h" 3 extern intmax_t imaxabs (intmax_t __n) throw () __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) throw () __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw (); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) throw (); extern intmax_t wcstoimax (__const wchar_t *__restrict __nptr, wchar_t **__restrict __endptr, int __base) throw (); extern uintmax_t wcstoumax (__const wchar_t *__restrict __nptr, wchar_t ** __restrict __endptr, int __base) throw (); # 441 "/usr/include/inttypes.h" 3 } # 56 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 59 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 extern "C" { # 28 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 35 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 44 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 60 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Datatype; # 101 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_char = ((MPI_Datatype)0x4c000101); static const MPI_Datatype mpich_mpi_signed_char = ((MPI_Datatype)0x4c000118); static const MPI_Datatype mpich_mpi_unsigned_char = ((MPI_Datatype)0x4c000102); static const MPI_Datatype mpich_mpi_wchar = ((MPI_Datatype)0x4c00040e); static const MPI_Datatype mpich_mpi_short = ((MPI_Datatype)0x4c000203); static const MPI_Datatype mpich_mpi_unsigned_short = ((MPI_Datatype)0x4c000204); static const MPI_Datatype mpich_mpi_int = ((MPI_Datatype)0x4c000405); static const MPI_Datatype mpich_mpi_unsigned = ((MPI_Datatype)0x4c000406); static const MPI_Datatype mpich_mpi_long = ((MPI_Datatype)0x4c000807); static const MPI_Datatype mpich_mpi_unsigned_long = ((MPI_Datatype)0x4c000808); static const MPI_Datatype mpich_mpi_float = ((MPI_Datatype)0x4c00040a); static const MPI_Datatype mpich_mpi_double = ((MPI_Datatype)0x4c00080b); static const MPI_Datatype mpich_mpi_long_double = ((MPI_Datatype)0x4c00100c); static const MPI_Datatype mpich_mpi_long_long_int = ((MPI_Datatype)0x4c000809); static const MPI_Datatype mpich_mpi_unsigned_long_long = ((MPI_Datatype)0x4c000819); # 137 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" struct mpich_struct_mpi_float_int { float f; int i; }; struct mpich_struct_mpi_double_int { double d; int i; }; struct mpich_struct_mpi_long_int { long l; int i; }; struct mpich_struct_mpi_short_int { short s; int i; }; struct mpich_struct_mpi_2int { int i1; int i2; }; struct mpich_struct_mpi_long_double_int { long double ld; int i; }; static const MPI_Datatype mpich_mpi_float_int = ((MPI_Datatype)0x8c000000); static const MPI_Datatype mpich_mpi_double_int = ((MPI_Datatype)0x8c000001); static const MPI_Datatype mpich_mpi_long_int = ((MPI_Datatype)0x8c000002); static const MPI_Datatype mpich_mpi_short_int = ((MPI_Datatype)0x8c000003); static const MPI_Datatype mpich_mpi_2int = ((MPI_Datatype)0x4c000816); static const MPI_Datatype mpich_mpi_long_double_int = ((MPI_Datatype)0x8c000004); # 160 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 174 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 187 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 197 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_int8_t = ((MPI_Datatype)0x4c000137); static const MPI_Datatype mpich_mpi_int16_t = ((MPI_Datatype)0x4c000238); static const MPI_Datatype mpich_mpi_int32_t = ((MPI_Datatype)0x4c000439); static const MPI_Datatype mpich_mpi_int64_t = ((MPI_Datatype)0x4c00083a); static const MPI_Datatype mpich_mpi_uint8_t = ((MPI_Datatype)0x4c00013b); static const MPI_Datatype mpich_mpi_uint16_t = ((MPI_Datatype)0x4c00023c); static const MPI_Datatype mpich_mpi_uint32_t = ((MPI_Datatype)0x4c00043d); static const MPI_Datatype mpich_mpi_uint64_t = ((MPI_Datatype)0x4c00083e); static const MPI_Datatype mpich_mpi_c_bool = ((MPI_Datatype)0x4c00013f); static const MPI_Datatype mpich_mpi_c_float_complex = ((MPI_Datatype)0x4c000840); static const MPI_Datatype mpich_mpi_c_double_complex = ((MPI_Datatype)0x4c001041); static const MPI_Datatype mpich_mpi_c_long_double_complex = ((MPI_Datatype)0x4c002042); typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef int MPI_File; typedef int MPI_Op; # 264 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 285 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 303 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_datatype_null = ((MPI_Datatype)0x0c000000); typedef enum MPIR_Win_flavor_e { MPIX_WIN_FLAVOR_CREATE = 1, MPIX_WIN_FLAVOR_ALLOCATE = 2, MPIX_WIN_FLAVOR_DYNAMIC = 3, MPIX_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model_e { MPIX_WIN_SEPARATE = 1, MPIX_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; # 400 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Request; typedef int MPIX_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPIX_COMBINER_HINDEXED_BLOCK = 11, MPI_COMBINER_STRUCT_INTEGER = 12, MPI_COMBINER_STRUCT = 13, MPI_COMBINER_SUBARRAY = 14, MPI_COMBINER_DARRAY = 15, MPI_COMBINER_F90_REAL = 16, MPI_COMBINER_F90_COMPLEX = 17, MPI_COMBINER_F90_INTEGER = 18, MPI_COMBINER_RESIZED = 19 }; typedef int MPI_Info; # 491 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; static const MPI_Datatype mpich_mpi_aint = ((MPI_Datatype)0x4c000843); typedef long long MPI_Offset; static const MPI_Datatype mpich_mpi_offset = ((MPI_Datatype)0x4c000844); typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum; typedef struct MPIR_T_enum * MPIX_T_enum; struct MPIR_T_cvar_handle; typedef struct MPIR_T_cvar_handle * MPIX_T_cvar_handle; struct MPIR_T_pvar_handle; typedef struct MPIR_T_pvar_handle * MPIX_T_pvar_handle; struct MPIR_T_pvar_session; typedef struct MPIR_T_pvar_session * MPIX_T_pvar_session; extern struct MPIR_T_pvar_handle * const MPIX_T_PVAR_ALL_HANDLES; enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPIX_T_VERBOSITY_USER_BASIC = 221, MPIX_T_VERBOSITY_USER_DETAIL, MPIX_T_VERBOSITY_USER_ALL, MPIX_T_VERBOSITY_TUNER_BASIC, MPIX_T_VERBOSITY_TUNER_DETAIL, MPIX_T_VERBOSITY_TUNER_ALL, MPIX_T_VERBOSITY_MPIDEV_BASIC, MPIX_T_VERBOSITY_MPIDEV_DETAIL, MPIX_T_VERBOSITY_MPIDEV_ALL }; enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPIX_T_BIND_NO_OBJECT = 9700, MPIX_T_BIND_MPI_COMM, MPIX_T_BIND_MPI_DATATYPE, MPIX_T_BIND_MPI_ERRHANDLER, MPIX_T_BIND_MPI_FILE, MPIX_T_BIND_MPI_GROUP, MPIX_T_BIND_MPI_OP, MPIX_T_BIND_MPI_REQUEST, MPIX_T_BIND_MPI_WIN, MPIX_T_BIND_MPI_MESSAGE, MPIX_T_BIND_MPI_INFO }; enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPIX_T_SCOPE_READONLY = 60439, MPIX_T_SCOPE_LOCAL, MPIX_T_SCOPE_GROUP, MPIX_T_SCOPE_GROUP_EQ, MPIX_T_SCOPE_ALL, MPIX_T_SCOPE_ALL_EQ }; enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIX_T_PVAR_CLASS_STATE = 240, MPIX_T_PVAR_CLASS_LEVEL, MPIX_T_PVAR_CLASS_SIZE, MPIX_T_PVAR_CLASS_PERCENTAGE, MPIX_T_PVAR_CLASS_HIGHWATERMARK, MPIX_T_PVAR_CLASS_LOWWATERMARK, MPIX_T_PVAR_CLASS_COUNTER, MPIX_T_PVAR_CLASS_AGGREGATE, MPIX_T_PVAR_CLASS_TIMER, MPIX_T_PVAR_CLASS_GENERIC }; # 646 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 666 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); # 707 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 744 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 761 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 770 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); int MPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Get_count( MPI_Status *, MPI_Datatype, int *); int MPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Buffer_attach( void*, int); int MPI_Buffer_detach( void*, int *); int MPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Wait(MPI_Request *, MPI_Status *); int MPI_Test(MPI_Request *, int *, MPI_Status *); int MPI_Request_free(MPI_Request *); int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Waitall(int, MPI_Request *, MPI_Status *); int MPI_Testall(int, MPI_Request *, int *, MPI_Status *); int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int MPI_Probe(int, int, MPI_Comm, MPI_Status *); int MPI_Cancel(MPI_Request *); int MPI_Test_cancelled( MPI_Status *, int *); int MPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Bsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Ssend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Rsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Start(MPI_Request *); int MPI_Startall(int, MPI_Request *); int MPI_Sendrecv( void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int MPI_Address( void*, MPI_Aint *); int MPI_Type_extent(MPI_Datatype, MPI_Aint *); int MPI_Type_size(MPI_Datatype, int *); int MPI_Type_lb(MPI_Datatype, MPI_Aint *); int MPI_Type_ub(MPI_Datatype, MPI_Aint *); int MPI_Type_commit(MPI_Datatype *); int MPI_Type_free(MPI_Datatype *); int MPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int MPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int MPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int MPI_Barrier(MPI_Comm ); int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int MPI_Op_create(MPI_User_function *, int, MPI_Op *); int MPI_Op_free( MPI_Op *); int MPI_Allreduce( void*, void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Group_size(MPI_Group, int *); int MPI_Group_rank(MPI_Group, int *); int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int MPI_Group_compare(MPI_Group, MPI_Group, int *); int MPI_Comm_group(MPI_Comm, MPI_Group *); int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_free(MPI_Group *); int MPI_Comm_size(MPI_Comm, int *); int MPI_Comm_rank(MPI_Comm, int *); int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int MPI_Comm_dup(MPI_Comm, MPI_Comm *); int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int MPI_Comm_free(MPI_Comm *); int MPI_Comm_test_inter(MPI_Comm, int *); int MPI_Comm_remote_size(MPI_Comm, int *); int MPI_Comm_remote_group(MPI_Comm, MPI_Group *); int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * ); int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int MPI_Keyval_free(int *); int MPI_Attr_put(MPI_Comm, int, void*); int MPI_Attr_get(MPI_Comm, int, void *, int *); int MPI_Attr_delete(MPI_Comm, int); int MPI_Topo_test(MPI_Comm, int *); int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Dims_create(int, int, int *); int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Graphdims_get(MPI_Comm, int *, int *); int MPI_Graph_get(MPI_Comm, int, int, int *, int *); int MPI_Cartdim_get(MPI_Comm, int *); int MPI_Cart_get(MPI_Comm, int, int *, int *, int *); int MPI_Cart_rank(MPI_Comm, int *, int *); int MPI_Cart_coords(MPI_Comm, int, int, int *); int MPI_Graph_neighbors_count(MPI_Comm, int, int *); int MPI_Graph_neighbors(MPI_Comm, int, int, int *); int MPI_Cart_shift(MPI_Comm, int, int, int *, int *); int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int MPI_Cart_map(MPI_Comm, int, int *, int *, int *); int MPI_Graph_map(MPI_Comm, int, int *, int *, int *); int MPI_Get_processor_name(char *, int *); int MPI_Get_version(int *, int *); int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int MPI_Errhandler_free(MPI_Errhandler *); int MPI_Error_string(int, char *, int *); int MPI_Error_class(int, int *); double MPI_Wtime(void); double MPI_Wtick(void); double PMPI_Wtime(void); double PMPI_Wtick(void); int MPI_Init(int *, char ***); int MPI_Finalize(void); int MPI_Initialized(int *); int MPI_Abort(MPI_Comm, int); int MPI_Pcontrol(const int, ...); int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * ); int MPI_Close_port( char *); int MPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_disconnect(MPI_Comm *); int MPI_Comm_get_parent(MPI_Comm *); int MPI_Comm_join(int, MPI_Comm *); int MPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int MPI_Lookup_name( char *, MPI_Info, char *); int MPI_Open_port(MPI_Info, char *); int MPI_Publish_name( char *, MPI_Info, char *); int MPI_Unpublish_name( char *, MPI_Info, char *); int MPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Win_complete(MPI_Win); int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int MPI_Win_fence(int, MPI_Win); int MPI_Win_free(MPI_Win *); int MPI_Win_get_group(MPI_Win, MPI_Group *); int MPI_Win_lock(int, int, int, MPI_Win); int MPI_Win_post(MPI_Group, int, MPI_Win); int MPI_Win_start(MPI_Group, int, MPI_Win); int MPI_Win_test(MPI_Win, int *); int MPI_Win_unlock(int, MPI_Win); int MPI_Win_wait(MPI_Win); int MPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPIX_Win_detach(MPI_Win win, const void *base); int MPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int MPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int MPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int MPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Win_lock_all(int assert, MPI_Win win); int MPIX_Win_unlock_all(MPI_Win win); int MPIX_Win_flush(int rank, MPI_Win win); int MPIX_Win_flush_all(MPI_Win win); int MPIX_Win_flush_local(int rank, MPI_Win win); int MPIX_Win_flush_local_all(MPI_Win win); int MPIX_Win_sync(MPI_Win win); int MPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int MPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Add_error_class(int *); int MPI_Add_error_code(int, int *); int MPI_Add_error_string(int, char *); int MPI_Comm_call_errhandler(MPI_Comm, int); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int MPI_Comm_delete_attr(MPI_Comm, int); int MPI_Comm_free_keyval(int *); int MPI_Comm_get_attr(MPI_Comm, int, void *, int *); int MPI_Comm_get_name(MPI_Comm, char *, int *); int MPI_Comm_set_attr(MPI_Comm, int, void *); int MPI_Comm_set_name(MPI_Comm, char *); int MPI_File_call_errhandler(MPI_File, int); int MPI_Grequest_complete(MPI_Request); int MPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int MPI_Init_thread(int *, char ***, int, int *); int MPI_Is_thread_main(int *); int MPI_Query_thread(int *); int MPI_Status_set_cancelled(MPI_Status *, int); int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int MPI_Type_delete_attr(MPI_Datatype, int); int MPI_Type_dup(MPI_Datatype, MPI_Datatype *); int MPI_Type_free_keyval(int *); int MPI_Type_get_attr(MPI_Datatype, int, void *, int *); int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int MPI_Type_get_name(MPI_Datatype, char *, int *); int MPI_Type_set_attr(MPI_Datatype, int, void *); int MPI_Type_set_name(MPI_Datatype, char *); int MPI_Type_match_size( int, int, MPI_Datatype *); int MPI_Win_call_errhandler(MPI_Win, int); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int MPI_Win_delete_attr(MPI_Win, int); int MPI_Win_free_keyval(int *); int MPI_Win_get_attr(MPI_Win, int, void *, int *); int MPI_Win_get_name(MPI_Win, char *, int *); int MPI_Win_set_attr(MPI_Win, int, void *); int MPI_Win_set_name(MPI_Win, char *); # 1113 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int MPI_File_set_errhandler(MPI_File, MPI_Errhandler); int MPI_Finalized(int *); int MPI_Free_mem(void *); int MPI_Get_address( void *, MPI_Aint *); int MPI_Info_create(MPI_Info *); int MPI_Info_delete(MPI_Info, char *); int MPI_Info_dup(MPI_Info, MPI_Info *); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info, char *, int, char *, int *); int MPI_Info_get_nkeys(MPI_Info, int *); int MPI_Info_get_nthkey(MPI_Info, int, char *); int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int MPI_Info_set(MPI_Info, char *, char *); int MPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int MPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int MPI_Request_get_status(MPI_Request, int *, MPI_Status *); int MPI_Status_c2f( MPI_Status *, MPI_Fint *); int MPI_Status_f2c( MPI_Fint *, MPI_Status *); int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int MPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int MPI_Type_create_f90_integer( int, MPI_Datatype * ); int MPI_Type_create_f90_real( int, int, MPI_Datatype * ); int MPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int MPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int MPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int MPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int MPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int MPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int MPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int MPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int MPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_T_init_thread(int required, int *provided); int MPIX_T_finalize(void); int MPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int MPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int MPIX_T_cvar_get_num(int *num_cvar); int MPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int MPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int MPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int MPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_pvar_get_num(int *num_pvar); int MPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int MPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int MPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int MPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int MPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int MPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_category_get_num(int *num_cat); int MPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int MPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int MPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int MPIX_T_category_get_categories(int cat_index, int len, int indices[]); int MPIX_T_category_changed(int *stamp); int PMPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Get_count( MPI_Status *, MPI_Datatype, int *); int PMPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Buffer_attach( void* buffer, int); int PMPI_Buffer_detach( void* buffer, int *); int PMPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPI_Test(MPI_Request *, int *, MPI_Status *); int PMPI_Request_free(MPI_Request *); int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Waitall(int, MPI_Request *, MPI_Status *); int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int PMPI_Probe(int, int, MPI_Comm, MPI_Status *); int PMPI_Cancel(MPI_Request *); int PMPI_Test_cancelled( MPI_Status *, int *); int PMPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Bsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ssend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Rsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Start(MPI_Request *); int PMPI_Startall(int, MPI_Request *); int PMPI_Sendrecv( void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int PMPI_Address( void*, MPI_Aint *); int PMPI_Type_extent(MPI_Datatype, MPI_Aint *); int PMPI_Type_size(MPI_Datatype, int *); int PMPI_Type_lb(MPI_Datatype, MPI_Aint *); int PMPI_Type_ub(MPI_Datatype, MPI_Aint *); int PMPI_Type_commit(MPI_Datatype *); int PMPI_Type_free(MPI_Datatype *); int PMPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int PMPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int PMPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int PMPI_Barrier(MPI_Comm ); int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm ); int PMPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int PMPI_Op_create(MPI_User_function *, int, MPI_Op *); int PMPI_Op_free( MPI_Op *); int PMPI_Allreduce( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Group_size(MPI_Group, int *); int PMPI_Group_rank(MPI_Group, int *); int PMPI_Group_translate_ranks(MPI_Group, int, int *, MPI_Group, int *); int PMPI_Group_compare(MPI_Group, MPI_Group, int *); int PMPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); int PMPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPI_Comm_group(MPI_Comm, MPI_Group *); int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_free(MPI_Group *); int PMPI_Comm_size(MPI_Comm, int *); int PMPI_Comm_rank(MPI_Comm, int *); int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int PMPI_Comm_dup(MPI_Comm, MPI_Comm *); int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int PMPI_Comm_free(MPI_Comm *); int PMPI_Comm_test_inter(MPI_Comm, int *); int PMPI_Comm_remote_size(MPI_Comm, int *); int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *); int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *); int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int PMPI_Keyval_free(int *); int PMPI_Attr_put(MPI_Comm, int, void*); int PMPI_Attr_get(MPI_Comm, int, void *, int *); int PMPI_Attr_delete(MPI_Comm, int); int PMPI_Topo_test(MPI_Comm, int *); int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Dims_create(int, int, int *); int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Graphdims_get(MPI_Comm, int *, int *); int PMPI_Graph_get(MPI_Comm, int, int, int *, int *); int PMPI_Cartdim_get(MPI_Comm, int *); int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *); int PMPI_Cart_rank(MPI_Comm, int *, int *); int PMPI_Cart_coords(MPI_Comm, int, int, int *); int PMPI_Graph_neighbors_count(MPI_Comm, int, int *); int PMPI_Graph_neighbors(MPI_Comm, int, int, int *); int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *); int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *); int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *); int PMPI_Get_processor_name(char *, int *); int PMPI_Get_version(int *, int *); int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int PMPI_Errhandler_free(MPI_Errhandler *); int PMPI_Error_string(int, char *, int *); int PMPI_Error_class(int, int *); int PMPI_Init(int *, char ***); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Pcontrol(const int, ...); int PMPI_Close_port( char *); int PMPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_disconnect(MPI_Comm *); int PMPI_Comm_get_parent(MPI_Comm *); int PMPI_Comm_join(int, MPI_Comm *); int PMPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int PMPI_Lookup_name( char *, MPI_Info, char *); int PMPI_Open_port(MPI_Info, char *); int PMPI_Publish_name( char *, MPI_Info, char *); int PMPI_Unpublish_name( char *, MPI_Info, char *); int PMPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Win_complete(MPI_Win); int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int PMPI_Win_fence(int, MPI_Win); int PMPI_Win_free(MPI_Win *); int PMPI_Win_get_group(MPI_Win, MPI_Group *); int PMPI_Win_lock(int, int, int, MPI_Win); int PMPI_Win_post(MPI_Group, int, MPI_Win); int PMPI_Win_start(MPI_Group, int, MPI_Win); int PMPI_Win_test(MPI_Win, int *); int PMPI_Win_unlock(int, MPI_Win); int PMPI_Win_wait(MPI_Win); int PMPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPIX_Win_detach(MPI_Win win, const void *base); int PMPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int PMPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int PMPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int PMPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Win_lock_all(int assert, MPI_Win win); int PMPIX_Win_unlock_all(MPI_Win win); int PMPIX_Win_flush(int rank, MPI_Win win); int PMPIX_Win_flush_all(MPI_Win win); int PMPIX_Win_flush_local(int rank, MPI_Win win); int PMPIX_Win_flush_local_all(MPI_Win win); int PMPIX_Win_sync(MPI_Win win); int PMPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int PMPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Add_error_class(int *); int PMPI_Add_error_code(int, int *); int PMPI_Add_error_string(int, char *); int PMPI_Comm_call_errhandler(MPI_Comm, int); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int PMPI_Comm_delete_attr(MPI_Comm, int); int PMPI_Comm_free_keyval(int *); int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); int PMPI_Comm_set_attr(MPI_Comm, int, void *); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_File_call_errhandler(MPI_File, int); int PMPI_Grequest_complete(MPI_Request); int PMPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int PMPI_Init_thread(int *, char ***, int, int *); int PMPI_Is_thread_main(int *); int PMPI_Query_thread(int *); int PMPI_Status_set_cancelled(MPI_Status *, int); int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int PMPI_Type_delete_attr(MPI_Datatype, int); int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *); int PMPI_Type_free_keyval(int *); int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *); int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int PMPI_Type_get_name(MPI_Datatype, char *, int *); int PMPI_Type_set_attr(MPI_Datatype, int, void *); int PMPI_Type_set_name(MPI_Datatype, char *); int PMPI_Type_match_size( int, int, MPI_Datatype *); int PMPI_Win_call_errhandler(MPI_Win, int); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int PMPI_Win_delete_attr(MPI_Win, int); int PMPI_Win_free_keyval(int *); int PMPI_Win_get_attr(MPI_Win, int, void *, int *); int PMPI_Win_get_name(MPI_Win, char *, int *); int PMPI_Win_set_attr(MPI_Win, int, void *); int PMPI_Win_set_name(MPI_Win, char *); int PMPI_Type_create_f90_integer( int, MPI_Datatype * ); int PMPI_Type_create_f90_real( int, int, MPI_Datatype * ); int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler); int PMPI_Finalized(int *); int PMPI_Free_mem(void *); int PMPI_Get_address( void *, MPI_Aint *); int PMPI_Info_create(MPI_Info *); int PMPI_Info_delete(MPI_Info, char *); int PMPI_Info_dup(MPI_Info, MPI_Info *); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info, char *, int, char *, int *); int PMPI_Info_get_nkeys(MPI_Info, int *); int PMPI_Info_get_nthkey(MPI_Info, int, char *); int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int PMPI_Info_set(MPI_Info, char *, char *); int PMPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int PMPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *); int PMPI_Status_c2f( MPI_Status *, MPI_Fint *); int PMPI_Status_f2c( MPI_Fint *, MPI_Status *); int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int PMPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int PMPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int PMPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int PMPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int PMPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int PMPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int PMPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int PMPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int PMPIX_T_init_thread(int required, int *provided); int PMPIX_T_finalize(void); int PMPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int PMPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int PMPIX_T_cvar_get_num(int *num_cvar); int PMPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int PMPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int PMPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int PMPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_pvar_get_num(int *num_pvar); int PMPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int PMPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int PMPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int PMPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int PMPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int PMPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_category_get_num(int *num_cat); int PMPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int PMPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int PMPIX_T_category_get_categories(int cat_index, int len, int indices[]); int PMPIX_T_category_changed(int *stamp); # 1690 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 1 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 # 14 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 2 extern "C" { # 33 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 40 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 80 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 108 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int MPI_File_close(MPI_File *); int MPI_File_delete( char *, MPI_Info); int MPI_File_set_size(MPI_File, MPI_Offset); int MPI_File_preallocate(MPI_File, MPI_Offset); int MPI_File_get_size(MPI_File, MPI_Offset *); int MPI_File_get_group(MPI_File, MPI_Group *); int MPI_File_get_amode(MPI_File, int *); int MPI_File_set_info(MPI_File, MPI_Info); int MPI_File_get_info(MPI_File, MPI_Info *); int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int MPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int MPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_seek(MPI_File, MPI_Offset, int); int MPI_File_get_position(MPI_File, MPI_Offset *); int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_seek_shared(MPI_File, MPI_Offset, int); int MPI_File_get_position_shared(MPI_File, MPI_Offset *); int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int MPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int MPI_File_set_atomicity(MPI_File, int); int MPI_File_get_atomicity(MPI_File, int *); int MPI_File_sync(MPI_File); # 258 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 271 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File MPI_File_f2c(MPI_Fint); MPI_Fint MPI_File_c2f(MPI_File); # 292 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 321 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete( char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 465 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 485 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 502 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" } # 1692 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 } # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 1 # 26 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 41 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 1 "/usr/include/stdio.h" 1 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 79 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 892 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 52 "/usr/include/_G_config.h" 3 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 74 "/usr/include/_G_config.h" 3 # 33 "/usr/include/libio.h" 2 3 # 49 "/usr/include/libio.h" 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 typedef __builtin_va_list __gnuc_va_list; # 128 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/include/libio.h" 2 3 # 73 "/usr/include/libio.h" 3 # 88 "/usr/include/libio.h" 3 # 104 "/usr/include/libio.h" 3 # 113 "/usr/include/libio.h" 3 # 139 "/usr/include/libio.h" 3 # 149 "/usr/include/libio.h" 3 # 168 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 270 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 __off64_t _offset; # 328 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 358 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 442 "/usr/include/libio.h" 3 # 456 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 489 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 546 "/usr/include/libio.h" 3 } # 76 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 87 "/usr/include/stdio.h" 3 # 101 "/usr/include/stdio.h" 3 typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 162 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) throw (); extern int rename (__const char *__old, __const char *__new) throw (); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) throw (); extern FILE *tmpfile (void) ; # 202 "/usr/include/stdio.h" 3 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; extern char *tempnam (__const char *__dir, __const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); extern int fcloseall (void); extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 extern FILE *fopen64 (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen64 (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, __const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, __const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, __const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) throw (); # 466 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 525 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; extern int fputs_unlocked (__const char *__restrict __s, FILE *__restrict __stream); extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 786 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, __const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern __const char *__const sys_errlist[]; extern int _sys_nerr; extern __const char *__const _sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, __const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 925 "/usr/include/stdio.h" 3 # 937 "/usr/include/stdio.h" 3 } # 55 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 2 enum MPIR_Dummy_seek_type { MPIR_DUMMY_SEEK_COMMA_VAL = -1 , MPIR_SEEK_SET = 0 , SEEK_SET = MPIR_SEEK_SET , MPIR_SEEK_CUR = 1 , SEEK_CUR = MPIR_SEEK_CUR , MPIR_SEEK_END = 2 , SEEK_END = MPIR_SEEK_END # 79 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" }; namespace MPI { # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" extern void MPIR_Call_world_errhand( int ); typedef MPI_Offset Offset; typedef MPI_Aint Aint; typedef MPI_Fint Fint; void MPIR_CXX_InitDatatypeNames( void ); class Comm; class Nullcomm; class Intercomm; class Intracomm; class Cartcomm; class Graphcomm; class File; extern int Detach_buffer( void *&v1 ) ; extern bool Is_initialized( void ) ; extern void Get_processor_name( char * v1, int &v2 ) ; extern void Get_error_string( int v1, char * v2, int &v3 ) ; extern void Compute_dims( int v1, int v2, int * v3 ) ; extern void Get_version( int &v1, int &v2 ) ; extern void Finalize( void ) ; extern void Pcontrol( const int v1, ... ) ; extern void Attach_buffer( void* v1, int v2 ) ; extern int Get_error_class( int v1 ) ; extern Intracomm COMM_WORLD; extern File FILE_NULL; class Exception { protected: int the_real_exception; public: inline Exception(int obj) : the_real_exception(obj) {} inline Exception(void) : the_real_exception(0) {} virtual ~Exception() {} Exception(const Exception &obj) : the_real_exception(obj.the_real_exception){} Exception& operator=(const Exception &obj) { the_real_exception = obj.the_real_exception; return *this; } bool operator== (const Exception &obj) { return (the_real_exception == obj.the_real_exception); } bool operator!= (const Exception &obj) { return (the_real_exception != obj.the_real_exception); } inline operator int*() { return &the_real_exception; } inline operator int() const { return the_real_exception; } Exception& operator=(const int& obj) { the_real_exception = obj; return *this; } protected: char the_error_message[512]; public: int Get_error_code(void) { return the_real_exception; } int Get_error_class(void) { return MPI::Get_error_class(the_real_exception); } const char *Get_error_string(void) { int len; MPI_Error_string(the_real_exception, the_error_message, &len); return the_error_message; } }; class Datatype { friend class Comm; friend class Status; friend class Intracomm; friend class Intercomm; friend class Win; friend class File; friend class Op; protected: MPI_Datatype the_real_datatype; public: inline Datatype(MPI_Datatype obj) : the_real_datatype(obj) {} inline Datatype(void) : the_real_datatype(((MPI_Datatype)0x0c000000)) {} virtual ~Datatype() {} Datatype(const Datatype &obj) : the_real_datatype(obj.the_real_datatype){} Datatype& operator=(const Datatype &obj) { the_real_datatype = obj.the_real_datatype; return *this; } bool operator== (const Datatype &obj) { return (the_real_datatype == obj.the_real_datatype); } bool operator!= (const Datatype &obj) { return (the_real_datatype != obj.the_real_datatype); } inline operator MPI_Datatype*() { return &the_real_datatype; } inline operator MPI_Datatype() const { return the_real_datatype; } Datatype& operator=(const MPI_Datatype& obj) { the_real_datatype = obj; return *this; } virtual void Commit( void ) { { int err = MPI_Type_commit( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Free( void ) { { int err = MPI_Type_free( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual Datatype Create_indexed( int v1, const int * v2, const int * v3 ) const { Datatype v5; { int err = MPI_Type_indexed( v1, (int *)v2, (int *)v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } virtual Datatype Create_contiguous( int v1 ) const { Datatype v3; { int err = MPI_Type_contiguous( v1, (MPI_Datatype) the_real_datatype, &(v3 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual Datatype Create_vector( int v1, int v2, int v3 ) const { Datatype v5; { int err = MPI_Type_vector( v1, v2, v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } static Datatype Create_struct( int v1, int v2[], MPI_Aint v3[], const Datatype v4[] ) { Datatype v5; MPI_Datatype *l4 = new MPI_Datatype[v1]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; return v2; } virtual int Get_rank( void ) const { int v2; { int err = MPI_Comm_rank( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Prequest Bsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Bsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Prequest Ssend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Ssend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Is_inter( void ) const { int v2; { int err = MPI_Comm_test_inter( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual Prequest Rsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Rsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Request Ibsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Ibsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Abort( int v2 ) const { { int err = MPI_Abort( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Comm_free( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Send_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Send_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5, Status & v7 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)&(v7 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10, Status & v12 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)&(v12 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7, Status & v9 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)&(v9 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_topology( void ) const { int v2; { int err = MPI_Topo_test( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Isend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Isend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Probe( int v1, int v2, Status & v4 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)&(v4 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Probe( int v1, int v2 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static int Compare( const Comm &v1, const Comm &v2 ) { int v3; { int err = MPI_Comm_compare( (MPI_Comm)(v1 . the_real_comm), (MPI_Comm)(v2 . the_real_comm), &v3 ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual int Get_size( void ) const { int v2; { int err = MPI_Comm_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Issend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Issend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Comm_set_errhandler( (MPI_Comm) the_real_comm, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Send( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Send( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Ssend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Ssend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Recv_init( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Recv_init( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Iprobe( int v1, int v2, Status & v5 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual bool Iprobe( int v1, int v2 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Bsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Bsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irecv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irecv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Comm_get_errhandler( (MPI_Comm) the_real_comm, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Rsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Rsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter_block( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter_block( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Gatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7, int v8 ) const { { int err = MPI_Gatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Disconnect( void ) { { int err = MPI_Comm_disconnect( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allreduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Allreduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Alltoallw( const void * v1, const int v2[], const int v3[], const Datatype v4[], void * v5, const int v6[], const int v7[], const Datatype v8[] ) const { MPI_Datatype *l4 = new MPI_Datatype[Get_size()]; MPI_Datatype *l8 = new MPI_Datatype[Get_size()]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; delete[] l8; } static Intercomm Join( const int v1 ) ; virtual void Alltoall( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Alltoall( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Comm_get_attr( (MPI_Comm) the_real_comm, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Barrier( void ) const { { int err = MPI_Barrier( (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Bcast( void* v1, int v2, const Datatype &v3, int v4 ) const { { int err = MPI_Bcast( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Comm_set_attr( (MPI_Comm) the_real_comm, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Comm_set_name( (MPI_Comm) the_real_comm, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } static Intercomm Get_parent( void ) ; virtual void Alltoallv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, const int * v6, const int * v7, const Datatype &v8 ) const { { int err = MPI_Alltoallv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, (int *)v6, (int *)v7, (MPI_Datatype)(v8 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter( const void* v1, void* v2, int * v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatter( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Scatter( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Gather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Gather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } static void Free_keyval( int &v1 ) { { int err = MPI_Comm_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Reduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5, int v6 ) const { { int err = MPI_Reduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), v6, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Allgather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Comm_delete_attr( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatterv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, int v6, const Datatype &v7, int v8 ) const { { int err = MPI_Scatterv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Comm_get_name( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7 ) const { { int err = MPI_Allgatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Comm &Clone(void) const = 0; typedef int Copy_attr_function(const Comm& oldcomm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Comm& comm, int comm_keyval, void* attribute_val, void* extra_state); typedef void Errhandler_function(Comm &, int *, ... ); typedef Errhandler_function Errhandler_fn; static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 0; return 0;} static int NULL_DELETE_FN( Comm &comm __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} static Errhandler Create_errhandler( Errhandler_function * ); }; class Nullcomm : public Comm { public: inline Nullcomm(MPI_Comm obj) : Comm(obj) {} inline Nullcomm(void) : Comm() {} virtual ~Nullcomm() {} Nullcomm(const Nullcomm &obj) : Comm(obj) {} Nullcomm& operator=(const Nullcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Nullcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } # 1525 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Nullcomm & Clone(void) const { Nullcomm *clone = new Nullcomm(); return *clone; }; }; class Intercomm : public Comm { friend class Intracomm; public: inline Intercomm(MPI_Comm obj) : Comm(obj) {} inline Intercomm(void) : Comm() {} virtual ~Intercomm() {} Intercomm(const Intercomm &obj) : Comm(obj) {} Intercomm& operator=(const Intercomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intercomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intracomm Merge( bool v2 ) const; virtual Group Get_remote_group( void ) const { Group v2; { int err = MPI_Comm_remote_group( (MPI_Comm) the_real_comm, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_remote_size( void ) const { int v2; { int err = MPI_Comm_remote_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } Intercomm Dup( void ) const { Intercomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Intercomm Split( int v2, int v3 ) const { Intercomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } # 1591 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intercomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intercomm *clone = new Intercomm(ncomm); return *clone; }; }; class Intracomm : public Comm { friend class Cartcomm; friend class Graphcomm; friend class Datatype; public: inline Intracomm(MPI_Comm obj) : Comm(obj) {} inline Intracomm(void) : Comm() {} virtual ~Intracomm() {} Intracomm(const Intracomm &obj) : Comm(obj) {} Intracomm& operator=(const Intracomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intracomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intercomm Create_intercomm( int v2, const Comm &v3, int v4, int v5 ) const { Intercomm v6; { int err = MPI_Intercomm_create( (MPI_Comm) the_real_comm, v2, (MPI_Comm)(v3 . the_real_comm), v4, v5, &(v6 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual Intracomm Split( int v2, int v3 ) const { Intracomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } virtual Graphcomm Create_graph( int v2, const int * v3, const int * v4, bool v5 ) const; virtual Cartcomm Create_cart( int v2, const int * v3, const bool v4[], bool v5 ) const; virtual Intracomm Create( const Group &v2 ) const { Intracomm v3; { int err = MPI_Comm_create( (MPI_Comm) the_real_comm, (MPI_Group)(v2 . the_real_group), &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Intracomm Dup( void ) const { Intracomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Scan( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Scan( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Exscan( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Exscan( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Intercomm Accept( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_accept( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Intercomm Connect( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_connect( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } # 1682 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intracomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intracomm *clone = new Intracomm(ncomm); return *clone; }; Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), (int *)0 ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root, int array_of_errcodes[]) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), array_of_errcodes ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root, int array_of_errcodes[]) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } }; class Grequest : public Request { public: inline Grequest(MPI_Request obj) : Request(obj) {} inline Grequest(void) : Request() {} virtual ~Grequest() {} Grequest(const Grequest &obj) : Request(obj) {} Grequest& operator=(const Grequest &obj) { the_real_request = obj.the_real_request; return *this; } bool operator== (const Grequest &obj) { return (the_real_request == obj.the_real_request); } bool operator!= (const Grequest &obj) { return (the_real_request != obj.the_real_request); } inline operator MPI_Request*() { return &the_real_request; } inline operator MPI_Request() const { return the_real_request; } Grequest& operator=(const MPI_Request& obj) { the_real_request = obj; return *this; } virtual void Complete( void ) { { int err = MPI_Grequest_complete( (MPI_Request) the_real_request ) ; if (err) MPIR_Call_world_errhand( err ); }; } typedef int Query_function( void *, Status & ); typedef int Free_function( void * ); typedef int Cancel_function( void *, bool ); Grequest Start( Query_function *query_fn, Free_function *free_fn, Cancel_function *cancel_fn, void *extra_state ); }; class Win { protected: MPI_Win the_real_win; public: inline Win(MPI_Win obj) : the_real_win(obj) {} inline Win(void) : the_real_win(((MPI_Win)0x20000000)) {} virtual ~Win() {} Win(const Win &obj) : the_real_win(obj.the_real_win){} Win& operator=(const Win &obj) { the_real_win = obj.the_real_win; return *this; } bool operator== (const Win &obj) { return (the_real_win == obj.the_real_win); } bool operator!= (const Win &obj) { return (the_real_win != obj.the_real_win); } inline operator MPI_Win*() { return &the_real_win; } inline operator MPI_Win() const { return the_real_win; } Win& operator=(const MPI_Win& obj) { the_real_win = obj; return *this; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_Win_get_group( (MPI_Win) the_real_win, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Fence( int v1 ) const { { int err = MPI_Win_fence( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Start( const Group &v1, int v2 ) const { { int err = MPI_Win_start( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Win_free( (MPI_Win *) &the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Put( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Put( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Wait( void ) const { { int err = MPI_Win_wait( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Test( void ) const { int v2; { int err = MPI_Win_test( (MPI_Win) the_real_win, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual void Get( void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Get( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Win_get_attr( (MPI_Win) the_real_win, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Win_set_attr( (MPI_Win) the_real_win, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Complete( void ) const { { int err = MPI_Win_complete( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Win_set_errhandler( (MPI_Win) the_real_win, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Win_set_name( (MPI_Win) the_real_win, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Accumulate( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7, const Op &v8 ) const { { int err = MPI_Accumulate( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Op)(v8 . the_real_op), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } static Win Create( const void * v1, Aint v2, int v3, const Info &v4, const Intracomm &v5 ) { Win v6; { int err = MPI_Win_create( (void *)v1, v2, v3, (MPI_Info)(v4 . the_real_info), (MPI_Comm)(v5 . the_real_comm), &(v6 . the_real_win) ); if (err) { (v5). Call_errhandler( err ); }}; return v6; } virtual void Call_errhandler( int v2 ) const; static void Free_keyval( int &v1 ) { { int err = MPI_Win_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Post( const Group &v1, int v2 ) const { { int err = MPI_Win_post( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Unlock( int v1 ) const { { int err = MPI_Win_unlock( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Win_delete_attr( (MPI_Win) the_real_win, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Lock( int v1, int v2, int v3 ) const { { int err = MPI_Win_lock( v1, v2, v3, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Win_get_errhandler( (MPI_Win) the_real_win, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Win_get_name( (MPI_Win) the_real_win, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } typedef void Errhandler_function(Win &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); typedef int Copy_attr_function(const Win& oldwin, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Win& win, int win_keyval, void* attribute_val, void* extra_state); static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 1; return 0;} static int NULL_DELETE_FN( Win &win __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} }; class File { protected: MPI_File the_real_file; public: inline File(MPI_File obj) : the_real_file(obj) {} inline File(void) : the_real_file(((MPI_File)0)) {} virtual ~File() {} File(const File &obj) : the_real_file(obj.the_real_file){} File& operator=(const File &obj) { the_real_file = obj.the_real_file; return *this; } bool operator== (const File &obj) { return (the_real_file == obj.the_real_file); } bool operator!= (const File &obj) { return (the_real_file != obj.the_real_file); } inline operator MPI_File*() { return &the_real_file; } inline operator MPI_File() const { return the_real_file; } File& operator=(const MPI_File& obj) { the_real_file = obj; return *this; } virtual Aint Get_type_extent( const Datatype &v2 ) const { MPI_Aint v3; { int err = MPI_File_get_type_extent( (MPI_File) the_real_file, (MPI_Datatype)(v2 . the_real_datatype), &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual void Read_ordered_end( void * v2, Status & v3 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered_end( void * v2 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Seek_shared( Offset v2, int v3 ) { { int err = MPI_File_seek_shared( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_shared( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Info Get_info( void ) const { Info v2; { int err = MPI_File_get_info( (MPI_File) the_real_file, &(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_ordered_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_info( const Info &v2 ) { { int err = MPI_File_set_info( (MPI_File) the_real_file, (MPI_Info)(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sync( void ) { { int err = MPI_File_sync( (MPI_File) the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_size( void ) const { MPI_Offset v2; { int err = MPI_File_get_size( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all_end( const void * v2 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static void Delete( const char * v1, const Info &v2 ) { { int err = MPI_File_delete( (char *)v1, (MPI_Info)(v2 . the_real_info) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; } virtual void Read_ordered_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iread_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Write_at_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_end( const void * v2 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_position_shared( void ) const { MPI_Offset v2; { int err = MPI_File_get_position_shared( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iwrite_at( (MPI_File) the_real_file, (MPI_Offset)v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Get_view( Offset & v2, Datatype &v3, Datatype &v4, char * v5 ) const { { int err = MPI_File_get_view( (MPI_File) the_real_file, &v2, (MPI_Datatype *)&(v3 . the_real_datatype), (MPI_Datatype *)&(v4 . the_real_datatype), v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Write_all_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_byte_offset( const Offset v2 ) const { MPI_Offset v3; { int err = MPI_File_get_byte_offset( (MPI_File) the_real_file, (MPI_Offset)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual Request Iread( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Read_at_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_end( void * v2 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_begin( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all_begin( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_File_get_errhandler( (MPI_File) the_real_file, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_amode( void ) const { int v2; { int err = MPI_File_get_amode( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Set_atomicity( bool v2 ) { int l2; l2 = (v2 == true) ? 1 : 0; { int err = MPI_File_set_atomicity( (MPI_File) the_real_file, l2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_File_get_group( (MPI_File) the_real_file, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Offset Get_position( void ) const { MPI_Offset v2; { int err = MPI_File_get_position( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } static File Open( const Intracomm &v1, const char * v2, int v3, const Info &v4 ) { File v5; { int err = MPI_File_open( (MPI_Comm)(v1 . the_real_comm), (char *)v2, v3, (MPI_Info)(v4 . the_real_info), &(v5 . the_real_file) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; return v5; } virtual void Seek( Offset v2, int v3 ) { { int err = MPI_File_seek( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_begin( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all_begin( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Preallocate( Offset v2 ) { { int err = MPI_File_preallocate( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Request Iwrite_shared( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_File_set_errhandler( (MPI_File) the_real_file, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_size( Offset v2 ) { { int err = MPI_File_set_size( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_view( Offset v2, const Datatype &v3, const Datatype v4, const char * v5, const Info &v6 ) { { int err = MPI_File_set_view( (MPI_File) the_real_file, v2, (MPI_Datatype)(v3 . the_real_datatype), (MPI_Datatype)v4, (char *)v5, (MPI_Info)(v6 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Close( void ) { { int err = MPI_File_close( (MPI_File *) &the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_atomicity( void ) const { int v2; { int err = MPI_File_get_atomicity( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } typedef void Errhandler_function(File &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); }; class Graphcomm : public Intracomm { public: inline Graphcomm(MPI_Comm obj) : Intracomm(obj) {} inline Graphcomm(void) : Intracomm() {} virtual ~Graphcomm() {} Graphcomm(const Graphcomm &obj) : Intracomm(obj) {} Graphcomm& operator=(const Graphcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Graphcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_dims( int * v2, int * v3 ) const { { int err = MPI_Graphdims_get( (MPI_Comm) the_real_comm, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_topo( int v2, int v3, int * v4, int * v5 ) const { { int err = MPI_Graph_get( (MPI_Comm) the_real_comm, v2, v3, v4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Map( int v2, const int * v3, const int * v4 ) const { int v5; { int err = MPI_Graph_map( (MPI_Comm) the_real_comm, v2, (int *)v3, (int *)v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Get_neighbors( int v2, int v3, int * v4 ) const { { int err = MPI_Graph_neighbors( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_neighbors_count( int v2 ) const { int v3; { int err = MPI_Graph_neighbors_count( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Graphcomm Dup( void ) const { Graphcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2360 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Graphcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Graphcomm *clone = new Graphcomm(ncomm); return *clone; }; }; class Cartcomm : public Intracomm { public: inline Cartcomm(MPI_Comm obj) : Intracomm(obj) {} inline Cartcomm(void) : Intracomm() {} virtual ~Cartcomm() {} Cartcomm(const Cartcomm &obj) : Intracomm(obj) {} Cartcomm& operator=(const Cartcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Cartcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_coords( int v2, int v3, int * v4 ) const { { int err = MPI_Cart_coords( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_cart_rank( const int * v2 ) const { int v3; { int err = MPI_Cart_rank( (MPI_Comm) the_real_comm, (int *)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual int Get_dim( void ) const { int v2; { int err = MPI_Cartdim_get( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_topo( int v2, int * v3, bool v4[], int * v5 ) const { int *l4 = new int[v2]; { int err = MPI_Cart_get( (MPI_Comm) the_real_comm, v2, v3, l4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; return v5; } virtual Cartcomm Sub( const bool v2[] ) const { Cartcomm v3; int *l2 = new int[10]; { int i2; for (i2=0;i2<10;i2++) { l2[i2] = v2[i2] == true ? 1 : 0; } } { int err = MPI_Cart_sub( (MPI_Comm) the_real_comm, l2, &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; delete[] l2; return v3; } virtual void Shift( int v2, int v3, int &v4, int &v5 ) const { { int err = MPI_Cart_shift( (MPI_Comm) the_real_comm, v2, v3, &v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; } Cartcomm Dup( void ) const { Cartcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2475 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Cartcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Cartcomm *clone = new Cartcomm(ncomm); return *clone; }; }; extern int Add_error_class( void ) ; extern void* Alloc_mem( Aint v1, const Info &v2 ) ; extern void Lookup_name( const char * v1, const Info &v2, char * v3 ) ; extern void Publish_name( const char * v1, const Info &v2, const char * v3 ) ; extern void Unpublish_name( const char * v1, const Info &v2, const char * v3 ) ; extern Aint Get_address( void * v1 ) ; extern void Add_error_string( int v1, const char * v2 ) ; extern int Query_thread( void ) ; extern void Close_port( const char * v1 ) ; extern int Add_error_code( int v1 ) ; extern void Free_mem( void * v1 ) ; extern void Open_port( const Info &v1, char * v2 ) ; extern bool Is_finalized( void ) ; extern bool Is_thread_main( void ) ; typedef int Datarep_extent_function( const Datatype&, Aint&, void *); typedef int Datarep_conversion_function( void *, Datatype &, int, void *, Offset, void * ); extern Datatype CHAR; extern Datatype UNSIGNED_CHAR; extern Datatype BYTE; extern Datatype SHORT; extern Datatype UNSIGNED_SHORT; extern Datatype INT; extern Datatype UNSIGNED; extern Datatype LONG; extern Datatype UNSIGNED_LONG; extern Datatype FLOAT; extern Datatype DOUBLE; extern Datatype LONG_DOUBLE; extern Datatype LONG_LONG_INT; extern Datatype LONG_LONG; extern Datatype PACKED; extern Datatype LB; extern Datatype UB; extern Datatype FLOAT_INT; extern Datatype DOUBLE_INT; extern Datatype LONG_INT; extern Datatype SHORT_INT; extern Datatype LONG_DOUBLE_INT; extern Datatype REAL4; extern Datatype REAL8; extern Datatype REAL16; extern Datatype COMPLEX8; extern Datatype COMPLEX16; extern Datatype COMPLEX32; extern Datatype INTEGER1; extern Datatype INTEGER2; extern Datatype INTEGER4; extern Datatype INTEGER8; extern Datatype INTEGER16; extern Datatype WCHAR; extern Datatype SIGNED_CHAR; extern Datatype UNSIGNED_LONG_LONG; extern Datatype TWOINT; extern Datatype BOOL; extern Datatype COMPLEX; extern Datatype DOUBLE_COMPLEX; extern Datatype LONG_DOUBLE_COMPLEX; extern Datatype DATATYPE_NULL; extern Datatype INTEGER; extern Datatype REAL; extern Datatype DOUBLE_PRECISION; extern Datatype F_COMPLEX; extern Datatype F_DOUBLE_COMPLEX; extern Datatype LOGICAL; extern Datatype CHARACTER; extern Datatype TWOREAL; extern Datatype TWODOUBLE_PRECISION; extern Datatype TWOINTEGER; extern const Op MAX; extern const Op MIN; extern const Op SUM; extern const Op PROD; extern const Op LAND; extern const Op BAND; extern const Op LOR; extern const Op BOR; extern const Op LXOR; extern const Op BXOR; extern const Op MINLOC; extern const Op MAXLOC; extern const Op REPLACE; extern const Op OP_NULL; extern Intracomm COMM_SELF; extern const Group GROUP_EMPTY; extern const Nullcomm COMM_NULL; extern const Group GROUP_NULL; extern const Request REQUEST_NULL; extern const Errhandler ERRHANDLER_NULL; extern const Errhandler ERRORS_RETURN; extern const Errhandler ERRORS_ARE_FATAL; extern const Errhandler ERRORS_THROW_EXCEPTIONS; extern const Info INFO_NULL; extern const Win WIN_NULL; extern const int BSEND_OVERHEAD; extern const int KEYVAL_INVALID; extern const int CART; extern const int GRAPH; extern const int IDENT; extern const int SIMILAR; extern const int CONGRUENT; extern const int UNEQUAL; extern const int PROC_NULL; extern const int ANY_TAG; extern const int ANY_SOURCE; extern const int ROOT; extern const int TAG_UB; extern const int IO; extern const int HOST; extern const int WTIME_IS_GLOBAL; extern const int UNIVERSE_SIZE; extern const int LASTUSEDCODE; extern const int APPNUM; extern const int MAX_PROCESSOR_NAME; extern const int MAX_ERROR_STRING; extern const int MAX_PORT_NAME; extern const int MAX_OBJECT_NAME; extern const int MAX_INFO_VAL; extern const int MAX_INFO_KEY; extern const int UNDEFINED; extern const int LOCK_EXCLUSIVE; extern const int LOCK_SHARED; extern const int WIN_BASE; extern const int WIN_DISP_UNIT; extern const int WIN_SIZE; extern const int SUCCESS; extern const int ERR_BUFFER; extern const int ERR_COUNT; extern const int ERR_TYPE; extern const int ERR_TAG; extern const int ERR_COMM; extern const int ERR_RANK; extern const int ERR_REQUEST; extern const int ERR_ROOT; extern const int ERR_GROUP; extern const int ERR_OP; extern const int ERR_TOPOLOGY; extern const int ERR_DIMS; extern const int ERR_ARG; extern const int ERR_UNKNOWN; extern const int ERR_TRUNCATE; extern const int ERR_OTHER; extern const int ERR_INTERN; extern const int ERR_PENDING; extern const int ERR_IN_STATUS; extern const int ERR_LASTCODE; extern const int ERR_FILE; extern const int ERR_ACCESS; extern const int ERR_AMODE; extern const int ERR_BAD_FILE; extern const int ERR_FILE_EXISTS; extern const int ERR_FILE_IN_USE; extern const int ERR_NO_SPACE; extern const int ERR_NO_SUCH_FILE; extern const int ERR_IO; extern const int ERR_READ_ONLY; extern const int ERR_CONVERSION; extern const int ERR_DUP_DATAREP; extern const int ERR_UNSUPPORTED_DATAREP; extern const int ERR_INFO; extern const int ERR_INFO_KEY; extern const int ERR_INFO_VALUE; extern const int ERR_INFO_NOKEY; extern const int ERR_NAME; extern const int ERR_NO_MEM; extern const int ERR_NOT_SAME; extern const int ERR_PORT; extern const int ERR_QUOTA; extern const int ERR_SERVICE; extern const int ERR_SPAWN; extern const int ERR_UNSUPPORTED_OPERATION; extern const int ERR_WIN; extern const int ERR_BASE; extern const int ERR_LOCKTYPE; extern const int ERR_KEYVAL; extern const int ERR_RMA_CONFLICT; extern const int ERR_RMA_SYNC; extern const int ERR_SIZE; extern const int ERR_DISP; extern const int ERR_ASSERT; extern const int TYPECLASS_REAL; extern const int TYPECLASS_INTEGER; extern const int TYPECLASS_COMPLEX; extern const int SEEK_SET; extern const int SEEK_END; extern const int SEEK_CUR; extern const int DISTRIBUTE_BLOCK; extern const int DISTRIBUTE_CYCLIC; extern const int DISTRIBUTE_DFLT_DARG; extern const int DISTRIBUTE_NONE; extern const int ORDER_C; extern const int ORDER_FORTRAN; extern const int MAX_DATAREP_STRING; extern const MPI_Offset DISPLACEMENT_CURRENT; extern const int MODE_APPEND; extern const int MODE_CREATE; extern const int MODE_DELETE_ON_CLOSE; extern const int MODE_EXCL; extern const int MODE_RDONLY; extern const int MODE_RDWR; extern const int MODE_SEQUENTIAL; extern const int MODE_UNIQUE_OPEN; extern const int MODE_WRONLY; extern const int MODE_NOCHECK; extern const int MODE_NOPRECEDE; extern const int MODE_NOPUT; extern const int MODE_NOSTORE; extern const int MODE_NOSUCCEED; extern const int COMM_TYPE_SHARED; extern const int COMBINER_CONTIGUOUS; extern const int COMBINER_DARRAY; extern const int COMBINER_DUP; extern const int COMBINER_F90_COMPLEX; extern const int COMBINER_F90_INTEGER; extern const int COMBINER_F90_REAL; extern const int COMBINER_HINDEXED_INTEGER; extern const int COMBINER_HINDEXED; extern const int COMBINER_HVECTOR_INTEGER; extern const int COMBINER_HVECTOR; extern const int COMBINER_INDEXED_BLOCK; extern const int COMBINER_INDEXED; extern const int COMBINER_NAMED; extern const int COMBINER_RESIZED; extern const int COMBINER_STRUCT_INTEGER; extern const int COMBINER_STRUCT; extern const int COMBINER_SUBARRAY; extern const int COMBINER_VECTOR; extern const int COMBINER_HINDEXED_BLOCK; extern const int THREAD_FUNNELED; extern const int THREAD_MULTIPLE; extern const int THREAD_SERIALIZED; extern const int THREAD_SINGLE; extern const char ** const ARGV_NULL; extern const char *** const ARGVS_NULL; extern void * const BOTTOM; extern void * const IN_PLACE; extern void Init(void); extern void Init(int &, char **& ); extern int Init_thread(int); extern int Init_thread(int &, char **&, int ); extern double Wtime(void); extern double Wtick(void); } # 1708 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int MPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int MPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int PMPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); # 62 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5api_adpt.h" 1 # 301 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5api_adpt.h" # 421 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5api_adpt.h" # 70 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" 2 extern "C" { typedef int herr_t; typedef unsigned int hbool_t; typedef int htri_t; # 145 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" typedef unsigned long long hsize_t; typedef signed long long hssize_t; typedef uint64_t haddr_t; # 203 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" # 223 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" # 243 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" # 263 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5public.h" typedef enum { H5_ITER_UNKNOWN = -1, H5_ITER_INC, H5_ITER_DEC, H5_ITER_NATIVE, H5_ITER_N } H5_iter_order_t; typedef enum H5_index_t { H5_INDEX_UNKNOWN = -1, H5_INDEX_NAME, H5_INDEX_CRT_ORDER, H5_INDEX_N } H5_index_t; typedef struct H5_ih_info_t { hsize_t index_size; hsize_t heap_size; } H5_ih_info_t; herr_t H5open(void); herr_t H5close(void); herr_t H5dont_atexit(void); herr_t H5garbage_collect(void); herr_t H5set_free_list_limits (int reg_global_lim, int reg_list_lim, int arr_global_lim, int arr_list_lim, int blk_global_lim, int blk_list_lim); herr_t H5get_libversion(unsigned *majnum, unsigned *minnum, unsigned *relnum); herr_t H5check_version(unsigned majnum, unsigned minnum, unsigned relnum); } # 25 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Apublic.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ipublic.h" 1 typedef enum H5I_type_t { H5I_UNINIT = (-2), H5I_BADID = (-1), H5I_FILE = 1, H5I_GROUP, H5I_DATATYPE, H5I_DATASPACE, H5I_DATASET, H5I_ATTR, H5I_REFERENCE, H5I_VFL, H5I_GENPROP_CLS, H5I_GENPROP_LST, H5I_ERROR_CLASS, H5I_ERROR_MSG, H5I_ERROR_STACK, H5I_NTYPES } H5I_type_t; typedef int hid_t; typedef herr_t (*H5I_free_t)(void*); typedef int (*H5I_search_func_t)(void *obj, hid_t id, void *key); extern "C" { hid_t H5Iregister(H5I_type_t type, const void *object); void *H5Iobject_verify(hid_t id, H5I_type_t id_type); void *H5Iremove_verify(hid_t id, H5I_type_t id_type); H5I_type_t H5Iget_type(hid_t id); hid_t H5Iget_file_id(hid_t id); ssize_t H5Iget_name(hid_t id, char *name , size_t size); int H5Iinc_ref(hid_t id); int H5Idec_ref(hid_t id); int H5Iget_ref(hid_t id); H5I_type_t H5Iregister_type(size_t hash_size, unsigned reserved, H5I_free_t free_func); herr_t H5Iclear_type(H5I_type_t type, hbool_t force); herr_t H5Idestroy_type(H5I_type_t type); int H5Iinc_type_ref(H5I_type_t type); int H5Idec_type_ref(H5I_type_t type); int H5Iget_type_ref(H5I_type_t type); void *H5Isearch(H5I_type_t type, H5I_search_func_t func, void *key); herr_t H5Inmembers(H5I_type_t type, hsize_t *num_members); htri_t H5Itype_exists(H5I_type_t type); htri_t H5Iis_valid(hid_t id); } # 24 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Apublic.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Opublic.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Lpublic.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" 1 typedef enum H5T_class_t { H5T_NO_CLASS = -1, H5T_INTEGER = 0, H5T_FLOAT = 1, H5T_TIME = 2, H5T_STRING = 3, H5T_BITFIELD = 4, H5T_OPAQUE = 5, H5T_COMPOUND = 6, H5T_REFERENCE = 7, H5T_ENUM = 8, H5T_VLEN = 9, H5T_ARRAY = 10, H5T_NCLASSES } H5T_class_t; typedef enum H5T_order_t { H5T_ORDER_ERROR = -1, H5T_ORDER_LE = 0, H5T_ORDER_BE = 1, H5T_ORDER_VAX = 2, H5T_ORDER_MIXED = 3, H5T_ORDER_NONE = 4 } H5T_order_t; typedef enum H5T_sign_t { H5T_SGN_ERROR = -1, H5T_SGN_NONE = 0, H5T_SGN_2 = 1, H5T_NSGN = 2 } H5T_sign_t; typedef enum H5T_norm_t { H5T_NORM_ERROR = -1, H5T_NORM_IMPLIED = 0, H5T_NORM_MSBSET = 1, H5T_NORM_NONE = 2 } H5T_norm_t; typedef enum H5T_cset_t { H5T_CSET_ERROR = -1, H5T_CSET_ASCII = 0, H5T_CSET_UTF8 = 1, H5T_CSET_RESERVED_2 = 2, H5T_CSET_RESERVED_3 = 3, H5T_CSET_RESERVED_4 = 4, H5T_CSET_RESERVED_5 = 5, H5T_CSET_RESERVED_6 = 6, H5T_CSET_RESERVED_7 = 7, H5T_CSET_RESERVED_8 = 8, H5T_CSET_RESERVED_9 = 9, H5T_CSET_RESERVED_10 = 10, H5T_CSET_RESERVED_11 = 11, H5T_CSET_RESERVED_12 = 12, H5T_CSET_RESERVED_13 = 13, H5T_CSET_RESERVED_14 = 14, H5T_CSET_RESERVED_15 = 15 } H5T_cset_t; typedef enum H5T_str_t { H5T_STR_ERROR = -1, H5T_STR_NULLTERM = 0, H5T_STR_NULLPAD = 1, H5T_STR_SPACEPAD = 2, H5T_STR_RESERVED_3 = 3, H5T_STR_RESERVED_4 = 4, H5T_STR_RESERVED_5 = 5, H5T_STR_RESERVED_6 = 6, H5T_STR_RESERVED_7 = 7, H5T_STR_RESERVED_8 = 8, H5T_STR_RESERVED_9 = 9, H5T_STR_RESERVED_10 = 10, H5T_STR_RESERVED_11 = 11, H5T_STR_RESERVED_12 = 12, H5T_STR_RESERVED_13 = 13, H5T_STR_RESERVED_14 = 14, H5T_STR_RESERVED_15 = 15 } H5T_str_t; typedef enum H5T_pad_t { H5T_PAD_ERROR = -1, H5T_PAD_ZERO = 0, H5T_PAD_ONE = 1, H5T_PAD_BACKGROUND = 2, H5T_NPAD = 3 } H5T_pad_t; typedef enum H5T_cmd_t { H5T_CONV_INIT = 0, H5T_CONV_CONV = 1, H5T_CONV_FREE = 2 } H5T_cmd_t; typedef enum H5T_bkg_t { H5T_BKG_NO = 0, H5T_BKG_TEMP = 1, H5T_BKG_YES = 2 } H5T_bkg_t; typedef struct H5T_cdata_t { H5T_cmd_t command; H5T_bkg_t need_bkg; hbool_t recalc; void *priv; } H5T_cdata_t; typedef enum H5T_pers_t { H5T_PERS_DONTCARE = -1, H5T_PERS_HARD = 0, H5T_PERS_SOFT = 1 } H5T_pers_t; typedef enum H5T_direction_t { H5T_DIR_DEFAULT = 0, H5T_DIR_ASCEND = 1, H5T_DIR_DESCEND = 2 } H5T_direction_t; typedef enum H5T_conv_except_t { H5T_CONV_EXCEPT_RANGE_HI = 0, H5T_CONV_EXCEPT_RANGE_LOW = 1, H5T_CONV_EXCEPT_PRECISION = 2, H5T_CONV_EXCEPT_TRUNCATE = 3, H5T_CONV_EXCEPT_PINF = 4, H5T_CONV_EXCEPT_NINF = 5, H5T_CONV_EXCEPT_NAN = 6 } H5T_conv_except_t; typedef enum H5T_conv_ret_t { H5T_CONV_ABORT = -1, H5T_CONV_UNHANDLED = 0, H5T_CONV_HANDLED = 1 } H5T_conv_ret_t; typedef struct { size_t len; void *p; } hvl_t; extern "C" { typedef herr_t (*H5T_conv_t) (hid_t src_id, hid_t dst_id, H5T_cdata_t *cdata, size_t nelmts, size_t buf_stride, size_t bkg_stride, void *buf, void *bkg, hid_t dset_xfer_plist); typedef H5T_conv_ret_t (*H5T_conv_except_func_t)(H5T_conv_except_t except_type, hid_t src_id, hid_t dst_id, void *src_buf, void *dst_buf, void *user_data); # 226 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_IEEE_F32BE_g; extern hid_t H5T_IEEE_F32LE_g; extern hid_t H5T_IEEE_F64BE_g; extern hid_t H5T_IEEE_F64LE_g; # 269 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_STD_I8BE_g; extern hid_t H5T_STD_I8LE_g; extern hid_t H5T_STD_I16BE_g; extern hid_t H5T_STD_I16LE_g; extern hid_t H5T_STD_I32BE_g; extern hid_t H5T_STD_I32LE_g; extern hid_t H5T_STD_I64BE_g; extern hid_t H5T_STD_I64LE_g; extern hid_t H5T_STD_U8BE_g; extern hid_t H5T_STD_U8LE_g; extern hid_t H5T_STD_U16BE_g; extern hid_t H5T_STD_U16LE_g; extern hid_t H5T_STD_U32BE_g; extern hid_t H5T_STD_U32LE_g; extern hid_t H5T_STD_U64BE_g; extern hid_t H5T_STD_U64LE_g; extern hid_t H5T_STD_B8BE_g; extern hid_t H5T_STD_B8LE_g; extern hid_t H5T_STD_B16BE_g; extern hid_t H5T_STD_B16LE_g; extern hid_t H5T_STD_B32BE_g; extern hid_t H5T_STD_B32LE_g; extern hid_t H5T_STD_B64BE_g; extern hid_t H5T_STD_B64LE_g; extern hid_t H5T_STD_REF_OBJ_g; extern hid_t H5T_STD_REF_DSETREG_g; extern hid_t H5T_UNIX_D32BE_g; extern hid_t H5T_UNIX_D32LE_g; extern hid_t H5T_UNIX_D64BE_g; extern hid_t H5T_UNIX_D64LE_g; extern hid_t H5T_C_S1_g; extern hid_t H5T_FORTRAN_S1_g; # 339 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" # 358 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" # 377 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_VAX_F32_g; extern hid_t H5T_VAX_F64_g; # 421 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_NATIVE_SCHAR_g; extern hid_t H5T_NATIVE_UCHAR_g; extern hid_t H5T_NATIVE_SHORT_g; extern hid_t H5T_NATIVE_USHORT_g; extern hid_t H5T_NATIVE_INT_g; extern hid_t H5T_NATIVE_UINT_g; extern hid_t H5T_NATIVE_LONG_g; extern hid_t H5T_NATIVE_ULONG_g; extern hid_t H5T_NATIVE_LLONG_g; extern hid_t H5T_NATIVE_ULLONG_g; extern hid_t H5T_NATIVE_FLOAT_g; extern hid_t H5T_NATIVE_DOUBLE_g; extern hid_t H5T_NATIVE_LDOUBLE_g; extern hid_t H5T_NATIVE_B8_g; extern hid_t H5T_NATIVE_B16_g; extern hid_t H5T_NATIVE_B32_g; extern hid_t H5T_NATIVE_B64_g; extern hid_t H5T_NATIVE_OPAQUE_g; extern hid_t H5T_NATIVE_HADDR_g; extern hid_t H5T_NATIVE_HSIZE_g; extern hid_t H5T_NATIVE_HSSIZE_g; extern hid_t H5T_NATIVE_HERR_g; extern hid_t H5T_NATIVE_HBOOL_g; # 454 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_NATIVE_INT8_g; extern hid_t H5T_NATIVE_UINT8_g; extern hid_t H5T_NATIVE_INT_LEAST8_g; extern hid_t H5T_NATIVE_UINT_LEAST8_g; extern hid_t H5T_NATIVE_INT_FAST8_g; extern hid_t H5T_NATIVE_UINT_FAST8_g; # 467 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_NATIVE_INT16_g; extern hid_t H5T_NATIVE_UINT16_g; extern hid_t H5T_NATIVE_INT_LEAST16_g; extern hid_t H5T_NATIVE_UINT_LEAST16_g; extern hid_t H5T_NATIVE_INT_FAST16_g; extern hid_t H5T_NATIVE_UINT_FAST16_g; # 480 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_NATIVE_INT32_g; extern hid_t H5T_NATIVE_UINT32_g; extern hid_t H5T_NATIVE_INT_LEAST32_g; extern hid_t H5T_NATIVE_UINT_LEAST32_g; extern hid_t H5T_NATIVE_INT_FAST32_g; extern hid_t H5T_NATIVE_UINT_FAST32_g; # 493 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Tpublic.h" extern hid_t H5T_NATIVE_INT64_g; extern hid_t H5T_NATIVE_UINT64_g; extern hid_t H5T_NATIVE_INT_LEAST64_g; extern hid_t H5T_NATIVE_UINT_LEAST64_g; extern hid_t H5T_NATIVE_INT_FAST64_g; extern hid_t H5T_NATIVE_UINT_FAST64_g; hid_t H5Tcreate(H5T_class_t type, size_t size); hid_t H5Tcopy(hid_t type_id); herr_t H5Tclose(hid_t type_id); htri_t H5Tequal(hid_t type1_id, hid_t type2_id); herr_t H5Tlock(hid_t type_id); herr_t H5Tcommit2(hid_t loc_id, const char *name, hid_t type_id, hid_t lcpl_id, hid_t tcpl_id, hid_t tapl_id); hid_t H5Topen2(hid_t loc_id, const char *name, hid_t tapl_id); herr_t H5Tcommit_anon(hid_t loc_id, hid_t type_id, hid_t tcpl_id, hid_t tapl_id); hid_t H5Tget_create_plist(hid_t type_id); htri_t H5Tcommitted(hid_t type_id); herr_t H5Tencode(hid_t obj_id, void *buf, size_t *nalloc); hid_t H5Tdecode(const void *buf); herr_t H5Tinsert(hid_t parent_id, const char *name, size_t offset, hid_t member_id); herr_t H5Tpack(hid_t type_id); hid_t H5Tenum_create(hid_t base_id); herr_t H5Tenum_insert(hid_t type, const char *name, const void *value); herr_t H5Tenum_nameof(hid_t type, const void *value, char *name , size_t size); herr_t H5Tenum_valueof(hid_t type, const char *name, void *value ); hid_t H5Tvlen_create(hid_t base_id); hid_t H5Tarray_create2(hid_t base_id, unsigned ndims, const hsize_t dim[ ]); int H5Tget_array_ndims(hid_t type_id); int H5Tget_array_dims2(hid_t type_id, hsize_t dims[]); herr_t H5Tset_tag(hid_t type, const char *tag); char *H5Tget_tag(hid_t type); hid_t H5Tget_super(hid_t type); H5T_class_t H5Tget_class(hid_t type_id); htri_t H5Tdetect_class(hid_t type_id, H5T_class_t cls); size_t H5Tget_size(hid_t type_id); H5T_order_t H5Tget_order(hid_t type_id); size_t H5Tget_precision(hid_t type_id); int H5Tget_offset(hid_t type_id); herr_t H5Tget_pad(hid_t type_id, H5T_pad_t *lsb , H5T_pad_t *msb ); H5T_sign_t H5Tget_sign(hid_t type_id); herr_t H5Tget_fields(hid_t type_id, size_t *spos , size_t *epos , size_t *esize , size_t *mpos , size_t *msize ); size_t H5Tget_ebias(hid_t type_id); H5T_norm_t H5Tget_norm(hid_t type_id); H5T_pad_t H5Tget_inpad(hid_t type_id); H5T_str_t H5Tget_strpad(hid_t type_id); int H5Tget_nmembers(hid_t type_id); char *H5Tget_member_name(hid_t type_id, unsigned membno); int H5Tget_member_index(hid_t type_id, const char *name); size_t H5Tget_member_offset(hid_t type_id, unsigned membno); H5T_class_t H5Tget_member_class(hid_t type_id, unsigned membno); hid_t H5Tget_member_type(hid_t type_id, unsigned membno); herr_t H5Tget_member_value(hid_t type_id, unsigned membno, void *value ); H5T_cset_t H5Tget_cset(hid_t type_id); htri_t H5Tis_variable_str(hid_t type_id); hid_t H5Tget_native_type(hid_t type_id, H5T_direction_t direction); herr_t H5Tset_size(hid_t type_id, size_t size); herr_t H5Tset_order(hid_t type_id, H5T_order_t order); herr_t H5Tset_precision(hid_t type_id, size_t prec); herr_t H5Tset_offset(hid_t type_id, size_t offset); herr_t H5Tset_pad(hid_t type_id, H5T_pad_t lsb, H5T_pad_t msb); herr_t H5Tset_sign(hid_t type_id, H5T_sign_t sign); herr_t H5Tset_fields(hid_t type_id, size_t spos, size_t epos, size_t esize, size_t mpos, size_t msize); herr_t H5Tset_ebias(hid_t type_id, size_t ebias); herr_t H5Tset_norm(hid_t type_id, H5T_norm_t norm); herr_t H5Tset_inpad(hid_t type_id, H5T_pad_t pad); herr_t H5Tset_cset(hid_t type_id, H5T_cset_t cset); herr_t H5Tset_strpad(hid_t type_id, H5T_str_t strpad); herr_t H5Tregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); herr_t H5Tunregister(H5T_pers_t pers, const char *name, hid_t src_id, hid_t dst_id, H5T_conv_t func); H5T_conv_t H5Tfind(hid_t src_id, hid_t dst_id, H5T_cdata_t **pcdata); htri_t H5Tcompiler_conv(hid_t src_id, hid_t dst_id); herr_t H5Tconvert(hid_t src_id, hid_t dst_id, size_t nelmts, void *buf, void *background, hid_t plist_id); herr_t H5Tcommit1(hid_t loc_id, const char *name, hid_t type_id); hid_t H5Topen1(hid_t loc_id, const char *name); hid_t H5Tarray_create1(hid_t base_id, int ndims, const hsize_t dim[ ], const int perm[ ]); int H5Tget_array_dims1(hid_t type_id, hsize_t dims[], int perm[]); } # 33 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Lpublic.h" 2 extern "C" { typedef enum { H5L_TYPE_ERROR = (-1), H5L_TYPE_HARD = 0, H5L_TYPE_SOFT = 1, H5L_TYPE_EXTERNAL = 64, H5L_TYPE_MAX = 255 } H5L_type_t; typedef struct { H5L_type_t type; hbool_t corder_valid; int64_t corder; H5T_cset_t cset; union { haddr_t address; size_t val_size; } u; } H5L_info_t; typedef herr_t (*H5L_create_func_t)(const char *link_name, hid_t loc_group, const void *lnkdata, size_t lnkdata_size, hid_t lcpl_id); typedef herr_t (*H5L_move_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef herr_t (*H5L_copy_func_t)(const char *new_name, hid_t new_loc, const void *lnkdata, size_t lnkdata_size); typedef herr_t (*H5L_traverse_func_t)(const char *link_name, hid_t cur_group, const void *lnkdata, size_t lnkdata_size, hid_t lapl_id); typedef herr_t (*H5L_delete_func_t)(const char *link_name, hid_t file, const void *lnkdata, size_t lnkdata_size); typedef ssize_t (*H5L_query_func_t)(const char *link_name, const void *lnkdata, size_t lnkdata_size, void *buf , size_t buf_size); typedef struct { int version; H5L_type_t id; const char *comment; H5L_create_func_t create_func; H5L_move_func_t move_func; H5L_copy_func_t copy_func; H5L_traverse_func_t trav_func; H5L_delete_func_t del_func; H5L_query_func_t query_func; } H5L_class_t; typedef herr_t (*H5L_iterate_t)(hid_t group, const char *name, const H5L_info_t *info, void *op_data); typedef herr_t (*H5L_elink_traverse_t)(const char *parent_file_name, const char *parent_group_name, const char *child_file_name, const char *child_object_name, unsigned *acc_flags, hid_t fapl_id, void *op_data); herr_t H5Lmove(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcopy(hid_t src_loc, const char *src_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcreate_hard(hid_t cur_loc, const char *cur_name, hid_t dst_loc, const char *dst_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lcreate_soft(const char *link_target, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Ldelete(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Ldelete_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); herr_t H5Lget_val(hid_t loc_id, const char *name, void *buf , size_t size, hid_t lapl_id); herr_t H5Lget_val_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, void *buf , size_t size, hid_t lapl_id); htri_t H5Lexists(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Lget_info(hid_t loc_id, const char *name, H5L_info_t *linfo , hid_t lapl_id); herr_t H5Lget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5L_info_t *linfo , hid_t lapl_id); ssize_t H5Lget_name_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); herr_t H5Literate(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data); herr_t H5Literate_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5L_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Lvisit(hid_t grp_id, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data); herr_t H5Lvisit_by_name(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, H5L_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Lcreate_ud(hid_t link_loc_id, const char *link_name, H5L_type_t link_type, const void *udata, size_t udata_size, hid_t lcpl_id, hid_t lapl_id); herr_t H5Lregister(const H5L_class_t *cls); herr_t H5Lunregister(H5L_type_t id); htri_t H5Lis_registered(H5L_type_t id); herr_t H5Lunpack_elink_val(const void *ext_linkval , size_t link_size, unsigned *flags, const char **filename , const char **obj_path ); herr_t H5Lcreate_external(const char *file_name, const char *obj_name, hid_t link_loc_id, const char *link_name, hid_t lcpl_id, hid_t lapl_id); } # 34 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Opublic.h" 2 # 48 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Opublic.h" # 63 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Opublic.h" # 71 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Opublic.h" typedef enum H5O_type_t { H5O_TYPE_UNKNOWN = -1, H5O_TYPE_GROUP, H5O_TYPE_DATASET, H5O_TYPE_NAMED_DATATYPE, H5O_TYPE_NTYPES } H5O_type_t; typedef struct H5O_hdr_info_t { unsigned version; unsigned nmesgs; unsigned nchunks; unsigned flags; struct { hsize_t total; hsize_t meta; hsize_t mesg; hsize_t free; } space; struct { uint64_t present; uint64_t shared; } mesg; } H5O_hdr_info_t; typedef struct H5O_info_t { unsigned long fileno; haddr_t addr; H5O_type_t type; unsigned rc; time_t atime; time_t mtime; time_t ctime; time_t btime; hsize_t num_attrs; H5O_hdr_info_t hdr; struct { H5_ih_info_t obj; H5_ih_info_t attr; } meta_size; } H5O_info_t; typedef uint32_t H5O_msg_crt_idx_t; typedef herr_t (*H5O_iterate_t)(hid_t obj, const char *name, const H5O_info_t *info, void *op_data); typedef enum H5O_mcdt_search_ret_t { H5O_MCDT_SEARCH_ERROR = -1, H5O_MCDT_SEARCH_CONT, H5O_MCDT_SEARCH_STOP } H5O_mcdt_search_ret_t; typedef H5O_mcdt_search_ret_t (*H5O_mcdt_search_cb_t)(void *op_data); extern "C" { hid_t H5Oopen(hid_t loc_id, const char *name, hid_t lapl_id); hid_t H5Oopen_by_addr(hid_t loc_id, haddr_t addr); hid_t H5Oopen_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); htri_t H5Oexists_by_name(hid_t loc_id, const char *name, hid_t lapl_id); herr_t H5Oget_info(hid_t loc_id, H5O_info_t *oinfo); herr_t H5Oget_info_by_name(hid_t loc_id, const char *name, H5O_info_t *oinfo, hid_t lapl_id); herr_t H5Oget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5O_info_t *oinfo, hid_t lapl_id); herr_t H5Olink(hid_t obj_id, hid_t new_loc_id, const char *new_name, hid_t lcpl_id, hid_t lapl_id); herr_t H5Oincr_refcount(hid_t object_id); herr_t H5Odecr_refcount(hid_t object_id); herr_t H5Ocopy(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name, hid_t ocpypl_id, hid_t lcpl_id); herr_t H5Oset_comment(hid_t obj_id, const char *comment); herr_t H5Oset_comment_by_name(hid_t loc_id, const char *name, const char *comment, hid_t lapl_id); ssize_t H5Oget_comment(hid_t obj_id, char *comment, size_t bufsize); ssize_t H5Oget_comment_by_name(hid_t loc_id, const char *name, char *comment, size_t bufsize, hid_t lapl_id); herr_t H5Ovisit(hid_t obj_id, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data); herr_t H5Ovisit_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, H5O_iterate_t op, void *op_data, hid_t lapl_id); herr_t H5Oclose(hid_t object_id); typedef struct H5O_stat_t { hsize_t size; hsize_t free; unsigned nmesgs; unsigned nchunks; } H5O_stat_t; } # 25 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Apublic.h" 2 extern "C" { typedef struct { hbool_t corder_valid; H5O_msg_crt_idx_t corder; H5T_cset_t cset; hsize_t data_size; } H5A_info_t; typedef herr_t (*H5A_operator2_t)(hid_t location_id , const char *attr_name , const H5A_info_t *ainfo , void *op_data ); hid_t H5Acreate2(hid_t loc_id, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id); hid_t H5Acreate_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t lapl_id); hid_t H5Aopen(hid_t obj_id, const char *attr_name, hid_t aapl_id); hid_t H5Aopen_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t aapl_id, hid_t lapl_id); hid_t H5Aopen_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t aapl_id, hid_t lapl_id); herr_t H5Awrite(hid_t attr_id, hid_t type_id, const void *buf); herr_t H5Aread(hid_t attr_id, hid_t type_id, void *buf); herr_t H5Aclose(hid_t attr_id); hid_t H5Aget_space(hid_t attr_id); hid_t H5Aget_type(hid_t attr_id); hid_t H5Aget_create_plist(hid_t attr_id); ssize_t H5Aget_name(hid_t attr_id, size_t buf_size, char *buf); ssize_t H5Aget_name_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, char *name , size_t size, hid_t lapl_id); hsize_t H5Aget_storage_size(hid_t attr_id); herr_t H5Aget_info(hid_t attr_id, H5A_info_t *ainfo ); herr_t H5Aget_info_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, H5A_info_t *ainfo , hid_t lapl_id); herr_t H5Aget_info_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5A_info_t *ainfo , hid_t lapl_id); herr_t H5Arename(hid_t loc_id, const char *old_name, const char *new_name); herr_t H5Arename_by_name(hid_t loc_id, const char *obj_name, const char *old_attr_name, const char *new_attr_name, hid_t lapl_id); herr_t H5Aiterate2(hid_t loc_id, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data); herr_t H5Aiterate_by_name(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t *idx, H5A_operator2_t op, void *op_data, hid_t lapd_id); herr_t H5Adelete(hid_t loc_id, const char *name); herr_t H5Adelete_by_name(hid_t loc_id, const char *obj_name, const char *attr_name, hid_t lapl_id); herr_t H5Adelete_by_idx(hid_t loc_id, const char *obj_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, hid_t lapl_id); htri_t H5Aexists(hid_t obj_id, const char *attr_name); htri_t H5Aexists_by_name(hid_t obj_id, const char *obj_name, const char *attr_name, hid_t lapl_id); typedef herr_t (*H5A_operator1_t)(hid_t location_id , const char *attr_name , void *operator_data ); hid_t H5Acreate1(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t acpl_id); hid_t H5Aopen_name(hid_t loc_id, const char *name); hid_t H5Aopen_idx(hid_t loc_id, unsigned idx); int H5Aget_num_attrs(hid_t loc_id); herr_t H5Aiterate1(hid_t loc_id, unsigned *attr_num, H5A_operator1_t op, void *op_data); } # 26 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5ACpublic.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Cpublic.h" 1 extern "C" { enum H5C_cache_incr_mode { H5C_incr__off, H5C_incr__threshold }; enum H5C_cache_flash_incr_mode { H5C_flash_incr__off, H5C_flash_incr__add_space }; enum H5C_cache_decr_mode { H5C_decr__off, H5C_decr__threshold, H5C_decr__age_out, H5C_decr__age_out_with_threshold }; } # 34 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5ACpublic.h" 2 extern "C" { typedef struct H5AC_cache_config_t { int version; hbool_t rpt_fcn_enabled; hbool_t open_trace_file; hbool_t close_trace_file; char trace_file_name[1024 + 1]; hbool_t evictions_enabled; hbool_t set_initial_size; size_t initial_size; double min_clean_fraction; size_t max_size; size_t min_size; long int epoch_length; enum H5C_cache_incr_mode incr_mode; double lower_hr_threshold; double increment; hbool_t apply_max_increment; size_t max_increment; enum H5C_cache_flash_incr_mode flash_incr_mode; double flash_multiple; double flash_threshold; enum H5C_cache_decr_mode decr_mode; double upper_hr_threshold; double decrement; hbool_t apply_max_decrement; size_t max_decrement; int epochs_before_eviction; hbool_t apply_empty_reserve; double empty_reserve; int dirty_bytes_threshold; int metadata_write_strategy; } H5AC_cache_config_t; } # 27 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Dpublic.h" 1 typedef enum H5D_layout_t { H5D_LAYOUT_ERROR = -1, H5D_COMPACT = 0, H5D_CONTIGUOUS = 1, H5D_CHUNKED = 2, H5D_NLAYOUTS = 3 } H5D_layout_t; typedef enum H5D_chunk_index_t { H5D_CHUNK_BTREE = 0 } H5D_chunk_index_t; typedef enum H5D_alloc_time_t { H5D_ALLOC_TIME_ERROR = -1, H5D_ALLOC_TIME_DEFAULT = 0, H5D_ALLOC_TIME_EARLY = 1, H5D_ALLOC_TIME_LATE = 2, H5D_ALLOC_TIME_INCR = 3 } H5D_alloc_time_t; typedef enum H5D_space_status_t { H5D_SPACE_STATUS_ERROR = -1, H5D_SPACE_STATUS_NOT_ALLOCATED = 0, H5D_SPACE_STATUS_PART_ALLOCATED = 1, H5D_SPACE_STATUS_ALLOCATED = 2 } H5D_space_status_t; typedef enum H5D_fill_time_t { H5D_FILL_TIME_ERROR = -1, H5D_FILL_TIME_ALLOC = 0, H5D_FILL_TIME_NEVER = 1, H5D_FILL_TIME_IFSET = 2 } H5D_fill_time_t; typedef enum H5D_fill_value_t { H5D_FILL_VALUE_ERROR =-1, H5D_FILL_VALUE_UNDEFINED =0, H5D_FILL_VALUE_DEFAULT =1, H5D_FILL_VALUE_USER_DEFINED =2 } H5D_fill_value_t; extern "C" { typedef herr_t (*H5D_operator_t)(void *elem, hid_t type_id, unsigned ndim, const hsize_t *point, void *operator_data); typedef herr_t (*H5D_scatter_func_t)(const void **src_buf , size_t *src_buf_bytes_used , void *op_data); typedef herr_t (*H5D_gather_func_t)(const void *dst_buf, size_t dst_buf_bytes_used, void *op_data); hid_t H5Dcreate2(hid_t loc_id, const char *name, hid_t type_id, hid_t space_id, hid_t lcpl_id, hid_t dcpl_id, hid_t dapl_id); hid_t H5Dcreate_anon(hid_t file_id, hid_t type_id, hid_t space_id, hid_t plist_id, hid_t dapl_id); hid_t H5Dopen2(hid_t file_id, const char *name, hid_t dapl_id); herr_t H5Dclose(hid_t dset_id); hid_t H5Dget_space(hid_t dset_id); herr_t H5Dget_space_status(hid_t dset_id, H5D_space_status_t *allocation); hid_t H5Dget_type(hid_t dset_id); hid_t H5Dget_create_plist(hid_t dset_id); hid_t H5Dget_access_plist(hid_t dset_id); hsize_t H5Dget_storage_size(hid_t dset_id); haddr_t H5Dget_offset(hid_t dset_id); herr_t H5Dread(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, void *buf ); herr_t H5Dwrite(hid_t dset_id, hid_t mem_type_id, hid_t mem_space_id, hid_t file_space_id, hid_t plist_id, const void *buf); herr_t H5Diterate(void *buf, hid_t type_id, hid_t space_id, H5D_operator_t op, void *operator_data); herr_t H5Dvlen_reclaim(hid_t type_id, hid_t space_id, hid_t plist_id, void *buf); herr_t H5Dvlen_get_buf_size(hid_t dataset_id, hid_t type_id, hid_t space_id, hsize_t *size); herr_t H5Dfill(const void *fill, hid_t fill_type, void *buf, hid_t buf_type, hid_t space); herr_t H5Dset_extent(hid_t dset_id, const hsize_t size[]); herr_t H5Dscatter(H5D_scatter_func_t op, void *op_data, hid_t type_id, hid_t dst_space_id, void *dst_buf); herr_t H5Dgather(hid_t src_space_id, const void *src_buf, hid_t type_id, size_t dst_buf_size, void *dst_buf, H5D_gather_func_t op, void *op_data); herr_t H5Ddebug(hid_t dset_id); hid_t H5Dcreate1(hid_t file_id, const char *name, hid_t type_id, hid_t space_id, hid_t dcpl_id); hid_t H5Dopen1(hid_t file_id, const char *name); herr_t H5Dextend(hid_t dset_id, const hsize_t size[]); } # 28 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epublic.h" 1 typedef enum H5E_type_t { H5E_MAJOR, H5E_MINOR } H5E_type_t; typedef struct H5E_error2_t { hid_t cls_id; hid_t maj_num; hid_t min_num; unsigned line; const char *func_name; const char *file_name; const char *desc; } H5E_error2_t; # 55 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epublic.h" extern hid_t H5E_ERR_CLS_g; # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" 1 # 58 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_DATASET_g; extern hid_t H5E_FUNC_g; extern hid_t H5E_STORAGE_g; extern hid_t H5E_FILE_g; extern hid_t H5E_SOHM_g; extern hid_t H5E_SYM_g; extern hid_t H5E_PLUGIN_g; extern hid_t H5E_VFL_g; extern hid_t H5E_INTERNAL_g; extern hid_t H5E_BTREE_g; extern hid_t H5E_REFERENCE_g; extern hid_t H5E_DATASPACE_g; extern hid_t H5E_RESOURCE_g; extern hid_t H5E_PLIST_g; extern hid_t H5E_LINK_g; extern hid_t H5E_DATATYPE_g; extern hid_t H5E_RS_g; extern hid_t H5E_HEAP_g; extern hid_t H5E_OHDR_g; extern hid_t H5E_ATOM_g; extern hid_t H5E_ATTR_g; extern hid_t H5E_NONE_MAJOR_g; extern hid_t H5E_IO_g; extern hid_t H5E_SLIST_g; extern hid_t H5E_EFL_g; extern hid_t H5E_TST_g; extern hid_t H5E_ARGS_g; extern hid_t H5E_ERROR_g; extern hid_t H5E_PLINE_g; extern hid_t H5E_FSPACE_g; extern hid_t H5E_CACHE_g; # 101 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_SEEKERROR_g; extern hid_t H5E_READERROR_g; extern hid_t H5E_WRITEERROR_g; extern hid_t H5E_CLOSEERROR_g; extern hid_t H5E_OVERFLOW_g; extern hid_t H5E_FCNTL_g; # 119 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_NOSPACE_g; extern hid_t H5E_CANTALLOC_g; extern hid_t H5E_CANTCOPY_g; extern hid_t H5E_CANTFREE_g; extern hid_t H5E_ALREADYEXISTS_g; extern hid_t H5E_CANTLOCK_g; extern hid_t H5E_CANTUNLOCK_g; extern hid_t H5E_CANTGC_g; extern hid_t H5E_CANTGETSIZE_g; extern hid_t H5E_OBJOPEN_g; # 137 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_CANTRESTORE_g; extern hid_t H5E_CANTCOMPUTE_g; extern hid_t H5E_CANTEXTEND_g; extern hid_t H5E_CANTATTACH_g; extern hid_t H5E_CANTUPDATE_g; extern hid_t H5E_CANTOPERATE_g; extern hid_t H5E_CANTINIT_g; extern hid_t H5E_ALREADYINIT_g; extern hid_t H5E_CANTRELEASE_g; extern hid_t H5E_CANTGET_g; extern hid_t H5E_CANTSET_g; extern hid_t H5E_DUPCLASS_g; extern hid_t H5E_SETDISALLOWED_g; extern hid_t H5E_CANTMERGE_g; extern hid_t H5E_CANTREVIVE_g; extern hid_t H5E_CANTSHRINK_g; # 180 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_LINKCOUNT_g; extern hid_t H5E_VERSION_g; extern hid_t H5E_ALIGNMENT_g; extern hid_t H5E_BADMESG_g; extern hid_t H5E_CANTDELETE_g; extern hid_t H5E_BADITER_g; extern hid_t H5E_CANTPACK_g; extern hid_t H5E_CANTRESET_g; extern hid_t H5E_CANTRENAME_g; extern hid_t H5E_SYSERRSTR_g; # 201 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_NOFILTER_g; extern hid_t H5E_CALLBACK_g; extern hid_t H5E_CANAPPLY_g; extern hid_t H5E_SETLOCAL_g; extern hid_t H5E_NOENCODER_g; extern hid_t H5E_CANTFILTER_g; extern hid_t H5E_CANTOPENOBJ_g; extern hid_t H5E_CANTCLOSEOBJ_g; extern hid_t H5E_COMPLEN_g; extern hid_t H5E_PATH_g; extern hid_t H5E_NONE_MINOR_g; extern hid_t H5E_OPENERROR_g; # 236 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_FILEEXISTS_g; extern hid_t H5E_FILEOPEN_g; extern hid_t H5E_CANTCREATE_g; extern hid_t H5E_CANTOPENFILE_g; extern hid_t H5E_CANTCLOSEFILE_g; extern hid_t H5E_NOTHDF5_g; extern hid_t H5E_BADFILE_g; extern hid_t H5E_TRUNCATED_g; extern hid_t H5E_MOUNT_g; # 253 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_BADATOM_g; extern hid_t H5E_BADGROUP_g; extern hid_t H5E_CANTREGISTER_g; extern hid_t H5E_CANTINC_g; extern hid_t H5E_CANTDEC_g; extern hid_t H5E_NOIDS_g; # 276 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_CANTFLUSH_g; extern hid_t H5E_CANTSERIALIZE_g; extern hid_t H5E_CANTLOAD_g; extern hid_t H5E_PROTECT_g; extern hid_t H5E_NOTCACHED_g; extern hid_t H5E_SYSTEM_g; extern hid_t H5E_CANTINS_g; extern hid_t H5E_CANTPROTECT_g; extern hid_t H5E_CANTUNPROTECT_g; extern hid_t H5E_CANTPIN_g; extern hid_t H5E_CANTUNPIN_g; extern hid_t H5E_CANTMARKDIRTY_g; extern hid_t H5E_CANTDIRTY_g; extern hid_t H5E_CANTEXPUNGE_g; extern hid_t H5E_CANTRESIZE_g; extern hid_t H5E_TRAVERSE_g; extern hid_t H5E_NLINKS_g; extern hid_t H5E_NOTREGISTERED_g; extern hid_t H5E_CANTMOVE_g; extern hid_t H5E_CANTSORT_g; extern hid_t H5E_MPI_g; extern hid_t H5E_MPIERRSTR_g; extern hid_t H5E_CANTRECV_g; # 319 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_CANTCLIP_g; extern hid_t H5E_CANTCOUNT_g; extern hid_t H5E_CANTSELECT_g; extern hid_t H5E_CANTNEXT_g; extern hid_t H5E_BADSELECT_g; extern hid_t H5E_CANTCOMPARE_g; extern hid_t H5E_UNINITIALIZED_g; extern hid_t H5E_UNSUPPORTED_g; extern hid_t H5E_BADTYPE_g; extern hid_t H5E_BADRANGE_g; extern hid_t H5E_BADVALUE_g; # 350 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epubgen.h" extern hid_t H5E_NOTFOUND_g; extern hid_t H5E_EXISTS_g; extern hid_t H5E_CANTENCODE_g; extern hid_t H5E_CANTDECODE_g; extern hid_t H5E_CANTSPLIT_g; extern hid_t H5E_CANTREDISTRIBUTE_g; extern hid_t H5E_CANTSWAP_g; extern hid_t H5E_CANTINSERT_g; extern hid_t H5E_CANTLIST_g; extern hid_t H5E_CANTMODIFY_g; extern hid_t H5E_CANTREMOVE_g; extern hid_t H5E_CANTCONVERT_g; extern hid_t H5E_BADSIZE_g; # 63 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epublic.h" 2 # 96 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epublic.h" # 115 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Epublic.h" typedef enum H5E_direction_t { H5E_WALK_UPWARD = 0, H5E_WALK_DOWNWARD = 1 } H5E_direction_t; extern "C" { typedef herr_t (*H5E_walk2_t)(unsigned n, const H5E_error2_t *err_desc, void *client_data); typedef herr_t (*H5E_auto2_t)(hid_t estack, void *client_data); hid_t H5Eregister_class(const char *cls_name, const char *lib_name, const char *version); herr_t H5Eunregister_class(hid_t class_id); herr_t H5Eclose_msg(hid_t err_id); hid_t H5Ecreate_msg(hid_t cls, H5E_type_t msg_type, const char *msg); hid_t H5Ecreate_stack(void); hid_t H5Eget_current_stack(void); herr_t H5Eclose_stack(hid_t stack_id); ssize_t H5Eget_class_name(hid_t class_id, char *name, size_t size); herr_t H5Eset_current_stack(hid_t err_stack_id); herr_t H5Epush2(hid_t err_stack, const char *file, const char *func, unsigned line, hid_t cls_id, hid_t maj_id, hid_t min_id, const char *msg, ...); herr_t H5Epop(hid_t err_stack, size_t count); herr_t H5Eprint2(hid_t err_stack, FILE *stream); herr_t H5Ewalk2(hid_t err_stack, H5E_direction_t direction, H5E_walk2_t func, void *client_data); herr_t H5Eget_auto2(hid_t estack_id, H5E_auto2_t *func, void **client_data); herr_t H5Eset_auto2(hid_t estack_id, H5E_auto2_t func, void *client_data); herr_t H5Eclear2(hid_t err_stack); herr_t H5Eauto_is_v2(hid_t err_stack, unsigned *is_stack); ssize_t H5Eget_msg(hid_t msg_id, H5E_type_t *type, char *msg, size_t size); ssize_t H5Eget_num(hid_t error_stack_id); typedef hid_t H5E_major_t; typedef hid_t H5E_minor_t; typedef struct H5E_error1_t { H5E_major_t maj_num; H5E_minor_t min_num; const char *func_name; const char *file_name; unsigned line; const char *desc; } H5E_error1_t; typedef herr_t (*H5E_walk1_t)(int n, H5E_error1_t *err_desc, void *client_data); typedef herr_t (*H5E_auto1_t)(void *client_data); herr_t H5Eclear1(void); herr_t H5Eget_auto1(H5E_auto1_t *func, void **client_data); herr_t H5Epush1(const char *file, const char *func, unsigned line, H5E_major_t maj, H5E_minor_t min, const char *str); herr_t H5Eprint1(FILE *stream); herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data); herr_t H5Ewalk1(H5E_direction_t direction, H5E_walk1_t func, void *client_data); char *H5Eget_major(H5E_major_t maj); char *H5Eget_minor(H5E_minor_t min); } # 29 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Fpublic.h" 1 # 34 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Fpublic.h" # 51 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Fpublic.h" # 64 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Fpublic.h" typedef enum H5F_scope_t { H5F_SCOPE_LOCAL = 0, H5F_SCOPE_GLOBAL = 1 } H5F_scope_t; typedef enum H5F_close_degree_t { H5F_CLOSE_DEFAULT = 0, H5F_CLOSE_WEAK = 1, H5F_CLOSE_SEMI = 2, H5F_CLOSE_STRONG = 3 } H5F_close_degree_t; typedef struct H5F_info_t { hsize_t super_ext_size; struct { hsize_t hdr_size; H5_ih_info_t msgs_info; } sohm; } H5F_info_t; typedef enum H5F_mem_t { H5FD_MEM_NOLIST = -1, H5FD_MEM_DEFAULT = 0, H5FD_MEM_SUPER = 1, H5FD_MEM_BTREE = 2, H5FD_MEM_DRAW = 3, H5FD_MEM_GHEAP = 4, H5FD_MEM_LHEAP = 5, H5FD_MEM_OHDR = 6, H5FD_MEM_NTYPES } H5F_mem_t; typedef enum H5F_libver_t { H5F_LIBVER_EARLIEST, H5F_LIBVER_LATEST } H5F_libver_t; extern "C" { htri_t H5Fis_hdf5(const char *filename); hid_t H5Fcreate(const char *filename, unsigned flags, hid_t create_plist, hid_t access_plist); hid_t H5Fopen(const char *filename, unsigned flags, hid_t access_plist); hid_t H5Freopen(hid_t file_id); herr_t H5Fflush(hid_t object_id, H5F_scope_t scope); herr_t H5Fclose(hid_t file_id); hid_t H5Fget_create_plist(hid_t file_id); hid_t H5Fget_access_plist(hid_t file_id); herr_t H5Fget_intent(hid_t file_id, unsigned * intent); ssize_t H5Fget_obj_count(hid_t file_id, unsigned types); ssize_t H5Fget_obj_ids(hid_t file_id, unsigned types, size_t max_objs, hid_t *obj_id_list); herr_t H5Fget_vfd_handle(hid_t file_id, hid_t fapl, void **file_handle); herr_t H5Fmount(hid_t loc, const char *name, hid_t child, hid_t plist); herr_t H5Funmount(hid_t loc, const char *name); hssize_t H5Fget_freespace(hid_t file_id); herr_t H5Fget_filesize(hid_t file_id, hsize_t *size); ssize_t H5Fget_file_image(hid_t file_id, void * buf_ptr, size_t buf_len); herr_t H5Fget_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); herr_t H5Fset_mdc_config(hid_t file_id, H5AC_cache_config_t * config_ptr); herr_t H5Fget_mdc_hit_rate(hid_t file_id, double * hit_rate_ptr); herr_t H5Fget_mdc_size(hid_t file_id, size_t * max_size_ptr, size_t * min_clean_size_ptr, size_t * cur_size_ptr, int * cur_num_entries_ptr); herr_t H5Freset_mdc_hit_rate_stats(hid_t file_id); ssize_t H5Fget_name(hid_t obj_id, char *name, size_t size); herr_t H5Fget_info(hid_t obj_id, H5F_info_t *bh_info); herr_t H5Fclear_elink_file_cache(hid_t file_id); herr_t H5Fset_mpi_atomicity(hid_t file_id, hbool_t flag); herr_t H5Fget_mpi_atomicity(hid_t file_id, hbool_t *flag); } # 30 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDpublic.h" 1 typedef enum H5F_mem_t H5FD_mem_t; # 93 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDpublic.h" # 107 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDpublic.h" # 121 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDpublic.h" typedef struct H5FD_t H5FD_t; typedef struct H5FD_class_t { const char *name; haddr_t maxaddr; H5F_close_degree_t fc_degree; hsize_t (*sb_size)(H5FD_t *file); herr_t (*sb_encode)(H5FD_t *file, char *name , unsigned char *p ); herr_t (*sb_decode)(H5FD_t *f, const char *name, const unsigned char *p); size_t fapl_size; void * (*fapl_get)(H5FD_t *file); void * (*fapl_copy)(const void *fapl); herr_t (*fapl_free)(void *fapl); size_t dxpl_size; void * (*dxpl_copy)(const void *dxpl); herr_t (*dxpl_free)(void *dxpl); H5FD_t *(*open)(const char *name, unsigned flags, hid_t fapl, haddr_t maxaddr); herr_t (*close)(H5FD_t *file); int (*cmp)(const H5FD_t *f1, const H5FD_t *f2); herr_t (*query)(const H5FD_t *f1, unsigned long *flags); herr_t (*get_type_map)(const H5FD_t *file, H5FD_mem_t *type_map); haddr_t (*alloc)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); herr_t (*free)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); haddr_t (*get_eoa)(const H5FD_t *file, H5FD_mem_t type); herr_t (*set_eoa)(H5FD_t *file, H5FD_mem_t type, haddr_t addr); haddr_t (*get_eof)(const H5FD_t *file); herr_t (*get_handle)(H5FD_t *file, hid_t fapl, void**file_handle); herr_t (*read)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, void *buffer); herr_t (*write)(H5FD_t *file, H5FD_mem_t type, hid_t dxpl, haddr_t addr, size_t size, const void *buffer); herr_t (*flush)(H5FD_t *file, hid_t dxpl_id, unsigned closing); herr_t (*truncate)(H5FD_t *file, hid_t dxpl_id, hbool_t closing); herr_t (*lock)(H5FD_t *file, unsigned char *oid, unsigned lock_type, hbool_t last); herr_t (*unlock)(H5FD_t *file, unsigned char *oid, hbool_t last); H5FD_mem_t fl_map[H5FD_MEM_NTYPES]; } H5FD_class_t; typedef struct H5FD_free_t { haddr_t addr; hsize_t size; struct H5FD_free_t *next; } H5FD_free_t; struct H5FD_t { hid_t driver_id; const H5FD_class_t *cls; unsigned long fileno; unsigned long feature_flags; haddr_t maxaddr; haddr_t base_addr; hsize_t threshold; hsize_t alignment; }; typedef enum { H5FD_FILE_IMAGE_OP_NO_OP, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_SET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_COPY, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_GET, H5FD_FILE_IMAGE_OP_PROPERTY_LIST_CLOSE, H5FD_FILE_IMAGE_OP_FILE_OPEN, H5FD_FILE_IMAGE_OP_FILE_RESIZE, H5FD_FILE_IMAGE_OP_FILE_CLOSE } H5FD_file_image_op_t; typedef struct { void *(*image_malloc)(size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_memcpy)(void *dest, const void *src, size_t size, H5FD_file_image_op_t file_image_op, void *udata); void *(*image_realloc)(void *ptr, size_t size, H5FD_file_image_op_t file_image_op, void *udata); herr_t (*image_free)(void *ptr, H5FD_file_image_op_t file_image_op, void *udata); void *(*udata_copy)(void *udata); herr_t (*udata_free)(void *udata); void *udata; } H5FD_file_image_callbacks_t; extern "C" { hid_t H5FDregister(const H5FD_class_t *cls); herr_t H5FDunregister(hid_t driver_id); H5FD_t *H5FDopen(const char *name, unsigned flags, hid_t fapl_id, haddr_t maxaddr); herr_t H5FDclose(H5FD_t *file); int H5FDcmp(const H5FD_t *f1, const H5FD_t *f2); int H5FDquery(const H5FD_t *f, unsigned long *flags); haddr_t H5FDalloc(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, hsize_t size); herr_t H5FDfree(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, hsize_t size); haddr_t H5FDget_eoa(H5FD_t *file, H5FD_mem_t type); herr_t H5FDset_eoa(H5FD_t *file, H5FD_mem_t type, haddr_t eoa); haddr_t H5FDget_eof(H5FD_t *file); herr_t H5FDget_vfd_handle(H5FD_t *file, hid_t fapl, void**file_handle); herr_t H5FDread(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, void *buf ); herr_t H5FDwrite(H5FD_t *file, H5FD_mem_t type, hid_t dxpl_id, haddr_t addr, size_t size, const void *buf); herr_t H5FDflush(H5FD_t *file, hid_t dxpl_id, unsigned closing); herr_t H5FDtruncate(H5FD_t *file, hid_t dxpl_id, hbool_t closing); } # 31 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Gpublic.h" 1 extern "C" { typedef enum H5G_storage_type_t { H5G_STORAGE_TYPE_UNKNOWN = -1, H5G_STORAGE_TYPE_SYMBOL_TABLE, H5G_STORAGE_TYPE_COMPACT, H5G_STORAGE_TYPE_DENSE } H5G_storage_type_t; typedef struct H5G_info_t { H5G_storage_type_t storage_type; hsize_t nlinks; int64_t max_corder; hbool_t mounted; } H5G_info_t; hid_t H5Gcreate2(hid_t loc_id, const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id); hid_t H5Gcreate_anon(hid_t loc_id, hid_t gcpl_id, hid_t gapl_id); hid_t H5Gopen2(hid_t loc_id, const char *name, hid_t gapl_id); hid_t H5Gget_create_plist(hid_t group_id); herr_t H5Gget_info(hid_t loc_id, H5G_info_t *ginfo); herr_t H5Gget_info_by_name(hid_t loc_id, const char *name, H5G_info_t *ginfo, hid_t lapl_id); herr_t H5Gget_info_by_idx(hid_t loc_id, const char *group_name, H5_index_t idx_type, H5_iter_order_t order, hsize_t n, H5G_info_t *ginfo, hid_t lapl_id); herr_t H5Gclose(hid_t group_id); typedef enum H5G_obj_t { H5G_UNKNOWN = -1, H5G_GROUP, H5G_DATASET, H5G_TYPE, H5G_LINK, H5G_UDLINK, H5G_RESERVED_5, H5G_RESERVED_6, H5G_RESERVED_7 } H5G_obj_t; typedef herr_t (*H5G_iterate_t)(hid_t group, const char *name, void *op_data); typedef struct H5G_stat_t { unsigned long fileno[2]; unsigned long objno[2]; unsigned nlink; H5G_obj_t type; time_t mtime; size_t linklen; H5O_stat_t ohdr; } H5G_stat_t; hid_t H5Gcreate1(hid_t loc_id, const char *name, size_t size_hint); hid_t H5Gopen1(hid_t loc_id, const char *name); herr_t H5Glink(hid_t cur_loc_id, H5L_type_t type, const char *cur_name, const char *new_name); herr_t H5Glink2(hid_t cur_loc_id, const char *cur_name, H5L_type_t type, hid_t new_loc_id, const char *new_name); herr_t H5Gmove(hid_t src_loc_id, const char *src_name, const char *dst_name); herr_t H5Gmove2(hid_t src_loc_id, const char *src_name, hid_t dst_loc_id, const char *dst_name); herr_t H5Gunlink(hid_t loc_id, const char *name); herr_t H5Gget_linkval(hid_t loc_id, const char *name, size_t size, char *buf ); herr_t H5Gset_comment(hid_t loc_id, const char *name, const char *comment); int H5Gget_comment(hid_t loc_id, const char *name, size_t bufsize, char *buf); herr_t H5Giterate(hid_t loc_id, const char *name, int *idx, H5G_iterate_t op, void *op_data); herr_t H5Gget_num_objs(hid_t loc_id, hsize_t *num_objs); herr_t H5Gget_objinfo(hid_t loc_id, const char *name, hbool_t follow_link, H5G_stat_t *statbuf ); ssize_t H5Gget_objname_by_idx(hid_t loc_id, hsize_t idx, char* name, size_t size); H5G_obj_t H5Gget_objtype_by_idx(hid_t loc_id, hsize_t idx); } # 32 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5MMpublic.h" 1 typedef void *(*H5MM_allocate_t)(size_t size, void *alloc_info); typedef void (*H5MM_free_t)(void *mem, void *free_info); extern "C" { } # 35 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ppublic.h" 1 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Zpublic.h" 1 typedef int H5Z_filter_t; # 45 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Zpublic.h" # 89 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Zpublic.h" typedef enum H5Z_SO_scale_type_t { H5Z_SO_FLOAT_DSCALE = 0, H5Z_SO_FLOAT_ESCALE = 1, H5Z_SO_INT = 2 } H5Z_SO_scale_type_t; typedef enum H5Z_EDC_t { H5Z_ERROR_EDC = -1, H5Z_DISABLE_EDC = 0, H5Z_ENABLE_EDC = 1, H5Z_NO_EDC = 2 } H5Z_EDC_t; typedef enum H5Z_cb_return_t { H5Z_CB_ERROR = -1, H5Z_CB_FAIL = 0, H5Z_CB_CONT = 1, H5Z_CB_NO = 2 } H5Z_cb_return_t; typedef H5Z_cb_return_t (*H5Z_filter_func_t)(H5Z_filter_t filter, void* buf, size_t buf_size, void* op_data); typedef struct H5Z_cb_t { H5Z_filter_func_t func; void* op_data; } H5Z_cb_t; extern "C" { typedef htri_t (*H5Z_can_apply_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); typedef herr_t (*H5Z_set_local_func_t)(hid_t dcpl_id, hid_t type_id, hid_t space_id); typedef size_t (*H5Z_func_t)(unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[], size_t nbytes, size_t *buf_size, void **buf); typedef struct H5Z_class2_t { int version; H5Z_filter_t id; unsigned encoder_present; unsigned decoder_present; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class2_t; herr_t H5Zregister(const void *cls); herr_t H5Zunregister(H5Z_filter_t id); htri_t H5Zfilter_avail(H5Z_filter_t id); herr_t H5Zget_filter_info(H5Z_filter_t filter, unsigned int *filter_config_flags); typedef struct H5Z_class1_t { H5Z_filter_t id; const char *name; H5Z_can_apply_func_t can_apply; H5Z_set_local_func_t set_local; H5Z_func_t filter; } H5Z_class1_t; } # 37 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ppublic.h" 2 # 50 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ppublic.h" # 72 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ppublic.h" # 90 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Ppublic.h" extern "C" { typedef herr_t (*H5P_cls_create_func_t)(hid_t prop_id, void *create_data); typedef herr_t (*H5P_cls_copy_func_t)(hid_t new_prop_id, hid_t old_prop_id, void *copy_data); typedef herr_t (*H5P_cls_close_func_t)(hid_t prop_id, void *close_data); typedef herr_t (*H5P_prp_cb1_t)(const char *name, size_t size, void *value); typedef herr_t (*H5P_prp_cb2_t)(hid_t prop_id, const char *name, size_t size, void *value); typedef H5P_prp_cb1_t H5P_prp_create_func_t; typedef H5P_prp_cb2_t H5P_prp_set_func_t; typedef H5P_prp_cb2_t H5P_prp_get_func_t; typedef H5P_prp_cb2_t H5P_prp_delete_func_t; typedef H5P_prp_cb1_t H5P_prp_copy_func_t; typedef int (*H5P_prp_compare_func_t)(const void *value1, const void *value2, size_t size); typedef H5P_prp_cb1_t H5P_prp_close_func_t; typedef herr_t (*H5P_iterate_t)(hid_t id, const char *name, void *iter_data); typedef enum H5D_mpio_actual_chunk_opt_mode_t { H5D_MPIO_NO_CHUNK_OPTIMIZATION = 0, H5D_MPIO_LINK_CHUNK, H5D_MPIO_MULTI_CHUNK } H5D_mpio_actual_chunk_opt_mode_t; typedef enum H5D_mpio_actual_io_mode_t { H5D_MPIO_NO_COLLECTIVE = 0x0, H5D_MPIO_CHUNK_INDEPENDENT = 0x1, H5D_MPIO_CHUNK_COLLECTIVE = 0x2, H5D_MPIO_CHUNK_MIXED = 0x1 | 0x2, H5D_MPIO_CONTIGUOUS_COLLECTIVE = 0x4 } H5D_mpio_actual_io_mode_t; typedef enum H5D_mpio_no_collective_cause_t { H5D_MPIO_COLLECTIVE = 0x00, H5D_MPIO_SET_INDEPENDENT = 0x01, H5D_MPIO_DATATYPE_CONVERSION = 0x02, H5D_MPIO_DATA_TRANSFORMS = 0x04, H5D_MPIO_SET_MPIPOSIX = 0x08, H5D_MPIO_NOT_SIMPLE_OR_SCALAR_DATASPACES = 0x10, H5D_MPIO_POINT_SELECTIONS = 0x20, H5D_MPIO_NOT_CONTIGUOUS_OR_CHUNKED_DATASET = 0x40, H5D_MPIO_FILTERS = 0x80 } H5D_mpio_no_collective_cause_t; extern hid_t H5P_CLS_ROOT_g; extern hid_t H5P_CLS_OBJECT_CREATE_g; extern hid_t H5P_CLS_FILE_CREATE_g; extern hid_t H5P_CLS_FILE_ACCESS_g; extern hid_t H5P_CLS_DATASET_CREATE_g; extern hid_t H5P_CLS_DATASET_ACCESS_g; extern hid_t H5P_CLS_DATASET_XFER_g; extern hid_t H5P_CLS_FILE_MOUNT_g; extern hid_t H5P_CLS_GROUP_CREATE_g; extern hid_t H5P_CLS_GROUP_ACCESS_g; extern hid_t H5P_CLS_DATATYPE_CREATE_g; extern hid_t H5P_CLS_DATATYPE_ACCESS_g; extern hid_t H5P_CLS_STRING_CREATE_g; extern hid_t H5P_CLS_ATTRIBUTE_CREATE_g; extern hid_t H5P_CLS_OBJECT_COPY_g; extern hid_t H5P_CLS_LINK_CREATE_g; extern hid_t H5P_CLS_LINK_ACCESS_g; extern hid_t H5P_LST_FILE_CREATE_g; extern hid_t H5P_LST_FILE_ACCESS_g; extern hid_t H5P_LST_DATASET_CREATE_g; extern hid_t H5P_LST_DATASET_ACCESS_g; extern hid_t H5P_LST_DATASET_XFER_g; extern hid_t H5P_LST_FILE_MOUNT_g; extern hid_t H5P_LST_GROUP_CREATE_g; extern hid_t H5P_LST_GROUP_ACCESS_g; extern hid_t H5P_LST_DATATYPE_CREATE_g; extern hid_t H5P_LST_DATATYPE_ACCESS_g; extern hid_t H5P_LST_ATTRIBUTE_CREATE_g; extern hid_t H5P_LST_OBJECT_COPY_g; extern hid_t H5P_LST_LINK_CREATE_g; extern hid_t H5P_LST_LINK_ACCESS_g; hid_t H5Pcreate_class(hid_t parent, const char *name, H5P_cls_create_func_t cls_create, void *create_data, H5P_cls_copy_func_t cls_copy, void *copy_data, H5P_cls_close_func_t cls_close, void *close_data); char *H5Pget_class_name(hid_t pclass_id); hid_t H5Pcreate(hid_t cls_id); herr_t H5Pregister2(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); herr_t H5Pinsert2(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_compare_func_t prp_cmp, H5P_prp_close_func_t prp_close); herr_t H5Pset(hid_t plist_id, const char *name, void *value); htri_t H5Pexist(hid_t plist_id, const char *name); herr_t H5Pget_size(hid_t id, const char *name, size_t *size); herr_t H5Pget_nprops(hid_t id, size_t *nprops); hid_t H5Pget_class(hid_t plist_id); hid_t H5Pget_class_parent(hid_t pclass_id); herr_t H5Pget(hid_t plist_id, const char *name, void * value); htri_t H5Pequal(hid_t id1, hid_t id2); htri_t H5Pisa_class(hid_t plist_id, hid_t pclass_id); int H5Piterate(hid_t id, int *idx, H5P_iterate_t iter_func, void *iter_data); herr_t H5Pcopy_prop(hid_t dst_id, hid_t src_id, const char *name); herr_t H5Premove(hid_t plist_id, const char *name); herr_t H5Punregister(hid_t pclass_id, const char *name); herr_t H5Pclose_class(hid_t plist_id); herr_t H5Pclose(hid_t plist_id); hid_t H5Pcopy(hid_t plist_id); herr_t H5Pset_attr_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); herr_t H5Pget_attr_phase_change(hid_t plist_id, unsigned *max_compact, unsigned *min_dense); herr_t H5Pset_attr_creation_order(hid_t plist_id, unsigned crt_order_flags); herr_t H5Pget_attr_creation_order(hid_t plist_id, unsigned *crt_order_flags); herr_t H5Pset_obj_track_times(hid_t plist_id, hbool_t track_times); herr_t H5Pget_obj_track_times(hid_t plist_id, hbool_t *track_times); herr_t H5Pmodify_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int cd_values[ ]); herr_t H5Pset_filter(hid_t plist_id, H5Z_filter_t filter, unsigned int flags, size_t cd_nelmts, const unsigned int c_values[]); int H5Pget_nfilters(hid_t plist_id); H5Z_filter_t H5Pget_filter2(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[], unsigned *filter_config ); herr_t H5Pget_filter_by_id2(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] , unsigned *filter_config ); htri_t H5Pall_filters_avail(hid_t plist_id); herr_t H5Premove_filter(hid_t plist_id, H5Z_filter_t filter); herr_t H5Pset_deflate(hid_t plist_id, unsigned aggression); herr_t H5Pset_fletcher32(hid_t plist_id); herr_t H5Pget_version(hid_t plist_id, unsigned *boot , unsigned *freelist , unsigned *stab , unsigned *shhdr ); herr_t H5Pset_userblock(hid_t plist_id, hsize_t size); herr_t H5Pget_userblock(hid_t plist_id, hsize_t *size); herr_t H5Pset_sizes(hid_t plist_id, size_t sizeof_addr, size_t sizeof_size); herr_t H5Pget_sizes(hid_t plist_id, size_t *sizeof_addr , size_t *sizeof_size ); herr_t H5Pset_sym_k(hid_t plist_id, unsigned ik, unsigned lk); herr_t H5Pget_sym_k(hid_t plist_id, unsigned *ik , unsigned *lk ); herr_t H5Pset_istore_k(hid_t plist_id, unsigned ik); herr_t H5Pget_istore_k(hid_t plist_id, unsigned *ik ); herr_t H5Pset_shared_mesg_nindexes(hid_t plist_id, unsigned nindexes); herr_t H5Pget_shared_mesg_nindexes(hid_t plist_id, unsigned *nindexes); herr_t H5Pset_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned mesg_type_flags, unsigned min_mesg_size); herr_t H5Pget_shared_mesg_index(hid_t plist_id, unsigned index_num, unsigned *mesg_type_flags, unsigned *min_mesg_size); herr_t H5Pset_shared_mesg_phase_change(hid_t plist_id, unsigned max_list, unsigned min_btree); herr_t H5Pget_shared_mesg_phase_change(hid_t plist_id, unsigned *max_list, unsigned *min_btree); herr_t H5Pset_alignment(hid_t fapl_id, hsize_t threshold, hsize_t alignment); herr_t H5Pget_alignment(hid_t fapl_id, hsize_t *threshold , hsize_t *alignment ); herr_t H5Pset_driver(hid_t plist_id, hid_t driver_id, const void *driver_info); hid_t H5Pget_driver(hid_t plist_id); void *H5Pget_driver_info(hid_t plist_id); herr_t H5Pset_family_offset(hid_t fapl_id, hsize_t offset); herr_t H5Pget_family_offset(hid_t fapl_id, hsize_t *offset); herr_t H5Pset_multi_type(hid_t fapl_id, H5FD_mem_t type); herr_t H5Pget_multi_type(hid_t fapl_id, H5FD_mem_t *type); herr_t H5Pset_cache(hid_t plist_id, int mdc_nelmts, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); herr_t H5Pget_cache(hid_t plist_id, int *mdc_nelmts, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0); herr_t H5Pset_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); herr_t H5Pget_mdc_config(hid_t plist_id, H5AC_cache_config_t * config_ptr); herr_t H5Pset_gc_references(hid_t fapl_id, unsigned gc_ref); herr_t H5Pget_gc_references(hid_t fapl_id, unsigned *gc_ref ); herr_t H5Pset_fclose_degree(hid_t fapl_id, H5F_close_degree_t degree); herr_t H5Pget_fclose_degree(hid_t fapl_id, H5F_close_degree_t *degree); herr_t H5Pset_meta_block_size(hid_t fapl_id, hsize_t size); herr_t H5Pget_meta_block_size(hid_t fapl_id, hsize_t *size ); herr_t H5Pset_sieve_buf_size(hid_t fapl_id, size_t size); herr_t H5Pget_sieve_buf_size(hid_t fapl_id, size_t *size ); herr_t H5Pset_small_data_block_size(hid_t fapl_id, hsize_t size); herr_t H5Pget_small_data_block_size(hid_t fapl_id, hsize_t *size ); herr_t H5Pset_libver_bounds(hid_t plist_id, H5F_libver_t low, H5F_libver_t high); herr_t H5Pget_libver_bounds(hid_t plist_id, H5F_libver_t *low, H5F_libver_t *high); herr_t H5Pset_elink_file_cache_size(hid_t plist_id, unsigned efc_size); herr_t H5Pget_elink_file_cache_size(hid_t plist_id, unsigned *efc_size); herr_t H5Pset_file_image(hid_t fapl_id, void *buf_ptr, size_t buf_len); herr_t H5Pget_file_image(hid_t fapl_id, void **buf_ptr_ptr, size_t *buf_len_ptr); herr_t H5Pset_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); herr_t H5Pget_file_image_callbacks(hid_t fapl_id, H5FD_file_image_callbacks_t *callbacks_ptr); herr_t H5Pset_layout(hid_t plist_id, H5D_layout_t layout); H5D_layout_t H5Pget_layout(hid_t plist_id); herr_t H5Pset_chunk(hid_t plist_id, int ndims, const hsize_t dim[ ]); int H5Pget_chunk(hid_t plist_id, int max_ndims, hsize_t dim[] ); herr_t H5Pset_external(hid_t plist_id, const char *name, off_t offset, hsize_t size); int H5Pget_external_count(hid_t plist_id); herr_t H5Pget_external(hid_t plist_id, unsigned idx, size_t name_size, char *name , off_t *offset , hsize_t *size ); herr_t H5Pset_szip(hid_t plist_id, unsigned options_mask, unsigned pixels_per_block); herr_t H5Pset_shuffle(hid_t plist_id); herr_t H5Pset_nbit(hid_t plist_id); herr_t H5Pset_scaleoffset(hid_t plist_id, H5Z_SO_scale_type_t scale_type, int scale_factor); herr_t H5Pset_fill_value(hid_t plist_id, hid_t type_id, const void *value); herr_t H5Pget_fill_value(hid_t plist_id, hid_t type_id, void *value ); herr_t H5Pfill_value_defined(hid_t plist, H5D_fill_value_t *status); herr_t H5Pset_alloc_time(hid_t plist_id, H5D_alloc_time_t alloc_time); herr_t H5Pget_alloc_time(hid_t plist_id, H5D_alloc_time_t *alloc_time ); herr_t H5Pset_fill_time(hid_t plist_id, H5D_fill_time_t fill_time); herr_t H5Pget_fill_time(hid_t plist_id, H5D_fill_time_t *fill_time ); herr_t H5Pset_chunk_cache(hid_t dapl_id, size_t rdcc_nslots, size_t rdcc_nbytes, double rdcc_w0); herr_t H5Pget_chunk_cache(hid_t dapl_id, size_t *rdcc_nslots , size_t *rdcc_nbytes , double *rdcc_w0 ); herr_t H5Pset_data_transform(hid_t plist_id, const char* expression); ssize_t H5Pget_data_transform(hid_t plist_id, char* expression , size_t size); herr_t H5Pset_buffer(hid_t plist_id, size_t size, void *tconv, void *bkg); size_t H5Pget_buffer(hid_t plist_id, void **tconv , void **bkg ); herr_t H5Pset_preserve(hid_t plist_id, hbool_t status); int H5Pget_preserve(hid_t plist_id); herr_t H5Pset_edc_check(hid_t plist_id, H5Z_EDC_t check); H5Z_EDC_t H5Pget_edc_check(hid_t plist_id); herr_t H5Pset_filter_callback(hid_t plist_id, H5Z_filter_func_t func, void* op_data); herr_t H5Pset_btree_ratios(hid_t plist_id, double left, double middle, double right); herr_t H5Pget_btree_ratios(hid_t plist_id, double *left , double *middle , double *right ); herr_t H5Pset_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t alloc_func, void *alloc_info, H5MM_free_t free_func, void *free_info); herr_t H5Pget_vlen_mem_manager(hid_t plist_id, H5MM_allocate_t *alloc_func, void **alloc_info, H5MM_free_t *free_func, void **free_info); herr_t H5Pset_hyper_vector_size(hid_t fapl_id, size_t size); herr_t H5Pget_hyper_vector_size(hid_t fapl_id, size_t *size ); herr_t H5Pset_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t op, void* operate_data); herr_t H5Pget_type_conv_cb(hid_t dxpl_id, H5T_conv_except_func_t *op, void** operate_data); herr_t H5Pget_mpio_actual_chunk_opt_mode(hid_t plist_id, H5D_mpio_actual_chunk_opt_mode_t *actual_chunk_opt_mode); herr_t H5Pget_mpio_actual_io_mode(hid_t plist_id, H5D_mpio_actual_io_mode_t *actual_io_mode); herr_t H5Pget_mpio_no_collective_cause(hid_t plist_id, uint32_t *local_no_collective_cause, uint32_t *global_no_collective_cause); herr_t H5Pset_create_intermediate_group(hid_t plist_id, unsigned crt_intmd); herr_t H5Pget_create_intermediate_group(hid_t plist_id, unsigned *crt_intmd ); herr_t H5Pset_local_heap_size_hint(hid_t plist_id, size_t size_hint); herr_t H5Pget_local_heap_size_hint(hid_t plist_id, size_t *size_hint ); herr_t H5Pset_link_phase_change(hid_t plist_id, unsigned max_compact, unsigned min_dense); herr_t H5Pget_link_phase_change(hid_t plist_id, unsigned *max_compact , unsigned *min_dense ); herr_t H5Pset_est_link_info(hid_t plist_id, unsigned est_num_entries, unsigned est_name_len); herr_t H5Pget_est_link_info(hid_t plist_id, unsigned *est_num_entries , unsigned *est_name_len ); herr_t H5Pset_link_creation_order(hid_t plist_id, unsigned crt_order_flags); herr_t H5Pget_link_creation_order(hid_t plist_id, unsigned *crt_order_flags ); herr_t H5Pset_char_encoding(hid_t plist_id, H5T_cset_t encoding); herr_t H5Pget_char_encoding(hid_t plist_id, H5T_cset_t *encoding ); herr_t H5Pset_nlinks(hid_t plist_id, size_t nlinks); herr_t H5Pget_nlinks(hid_t plist_id, size_t *nlinks); herr_t H5Pset_elink_prefix(hid_t plist_id, const char *prefix); ssize_t H5Pget_elink_prefix(hid_t plist_id, char *prefix, size_t size); hid_t H5Pget_elink_fapl(hid_t lapl_id); herr_t H5Pset_elink_fapl(hid_t lapl_id, hid_t fapl_id); herr_t H5Pset_elink_acc_flags(hid_t lapl_id, unsigned flags); herr_t H5Pget_elink_acc_flags(hid_t lapl_id, unsigned *flags); herr_t H5Pset_elink_cb(hid_t lapl_id, H5L_elink_traverse_t func, void *op_data); herr_t H5Pget_elink_cb(hid_t lapl_id, H5L_elink_traverse_t *func, void **op_data); herr_t H5Pset_copy_object(hid_t plist_id, unsigned crt_intmd); herr_t H5Pget_copy_object(hid_t plist_id, unsigned *crt_intmd ); herr_t H5Padd_merge_committed_dtype_path(hid_t plist_id, const char *path); herr_t H5Pfree_merge_committed_dtype_paths(hid_t plist_id); herr_t H5Pset_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t func, void *op_data); herr_t H5Pget_mcdt_search_cb(hid_t plist_id, H5O_mcdt_search_cb_t *func, void **op_data); herr_t H5Pregister1(hid_t cls_id, const char *name, size_t size, void *def_value, H5P_prp_create_func_t prp_create, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_del, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); herr_t H5Pinsert1(hid_t plist_id, const char *name, size_t size, void *value, H5P_prp_set_func_t prp_set, H5P_prp_get_func_t prp_get, H5P_prp_delete_func_t prp_delete, H5P_prp_copy_func_t prp_copy, H5P_prp_close_func_t prp_close); H5Z_filter_t H5Pget_filter1(hid_t plist_id, unsigned filter, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[]); herr_t H5Pget_filter_by_id1(hid_t plist_id, H5Z_filter_t id, unsigned int *flags , size_t *cd_nelmts , unsigned cd_values[] , size_t namelen, char name[] ); } # 37 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Rpublic.h" 1 typedef enum { H5R_BADTYPE = (-1), H5R_OBJECT, H5R_DATASET_REGION, H5R_MAXTYPE } H5R_type_t; typedef haddr_t hobj_ref_t; typedef unsigned char hdset_reg_ref_t[(sizeof(haddr_t)+4)]; extern "C" { herr_t H5Rcreate(void *ref, hid_t loc_id, const char *name, H5R_type_t ref_type, hid_t space_id); hid_t H5Rdereference(hid_t dataset, H5R_type_t ref_type, const void *ref); hid_t H5Rget_region(hid_t dataset, H5R_type_t ref_type, const void *ref); herr_t H5Rget_obj_type2(hid_t id, H5R_type_t ref_type, const void *_ref, H5O_type_t *obj_type); ssize_t H5Rget_name(hid_t loc_id, H5R_type_t ref_type, const void *ref, char *name , size_t size); H5G_obj_t H5Rget_obj_type1(hid_t id, H5R_type_t ref_type, const void *_ref); } # 38 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Spublic.h" 1 typedef enum H5S_class_t { H5S_NO_CLASS = -1, H5S_SCALAR = 0, H5S_SIMPLE = 1, H5S_NULL = 2 } H5S_class_t; typedef enum H5S_seloper_t { H5S_SELECT_NOOP = -1, H5S_SELECT_SET = 0, H5S_SELECT_OR, H5S_SELECT_AND, H5S_SELECT_XOR, H5S_SELECT_NOTB, H5S_SELECT_NOTA, H5S_SELECT_APPEND, H5S_SELECT_PREPEND, H5S_SELECT_INVALID } H5S_seloper_t; typedef enum { H5S_SEL_ERROR = -1, H5S_SEL_NONE = 0, H5S_SEL_POINTS = 1, H5S_SEL_HYPERSLABS = 2, H5S_SEL_ALL = 3, H5S_SEL_N }H5S_sel_type; extern "C" { hid_t H5Screate(H5S_class_t type); hid_t H5Screate_simple(int rank, const hsize_t dims[], const hsize_t maxdims[]); herr_t H5Sset_extent_simple(hid_t space_id, int rank, const hsize_t dims[], const hsize_t max[]); hid_t H5Scopy(hid_t space_id); herr_t H5Sclose(hid_t space_id); herr_t H5Sencode(hid_t obj_id, void *buf, size_t *nalloc); hid_t H5Sdecode(const void *buf); hssize_t H5Sget_simple_extent_npoints(hid_t space_id); int H5Sget_simple_extent_ndims(hid_t space_id); int H5Sget_simple_extent_dims(hid_t space_id, hsize_t dims[], hsize_t maxdims[]); htri_t H5Sis_simple(hid_t space_id); hssize_t H5Sget_select_npoints(hid_t spaceid); herr_t H5Sselect_hyperslab(hid_t space_id, H5S_seloper_t op, const hsize_t start[], const hsize_t _stride[], const hsize_t count[], const hsize_t _block[]); # 128 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5Spublic.h" herr_t H5Sselect_elements(hid_t space_id, H5S_seloper_t op, size_t num_elem, const hsize_t *coord); H5S_class_t H5Sget_simple_extent_type(hid_t space_id); herr_t H5Sset_extent_none(hid_t space_id); herr_t H5Sextent_copy(hid_t dst_id,hid_t src_id); htri_t H5Sextent_equal(hid_t sid1, hid_t sid2); herr_t H5Sselect_all(hid_t spaceid); herr_t H5Sselect_none(hid_t spaceid); herr_t H5Soffset_simple(hid_t space_id, const hssize_t *offset); htri_t H5Sselect_valid(hid_t spaceid); hssize_t H5Sget_select_hyper_nblocks(hid_t spaceid); hssize_t H5Sget_select_elem_npoints(hid_t spaceid); herr_t H5Sget_select_hyper_blocklist(hid_t spaceid, hsize_t startblock, hsize_t numblocks, hsize_t buf[ ]); herr_t H5Sget_select_elem_pointlist(hid_t spaceid, hsize_t startpoint, hsize_t numpoints, hsize_t buf[ ]); herr_t H5Sget_select_bounds(hid_t spaceid, hsize_t start[], hsize_t end[]); H5S_sel_type H5Sget_select_type(hid_t spaceid); } # 39 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDcore.h" 1 extern "C" { hid_t H5FD_core_init(void); void H5FD_core_term(void); herr_t H5Pset_fapl_core(hid_t fapl_id, size_t increment, hbool_t backing_store); herr_t H5Pget_fapl_core(hid_t fapl_id, size_t *increment , hbool_t *backing_store ); } # 44 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDfamily.h" 1 extern "C" { hid_t H5FD_family_init(void); void H5FD_family_term(void); herr_t H5Pset_fapl_family(hid_t fapl_id, hsize_t memb_size, hid_t memb_fapl_id); herr_t H5Pget_fapl_family(hid_t fapl_id, hsize_t *memb_size , hid_t *memb_fapl_id ); } # 45 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDlog.h" 1 # 55 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDlog.h" extern "C" { hid_t H5FD_log_init(void); void H5FD_log_term(void); herr_t H5Pset_fapl_log(hid_t fapl_id, const char *logfile, unsigned long long flags, size_t buf_size); } # 46 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmpi.h" 1 typedef enum H5FD_mpio_xfer_t { H5FD_MPIO_INDEPENDENT = 0, H5FD_MPIO_COLLECTIVE } H5FD_mpio_xfer_t; typedef enum H5FD_mpio_chunk_opt_t { H5FD_MPIO_CHUNK_DEFAULT = 0, H5FD_MPIO_CHUNK_ONE_IO, H5FD_MPIO_CHUNK_MULTI_IO } H5FD_mpio_chunk_opt_t; typedef enum H5FD_mpio_collective_opt_t { H5FD_MPIO_COLLECTIVE_IO = 0, H5FD_MPIO_INDIVIDUAL_IO } H5FD_mpio_collective_opt_t; # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmpio.h" 1 extern "C" { hid_t H5FD_mpio_init(void); void H5FD_mpio_term(void); herr_t H5Pset_fapl_mpio(hid_t fapl_id, MPI_Comm comm, MPI_Info info); herr_t H5Pget_fapl_mpio(hid_t fapl_id, MPI_Comm *comm , MPI_Info *info ); herr_t H5Pset_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t xfer_mode); herr_t H5Pget_dxpl_mpio(hid_t dxpl_id, H5FD_mpio_xfer_t *xfer_mode ); herr_t H5Pset_dxpl_mpio_collective_opt(hid_t dxpl_id, H5FD_mpio_collective_opt_t opt_mode); herr_t H5Pset_dxpl_mpio_chunk_opt(hid_t dxpl_id, H5FD_mpio_chunk_opt_t opt_mode); herr_t H5Pset_dxpl_mpio_chunk_opt_num(hid_t dxpl_id, unsigned num_chunk_per_proc); herr_t H5Pset_dxpl_mpio_chunk_opt_ratio(hid_t dxpl_id, unsigned percent_num_proc_per_chunk); } # 60 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmpi.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmpiposix.h" 1 extern "C" { hid_t H5FD_mpiposix_init(void); void H5FD_mpiposix_term(void); herr_t H5Pset_fapl_mpiposix(hid_t fapl_id, MPI_Comm comm, hbool_t use_gpfs); herr_t H5Pget_fapl_mpiposix(hid_t fapl_id, MPI_Comm *comm , hbool_t *use_gpfs ); } # 61 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmpi.h" 2 # 47 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDmulti.h" 1 extern "C" { hid_t H5FD_multi_init(void); void H5FD_multi_term(void); herr_t H5Pset_fapl_multi(hid_t fapl_id, const H5FD_mem_t *memb_map, const hid_t *memb_fapl, const char * const *memb_name, const haddr_t *memb_addr, hbool_t relax); herr_t H5Pget_fapl_multi(hid_t fapl_id, H5FD_mem_t *memb_map , hid_t *memb_fapl , char **memb_name , haddr_t *memb_addr , hbool_t *relax ); herr_t H5Pset_fapl_split(hid_t fapl, const char *meta_ext, hid_t meta_plist_id, const char *raw_ext, hid_t raw_plist_id); } # 48 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDsec2.h" 1 extern "C" { hid_t H5FD_sec2_init(void); void H5FD_sec2_term(void); herr_t H5Pset_fapl_sec2(hid_t fapl_id); } # 49 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDstdio.h" 1 extern "C" { hid_t H5FD_stdio_init(void); void H5FD_stdio_term(void); herr_t H5Pset_fapl_stdio(hid_t fapl_id); } # 50 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 1 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDdirect.h" 1 # 56 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/H5FDdirect.h" # 54 "/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include/hdf5.h" 2 # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['hdf5.h'] in ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx Checking for functions [H5Pset_fapl_mpio] in library ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char H5Pset_fapl_mpio(); static void _check_H5Pset_fapl_mpio() { H5Pset_fapl_mpio(); } #ifdef __cplusplus } #endif int main() { _check_H5Pset_fapl_mpio();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBHDF5HL_FORTRAN" to "1" Defined "HAVE_LIBHDF5_FORTRAN" to "1" Defined "HAVE_LIBHDF5_HL" to "1" Defined "HAVE_LIBHDF5" to "1" Popping language Cxx Defined "HAVE_H5PSET_FAPL_MPIO" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.hdf5(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.hdf5(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.netcdf(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional netcdf Checking for library in Compiler specific search NETCDF: [] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [nccreate] in library [] ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char nccreate(); static void _check_nccreate() { nccreate(); } #ifdef __cplusplus } #endif int main() { _check_nccreate();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Checking for headers Compiler specific search NETCDF: ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['netcdf.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include', '/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 1 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 2 # 1 "/usr/include/errno.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 30 "/usr/include/errno.h" 2 3 extern "C" { # 1 "/usr/include/bits/errno.h" 1 3 # 1 "/usr/include/linux/errno.h" 1 3 # 1 "/usr/include/asm/errno.h" 1 3 # 1 "/usr/include/asm-generic/errno.h" 1 3 # 1 "/usr/include/asm-generic/errno-base.h" 1 3 # 38 "/usr/include/asm-generic/errno-base.h" 3 # 5 "/usr/include/asm-generic/errno.h" 2 3 # 29 "/usr/include/asm-generic/errno.h" 3 # 96 "/usr/include/asm-generic/errno.h" 3 # 104 "/usr/include/asm-generic/errno.h" 3 # 2 "/usr/include/asm/errno.h" 2 3 # 5 "/usr/include/linux/errno.h" 2 3 # 26 "/usr/include/bits/errno.h" 2 3 extern int *__errno_location (void) throw () __attribute__ ((__const__)); # 37 "/usr/include/errno.h" 2 3 extern char *program_invocation_name, *program_invocation_short_name; } typedef int error_t; # 17 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 2 typedef int nc_type; extern "C" { # 51 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 81 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 111 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 196 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 319 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 336 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 359 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 374 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 396 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 418 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 450 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern const char * nc_inq_libvers(void); extern const char * nc_strerror(int ncerr); extern int nc__create(const char *path, int cmode, size_t initialsz, size_t *chunksizehintp, int *ncidp); extern int nc_create(const char *path, int cmode, int *ncidp); extern int nc__open(const char *path, int mode, size_t *chunksizehintp, int *ncidp); extern int nc_open(const char *path, int mode, int *ncidp); extern int nc_inq_path(int ncid, size_t *pathlen, char *path); extern int nc_inq_ncid(int ncid, const char *name, int *grp_ncid); extern int nc_inq_grps(int ncid, int *numgrps, int *ncids); extern int nc_inq_grpname(int ncid, char *name); extern int nc_inq_grpname_full(int ncid, size_t *lenp, char *full_name); extern int nc_inq_grpname_len(int ncid, size_t *lenp); extern int nc_inq_grp_parent(int ncid, int *parent_ncid); extern int nc_inq_grp_ncid(int ncid, const char *grp_name, int *grp_ncid); extern int nc_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid); extern int nc_inq_varids(int ncid, int *nvars, int *varids); extern int nc_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents); extern int nc_inq_typeids(int ncid, int *ntypes, int *typeids); extern int nc_inq_type_equal(int ncid1, nc_type typeid1, int ncid2, nc_type typeid2, int *equal); extern int nc_def_grp(int parent_ncid, const char *name, int *new_ncid); extern int nc_rename_grp(int grpid, const char *name); extern int nc_def_compound(int ncid, size_t size, const char *name, nc_type *typeidp); extern int nc_insert_compound(int ncid, nc_type xtype, const char *name, size_t offset, nc_type field_typeid); extern int nc_insert_array_compound(int ncid, nc_type xtype, const char *name, size_t offset, nc_type field_typeid, int ndims, const int *dim_sizes); extern int nc_inq_type(int ncid, nc_type xtype, char *name, size_t *size); extern int nc_inq_typeid(int ncid, const char *name, nc_type *typeidp); extern int nc_inq_compound(int ncid, nc_type xtype, char *name, size_t *sizep, size_t *nfieldsp); extern int nc_inq_compound_name(int ncid, nc_type xtype, char *name); extern int nc_inq_compound_size(int ncid, nc_type xtype, size_t *sizep); extern int nc_inq_compound_nfields(int ncid, nc_type xtype, size_t *nfieldsp); extern int nc_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name, size_t *offsetp, nc_type *field_typeidp, int *ndimsp, int *dim_sizesp); extern int nc_inq_compound_fieldname(int ncid, nc_type xtype, int fieldid, char *name); extern int nc_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name, int *fieldidp); extern int nc_inq_compound_fieldoffset(int ncid, nc_type xtype, int fieldid, size_t *offsetp); extern int nc_inq_compound_fieldtype(int ncid, nc_type xtype, int fieldid, nc_type *field_typeidp); extern int nc_inq_compound_fieldndims(int ncid, nc_type xtype, int fieldid, int *ndimsp); extern int nc_inq_compound_fielddim_sizes(int ncid, nc_type xtype, int fieldid, int *dim_sizes); typedef struct { size_t len; void *p; } nc_vlen_t; extern int nc_def_vlen(int ncid, const char *name, nc_type base_typeid, nc_type *xtypep); extern int nc_inq_vlen(int ncid, nc_type xtype, char *name, size_t *datum_sizep, nc_type *base_nc_typep); extern int nc_free_vlen(nc_vlen_t *vl); extern int nc_free_vlens(size_t len, nc_vlen_t vlens[]); extern int nc_put_vlen_element(int ncid, int typeid1, void *vlen_element, size_t len, const void *data); extern int nc_get_vlen_element(int ncid, int typeid1, const void *vlen_element, size_t *len, void *data); extern int nc_free_string(size_t len, char **data); extern int nc_inq_user_type(int ncid, nc_type xtype, char *name, size_t *size, nc_type *base_nc_typep, size_t *nfieldsp, int *classp); extern int nc_put_att(int ncid, int varid, const char *name, nc_type xtype, size_t len, const void *op); extern int nc_get_att(int ncid, int varid, const char *name, void *ip); extern int nc_def_enum(int ncid, nc_type base_typeid, const char *name, nc_type *typeidp); extern int nc_insert_enum(int ncid, nc_type xtype, const char *name, const void *value); extern int nc_inq_enum(int ncid, nc_type xtype, char *name, nc_type *base_nc_typep, size_t *base_sizep, size_t *num_membersp); extern int nc_inq_enum_member(int ncid, nc_type xtype, int idx, char *name, void *value); extern int nc_inq_enum_ident(int ncid, nc_type xtype, long long value, char *identifier); extern int nc_def_opaque(int ncid, size_t size, const char *name, nc_type *xtypep); extern int nc_inq_opaque(int ncid, nc_type xtype, char *name, size_t *sizep); extern int nc_put_var(int ncid, int varid, const void *op); extern int nc_get_var(int ncid, int varid, void *ip); extern int nc_put_var1(int ncid, int varid, const size_t *indexp, const void *op); extern int nc_get_var1(int ncid, int varid, const size_t *indexp, void *ip); extern int nc_put_vara(int ncid, int varid, const size_t *startp, const size_t *countp, const void *op); extern int nc_get_vara(int ncid, int varid, const size_t *startp, const size_t *countp, void *ip); extern int nc_put_vars(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const void *op); extern int nc_get_vars(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, void *ip); extern int nc_put_varm(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const void *op); extern int nc_get_varm(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, void *ip); extern int nc_def_var_deflate(int ncid, int varid, int shuffle, int deflate, int deflate_level); extern int nc_inq_var_deflate(int ncid, int varid, int *shufflep, int *deflatep, int *deflate_levelp); extern int nc_inq_var_szip(int ncid, int varid, int *options_maskp, int *pixels_per_blockp); extern int nc_def_var_fletcher32(int ncid, int varid, int fletcher32); extern int nc_inq_var_fletcher32(int ncid, int varid, int *fletcher32p); extern int nc_def_var_chunking(int ncid, int varid, int storage, const size_t *chunksizesp); extern int nc_inq_var_chunking(int ncid, int varid, int *storagep, size_t *chunksizesp); extern int nc_def_var_fill(int ncid, int varid, int no_fill, const void *fill_value); extern int nc_inq_var_fill(int ncid, int varid, int *no_fill, void *fill_valuep); extern int nc_def_var_endian(int ncid, int varid, int endian); extern int nc_inq_var_endian(int ncid, int varid, int *endianp); extern int nc_set_fill(int ncid, int fillmode, int *old_modep); extern int nc_set_default_format(int format, int *old_formatp); extern int nc_set_chunk_cache(size_t size, size_t nelems, float preemption); extern int nc_get_chunk_cache(size_t *sizep, size_t *nelemsp, float *preemptionp); extern int nc_set_var_chunk_cache(int ncid, int varid, size_t size, size_t nelems, float preemption); extern int nc_get_var_chunk_cache(int ncid, int varid, size_t *sizep, size_t *nelemsp, float *preemptionp); extern int nc_redef(int ncid); extern int nc__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align); extern int nc_enddef(int ncid); extern int nc_sync(int ncid); extern int nc_abort(int ncid); extern int nc_close(int ncid); extern int nc_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp); extern int nc_inq_ndims(int ncid, int *ndimsp); extern int nc_inq_nvars(int ncid, int *nvarsp); extern int nc_inq_natts(int ncid, int *nattsp); extern int nc_inq_unlimdim(int ncid, int *unlimdimidp); extern int nc_inq_unlimdims(int ncid, int *nunlimdimsp, int *unlimdimidsp); extern int nc_inq_format(int ncid, int *formatp); extern int nc_inq_format_extended(int ncid, int *formatp, int* modep); extern int nc_def_dim(int ncid, const char *name, size_t len, int *idp); extern int nc_inq_dimid(int ncid, const char *name, int *idp); extern int nc_inq_dim(int ncid, int dimid, char *name, size_t *lenp); extern int nc_inq_dimname(int ncid, int dimid, char *name); extern int nc_inq_dimlen(int ncid, int dimid, size_t *lenp); extern int nc_rename_dim(int ncid, int dimid, const char *name); extern int nc_inq_att(int ncid, int varid, const char *name, nc_type *xtypep, size_t *lenp); extern int nc_inq_attid(int ncid, int varid, const char *name, int *idp); extern int nc_inq_atttype(int ncid, int varid, const char *name, nc_type *xtypep); extern int nc_inq_attlen(int ncid, int varid, const char *name, size_t *lenp); extern int nc_inq_attname(int ncid, int varid, int attnum, char *name); extern int nc_copy_att(int ncid_in, int varid_in, const char *name, int ncid_out, int varid_out); extern int nc_rename_att(int ncid, int varid, const char *name, const char *newname); extern int nc_del_att(int ncid, int varid, const char *name); extern int nc_put_att_text(int ncid, int varid, const char *name, size_t len, const char *op); extern int nc_get_att_text(int ncid, int varid, const char *name, char *ip); extern int nc_put_att_uchar(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned char *op); extern int nc_get_att_uchar(int ncid, int varid, const char *name, unsigned char *ip); extern int nc_put_att_schar(int ncid, int varid, const char *name, nc_type xtype, size_t len, const signed char *op); extern int nc_get_att_schar(int ncid, int varid, const char *name, signed char *ip); extern int nc_put_att_short(int ncid, int varid, const char *name, nc_type xtype, size_t len, const short *op); extern int nc_get_att_short(int ncid, int varid, const char *name, short *ip); extern int nc_put_att_int(int ncid, int varid, const char *name, nc_type xtype, size_t len, const int *op); extern int nc_get_att_int(int ncid, int varid, const char *name, int *ip); extern int nc_put_att_long(int ncid, int varid, const char *name, nc_type xtype, size_t len, const long *op); extern int nc_get_att_long(int ncid, int varid, const char *name, long *ip); extern int nc_put_att_float(int ncid, int varid, const char *name, nc_type xtype, size_t len, const float *op); extern int nc_get_att_float(int ncid, int varid, const char *name, float *ip); extern int nc_put_att_double(int ncid, int varid, const char *name, nc_type xtype, size_t len, const double *op); extern int nc_get_att_double(int ncid, int varid, const char *name, double *ip); extern int nc_put_att_ushort(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned short *op); extern int nc_get_att_ushort(int ncid, int varid, const char *name, unsigned short *ip); extern int nc_put_att_uint(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned int *op); extern int nc_get_att_uint(int ncid, int varid, const char *name, unsigned int *ip); extern int nc_put_att_longlong(int ncid, int varid, const char *name, nc_type xtype, size_t len, const long long *op); extern int nc_get_att_longlong(int ncid, int varid, const char *name, long long *ip); extern int nc_put_att_ulonglong(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned long long *op); extern int nc_get_att_ulonglong(int ncid, int varid, const char *name, unsigned long long *ip); extern int nc_put_att_string(int ncid, int varid, const char *name, size_t len, const char **op); extern int nc_get_att_string(int ncid, int varid, const char *name, char **ip); extern int nc_def_var(int ncid, const char *name, nc_type xtype, int ndims, const int *dimidsp, int *varidp); extern int nc_inq_var(int ncid, int varid, char *name, nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp); extern int nc_inq_varid(int ncid, const char *name, int *varidp); extern int nc_inq_varname(int ncid, int varid, char *name); extern int nc_inq_vartype(int ncid, int varid, nc_type *xtypep); extern int nc_inq_varndims(int ncid, int varid, int *ndimsp); extern int nc_inq_vardimid(int ncid, int varid, int *dimidsp); extern int nc_inq_varnatts(int ncid, int varid, int *nattsp); extern int nc_rename_var(int ncid, int varid, const char *name); extern int nc_copy_var(int ncid_in, int varid, int ncid_out); extern int nc_put_var1_text(int ncid, int varid, const size_t *indexp, const char *op); extern int nc_get_var1_text(int ncid, int varid, const size_t *indexp, char *ip); extern int nc_put_var1_uchar(int ncid, int varid, const size_t *indexp, const unsigned char *op); extern int nc_get_var1_uchar(int ncid, int varid, const size_t *indexp, unsigned char *ip); extern int nc_put_var1_schar(int ncid, int varid, const size_t *indexp, const signed char *op); extern int nc_get_var1_schar(int ncid, int varid, const size_t *indexp, signed char *ip); extern int nc_put_var1_short(int ncid, int varid, const size_t *indexp, const short *op); extern int nc_get_var1_short(int ncid, int varid, const size_t *indexp, short *ip); extern int nc_put_var1_int(int ncid, int varid, const size_t *indexp, const int *op); extern int nc_get_var1_int(int ncid, int varid, const size_t *indexp, int *ip); extern int nc_put_var1_long(int ncid, int varid, const size_t *indexp, const long *op); extern int nc_get_var1_long(int ncid, int varid, const size_t *indexp, long *ip); extern int nc_put_var1_float(int ncid, int varid, const size_t *indexp, const float *op); extern int nc_get_var1_float(int ncid, int varid, const size_t *indexp, float *ip); extern int nc_put_var1_double(int ncid, int varid, const size_t *indexp, const double *op); extern int nc_get_var1_double(int ncid, int varid, const size_t *indexp, double *ip); extern int nc_put_var1_ushort(int ncid, int varid, const size_t *indexp, const unsigned short *op); extern int nc_get_var1_ushort(int ncid, int varid, const size_t *indexp, unsigned short *ip); extern int nc_put_var1_uint(int ncid, int varid, const size_t *indexp, const unsigned int *op); extern int nc_get_var1_uint(int ncid, int varid, const size_t *indexp, unsigned int *ip); extern int nc_put_var1_longlong(int ncid, int varid, const size_t *indexp, const long long *op); extern int nc_get_var1_longlong(int ncid, int varid, const size_t *indexp, long long *ip); extern int nc_put_var1_ulonglong(int ncid, int varid, const size_t *indexp, const unsigned long long *op); extern int nc_get_var1_ulonglong(int ncid, int varid, const size_t *indexp, unsigned long long *ip); extern int nc_put_var1_string(int ncid, int varid, const size_t *indexp, const char **op); extern int nc_get_var1_string(int ncid, int varid, const size_t *indexp, char **ip); extern int nc_put_vara_text(int ncid, int varid, const size_t *startp, const size_t *countp, const char *op); extern int nc_get_vara_text(int ncid, int varid, const size_t *startp, const size_t *countp, char *ip); extern int nc_put_vara_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned char *op); extern int nc_get_vara_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip); extern int nc_put_vara_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const signed char *op); extern int nc_get_vara_schar(int ncid, int varid, const size_t *startp, const size_t *countp, signed char *ip); extern int nc_put_vara_short(int ncid, int varid, const size_t *startp, const size_t *countp, const short *op); extern int nc_get_vara_short(int ncid, int varid, const size_t *startp, const size_t *countp, short *ip); extern int nc_put_vara_int(int ncid, int varid, const size_t *startp, const size_t *countp, const int *op); extern int nc_get_vara_int(int ncid, int varid, const size_t *startp, const size_t *countp, int *ip); extern int nc_put_vara_long(int ncid, int varid, const size_t *startp, const size_t *countp, const long *op); extern int nc_get_vara_long(int ncid, int varid, const size_t *startp, const size_t *countp, long *ip); extern int nc_put_vara_float(int ncid, int varid, const size_t *startp, const size_t *countp, const float *op); extern int nc_get_vara_float(int ncid, int varid, const size_t *startp, const size_t *countp, float *ip); extern int nc_put_vara_double(int ncid, int varid, const size_t *startp, const size_t *countp, const double *op); extern int nc_get_vara_double(int ncid, int varid, const size_t *startp, const size_t *countp, double *ip); extern int nc_put_vara_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned short *op); extern int nc_get_vara_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned short *ip); extern int nc_put_vara_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned int *op); extern int nc_get_vara_uint(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned int *ip); extern int nc_put_vara_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const long long *op); extern int nc_get_vara_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, long long *ip); extern int nc_put_vara_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned long long *op); extern int nc_get_vara_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned long long *ip); extern int nc_put_vara_string(int ncid, int varid, const size_t *startp, const size_t *countp, const char **op); extern int nc_get_vara_string(int ncid, int varid, const size_t *startp, const size_t *countp, char **ip); extern int nc_put_vars_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const char *op); extern int nc_get_vars_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, char *ip); extern int nc_put_vars_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned char *op); extern int nc_get_vars_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned char *ip); extern int nc_put_vars_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const signed char *op); extern int nc_get_vars_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, signed char *ip); extern int nc_put_vars_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const short *op); extern int nc_get_vars_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, short *ip); extern int nc_put_vars_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const int *op); extern int nc_get_vars_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, int *ip); extern int nc_put_vars_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const long *op); extern int nc_get_vars_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, long *ip); extern int nc_put_vars_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const float *op); extern int nc_get_vars_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, float *ip); extern int nc_put_vars_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const double *op); extern int nc_get_vars_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, double *ip); extern int nc_put_vars_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned short *op); extern int nc_get_vars_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned short *ip); extern int nc_put_vars_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned int *op); extern int nc_get_vars_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned int *ip); extern int nc_put_vars_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const long long *op); extern int nc_get_vars_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, long long *ip); extern int nc_put_vars_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned long long *op); extern int nc_get_vars_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned long long *ip); extern int nc_put_vars_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const char **op); extern int nc_get_vars_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, char **ip); extern int nc_put_varm_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const char *op); extern int nc_get_varm_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, char *ip); extern int nc_put_varm_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const unsigned char *op); extern int nc_get_varm_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned char *ip); extern int nc_put_varm_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const signed char *op); extern int nc_get_varm_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, signed char *ip); extern int nc_put_varm_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const short *op); extern int nc_get_varm_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, short *ip); extern int nc_put_varm_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const int *op); extern int nc_get_varm_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, int *ip); extern int nc_put_varm_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const long *op); extern int nc_get_varm_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, long *ip); extern int nc_put_varm_float(int ncid, int varid,const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const float *op); extern int nc_get_varm_float(int ncid, int varid,const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, float *ip); extern int nc_put_varm_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const double *op); extern int nc_get_varm_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, double *ip); extern int nc_put_varm_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned short *op); extern int nc_get_varm_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned short *ip); extern int nc_put_varm_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned int *op); extern int nc_get_varm_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned int *ip); extern int nc_put_varm_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const long long *op); extern int nc_get_varm_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, long long *ip); extern int nc_put_varm_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned long long *op); extern int nc_get_varm_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned long long *ip); extern int nc_put_varm_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const char **op); extern int nc_get_varm_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, char **ip); extern int nc_put_var_text(int ncid, int varid, const char *op); extern int nc_get_var_text(int ncid, int varid, char *ip); extern int nc_put_var_uchar(int ncid, int varid, const unsigned char *op); extern int nc_get_var_uchar(int ncid, int varid, unsigned char *ip); extern int nc_put_var_schar(int ncid, int varid, const signed char *op); extern int nc_get_var_schar(int ncid, int varid, signed char *ip); extern int nc_put_var_short(int ncid, int varid, const short *op); extern int nc_get_var_short(int ncid, int varid, short *ip); extern int nc_put_var_int(int ncid, int varid, const int *op); extern int nc_get_var_int(int ncid, int varid, int *ip); extern int nc_put_var_long(int ncid, int varid, const long *op); extern int nc_get_var_long(int ncid, int varid, long *ip); extern int nc_put_var_float(int ncid, int varid, const float *op); extern int nc_get_var_float(int ncid, int varid, float *ip); extern int nc_put_var_double(int ncid, int varid, const double *op); extern int nc_get_var_double(int ncid, int varid, double *ip); extern int nc_put_var_ushort(int ncid, int varid, const unsigned short *op); extern int nc_get_var_ushort(int ncid, int varid, unsigned short *ip); extern int nc_put_var_uint(int ncid, int varid, const unsigned int *op); extern int nc_get_var_uint(int ncid, int varid, unsigned int *ip); extern int nc_put_var_longlong(int ncid, int varid, const long long *op); extern int nc_get_var_longlong(int ncid, int varid, long long *ip); extern int nc_put_var_ulonglong(int ncid, int varid, const unsigned long long *op); extern int nc_get_var_ulonglong(int ncid, int varid, unsigned long long *ip); extern int nc_put_var_string(int ncid, int varid, const char **op); extern int nc_get_var_string(int ncid, int varid, char **ip); extern int nc_put_att_ubyte(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned char *op); extern int nc_get_att_ubyte(int ncid, int varid, const char *name, unsigned char *ip); extern int nc_put_var1_ubyte(int ncid, int varid, const size_t *indexp, const unsigned char *op); extern int nc_get_var1_ubyte(int ncid, int varid, const size_t *indexp, unsigned char *ip); extern int nc_put_vara_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned char *op); extern int nc_get_vara_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip); extern int nc_put_vars_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned char *op); extern int nc_get_vars_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned char *ip); extern int nc_put_varm_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned char *op); extern int nc_get_varm_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned char *ip); extern int nc_put_var_ubyte(int ncid, int varid, const unsigned char *op); extern int nc_get_var_ubyte(int ncid, int varid, unsigned char *ip); # 1690 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern int nc_show_metadata(int ncid); extern int nc__create_mp(const char *path, int cmode, size_t initialsz, int basepe, size_t *chunksizehintp, int *ncidp); extern int nc__open_mp(const char *path, int mode, int basepe, size_t *chunksizehintp, int *ncidp); extern int nc_delete(const char *path); extern int nc_delete_mp(const char *path, int basepe); extern int nc_set_base_pe(int ncid, int pe); extern int nc_inq_base_pe(int ncid, int *pe); extern int nctypelen(nc_type datatype); # 1757 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern int ncerr; extern int ncopts; extern void nc_advise(const char *cdf_routine_name, int err, const char *fmt,...); typedef int nclong; extern int nccreate(const char* path, int cmode); extern int ncopen(const char* path, int mode); extern int ncsetfill(int ncid, int fillmode); extern int ncredef(int ncid); extern int ncendef(int ncid); extern int ncsync(int ncid); extern int ncabort(int ncid); extern int ncclose(int ncid); extern int ncinquire(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimp); extern int ncdimdef(int ncid, const char *name, long len); extern int ncdimid(int ncid, const char *name); extern int ncdiminq(int ncid, int dimid, char *name, long *lenp); extern int ncdimrename(int ncid, int dimid, const char *name); extern int ncattput(int ncid, int varid, const char *name, nc_type xtype, int len, const void *op); extern int ncattinq(int ncid, int varid, const char *name, nc_type *xtypep, int *lenp); extern int ncattget(int ncid, int varid, const char *name, void *ip); extern int ncattcopy(int ncid_in, int varid_in, const char *name, int ncid_out, int varid_out); extern int ncattname(int ncid, int varid, int attnum, char *name); extern int ncattrename(int ncid, int varid, const char *name, const char *newname); extern int ncattdel(int ncid, int varid, const char *name); extern int ncvardef(int ncid, const char *name, nc_type xtype, int ndims, const int *dimidsp); extern int ncvarid(int ncid, const char *name); extern int ncvarinq(int ncid, int varid, char *name, nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp); extern int ncvarput1(int ncid, int varid, const long *indexp, const void *op); extern int ncvarget1(int ncid, int varid, const long *indexp, void *ip); extern int ncvarput(int ncid, int varid, const long *startp, const long *countp, const void *op); extern int ncvarget(int ncid, int varid, const long *startp, const long *countp, void *ip); extern int ncvarputs(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const void *op); extern int ncvargets(int ncid, int varid, const long *startp, const long *countp, const long *stridep, void *ip); extern int ncvarputg(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const long *imapp, const void *op); extern int ncvargetg(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const long *imapp, void *ip); extern int ncvarrename(int ncid, int varid, const char *name); extern int ncrecinq(int ncid, int *nrecvarsp, int *recvaridsp, long *recsizesp); extern int ncrecget(int ncid, long recnum, void **datap); extern int ncrecput(int ncid, long recnum, void *const *datap); } # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['netcdf.h'] in ['/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.netcdf(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.netcdf(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.netcdf-cxx(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.netcdf-cxx(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.exodusii(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/exodusii.py:27) TESTING: configureLibrary from config.packages.exodusii(config/BuildSystem/config/packages/exodusii.py:27) ================================================================================== Checking for a functional exodusii Looking for EXODUSII in directory starting with exodus Could not locate an existing copy of exodus: ['sowing'] Downloading exodusii =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/exodus-5.24.tar.bz2 for EXODUSII =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/exodus-5.24.tar.bz2 to /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_exodus-5.24.tar.bz2 Extracting /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_exodus-5.24.tar.bz2 Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages; chmod -R a+r exodus-5.24;find exodus-5.24 -type d -name "*" -exec chmod a+rx {} \; Looking for EXODUSII in directory starting with exodus Found a copy of EXODUSII in exodus-5.24 Looking for EXODUSII in directory starting with exodus Found a copy of EXODUSII in exodus-5.24 Pushing language C Popping language C Pushing language FC Popping language FC ['AR', 'AR_FLAGS', 'AR_LIB_SUFFIX', 'CC', 'CC_LINKER_FLAGS', 'CFLAGS', 'CPP', 'CPPFLAGS', 'CSharedLinkerFlag', 'CUDAC_LINKER_FLAGS', 'CUDAFLAGS', 'CUDAPPFLAGS', 'CXX', 'CXXCPP', 'CXXCPPFLAGS', 'CXXFLAGS', 'CXX_CXXFLAGS', 'CXX_LINKER_FLAGS', 'CxxSharedLinkerFlag', 'FAST_AR_FLAGS', 'FC', 'FCSharedLinkerFlag', 'FC_LINKER_FLAGS', 'FFLAGS', 'LDFLAGS', 'LD_SHARED', 'LIBS', 'RANLIB', '_Logger__root', '__class__', '__delattr__', '__dict__', '__doc__', '__format__', '__getattribute__', '__getstate__', '__hash__', '__init__', '__module__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__setstate__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', '_argDB', '_configured', '_linewidth', '_setup', '_tmpDir', 'actions', 'addArgumentSubstitution', 'addCompilerFlag', 'addDefine', 'addLdPath', 'addLinkerFlag', 'addMakeMacro', 'addMakeRule', 'addPrototype', 'addSubstitution', 'addTypedef', 'argDB', 'argSubst', 'checkArchiver', 'checkCCompiler', 'checkCPreprocessor', 'checkCUDACompiler', 'checkCUDAPreprocessor', 'checkCompile', 'checkCompiler', 'checkCompilerFlag', 'checkCxxCompiler', 'checkCxxPreprocessor', 'checkDynamicLinker', 'checkEnvCompilers', 'checkExecutable', 'checkFortranComments', 'checkFortranCompiler', 'checkInitialFlags', 'checkIntoShared', 'checkLargeFileIO', 'checkLibC', 'checkLink', 'checkLinkerFlag', 'checkLinkerMac', 'checkLog', 'checkMPICompilerOverride', 'checkPIC', 'checkPreprocess', 'checkPython', 'checkRun', 'checkSharedLinker', 'checkSharedLinkerPaths', 'checkVendor', 'checkWrite', 'clArgs', 'cleanup', 'closeLog', 'compilerDefines', 'compilerFixes', 'compilerObj', 'compilerSource', 'configure', 'containsInvalidFlag', 'createArgDB', 'createLog', 'debugIndent', 'debugLevel', 'debugSections', 'defaultCheckCommand', 'defaultDB', 'defaultLog', 'defaultOut', 'defines', 'delDefine', 'delMakeMacro', 'dynamicLibraries', 'dynamicLibraryExt', 'dynamicLibraryFlags', 'dynamicLinker', 'executeShellCommand', 'executeTest', 'explicitLibc', 'filterCompileOutput', 'filterLinkOutput', 'fortranModuleIncludeFlag', 'fortranModuleOutputFlag', 'framework', 'generateArchiverGuesses', 'generateCCompilerGuesses', 'generateCPreprocessorGuesses', 'generateCUDACompilerGuesses', 'generateCUDAPreprocessorGuesses', 'generateCxxCompilerGuesses', 'generateCxxPreprocessorGuesses', 'generateDynamicLinkerGuesses', 'generateFortranCompilerGuesses', 'generateSharedLinkerGuesses', 'getArchiverFlags', 'getArgDB', 'getCode', 'getCompiler', 'getCompilerCmd', 'getCompilerFlags', 'getCompilerFlagsArg', 'getCompilerFlagsName', 'getDynamicLinker', 'getDynamicLinkerCmd', 'getDynamicLinkerFlags', 'getExecutable', 'getExecutables', 'getFullLinkerCmd', 'getHeaders', 'getLinewidth', 'getLinker', 'getLinkerCmd', 'getLinkerFlags', 'getLinkerFlagsArg', 'getLinkerFlagsName', 'getMakeMacro', 'getModule', 'getPreprocessor', 'getPreprocessorCmd', 'getPreprocessorFlagsArg', 'getPreprocessorFlagsName', 'getRoot', 'getSharedLinker', 'getSharedLinkerCmd', 'getSharedLinkerFlags', 'getTmpDir', 'hasHelpFlag', 'headerPrefix', 'headers', 'help', 'importModule', 'insertArguments', 'insertCompilerFlag', 'isAIXAR', 'isClang', 'isCompaqF90', 'isCray', 'isCrayVector', 'isCygwin', 'isDarwin', 'isFreeBSD', 'isG95', 'isGNU', 'isGfortran45x', 'isGfortran46plus', 'isIBM', 'isIntel', 'isLinux', 'isNAG', 'isPGI', 'isPIC', 'isSolaris', 'isSolarisAR', 'isSun', 'isWindows', 'language', 'libraries', 'linewidth', 'linkerObj', 'linkerSource', 'loadConfigure', 'log', 'logBack', 'logClear', 'logClearRemoveDirectory', 'logError', 'logIndent', 'logName', 'logPrint', 'logPrintBox', 'logPrintDivider', 'logResetRemoveDirectory', 'logWrite', 'mainLanguage', 'makeMacros', 'makeRules', 'mesg', 'no_configure', 'openPipe', 'out', 'output', 'outputCompile', 'outputLink', 'outputPreprocess', 'outputRun', 'popLanguage', 'preprocess', 'printEnvVariables', 'prototypes', 'pushLanguage', 'requireMpiLdPath', 'resetEnvCompilers', 'restoreLog', 'root', 'runShellCommand', 'saveLog', 'setArgDB', 'setLinewidth', 'setRoot', 'setStaticLinker', 'setTmpDir', 'setup', 'setupArguments', 'setupDependencies', 'setupHelp', 'setupPackageDependencies', 'sharedLibraries', 'sharedLibraryExt', 'sharedLibraryFlags', 'sharedLinker', 'shell', 'showHelp', 'splitIncludes', 'splitLibs', 'staticLibraries', 'subst', 'substPrefix', 'tmpDir', 'typedefs', 'updateMPICompilers', 'useMPICompilers', 'usePIC', 'usedMPICompilers', 'vendor']Have to rebuild exodusii, /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodusii != /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/exodusii =============================================================================== Compiling ExodusII; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus && make -f Makefile.standalone clean libexodus.a RANLIB="/usr/bin/ranlib" AR="/usr/bin/ar cr" NETCDF="/glade/p/work/fandek/petsc/arch-linux2-cxx-debug" CC="mpicc" CCOPTIONS=" -fPIC -wd1572 -g -DADDC_ " FC="mpif90" F77OPTIONS=" -fPIC -g " stdout: cleaning in /cbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' cleaning in /forbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' cleaning in /cbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testwt_ss testwt_nossnsdf testrd_ss testrdwt testcp testcpd testwt_clb testwt_nc testrd_nc testwt-zeroe testwt-zeron testwt-one-attrib create_mesh rd_wt_mesh testcef test_nemesis testref testwt-nsided testrd-nsided testwt-nfaced testrd-nfaced testwt-long-name testrd-long-name testcp_nl testcp_ln rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' cleaning in /forbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test' rm -f testwt rm -f testwtd rm -f testrd rm -f testrd1 rm -f testrdd rm -f testwt1 rm -f testwt2 rm -f testwtm rm -f testcp rm -f testcpnl rm -f testcpln rm -f testwt_nsid rm -f testrd_nsid rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testcp testcpnl testcpln testwt_nsid testrd_nsid test_nem rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test' echo "making exodus in cbind/src" making exodus in cbind/src (cd cbind/src && make -f Makefile.standalone "AR=/usr/bin/ar cr" "CC=mpicc" "CFLAGS=-O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include " "RANLIB=/usr/bin/ranlib" libexodus.a) make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_close.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_conv.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_copy.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_create.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_cvt_nodes_to_sides.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_err.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_all_times.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_attr_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_attr_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_block.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_block_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_cmap_params.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_concat_node_sets.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_concat_sets.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_concat_side_set_node_count.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_concat_side_sets.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_coord.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_coordinate_frames.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_coord_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_eb_info_global.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_attr_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_blk_ids.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_block.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_cmap.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_type.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_var_tab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_elem_var_time.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_entity_count_per_polyhedra.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_glob_vars.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_glob_var_time.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_id_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_ids.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_info.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_init.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_init_ext.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_init_global.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_init_info.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_loadbal_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_map_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_name.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_coord.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_elem_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_elem_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_elem_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_nodal_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_node_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_node_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_node_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_nodal_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_nodal_var_time.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_cmap.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_set_dist_fact.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_set_ids.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_node_set_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_one_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_nset_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_nset_var_tab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_side_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_side_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_ns_param_global.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_n_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_object_truth_vector.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_one_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_one_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_coord.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_elem_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_elem_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_get_partial_elem_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include 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-I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_coord.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_elem_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_elem_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_nodal_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_node_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_node_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_node_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_nodal_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_nodal_var_slab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_cmap.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_set_dist_fact.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_node_set_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_one_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_nset_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_nset_var_tab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_side_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_side_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_ns_param_global.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_n_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_one_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_one_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_coord.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_elem_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_elem_conn.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_elem_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_elem_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_id_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_nodal_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_node_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_node_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_node_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_num_map.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_one_attr.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_set_dist_fact.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_side_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_side_set_df.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_partial_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_processor_elem_maps.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_processor_node_maps.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_prop_array.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_prop.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_prop_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_qa.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_set_dist_fact.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_set_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_sets.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_side_set.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_side_set_dist_fact.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_side_set_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_sset_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_sset_var_tab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_ss_param_global.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_time.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_truth_table.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_var.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_variable_name.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_variable_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_variable_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_var_name.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_var_names.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_var_param.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_put_var_tab.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_update.c mpicc -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include ex_utils.c /usr/bin/ar cr libexodus.a ex_close.o ex_conv.o ex_copy.o ex_create.o ex_cvt_nodes_to_sides.o ex_err.o ex_get_all_times.o ex_get_attr.o ex_get_attr_names.o ex_get_attr_param.o ex_get_block.o ex_get_block_param.o ex_get_cmap_params.o ex_get_concat_node_sets.o ex_get_concat_sets.o ex_get_concat_side_set_node_count.o ex_get_concat_side_sets.o ex_get_conn.o ex_get_coord.o ex_get_coordinate_frames.o ex_get_coord_names.o ex_get_eb_info_global.o ex_get_elem_attr.o ex_get_elem_attr_names.o ex_get_elem_blk_ids.o ex_get_elem_block.o ex_get_elem_cmap.o ex_get_elem_conn.o ex_get_elem_map.o ex_get_elem_num_map.o ex_get_elem_type.o ex_get_elem_var.o ex_get_elem_var_tab.o ex_get_elem_var_time.o ex_get_entity_count_per_polyhedra.o ex_get_glob_vars.o ex_get_glob_var_time.o ex_get_id_map.o ex_get_ids.o ex_get_info.o ex_get_init.o ex_get_init_ext.o ex_get_init_global.o ex_get_init_info.o ex_get_loadbal_param.o ex_get_map.o ex_get_map_param.o ex_get_name.o ex_get_names.o ex_get_n_attr.o ex_get_n_conn.o ex_get_n_coord.o ex_get_n_elem_attr.o ex_get_n_elem_conn.o ex_get_n_elem_num_map.o ex_get_n_elem_var.o ex_get_n_nodal_var.o ex_get_n_node_num_map.o ex_get_n_node_set.o ex_get_n_node_set_df.o ex_get_nodal_var.o ex_get_nodal_var_time.o ex_get_node_cmap.o ex_get_node_map.o ex_get_node_num_map.o ex_get_node_set.o ex_get_node_set_dist_fact.o ex_get_node_set_ids.o ex_get_node_set_param.o ex_get_n_one_attr.o ex_get_nset_var.o ex_get_nset_var_tab.o ex_get_n_side_set.o ex_get_n_side_set_df.o ex_get_ns_param_global.o ex_get_num_map.o ex_get_n_var.o ex_get_object_truth_vector.o ex_get_one_attr.o ex_get_one_elem_attr.o ex_get_partial_attr.o ex_get_partial_conn.o ex_get_partial_coord.o ex_get_partial_elem_attr.o ex_get_partial_elem_conn.o ex_get_partial_elem_map.o ex_get_partial_elem_num_map.o ex_get_partial_elem_var.o ex_get_partial_id_map.o ex_get_partial_nodal_var.o ex_get_partial_node_num_map.o ex_get_partial_node_set.o ex_get_partial_node_set_df.o ex_get_partial_num_map.o ex_get_partial_one_attr.o ex_get_partial_set_dist_fact.o ex_get_partial_side_set.o ex_get_partial_side_set_df.o ex_get_partial_var.o ex_get_processor_elem_maps.o ex_get_processor_node_maps.o ex_get_prop_array.o ex_get_prop.o ex_get_prop_names.o ex_get_qa.o ex_get_set.o ex_get_set_dist_fact.o ex_get_set_param.o ex_get_sets.o ex_get_side_set.o ex_get_side_set_dist_fact.o ex_get_side_set_ids.o ex_get_side_set_node_count.o ex_get_side_set_node_list.o ex_get_side_set_node_list_len.o ex_get_side_set_param.o ex_get_sset_var.o ex_get_sset_var_tab.o ex_get_ss_param_global.o ex_get_time.o ex_get_truth_table.o ex_get_var.o ex_get_variable_name.o ex_get_variable_names.o ex_get_variable_param.o ex_get_var_name.o ex_get_var_names.o ex_get_var_param.o ex_get_var_tab.o ex_get_var_time.o ex_inquire.o ex_ne_util.o ex_open.o ex_opts.o ex_put_all_var_param.o ex_put_all_var_param_ext.o ex_put_attr.o ex_put_attr_names.o ex_put_attr_param.o ex_put_block.o ex_put_block_param.o ex_put_cmap_params.o ex_put_cmap_params_cc.o ex_put_concat_all_blocks.o ex_put_concat_elem_block.o ex_put_concat_node_sets.o ex_put_concat_sets.o ex_put_concat_side_sets.o ex_put_concat_var_param.o ex_put_conn.o ex_put_coord.o ex_put_coordinate_frames.o ex_put_coord_names.o ex_put_eb_info_global.o ex_put_elem_attr.o ex_put_elem_attr_names.o ex_put_elem_block.o ex_put_elem_cmap.o ex_put_elem_conn.o ex_put_elem_map.o ex_put_elem_num_map.o ex_put_elem_var.o ex_put_elem_var_slab.o ex_put_elem_var_tab.o ex_put_entity_count_per_polyhedra.o ex_put_glob_vars.o ex_put_id_map.o ex_put_info.o ex_put_init.o ex_put_init_ext.o ex_put_init_global.o ex_put_init_info.o ex_put_loadbal_param.o ex_put_loadbal_param_cc.o ex_put_map.o ex_put_map_param.o ex_put_name.o ex_put_names.o ex_put_n_coord.o ex_put_n_elem_attr.o ex_put_n_elem_conn.o ex_put_n_elem_num_map.o ex_put_n_nodal_var.o ex_put_n_node_num_map.o ex_put_n_node_set.o ex_put_n_node_set_df.o ex_put_nodal_var.o ex_put_nodal_var_slab.o ex_put_node_cmap.o ex_put_node_map.o ex_put_node_num_map.o ex_put_node_set.o ex_put_node_set_dist_fact.o ex_put_node_set_param.o ex_put_n_one_attr.o ex_put_nset_var.o ex_put_nset_var_tab.o ex_put_n_side_set.o ex_put_n_side_set_df.o ex_put_ns_param_global.o ex_put_num_map.o ex_put_n_var.o ex_put_one_attr.o ex_put_one_elem_attr.o ex_put_partial_attr.o ex_put_partial_coord.o ex_put_partial_elem_attr.o ex_put_partial_elem_conn.o ex_put_partial_elem_map.o ex_put_partial_elem_num_map.o ex_put_partial_id_map.o ex_put_partial_nodal_var.o ex_put_partial_node_num_map.o ex_put_partial_node_set.o ex_put_partial_node_set_df.o ex_put_partial_num_map.o ex_put_partial_one_attr.o ex_put_partial_set.o ex_put_partial_set_dist_fact.o ex_put_partial_side_set.o ex_put_partial_side_set_df.o ex_put_partial_var.o ex_put_processor_elem_maps.o ex_put_processor_node_maps.o ex_put_prop_array.o ex_put_prop.o ex_put_prop_names.o ex_put_qa.o ex_put_set.o ex_put_set_dist_fact.o ex_put_set_param.o ex_put_sets.o ex_put_side_set.o ex_put_side_set_dist_fact.o ex_put_side_set_param.o ex_put_sset_var.o ex_put_sset_var_tab.o ex_put_ss_param_global.o ex_put_time.o ex_put_truth_table.o ex_put_var.o ex_put_variable_name.o ex_put_variable_names.o ex_put_variable_param.o ex_put_var_name.o ex_put_var_names.o ex_put_var_param.o ex_put_var_tab.o ex_update.o ex_utils.o /usr/bin/ranlib libexodus.a cp libexodus.a ../../ make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' cp cbind/src/libexodus.a . /usr/bin/ranlib libexodus.a Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus && make -f Makefile.standalone libexoIIv2for.a RANLIB="/usr/bin/ranlib" AR="/usr/bin/ar cr" NETCDF="/glade/p/work/fandek/petsc/arch-linux2-cxx-debug" CC="mpicc" CCOPTIONS=" -fPIC -wd1572 -g -DADDC_ " FC="mpif90" F77OPTIONS=" -fPIC -g " stdout: echo "making exoIIv2for in forbind/src" making exoIIv2for in forbind/src (cd forbind/src && make -f Makefile.standalone "AR=/usr/bin/ar cr" "CC=mpicc" "CFLAGS=-O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include " "FC=mpif90" "FFLAGS=-O2 -fPIC -g -I../../cbind/include -I../../forbind/include " "RANLIB=/usr/bin/ranlib" "SYSTEM=Linux" libexoIIv2for.a) make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' mpif90 -c -O2 -fPIC -g -I../../cbind/include -I../../forbind/include addrwrap.F mpicc -I../../cbind/include -I/Users/gdsjaar/src/SEACAS-SF-INSTALL/include -c -O2 -fPIC -wd1572 -g -DADDC_ -DVERBOSE -I../../cbind/include -I../../forbind/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include exo_jack.c /usr/bin/ar cr libexoIIv2for.a addrwrap.o exo_jack.o /usr/bin/ranlib libexoIIv2for.a cp libexoIIv2for.a ../../ make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' cp forbind/src/libexoIIv2for.a . /usr/bin/ranlib libexoIIv2for.a Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus && make -f Makefile.standalone clean stdout: cleaning in /cbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' cleaning in /forbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' cleaning in /cbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testwt_ss testwt_nossnsdf testrd_ss testrdwt testcp testcpd testwt_clb testwt_nc testrd_nc testwt-zeroe testwt-zeron testwt-one-attrib create_mesh rd_wt_mesh testcef test_nemesis testref testwt-nsided testrd-nsided testwt-nfaced testrd-nfaced testwt-long-name testrd-long-name testcp_nl testcp_ln rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' cleaning in /forbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test' rm -f testwt rm -f testwtd rm -f testrd rm -f testrd1 rm -f testrdd rm -f testwt1 rm -f testwt2 rm -f testwtm rm -f testcp rm -f testcpnl rm -f testcpln rm -f testwt_nsid rm -f testrd_nsid rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testcp testcpnl testcpln testwt_nsid testrd_nsid test_nem rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test' ********Output of running make on exodusii follows ******* cleaning in /cbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/src' cleaning in /forbind/src... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/src' cleaning in /cbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testwt_ss testwt_nossnsdf testrd_ss testrdwt testcp testcpd testwt_clb testwt_nc testrd_nc testwt-zeroe testwt-zeron testwt-one-attrib create_mesh rd_wt_mesh testcef test_nemesis testref testwt-nsided testrd-nsided testwt-nfaced testrd-nfaced testwt-long-name testrd-long-name testcp_nl testcp_ln rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/cbind/test' cleaning in /forbind/test... make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test' rm -f testwt rm -f testwtd rm -f testrd rm -f testrd1 rm -f testrdd rm -f testwt1 rm -f testwt2 rm -f testwtm rm -f testcp rm -f testcpnl rm -f testcpln rm -f testwt_nsid rm -f testrd_nsid rm -f *.res testwt testwtd testrd testrd1 testrdd testwt1 testwt2 testwtm testcp testcpnl testcpln testwt_nsid testrd_nsid test_nem rm -f *.exo rm -f test.output rm -f *.CKP *.ln *.BAK *.bak *.o *.M *.mod core errs ,* *~ *.a .emacs_* tags TAGS make.log MakeOut "#"* make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodus/forbind/test'Makefile.standalone:58: warning: overriding commands for target `testcp_ln' Makefile.standalone:50: warning: ignoring old commands for target `testcp_ln' ********End of Output of running make on exodusii ******* Executing: cp -f /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24/exodusii /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/exodusii Checking for library in Download EXODUSII: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libexoIIv2for.a', 'libexodus.a'] Contents: ['include', 'lib', 'bin', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ex_close] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libexoIIv2for.a', 'libexodus.a'] ['/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a', '/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib/libhdf5hl_fortran.a', 'libhdf5_fortran.a', 'libhdf5_hl.a', 'libhdf5.a'] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char ex_close(); static void _check_ex_close() { ex_close(); } #ifdef __cplusplus } #endif int main() { _check_ex_close();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lexoIIv2for -lexodus -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBEXOIIV2FOR" to "1" Defined "HAVE_LIBEXODUS" to "1" Popping language Cxx Checking for headers Download EXODUSII: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['exodusII.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64', '/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" 1 # 1 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 1 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 2 # 1 "/usr/include/errno.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 30 "/usr/include/errno.h" 2 3 extern "C" { # 1 "/usr/include/bits/errno.h" 1 3 # 1 "/usr/include/linux/errno.h" 1 3 # 1 "/usr/include/asm/errno.h" 1 3 # 1 "/usr/include/asm-generic/errno.h" 1 3 # 1 "/usr/include/asm-generic/errno-base.h" 1 3 # 38 "/usr/include/asm-generic/errno-base.h" 3 # 5 "/usr/include/asm-generic/errno.h" 2 3 # 29 "/usr/include/asm-generic/errno.h" 3 # 96 "/usr/include/asm-generic/errno.h" 3 # 104 "/usr/include/asm-generic/errno.h" 3 # 2 "/usr/include/asm/errno.h" 2 3 # 5 "/usr/include/linux/errno.h" 2 3 # 26 "/usr/include/bits/errno.h" 2 3 extern int *__errno_location (void) throw () __attribute__ ((__const__)); # 37 "/usr/include/errno.h" 2 3 extern char *program_invocation_name, *program_invocation_short_name; } typedef int error_t; # 17 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" 2 typedef int nc_type; extern "C" { # 51 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 81 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 111 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 196 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 319 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 336 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 359 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 374 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 396 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 418 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" # 450 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern const char * nc_inq_libvers(void); extern const char * nc_strerror(int ncerr); extern int nc__create(const char *path, int cmode, size_t initialsz, size_t *chunksizehintp, int *ncidp); extern int nc_create(const char *path, int cmode, int *ncidp); extern int nc__open(const char *path, int mode, size_t *chunksizehintp, int *ncidp); extern int nc_open(const char *path, int mode, int *ncidp); extern int nc_inq_path(int ncid, size_t *pathlen, char *path); extern int nc_inq_ncid(int ncid, const char *name, int *grp_ncid); extern int nc_inq_grps(int ncid, int *numgrps, int *ncids); extern int nc_inq_grpname(int ncid, char *name); extern int nc_inq_grpname_full(int ncid, size_t *lenp, char *full_name); extern int nc_inq_grpname_len(int ncid, size_t *lenp); extern int nc_inq_grp_parent(int ncid, int *parent_ncid); extern int nc_inq_grp_ncid(int ncid, const char *grp_name, int *grp_ncid); extern int nc_inq_grp_full_ncid(int ncid, const char *full_name, int *grp_ncid); extern int nc_inq_varids(int ncid, int *nvars, int *varids); extern int nc_inq_dimids(int ncid, int *ndims, int *dimids, int include_parents); extern int nc_inq_typeids(int ncid, int *ntypes, int *typeids); extern int nc_inq_type_equal(int ncid1, nc_type typeid1, int ncid2, nc_type typeid2, int *equal); extern int nc_def_grp(int parent_ncid, const char *name, int *new_ncid); extern int nc_rename_grp(int grpid, const char *name); extern int nc_def_compound(int ncid, size_t size, const char *name, nc_type *typeidp); extern int nc_insert_compound(int ncid, nc_type xtype, const char *name, size_t offset, nc_type field_typeid); extern int nc_insert_array_compound(int ncid, nc_type xtype, const char *name, size_t offset, nc_type field_typeid, int ndims, const int *dim_sizes); extern int nc_inq_type(int ncid, nc_type xtype, char *name, size_t *size); extern int nc_inq_typeid(int ncid, const char *name, nc_type *typeidp); extern int nc_inq_compound(int ncid, nc_type xtype, char *name, size_t *sizep, size_t *nfieldsp); extern int nc_inq_compound_name(int ncid, nc_type xtype, char *name); extern int nc_inq_compound_size(int ncid, nc_type xtype, size_t *sizep); extern int nc_inq_compound_nfields(int ncid, nc_type xtype, size_t *nfieldsp); extern int nc_inq_compound_field(int ncid, nc_type xtype, int fieldid, char *name, size_t *offsetp, nc_type *field_typeidp, int *ndimsp, int *dim_sizesp); extern int nc_inq_compound_fieldname(int ncid, nc_type xtype, int fieldid, char *name); extern int nc_inq_compound_fieldindex(int ncid, nc_type xtype, const char *name, int *fieldidp); extern int nc_inq_compound_fieldoffset(int ncid, nc_type xtype, int fieldid, size_t *offsetp); extern int nc_inq_compound_fieldtype(int ncid, nc_type xtype, int fieldid, nc_type *field_typeidp); extern int nc_inq_compound_fieldndims(int ncid, nc_type xtype, int fieldid, int *ndimsp); extern int nc_inq_compound_fielddim_sizes(int ncid, nc_type xtype, int fieldid, int *dim_sizes); typedef struct { size_t len; void *p; } nc_vlen_t; extern int nc_def_vlen(int ncid, const char *name, nc_type base_typeid, nc_type *xtypep); extern int nc_inq_vlen(int ncid, nc_type xtype, char *name, size_t *datum_sizep, nc_type *base_nc_typep); extern int nc_free_vlen(nc_vlen_t *vl); extern int nc_free_vlens(size_t len, nc_vlen_t vlens[]); extern int nc_put_vlen_element(int ncid, int typeid1, void *vlen_element, size_t len, const void *data); extern int nc_get_vlen_element(int ncid, int typeid1, const void *vlen_element, size_t *len, void *data); extern int nc_free_string(size_t len, char **data); extern int nc_inq_user_type(int ncid, nc_type xtype, char *name, size_t *size, nc_type *base_nc_typep, size_t *nfieldsp, int *classp); extern int nc_put_att(int ncid, int varid, const char *name, nc_type xtype, size_t len, const void *op); extern int nc_get_att(int ncid, int varid, const char *name, void *ip); extern int nc_def_enum(int ncid, nc_type base_typeid, const char *name, nc_type *typeidp); extern int nc_insert_enum(int ncid, nc_type xtype, const char *name, const void *value); extern int nc_inq_enum(int ncid, nc_type xtype, char *name, nc_type *base_nc_typep, size_t *base_sizep, size_t *num_membersp); extern int nc_inq_enum_member(int ncid, nc_type xtype, int idx, char *name, void *value); extern int nc_inq_enum_ident(int ncid, nc_type xtype, long long value, char *identifier); extern int nc_def_opaque(int ncid, size_t size, const char *name, nc_type *xtypep); extern int nc_inq_opaque(int ncid, nc_type xtype, char *name, size_t *sizep); extern int nc_put_var(int ncid, int varid, const void *op); extern int nc_get_var(int ncid, int varid, void *ip); extern int nc_put_var1(int ncid, int varid, const size_t *indexp, const void *op); extern int nc_get_var1(int ncid, int varid, const size_t *indexp, void *ip); extern int nc_put_vara(int ncid, int varid, const size_t *startp, const size_t *countp, const void *op); extern int nc_get_vara(int ncid, int varid, const size_t *startp, const size_t *countp, void *ip); extern int nc_put_vars(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const void *op); extern int nc_get_vars(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, void *ip); extern int nc_put_varm(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const void *op); extern int nc_get_varm(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, void *ip); extern int nc_def_var_deflate(int ncid, int varid, int shuffle, int deflate, int deflate_level); extern int nc_inq_var_deflate(int ncid, int varid, int *shufflep, int *deflatep, int *deflate_levelp); extern int nc_inq_var_szip(int ncid, int varid, int *options_maskp, int *pixels_per_blockp); extern int nc_def_var_fletcher32(int ncid, int varid, int fletcher32); extern int nc_inq_var_fletcher32(int ncid, int varid, int *fletcher32p); extern int nc_def_var_chunking(int ncid, int varid, int storage, const size_t *chunksizesp); extern int nc_inq_var_chunking(int ncid, int varid, int *storagep, size_t *chunksizesp); extern int nc_def_var_fill(int ncid, int varid, int no_fill, const void *fill_value); extern int nc_inq_var_fill(int ncid, int varid, int *no_fill, void *fill_valuep); extern int nc_def_var_endian(int ncid, int varid, int endian); extern int nc_inq_var_endian(int ncid, int varid, int *endianp); extern int nc_set_fill(int ncid, int fillmode, int *old_modep); extern int nc_set_default_format(int format, int *old_formatp); extern int nc_set_chunk_cache(size_t size, size_t nelems, float preemption); extern int nc_get_chunk_cache(size_t *sizep, size_t *nelemsp, float *preemptionp); extern int nc_set_var_chunk_cache(int ncid, int varid, size_t size, size_t nelems, float preemption); extern int nc_get_var_chunk_cache(int ncid, int varid, size_t *sizep, size_t *nelemsp, float *preemptionp); extern int nc_redef(int ncid); extern int nc__enddef(int ncid, size_t h_minfree, size_t v_align, size_t v_minfree, size_t r_align); extern int nc_enddef(int ncid); extern int nc_sync(int ncid); extern int nc_abort(int ncid); extern int nc_close(int ncid); extern int nc_inq(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimidp); extern int nc_inq_ndims(int ncid, int *ndimsp); extern int nc_inq_nvars(int ncid, int *nvarsp); extern int nc_inq_natts(int ncid, int *nattsp); extern int nc_inq_unlimdim(int ncid, int *unlimdimidp); extern int nc_inq_unlimdims(int ncid, int *nunlimdimsp, int *unlimdimidsp); extern int nc_inq_format(int ncid, int *formatp); extern int nc_inq_format_extended(int ncid, int *formatp, int* modep); extern int nc_def_dim(int ncid, const char *name, size_t len, int *idp); extern int nc_inq_dimid(int ncid, const char *name, int *idp); extern int nc_inq_dim(int ncid, int dimid, char *name, size_t *lenp); extern int nc_inq_dimname(int ncid, int dimid, char *name); extern int nc_inq_dimlen(int ncid, int dimid, size_t *lenp); extern int nc_rename_dim(int ncid, int dimid, const char *name); extern int nc_inq_att(int ncid, int varid, const char *name, nc_type *xtypep, size_t *lenp); extern int nc_inq_attid(int ncid, int varid, const char *name, int *idp); extern int nc_inq_atttype(int ncid, int varid, const char *name, nc_type *xtypep); extern int nc_inq_attlen(int ncid, int varid, const char *name, size_t *lenp); extern int nc_inq_attname(int ncid, int varid, int attnum, char *name); extern int nc_copy_att(int ncid_in, int varid_in, const char *name, int ncid_out, int varid_out); extern int nc_rename_att(int ncid, int varid, const char *name, const char *newname); extern int nc_del_att(int ncid, int varid, const char *name); extern int nc_put_att_text(int ncid, int varid, const char *name, size_t len, const char *op); extern int nc_get_att_text(int ncid, int varid, const char *name, char *ip); extern int nc_put_att_uchar(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned char *op); extern int nc_get_att_uchar(int ncid, int varid, const char *name, unsigned char *ip); extern int nc_put_att_schar(int ncid, int varid, const char *name, nc_type xtype, size_t len, const signed char *op); extern int nc_get_att_schar(int ncid, int varid, const char *name, signed char *ip); extern int nc_put_att_short(int ncid, int varid, const char *name, nc_type xtype, size_t len, const short *op); extern int nc_get_att_short(int ncid, int varid, const char *name, short *ip); extern int nc_put_att_int(int ncid, int varid, const char *name, nc_type xtype, size_t len, const int *op); extern int nc_get_att_int(int ncid, int varid, const char *name, int *ip); extern int nc_put_att_long(int ncid, int varid, const char *name, nc_type xtype, size_t len, const long *op); extern int nc_get_att_long(int ncid, int varid, const char *name, long *ip); extern int nc_put_att_float(int ncid, int varid, const char *name, nc_type xtype, size_t len, const float *op); extern int nc_get_att_float(int ncid, int varid, const char *name, float *ip); extern int nc_put_att_double(int ncid, int varid, const char *name, nc_type xtype, size_t len, const double *op); extern int nc_get_att_double(int ncid, int varid, const char *name, double *ip); extern int nc_put_att_ushort(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned short *op); extern int nc_get_att_ushort(int ncid, int varid, const char *name, unsigned short *ip); extern int nc_put_att_uint(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned int *op); extern int nc_get_att_uint(int ncid, int varid, const char *name, unsigned int *ip); extern int nc_put_att_longlong(int ncid, int varid, const char *name, nc_type xtype, size_t len, const long long *op); extern int nc_get_att_longlong(int ncid, int varid, const char *name, long long *ip); extern int nc_put_att_ulonglong(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned long long *op); extern int nc_get_att_ulonglong(int ncid, int varid, const char *name, unsigned long long *ip); extern int nc_put_att_string(int ncid, int varid, const char *name, size_t len, const char **op); extern int nc_get_att_string(int ncid, int varid, const char *name, char **ip); extern int nc_def_var(int ncid, const char *name, nc_type xtype, int ndims, const int *dimidsp, int *varidp); extern int nc_inq_var(int ncid, int varid, char *name, nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp); extern int nc_inq_varid(int ncid, const char *name, int *varidp); extern int nc_inq_varname(int ncid, int varid, char *name); extern int nc_inq_vartype(int ncid, int varid, nc_type *xtypep); extern int nc_inq_varndims(int ncid, int varid, int *ndimsp); extern int nc_inq_vardimid(int ncid, int varid, int *dimidsp); extern int nc_inq_varnatts(int ncid, int varid, int *nattsp); extern int nc_rename_var(int ncid, int varid, const char *name); extern int nc_copy_var(int ncid_in, int varid, int ncid_out); extern int nc_put_var1_text(int ncid, int varid, const size_t *indexp, const char *op); extern int nc_get_var1_text(int ncid, int varid, const size_t *indexp, char *ip); extern int nc_put_var1_uchar(int ncid, int varid, const size_t *indexp, const unsigned char *op); extern int nc_get_var1_uchar(int ncid, int varid, const size_t *indexp, unsigned char *ip); extern int nc_put_var1_schar(int ncid, int varid, const size_t *indexp, const signed char *op); extern int nc_get_var1_schar(int ncid, int varid, const size_t *indexp, signed char *ip); extern int nc_put_var1_short(int ncid, int varid, const size_t *indexp, const short *op); extern int nc_get_var1_short(int ncid, int varid, const size_t *indexp, short *ip); extern int nc_put_var1_int(int ncid, int varid, const size_t *indexp, const int *op); extern int nc_get_var1_int(int ncid, int varid, const size_t *indexp, int *ip); extern int nc_put_var1_long(int ncid, int varid, const size_t *indexp, const long *op); extern int nc_get_var1_long(int ncid, int varid, const size_t *indexp, long *ip); extern int nc_put_var1_float(int ncid, int varid, const size_t *indexp, const float *op); extern int nc_get_var1_float(int ncid, int varid, const size_t *indexp, float *ip); extern int nc_put_var1_double(int ncid, int varid, const size_t *indexp, const double *op); extern int nc_get_var1_double(int ncid, int varid, const size_t *indexp, double *ip); extern int nc_put_var1_ushort(int ncid, int varid, const size_t *indexp, const unsigned short *op); extern int nc_get_var1_ushort(int ncid, int varid, const size_t *indexp, unsigned short *ip); extern int nc_put_var1_uint(int ncid, int varid, const size_t *indexp, const unsigned int *op); extern int nc_get_var1_uint(int ncid, int varid, const size_t *indexp, unsigned int *ip); extern int nc_put_var1_longlong(int ncid, int varid, const size_t *indexp, const long long *op); extern int nc_get_var1_longlong(int ncid, int varid, const size_t *indexp, long long *ip); extern int nc_put_var1_ulonglong(int ncid, int varid, const size_t *indexp, const unsigned long long *op); extern int nc_get_var1_ulonglong(int ncid, int varid, const size_t *indexp, unsigned long long *ip); extern int nc_put_var1_string(int ncid, int varid, const size_t *indexp, const char **op); extern int nc_get_var1_string(int ncid, int varid, const size_t *indexp, char **ip); extern int nc_put_vara_text(int ncid, int varid, const size_t *startp, const size_t *countp, const char *op); extern int nc_get_vara_text(int ncid, int varid, const size_t *startp, const size_t *countp, char *ip); extern int nc_put_vara_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned char *op); extern int nc_get_vara_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip); extern int nc_put_vara_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const signed char *op); extern int nc_get_vara_schar(int ncid, int varid, const size_t *startp, const size_t *countp, signed char *ip); extern int nc_put_vara_short(int ncid, int varid, const size_t *startp, const size_t *countp, const short *op); extern int nc_get_vara_short(int ncid, int varid, const size_t *startp, const size_t *countp, short *ip); extern int nc_put_vara_int(int ncid, int varid, const size_t *startp, const size_t *countp, const int *op); extern int nc_get_vara_int(int ncid, int varid, const size_t *startp, const size_t *countp, int *ip); extern int nc_put_vara_long(int ncid, int varid, const size_t *startp, const size_t *countp, const long *op); extern int nc_get_vara_long(int ncid, int varid, const size_t *startp, const size_t *countp, long *ip); extern int nc_put_vara_float(int ncid, int varid, const size_t *startp, const size_t *countp, const float *op); extern int nc_get_vara_float(int ncid, int varid, const size_t *startp, const size_t *countp, float *ip); extern int nc_put_vara_double(int ncid, int varid, const size_t *startp, const size_t *countp, const double *op); extern int nc_get_vara_double(int ncid, int varid, const size_t *startp, const size_t *countp, double *ip); extern int nc_put_vara_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned short *op); extern int nc_get_vara_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned short *ip); extern int nc_put_vara_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned int *op); extern int nc_get_vara_uint(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned int *ip); extern int nc_put_vara_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const long long *op); extern int nc_get_vara_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, long long *ip); extern int nc_put_vara_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned long long *op); extern int nc_get_vara_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned long long *ip); extern int nc_put_vara_string(int ncid, int varid, const size_t *startp, const size_t *countp, const char **op); extern int nc_get_vara_string(int ncid, int varid, const size_t *startp, const size_t *countp, char **ip); extern int nc_put_vars_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const char *op); extern int nc_get_vars_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, char *ip); extern int nc_put_vars_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned char *op); extern int nc_get_vars_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned char *ip); extern int nc_put_vars_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const signed char *op); extern int nc_get_vars_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, signed char *ip); extern int nc_put_vars_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const short *op); extern int nc_get_vars_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, short *ip); extern int nc_put_vars_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const int *op); extern int nc_get_vars_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, int *ip); extern int nc_put_vars_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const long *op); extern int nc_get_vars_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, long *ip); extern int nc_put_vars_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const float *op); extern int nc_get_vars_float(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, float *ip); extern int nc_put_vars_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const double *op); extern int nc_get_vars_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, double *ip); extern int nc_put_vars_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned short *op); extern int nc_get_vars_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned short *ip); extern int nc_put_vars_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned int *op); extern int nc_get_vars_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned int *ip); extern int nc_put_vars_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const long long *op); extern int nc_get_vars_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, long long *ip); extern int nc_put_vars_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned long long *op); extern int nc_get_vars_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned long long *ip); extern int nc_put_vars_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const char **op); extern int nc_get_vars_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, char **ip); extern int nc_put_varm_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const char *op); extern int nc_get_varm_text(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, char *ip); extern int nc_put_varm_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const unsigned char *op); extern int nc_get_varm_uchar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, unsigned char *ip); extern int nc_put_varm_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const signed char *op); extern int nc_get_varm_schar(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, signed char *ip); extern int nc_put_varm_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const short *op); extern int nc_get_varm_short(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, short *ip); extern int nc_put_varm_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const int *op); extern int nc_get_varm_int(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, int *ip); extern int nc_put_varm_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const long *op); extern int nc_get_varm_long(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, long *ip); extern int nc_put_varm_float(int ncid, int varid,const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const float *op); extern int nc_get_varm_float(int ncid, int varid,const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, float *ip); extern int nc_put_varm_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t *imapp, const double *op); extern int nc_get_varm_double(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, double *ip); extern int nc_put_varm_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned short *op); extern int nc_get_varm_ushort(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned short *ip); extern int nc_put_varm_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned int *op); extern int nc_get_varm_uint(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned int *ip); extern int nc_put_varm_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const long long *op); extern int nc_get_varm_longlong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, long long *ip); extern int nc_put_varm_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned long long *op); extern int nc_get_varm_ulonglong(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned long long *ip); extern int nc_put_varm_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const char **op); extern int nc_get_varm_string(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, char **ip); extern int nc_put_var_text(int ncid, int varid, const char *op); extern int nc_get_var_text(int ncid, int varid, char *ip); extern int nc_put_var_uchar(int ncid, int varid, const unsigned char *op); extern int nc_get_var_uchar(int ncid, int varid, unsigned char *ip); extern int nc_put_var_schar(int ncid, int varid, const signed char *op); extern int nc_get_var_schar(int ncid, int varid, signed char *ip); extern int nc_put_var_short(int ncid, int varid, const short *op); extern int nc_get_var_short(int ncid, int varid, short *ip); extern int nc_put_var_int(int ncid, int varid, const int *op); extern int nc_get_var_int(int ncid, int varid, int *ip); extern int nc_put_var_long(int ncid, int varid, const long *op); extern int nc_get_var_long(int ncid, int varid, long *ip); extern int nc_put_var_float(int ncid, int varid, const float *op); extern int nc_get_var_float(int ncid, int varid, float *ip); extern int nc_put_var_double(int ncid, int varid, const double *op); extern int nc_get_var_double(int ncid, int varid, double *ip); extern int nc_put_var_ushort(int ncid, int varid, const unsigned short *op); extern int nc_get_var_ushort(int ncid, int varid, unsigned short *ip); extern int nc_put_var_uint(int ncid, int varid, const unsigned int *op); extern int nc_get_var_uint(int ncid, int varid, unsigned int *ip); extern int nc_put_var_longlong(int ncid, int varid, const long long *op); extern int nc_get_var_longlong(int ncid, int varid, long long *ip); extern int nc_put_var_ulonglong(int ncid, int varid, const unsigned long long *op); extern int nc_get_var_ulonglong(int ncid, int varid, unsigned long long *ip); extern int nc_put_var_string(int ncid, int varid, const char **op); extern int nc_get_var_string(int ncid, int varid, char **ip); extern int nc_put_att_ubyte(int ncid, int varid, const char *name, nc_type xtype, size_t len, const unsigned char *op); extern int nc_get_att_ubyte(int ncid, int varid, const char *name, unsigned char *ip); extern int nc_put_var1_ubyte(int ncid, int varid, const size_t *indexp, const unsigned char *op); extern int nc_get_var1_ubyte(int ncid, int varid, const size_t *indexp, unsigned char *ip); extern int nc_put_vara_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const unsigned char *op); extern int nc_get_vara_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, unsigned char *ip); extern int nc_put_vars_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const unsigned char *op); extern int nc_get_vars_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, unsigned char *ip); extern int nc_put_varm_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, const unsigned char *op); extern int nc_get_varm_ubyte(int ncid, int varid, const size_t *startp, const size_t *countp, const ptrdiff_t *stridep, const ptrdiff_t * imapp, unsigned char *ip); extern int nc_put_var_ubyte(int ncid, int varid, const unsigned char *op); extern int nc_get_var_ubyte(int ncid, int varid, unsigned char *ip); # 1690 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern int nc_show_metadata(int ncid); extern int nc__create_mp(const char *path, int cmode, size_t initialsz, int basepe, size_t *chunksizehintp, int *ncidp); extern int nc__open_mp(const char *path, int mode, int basepe, size_t *chunksizehintp, int *ncidp); extern int nc_delete(const char *path); extern int nc_delete_mp(const char *path, int basepe); extern int nc_set_base_pe(int ncid, int pe); extern int nc_inq_base_pe(int ncid, int *pe); extern int nctypelen(nc_type datatype); # 1757 "/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include/netcdf.h" extern int ncerr; extern int ncopts; extern void nc_advise(const char *cdf_routine_name, int err, const char *fmt,...); typedef int nclong; extern int nccreate(const char* path, int cmode); extern int ncopen(const char* path, int mode); extern int ncsetfill(int ncid, int fillmode); extern int ncredef(int ncid); extern int ncendef(int ncid); extern int ncsync(int ncid); extern int ncabort(int ncid); extern int ncclose(int ncid); extern int ncinquire(int ncid, int *ndimsp, int *nvarsp, int *nattsp, int *unlimdimp); extern int ncdimdef(int ncid, const char *name, long len); extern int ncdimid(int ncid, const char *name); extern int ncdiminq(int ncid, int dimid, char *name, long *lenp); extern int ncdimrename(int ncid, int dimid, const char *name); extern int ncattput(int ncid, int varid, const char *name, nc_type xtype, int len, const void *op); extern int ncattinq(int ncid, int varid, const char *name, nc_type *xtypep, int *lenp); extern int ncattget(int ncid, int varid, const char *name, void *ip); extern int ncattcopy(int ncid_in, int varid_in, const char *name, int ncid_out, int varid_out); extern int ncattname(int ncid, int varid, int attnum, char *name); extern int ncattrename(int ncid, int varid, const char *name, const char *newname); extern int ncattdel(int ncid, int varid, const char *name); extern int ncvardef(int ncid, const char *name, nc_type xtype, int ndims, const int *dimidsp); extern int ncvarid(int ncid, const char *name); extern int ncvarinq(int ncid, int varid, char *name, nc_type *xtypep, int *ndimsp, int *dimidsp, int *nattsp); extern int ncvarput1(int ncid, int varid, const long *indexp, const void *op); extern int ncvarget1(int ncid, int varid, const long *indexp, void *ip); extern int ncvarput(int ncid, int varid, const long *startp, const long *countp, const void *op); extern int ncvarget(int ncid, int varid, const long *startp, const long *countp, void *ip); extern int ncvarputs(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const void *op); extern int ncvargets(int ncid, int varid, const long *startp, const long *countp, const long *stridep, void *ip); extern int ncvarputg(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const long *imapp, const void *op); extern int ncvargetg(int ncid, int varid, const long *startp, const long *countp, const long *stridep, const long *imapp, void *ip); extern int ncvarrename(int ncid, int varid, const char *name); extern int ncrecinq(int ncid, int *nrecvarsp, int *recvaridsp, long *recsizesp); extern int ncrecget(int ncid, long recnum, void **datap); extern int ncrecput(int ncid, long recnum, void *const *datap); } # 47 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" 2 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" 2 # 1 "/usr/include/stdlib.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 34 "/usr/include/stdlib.h" 2 3 extern "C" { # 1 "/usr/include/bits/waitflags.h" 1 3 # 43 "/usr/include/stdlib.h" 2 3 # 1 "/usr/include/bits/waitstatus.h" 1 3 # 1 "/usr/include/endian.h" 1 3 # 1 "/usr/include/bits/endian.h" 1 3 # 38 "/usr/include/endian.h" 2 3 # 51 "/usr/include/endian.h" 3 # 1 "/usr/include/bits/byteswap.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/byteswap.h" 2 3 # 53 "/usr/include/bits/byteswap.h" 3 # 67 "/usr/include/bits/byteswap.h" 3 # 97 "/usr/include/bits/byteswap.h" 3 # 110 "/usr/include/bits/byteswap.h" 3 # 136 "/usr/include/bits/byteswap.h" 3 # 62 "/usr/include/endian.h" 2 3 # 95 "/usr/include/endian.h" 3 # 66 "/usr/include/bits/waitstatus.h" 2 3 union wait { int w_status; struct { unsigned int __w_termsig:7; unsigned int __w_coredump:1; unsigned int __w_retcode:8; unsigned int:16; # 84 "/usr/include/bits/waitstatus.h" 3 } __wait_terminated; struct { unsigned int __w_stopval:8; unsigned int __w_stopsig:8; unsigned int:16; # 97 "/usr/include/bits/waitstatus.h" 3 } __wait_stopped; }; # 44 "/usr/include/stdlib.h" 2 3 # 57 "/usr/include/stdlib.h" 3 # 75 "/usr/include/stdlib.h" 3 # 83 "/usr/include/stdlib.h" 3 # 95 "/usr/include/stdlib.h" 3 typedef struct { int quot; int rem; } div_t; typedef struct { long int quot; long int rem; } ldiv_t; __extension__ typedef struct { long long int quot; long long int rem; } lldiv_t; extern size_t __ctype_get_mb_cur_max (void) throw () ; extern double atof (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern int atoi (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern long int atol (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int atoll (__const char *__nptr) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; extern double strtod (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern float strtof (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long double strtold (__const char *__restrict __nptr, char **__restrict __endptr) throw () __attribute__ ((__nonnull__ (1))) ; extern long int strtol (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; extern unsigned long int strtoul (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtouq (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern long long int strtoll (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; __extension__ extern unsigned long long int strtoull (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw () __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/xlocale.h" 1 3 typedef struct __locale_struct { struct __locale_data *__locales[13]; const unsigned short int *__ctype_b; const int *__ctype_tolower; const int *__ctype_toupper; const char *__names[13]; } *__locale_t; typedef __locale_t locale_t; # 237 "/usr/include/stdlib.h" 2 3 extern long int strtol_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern unsigned long int strtoul_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern long long int strtoll_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; __extension__ extern unsigned long long int strtoull_l (__const char *__restrict __nptr, char **__restrict __endptr, int __base, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 4))) ; extern double strtod_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern float strtof_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; extern long double strtold_l (__const char *__restrict __nptr, char **__restrict __endptr, __locale_t __loc) throw () __attribute__ ((__nonnull__ (1, 3))) ; # 305 "/usr/include/stdlib.h" 3 extern char *l64a (long int __n) throw () ; extern long int a64l (__const char *__s) throw () __attribute__ ((__pure__)) __attribute__ ((__nonnull__ (1))) ; # 1 "/usr/include/sys/types.h" 1 3 extern "C" { # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 31 "/usr/include/sys/types.h" 2 3 typedef __u_char u_char; typedef __u_short u_short; typedef __u_int u_int; typedef __u_long u_long; typedef __quad_t quad_t; typedef __u_quad_t u_quad_t; typedef __fsid_t fsid_t; typedef __loff_t loff_t; typedef __ino_t ino_t; # 56 "/usr/include/sys/types.h" 3 typedef __ino64_t ino64_t; typedef __dev_t dev_t; typedef __gid_t gid_t; typedef __mode_t mode_t; typedef __nlink_t nlink_t; typedef __uid_t uid_t; typedef __off_t off_t; # 94 "/usr/include/sys/types.h" 3 typedef __off64_t off64_t; typedef __pid_t pid_t; typedef __id_t id_t; typedef __ssize_t ssize_t; typedef __daddr_t daddr_t; typedef __caddr_t caddr_t; typedef __key_t key_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 typedef __clock_t clock_t; typedef __time_t time_t; typedef __clockid_t clockid_t; typedef __timer_t timer_t; # 128 "/usr/include/time.h" 3 # 420 "/usr/include/time.h" 3 # 134 "/usr/include/sys/types.h" 2 3 typedef __useconds_t useconds_t; typedef __suseconds_t suseconds_t; # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 148 "/usr/include/sys/types.h" 2 3 typedef unsigned long int ulong; typedef unsigned short int ushort; typedef unsigned int uint; # 186 "/usr/include/sys/types.h" 3 typedef int int8_t __attribute__ ((__mode__ (__QI__))); typedef int int16_t __attribute__ ((__mode__ (__HI__))); typedef int int32_t __attribute__ ((__mode__ (__SI__))); typedef int int64_t __attribute__ ((__mode__ (__DI__))); typedef unsigned int u_int8_t __attribute__ ((__mode__ (__QI__))); typedef unsigned int u_int16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int u_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int u_int64_t __attribute__ ((__mode__ (__DI__))); typedef int register_t __attribute__ ((__mode__ (__word__))); # 1 "/usr/include/sys/select.h" 1 3 # 1 "/usr/include/bits/select.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/select.h" 2 3 # 44 "/usr/include/bits/select.h" 3 # 58 "/usr/include/bits/select.h" 3 # 32 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/sigset.h" 1 3 typedef int __sig_atomic_t; typedef struct { unsigned long int __val[(1024 / (8 * sizeof (unsigned long int)))]; } __sigset_t; # 35 "/usr/include/sys/select.h" 2 3 typedef __sigset_t sigset_t; # 1 "/usr/include/time.h" 1 3 # 33 "/usr/include/time.h" 3 # 52 "/usr/include/time.h" 3 # 68 "/usr/include/time.h" 3 # 84 "/usr/include/time.h" 3 # 96 "/usr/include/time.h" 3 # 108 "/usr/include/time.h" 3 struct timespec { __time_t tv_sec; long int tv_nsec; }; # 420 "/usr/include/time.h" 3 # 45 "/usr/include/sys/select.h" 2 3 # 1 "/usr/include/bits/time.h" 1 3 # 66 "/usr/include/bits/time.h" 3 struct timeval { __time_t tv_sec; __suseconds_t tv_usec; }; # 47 "/usr/include/sys/select.h" 2 3 typedef long int __fd_mask; typedef struct { __fd_mask fds_bits[1024 / (8 * (int) sizeof (__fd_mask))]; } fd_set; typedef __fd_mask fd_mask; extern "C" { extern int select (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, struct timeval *__restrict __timeout); extern int pselect (int __nfds, fd_set *__restrict __readfds, fd_set *__restrict __writefds, fd_set *__restrict __exceptfds, const struct timespec *__restrict __timeout, const __sigset_t *__restrict __sigmask); } # 221 "/usr/include/sys/types.h" 2 3 # 1 "/usr/include/sys/sysmacros.h" 1 3 __extension__ extern unsigned int gnu_dev_major (unsigned long long int __dev) throw (); __extension__ extern unsigned int gnu_dev_minor (unsigned long long int __dev) throw (); __extension__ extern unsigned long long int gnu_dev_makedev (unsigned int __major, unsigned int __minor) throw (); # 62 "/usr/include/sys/sysmacros.h" 3 # 224 "/usr/include/sys/types.h" 2 3 typedef __blksize_t blksize_t; typedef __blkcnt_t blkcnt_t; typedef __fsblkcnt_t fsblkcnt_t; typedef __fsfilcnt_t fsfilcnt_t; # 261 "/usr/include/sys/types.h" 3 typedef __blkcnt64_t blkcnt64_t; typedef __fsblkcnt64_t fsblkcnt64_t; typedef __fsfilcnt64_t fsfilcnt64_t; # 1 "/usr/include/bits/pthreadtypes.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 24 "/usr/include/bits/pthreadtypes.h" 2 3 # 46 "/usr/include/bits/pthreadtypes.h" 3 typedef unsigned long int pthread_t; typedef union { char __size[56]; long int __align; } pthread_attr_t; typedef struct __pthread_internal_list { struct __pthread_internal_list *__prev; struct __pthread_internal_list *__next; } __pthread_list_t; # 72 "/usr/include/bits/pthreadtypes.h" 3 typedef union { struct __pthread_mutex_s { int __lock; unsigned int __count; int __owner; unsigned int __nusers; int __kind; int __spins; __pthread_list_t __list; # 101 "/usr/include/bits/pthreadtypes.h" 3 } __data; char __size[40]; long int __align; } pthread_mutex_t; typedef union { char __size[4]; int __align; } pthread_mutexattr_t; typedef union { struct { int __lock; unsigned int __futex; __extension__ unsigned long long int __total_seq; __extension__ unsigned long long int __wakeup_seq; __extension__ unsigned long long int __woken_seq; void *__mutex; unsigned int __nwaiters; unsigned int __broadcast_seq; } __data; char __size[48]; __extension__ long long int __align; } pthread_cond_t; typedef union { char __size[4]; int __align; } pthread_condattr_t; typedef unsigned int pthread_key_t; typedef int pthread_once_t; typedef union { struct { int __lock; unsigned int __nr_readers; unsigned int __readers_wakeup; unsigned int __writer_wakeup; unsigned int __nr_readers_queued; unsigned int __nr_writers_queued; int __writer; int __shared; unsigned long int __pad1; unsigned long int __pad2; unsigned int __flags; } __data; # 187 "/usr/include/bits/pthreadtypes.h" 3 char __size[56]; long int __align; } pthread_rwlock_t; typedef union { char __size[8]; long int __align; } pthread_rwlockattr_t; typedef volatile int pthread_spinlock_t; typedef union { char __size[32]; long int __align; } pthread_barrier_t; typedef union { char __size[4]; int __align; } pthread_barrierattr_t; # 272 "/usr/include/sys/types.h" 2 3 } # 321 "/usr/include/stdlib.h" 2 3 extern long int random (void) throw (); extern void srandom (unsigned int __seed) throw (); extern char *initstate (unsigned int __seed, char *__statebuf, size_t __statelen) throw () __attribute__ ((__nonnull__ (2))); extern char *setstate (char *__statebuf) throw () __attribute__ ((__nonnull__ (1))); struct random_data { int32_t *fptr; int32_t *rptr; int32_t *state; int rand_type; int rand_deg; int rand_sep; int32_t *end_ptr; }; extern int random_r (struct random_data *__restrict __buf, int32_t *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srandom_r (unsigned int __seed, struct random_data *__buf) throw () __attribute__ ((__nonnull__ (2))); extern int initstate_r (unsigned int __seed, char *__restrict __statebuf, size_t __statelen, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (2, 4))); extern int setstate_r (char *__restrict __statebuf, struct random_data *__restrict __buf) throw () __attribute__ ((__nonnull__ (1, 2))); extern int rand (void) throw (); extern void srand (unsigned int __seed) throw (); extern int rand_r (unsigned int *__seed) throw (); extern double drand48 (void) throw (); extern double erand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int lrand48 (void) throw (); extern long int nrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern long int mrand48 (void) throw (); extern long int jrand48 (unsigned short int __xsubi[3]) throw () __attribute__ ((__nonnull__ (1))); extern void srand48 (long int __seedval) throw (); extern unsigned short int *seed48 (unsigned short int __seed16v[3]) throw () __attribute__ ((__nonnull__ (1))); extern void lcong48 (unsigned short int __param[7]) throw () __attribute__ ((__nonnull__ (1))); struct drand48_data { unsigned short int __x[3]; unsigned short int __old_x[3]; unsigned short int __c; unsigned short int __init; unsigned long long int __a; }; extern int drand48_r (struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int erand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, double *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int nrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int mrand48_r (struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int jrand48_r (unsigned short int __xsubi[3], struct drand48_data *__restrict __buffer, long int *__restrict __result) throw () __attribute__ ((__nonnull__ (1, 2))); extern int srand48_r (long int __seedval, struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (2))); extern int seed48_r (unsigned short int __seed16v[3], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern int lcong48_r (unsigned short int __param[7], struct drand48_data *__buffer) throw () __attribute__ ((__nonnull__ (1, 2))); extern void *malloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *calloc (size_t __nmemb, size_t __size) throw () __attribute__ ((__malloc__)) ; extern void *realloc (void *__ptr, size_t __size) throw () __attribute__ ((__warn_unused_result__)); extern void free (void *__ptr) throw (); extern void cfree (void *__ptr) throw (); # 1 "/usr/include/alloca.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 26 "/usr/include/alloca.h" 2 3 extern "C" { extern void *alloca (size_t __size) throw (); } # 498 "/usr/include/stdlib.h" 2 3 extern void *valloc (size_t __size) throw () __attribute__ ((__malloc__)) ; extern int posix_memalign (void **__memptr, size_t __alignment, size_t __size) throw () __attribute__ ((__nonnull__ (1))) ; extern void abort (void) throw () __attribute__ ((__noreturn__)); extern int atexit (void (*__func) (void)) throw () __attribute__ ((__nonnull__ (1))); extern "C++" int at_quick_exit (void (*__func) (void)) throw () __asm ("at_quick_exit") __attribute__ ((__nonnull__ (1))); extern int on_exit (void (*__func) (int __status, void *__arg), void *__arg) throw () __attribute__ ((__nonnull__ (1))); extern void exit (int __status) throw () __attribute__ ((__noreturn__)); extern void quick_exit (int __status) throw () __attribute__ ((__noreturn__)); extern void _Exit (int __status) throw () __attribute__ ((__noreturn__)); extern char *getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *__secure_getenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern int putenv (char *__string) throw () __attribute__ ((__nonnull__ (1))); extern int setenv (__const char *__name, __const char *__value, int __replace) throw () __attribute__ ((__nonnull__ (2))); extern int unsetenv (__const char *__name) throw () __attribute__ ((__nonnull__ (1))); extern int clearenv (void) throw (); extern char *mktemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkstemp (char *__template) __attribute__ ((__nonnull__ (1))) ; # 630 "/usr/include/stdlib.h" 3 extern int mkstemp64 (char *__template) __attribute__ ((__nonnull__ (1))) ; extern int mkstemps (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; # 652 "/usr/include/stdlib.h" 3 extern int mkstemps64 (char *__template, int __suffixlen) __attribute__ ((__nonnull__ (1))) ; extern char *mkdtemp (char *__template) throw () __attribute__ ((__nonnull__ (1))) ; extern int mkostemp (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; # 684 "/usr/include/stdlib.h" 3 extern int mkostemp64 (char *__template, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int mkostemps (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; # 706 "/usr/include/stdlib.h" 3 extern int mkostemps64 (char *__template, int __suffixlen, int __flags) __attribute__ ((__nonnull__ (1))) ; extern int system (__const char *__command) ; extern char *canonicalize_file_name (__const char *__name) throw () __attribute__ ((__nonnull__ (1))) ; extern char *realpath (__const char *__restrict __name, char *__restrict __resolved) throw () ; typedef int (*__compar_fn_t) (__const void *, __const void *); typedef __compar_fn_t comparison_fn_t; typedef int (*__compar_d_fn_t) (__const void *, __const void *, void *); extern void *bsearch (__const void *__key, __const void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 2, 5))) ; extern void qsort (void *__base, size_t __nmemb, size_t __size, __compar_fn_t __compar) __attribute__ ((__nonnull__ (1, 4))); extern void qsort_r (void *__base, size_t __nmemb, size_t __size, __compar_d_fn_t __compar, void *__arg) __attribute__ ((__nonnull__ (1, 4))); extern int abs (int __x) throw () __attribute__ ((__const__)) ; extern long int labs (long int __x) throw () __attribute__ ((__const__)) ; __extension__ extern long long int llabs (long long int __x) throw () __attribute__ ((__const__)) ; extern div_t div (int __numer, int __denom) throw () __attribute__ ((__const__)) ; extern ldiv_t ldiv (long int __numer, long int __denom) throw () __attribute__ ((__const__)) ; __extension__ extern lldiv_t lldiv (long long int __numer, long long int __denom) throw () __attribute__ ((__const__)) ; extern char *ecvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *fcvt (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *gcvt (double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern char *qecvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qfcvt (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign) throw () __attribute__ ((__nonnull__ (3, 4))) ; extern char *qgcvt (long double __value, int __ndigit, char *__buf) throw () __attribute__ ((__nonnull__ (3))) ; extern int ecvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int fcvt_r (double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qecvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int qfcvt_r (long double __value, int __ndigit, int *__restrict __decpt, int *__restrict __sign, char *__restrict __buf, size_t __len) throw () __attribute__ ((__nonnull__ (3, 4, 5))); extern int mblen (__const char *__s, size_t __n) throw () ; extern int mbtowc (wchar_t *__restrict __pwc, __const char *__restrict __s, size_t __n) throw () ; extern int wctomb (char *__s, wchar_t __wchar) throw () ; extern size_t mbstowcs (wchar_t *__restrict __pwcs, __const char *__restrict __s, size_t __n) throw (); extern size_t wcstombs (char *__restrict __s, __const wchar_t *__restrict __pwcs, size_t __n) throw (); extern int rpmatch (__const char *__response) throw () __attribute__ ((__nonnull__ (1))) ; extern int getsubopt (char **__restrict __optionp, char *__const *__restrict __tokens, char **__restrict __valuep) throw () __attribute__ ((__nonnull__ (1, 2, 3))) ; extern void setkey (__const char *__key) throw () __attribute__ ((__nonnull__ (1))); extern int posix_openpt (int __oflag) ; extern int grantpt (int __fd) throw (); extern int unlockpt (int __fd) throw (); extern char *ptsname (int __fd) throw () ; extern int ptsname_r (int __fd, char *__buf, size_t __buflen) throw () __attribute__ ((__nonnull__ (2))); extern int getpt (void); extern int getloadavg (double __loadavg[], int __nelem) throw () __attribute__ ((__nonnull__ (1))); # 960 "/usr/include/stdlib.h" 3 } # 54 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" 2 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 # 47 "/usr/include/stdint.h" 3 typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 283 "/usr/include/stdint.h" 3 # 319 "/usr/include/stdint.h" 3 # 55 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" 2 # 67 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" extern "C" { # 105 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" enum ex_inquiry { EX_INQ_FILE_TYPE = 1, EX_INQ_API_VERS = 2, EX_INQ_DB_VERS = 3, EX_INQ_TITLE = 4, EX_INQ_DIM = 5, EX_INQ_NODES = 6, EX_INQ_ELEM = 7, EX_INQ_ELEM_BLK = 8, EX_INQ_NODE_SETS = 9, EX_INQ_NS_NODE_LEN = 10, EX_INQ_SIDE_SETS = 11, EX_INQ_SS_NODE_LEN = 12, EX_INQ_SS_ELEM_LEN = 13, EX_INQ_QA = 14, EX_INQ_INFO = 15, EX_INQ_TIME = 16, EX_INQ_EB_PROP = 17, EX_INQ_NS_PROP = 18, EX_INQ_SS_PROP = 19, EX_INQ_NS_DF_LEN = 20, EX_INQ_SS_DF_LEN = 21, EX_INQ_LIB_VERS = 22, EX_INQ_EM_PROP = 23, EX_INQ_NM_PROP = 24, EX_INQ_ELEM_MAP = 25, EX_INQ_NODE_MAP = 26, EX_INQ_EDGE = 27, EX_INQ_EDGE_BLK = 28, EX_INQ_EDGE_SETS = 29, EX_INQ_ES_LEN = 30, EX_INQ_ES_DF_LEN = 31, EX_INQ_EDGE_PROP = 32, EX_INQ_ES_PROP = 33, EX_INQ_FACE = 34, EX_INQ_FACE_BLK = 35, EX_INQ_FACE_SETS = 36, EX_INQ_FS_LEN = 37, EX_INQ_FS_DF_LEN = 38, EX_INQ_FACE_PROP = 39, EX_INQ_FS_PROP = 40, EX_INQ_ELEM_SETS = 41, EX_INQ_ELS_LEN = 42, EX_INQ_ELS_DF_LEN = 43, EX_INQ_ELS_PROP = 44, EX_INQ_EDGE_MAP = 45, EX_INQ_FACE_MAP = 46, EX_INQ_COORD_FRAMES = 47, EX_INQ_DB_MAX_ALLOWED_NAME_LENGTH = 48, EX_INQ_DB_MAX_USED_NAME_LENGTH = 49, EX_INQ_MAX_READ_NAME_LENGTH = 50, EX_INQ_INVALID = -1}; typedef enum ex_inquiry ex_inquiry; enum ex_option_type { EX_OPT_MAX_NAME_LENGTH = 1, EX_OPT_COMPRESSION_TYPE, EX_OPT_COMPRESSION_LEVEL, EX_OPT_COMPRESSION_SHUFFLE, EX_OPT_INTEGER_SIZE_API, EX_OPT_INTEGER_SIZE_DB }; typedef enum ex_option_type ex_option_type; enum ex_entity_type { EX_NODAL = 14, EX_NODE_BLOCK = 14, EX_NODE_SET = 2, EX_EDGE_BLOCK = 6, EX_EDGE_SET = 7, EX_FACE_BLOCK = 8, EX_FACE_SET = 9, EX_ELEM_BLOCK = 1, EX_ELEM_SET = 10, EX_SIDE_SET = 3, EX_ELEM_MAP = 4, EX_NODE_MAP = 5, EX_EDGE_MAP = 11, EX_FACE_MAP = 12, EX_GLOBAL = 13, EX_COORDINATE = 15, EX_INVALID = -1}; typedef enum ex_entity_type ex_entity_type; enum ex_options { EX_DEFAULT = 0, EX_VERBOSE = 1, EX_DEBUG = 2, EX_ABORT = 4 }; typedef enum ex_options ex_options; typedef int64_t ex_entity_id; typedef void void_int; typedef struct ex_init_params { char title[80L + 1]; int64_t num_dim; int64_t num_nodes; int64_t num_edge; int64_t num_edge_blk; int64_t num_face; int64_t num_face_blk; int64_t num_elem; int64_t num_elem_blk; int64_t num_node_sets; int64_t num_edge_sets; int64_t num_face_sets; int64_t num_side_sets; int64_t num_elem_sets; int64_t num_node_maps; int64_t num_edge_maps; int64_t num_face_maps; int64_t num_elem_maps; } ex_init_params; typedef struct ex_block { int64_t id; ex_entity_type type; char topology[32L+1]; int64_t num_entry; int64_t num_nodes_per_entry; int64_t num_edges_per_entry; int64_t num_faces_per_entry; int64_t num_attribute; } ex_block; typedef struct ex_set { int64_t id; ex_entity_type type; int64_t num_entry; int64_t num_distribution_factor; void_int* entry_list; void_int* extra_list; void* distribution_factor_list; } ex_set; typedef struct ex_block_params { void_int* edge_blk_id; char** edge_type; int* num_edge_this_blk; int* num_nodes_per_edge; int* num_attr_edge; void_int* face_blk_id; char** face_type; int* num_face_this_blk; int* num_nodes_per_face; int* num_attr_face; void_int* elem_blk_id; char** elem_type; int* num_elem_this_blk; int* num_nodes_per_elem; int* num_edges_per_elem; int* num_faces_per_elem; int* num_attr_elem; int define_maps; } ex_block_params; typedef struct ex_set_specs { void_int* sets_ids; void_int* num_entries_per_set; void_int* num_dist_per_set; void_int* sets_entry_index; void_int* sets_dist_index; void_int* sets_entry_list; void_int* sets_extra_list; void* sets_dist_fact; } ex_set_specs; typedef struct ex_var_params { int num_glob; int num_node; int num_edge; int* edge_var_tab; int num_face; int* face_var_tab; int num_elem; int* elem_var_tab; int num_nset; int* nset_var_tab; int num_eset; int* eset_var_tab; int num_fset; int* fset_var_tab; int num_sset; int* sset_var_tab; int num_elset; int* elset_var_tab; } ex_var_params; extern int ex_close (int exoid); extern int ex_copy (int in_exoid, int out_exoid); extern int ex_create_int (const char *path, int cmode, int *comp_ws, int *io_ws, int my_version); extern int ex_get_all_times (int exoid, void *time_values); extern int ex_get_coord_names (int exoid, char **coord_names); extern int ex_get_coord (int exoid, void *x_coor, void *y_coor, void *z_coor); extern int ex_get_n_coord (int exoid, int64_t start_node_num, int64_t num_nodes, void *x_coor, void *y_coor, void *z_coor); extern int ex_get_partial_coord (int exoid, int64_t start_node_num, int64_t num_nodes, void *x_coor, void *y_coor, void *z_coor); extern int ex_get_ids (int exoid, ex_entity_type obj_type, void_int *ids); extern int ex_get_coordinate_frames(int exoid, int *nframes, void_int *cf_ids, void* pt_coordinates, char* tags); extern int ex_get_glob_vars (int exoid, int time_step, int num_glob_vars, void *glob_var_vals); extern int ex_get_glob_var_time (int exoid, int glob_var_index, int beg_time_step, int end_time_step, void *glob_var_vals); extern int ex_get_info (int exoid, char **info); extern int ex_put_init_ext (int exoid, const ex_init_params *param); extern int ex_get_init_ext (int exoid, ex_init_params *param); extern int ex_get_init (int exoid, char *title, void_int *num_dim, void_int *num_nodes, void_int *num_elem, void_int *num_elem_blk, void_int *num_node_sets, void_int *num_side_sets); extern int ex_put_init (int exoid, const char *title, int64_t num_dim, int64_t num_nodes, int64_t num_elem, int64_t num_elem_blk, int64_t num_node_sets, int64_t num_side_sets); extern int ex_get_map_param (int exoid, int *num_node_maps, int *num_elem_maps); extern int ex_get_name (int exoid, ex_entity_type obj_type, ex_entity_id entity_id, char *name); extern int ex_get_names (int exoid, ex_entity_type obj_type, char **names); extern int ex_get_nset_var_tab (int exoid, int num_nodesets, int num_nset_var, int *nset_var_tab); extern int ex_get_n_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t start_node, int64_t num_nodes, void *nodal_var_vals); extern int ex_get_partial_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t start_node, int64_t num_nodes, void *nodal_var_vals); extern int ex_get_prop_array (int exoid, ex_entity_type obj_type, const char *prop_name, void_int *values); extern int ex_get_prop (int exoid, ex_entity_type obj_type, ex_entity_id obj_id, const char *prop_name, void_int *value); extern int ex_get_partial_num_map (int exoid, ex_entity_type map_type, ex_entity_id map_id, int64_t ent_start, int64_t ent_count, void_int *elem_map); extern int ex_get_prop_names (int exoid, ex_entity_type obj_type, char **prop_names); extern int ex_get_qa (int exoid, char *qa_record[][4]); extern int ex_get_time (int exoid, int time_step, void *time_value); extern int ex_get_variable_names (int exoid, ex_entity_type obj_type, int num_vars, char *var_names[]); extern int ex_get_variable_name (int exoid, ex_entity_type obj_type, int var_num, char *var_name); extern int ex_get_variable_param (int exoid, ex_entity_type obj_type, int *num_vars); extern int ex_get_object_truth_vector (int exoid, ex_entity_type var_type, ex_entity_id object_id, int num_var, int *var_vector); extern int ex_get_truth_table (int exoid, ex_entity_type obj_type, int num_blk, int num_var, int *var_tab); extern int ex_open_int (const char *path, int mode, int *comp_ws, int *io_ws, float *version, int my_version); extern int ex_put_attr_param (int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int num_attrs); extern int ex_get_attr_param (int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int *num_attrs); extern int ex_put_all_var_param (int exoid, int num_g, int num_n, int num_e, int *elem_var_tab, int num_m, int *nset_var_tab, int num_s, int *sset_var_tab); extern int ex_put_concat_elem_block (int exoid, const void_int* elem_blk_id, char *elem_type[], const void_int* num_elem_this_blk, const void_int* num_nodes_per_elem, const void_int* num_attr, int define_maps); extern int ex_put_coord_names (int exoid, char *coord_names[]); extern int ex_put_coord (int exoid, const void *x_coor, const void *y_coor, const void *z_coor); extern int ex_put_n_coord (int exoid, int64_t start_node_num, int64_t num_nodes, const void *x_coor, const void *y_coor, const void *z_coor); extern int ex_put_partial_coord (int exoid, int64_t start_node_num, int64_t num_nodes, const void *x_coor, const void *y_coor, const void *z_coor); extern int ex_put_id_map(int exoid, ex_entity_type obj_type, const void_int *map); extern int ex_put_partial_id_map(int exoid, ex_entity_type obj_type, int64_t start_entity_num, int64_t num_entities, const void_int *map); extern int ex_put_n_elem_num_map (int exoid, int64_t start_ent, int64_t num_ents, const void_int *map); extern int ex_put_n_node_num_map (int exoid, int64_t start_ent, int64_t num_ents, const void_int *map); extern int ex_put_partial_elem_num_map (int exoid, int64_t start_ent, int64_t num_ents, const void_int *map); extern int ex_put_partial_node_num_map (int exoid, int64_t start_ent, int64_t num_ents, const void_int *map); extern int ex_get_id_map(int exoid, ex_entity_type obj_type, void_int *map); extern int ex_get_partial_id_map (int exoid, ex_entity_type map_type, int64_t start_entity_num, int64_t num_entities, void_int* map); extern int ex_put_coordinate_frames(int exoid, int nframes, const void_int *cf_ids, void* pt_coordinates, const char* tags); extern int ex_put_info (int exoid, int num_info, char *info[]); extern int ex_put_map_param (int exoid, int num_node_maps, int num_elem_maps); extern int ex_put_name (int exoid, ex_entity_type obj_type, ex_entity_id entity_id, const char *name); extern int ex_put_names (int exoid, ex_entity_type obj_type, char *names[]); extern int ex_put_n_one_attr( int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, int attrib_index, const void *attrib ); extern int ex_put_partial_one_attr( int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, int attrib_index, const void *attrib ); extern int ex_put_prop (int exoid, ex_entity_type obj_type, ex_entity_id obj_id, const char *prop_name, ex_entity_id value); extern int ex_put_prop_array (int exoid, ex_entity_type obj_type, const char *prop_name, const void_int *values); extern int ex_put_prop_names (int exoid, ex_entity_type obj_type, int num_props, char **prop_names); extern int ex_put_qa (int exoid, int num_qa_records, char* qa_record[][4]); extern int ex_put_time (int exoid, int time_step, const void *time_value); extern int ex_put_variable_name (int exoid, ex_entity_type obj_type, int var_num, const char *var_name); extern int ex_put_variable_names (int exoid, ex_entity_type obj_type, int num_vars, char* var_names[]); extern int ex_put_variable_param (int exoid, ex_entity_type obj_type, int num_vars); extern int ex_put_truth_table (int exoid, ex_entity_type obj_type, int num_blk, int num_var, int *var_tab); extern int ex_update (int exoid); extern int ex_get_num_props (int exoid, ex_entity_type obj_type); extern int ex_large_model(int exoid); extern size_t ex_header_size(int exoid); extern void ex_err(const char *module_name, const char *message, int err_num); extern void ex_get_err(const char** msg, const char** func, int* errcode); extern void ex_opts(int options); extern int ex_inquire(int exoid, int inquiry, void_int*, float*, char*); extern int64_t ex_inquire_int(int exoid, int inquiry); extern int ex_int64_status(int exoid); extern int ex_set_int64_status(int exoid, int mode); extern int ex_set_max_name_length(int exoid, int length); extern int ex_set_option(int exoid, ex_option_type option, int option_value); extern int ex_put_num_map(int exoid, ex_entity_type map_type, ex_entity_id map_id, const void_int *map); extern int ex_get_num_map(int exoid, ex_entity_type map_type, ex_entity_id map_id, void_int *map); extern int ex_put_block(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const char *entry_descrip, int64_t num_entries_this_blk, int64_t num_nodes_per_entry, int64_t num_edges_per_entry, int64_t num_faces_per_entry, int64_t num_attr_per_entry); extern int ex_get_block(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, char *elem_type, void_int *num_entries_this_blk, void_int *num_nodes_per_entry, void_int *num_edges_per_entry, void_int *num_faces_per_entry, void_int *num_attr_per_entry); extern int ex_get_block_param(int exoid, ex_block *block); extern int ex_put_block_param(int exoid, const ex_block block); extern int ex_put_concat_all_blocks(int exoid, const ex_block_params *param); extern int ex_put_entity_count_per_polyhedra(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const int *entity_counts); extern int ex_get_entity_count_per_polyhedra(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, int *entity_counts); extern int ex_put_conn(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const void_int *node_conn, const void_int *elem_edge_conn, const void_int *elem_face_conn); extern int ex_get_conn(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, void_int *nodeconn, void_int *edgeconn, void_int *faceconn); extern int ex_get_n_conn(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, int64_t start_num, int64_t num_ent, void_int *nodeconn, void_int *edgeconn, void_int *faceconn); extern int ex_get_partial_conn(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, int64_t start_num, int64_t num_ent, void_int *nodeconn, void_int *edgeconn, void_int *faceconn); extern int ex_put_attr(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, const void *attrib); extern int ex_put_partial_attr (int exoid, ex_entity_type blk_type, ex_entity_id blk_id, int64_t start_entity, int64_t num_entity, const void *attrib); extern int ex_get_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, void *attrib); extern int ex_get_n_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, void *attrib); extern int ex_get_partial_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, void *attrib); extern int ex_put_one_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int attrib_index, const void *attrib); extern int ex_get_one_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int attrib_index, void *attrib); extern int ex_get_n_one_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, int attrib_index, void *attrib); extern int ex_get_partial_one_attr(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, int64_t start_num, int64_t num_ent, int attrib_index, void *attrib); extern int ex_put_attr_names(int exoid, ex_entity_type blk_type, ex_entity_id blk_id, char **names); extern int ex_get_attr_names(int exoid, ex_entity_type obj_type, ex_entity_id obj_id, char **names); extern int ex_put_set_param(int exoid, ex_entity_type set_type, ex_entity_id set_id, int64_t num_entries_in_set, int64_t num_dist_fact_in_set); extern int ex_get_set_param(int exoid, ex_entity_type set_type, ex_entity_id set_id, void_int *num_entry_in_set, void_int *num_dist_fact_in_set); extern int ex_put_set(int exoid, ex_entity_type set_type, ex_entity_id set_id, const void_int *set_entry_list, const void_int *set_extra_list); extern int ex_put_partial_set(int exoid, ex_entity_type set_type, ex_entity_id set_id, int64_t offset, int64_t count, const void_int *set_entry_list, const void_int *set_extra_list); extern int ex_get_set(int exoid, ex_entity_type set_type, ex_entity_id set_id, void_int *set_entry_list, void_int *set_extra_list); extern int ex_put_set_dist_fact(int exoid, ex_entity_type set_type, ex_entity_id set_id, const void *set_dist_fact); extern int ex_get_set_dist_fact(int exoid, ex_entity_type set_type, ex_entity_id set_id, void *set_dist_fact); extern int ex_get_partial_set_dist_fact (int exoid, ex_entity_type set_type, ex_entity_id set_id, int64_t offset, int64_t num_to_put, void *set_dist_fact); extern int ex_put_concat_sets(int exoid, ex_entity_type set_type, const struct ex_set_specs *set_specs); extern int ex_get_concat_sets(int exoid, ex_entity_type set_type, struct ex_set_specs *set_specs); extern int ex_put_sets(int exoid, size_t set_count, const struct ex_set *sets); extern int ex_get_sets(int exoid, size_t set_count, struct ex_set *sets); extern int ex_put_all_var_param_ext(int exoid, const ex_var_params *vp); extern int ex_put_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t num_entries_this_obj, const void *var_vals); extern int ex_put_n_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t start_index, int64_t num_entities, const void *var_vals); extern int ex_put_partial_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t start_index, int64_t num_entities, const void *var_vals); extern int ex_get_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t num_entry_this_obj, void *var_vals); extern int ex_get_n_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t start_index, int64_t num_entities, void *var_vals); extern int ex_get_n_elem_var (int exoid, int time_step, int elem_var_index, ex_entity_id elem_blk_id, int64_t num_elem_this_blk, int64_t start_elem_num, int64_t num_elem, void *elem_var_vals); extern int ex_get_partial_var(int exoid, int time_step, ex_entity_type var_type, int var_index, ex_entity_id obj_id, int64_t start_index, int64_t num_entities, void *var_vals); extern int ex_get_partial_elem_var (int exoid, int time_step, int elem_var_index, ex_entity_id elem_blk_id, int64_t num_elem_this_blk, int64_t start_elem_num, int64_t num_elem, void *elem_var_vals); extern int ex_get_var_time(int exoid, ex_entity_type var_type, int var_index, int64_t id, int beg_time_step, int end_time_step, void *var_vals); extern int ex_cvt_nodes_to_sides(int exoid, void_int *num_elem_per_set, void_int *num_nodes_per_set, void_int *side_sets_elem_index, void_int *side_sets_node_index, void_int *side_sets_elem_list, void_int *side_sets_node_list, void_int *side_sets_side_list); extern int ex_put_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t num_nodes, const void *nodal_var_vals); extern int ex_put_n_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t start_node, int64_t num_nodes, const void *nodal_var_vals); extern int ex_put_partial_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t start_node, int64_t num_nodes, const void *nodal_var_vals); extern int ex_get_partial_elem_map (int exoid, ex_entity_id map_id, int64_t ent_start, int64_t ent_count, void_int *elem_map); extern int ex_put_partial_elem_map (int exoid, ex_entity_id map_id, int64_t ent_start, int64_t ent_count, const void_int *elem_map); extern int ex_put_partial_num_map (int exoid, ex_entity_type map_type, ex_entity_id map_id, int64_t ent_start, int64_t ent_count, const void_int *map); extern int ex_put_partial_set_dist_fact (int exoid, ex_entity_type set_type, ex_entity_id set_id, int64_t offset, int64_t num_to_put, const void *set_dist_fact); extern int ex_get_concat_side_set_node_count(int exoid, int *side_set_node_cnt_list); extern int ex_get_side_set_node_list_len(int exoid, ex_entity_id side_set_id, void_int *side_set_node_list_len); extern int ex_get_side_set_node_count(int exoid, ex_entity_id side_set_id, int *side_set_node_cnt_list); extern int ex_get_side_set_node_list(int exoid, ex_entity_id side_set_id, void_int *side_set_node_cnt_list, void_int *side_set_node_list); extern int ex_get_init_info(int exoid, int *num_proc, int *num_proc_in_f, char *ftype ); extern int ex_put_init_info(int exoid, int num_proc, int num_proc_in_f, char *ftype ); extern int ex_get_init_global(int exoid, void_int *num_nodes_g, void_int *num_elems_g, void_int *num_elem_blks_g, void_int *num_node_sets_g, void_int *num_side_sets_g ); extern int ex_put_init_global(int exoid, int64_t num_nodes_g, int64_t num_elems_g, int64_t num_elem_blks_g, int64_t num_node_sets_g, int64_t num_side_sets_g ); extern int ex_get_loadbal_param(int exoid, void_int *num_int_nodes, void_int *num_bor_nodes, void_int *num_ext_nodes, void_int *num_int_elems, void_int *num_bor_elems, void_int *num_node_cmaps, void_int *num_elem_cmaps, int processor ); extern int ex_put_loadbal_param(int exoid, int64_t num_int_nodes, int64_t num_bor_nodes, int64_t num_ext_nodes, int64_t num_int_elems, int64_t num_bor_elems, int64_t num_node_cmaps, int64_t num_elem_cmaps, int processor ); extern int ex_put_loadbal_param_cc(int exoid, void_int *num_int_nodes, void_int *num_bor_nodes, void_int *num_ext_nodes, void_int *num_int_elems, void_int *num_bor_elems, void_int *num_node_cmaps, void_int *num_elem_cmaps ); extern int ex_get_ns_param_global(int exoid, void_int *ns_ids_glob, void_int *ns_n_cnt_glob, void_int *ns_df_cnt_glob ); extern int ex_put_ns_param_global(int exoid, void_int *global_ids, void_int *global_n_cnts, void_int *global_df_cnts ); extern int ex_get_ss_param_global(int exoid, void_int *ss_ids_glob, void_int *ss_s_cnt_glob, void_int *ss_df_cnt_glob ); extern int ex_put_ss_param_global(int exoid, void_int *global_ids, void_int *global_el_cnts, void_int *global_df_cnts ); extern int ex_get_eb_info_global(int exoid, void_int *el_blk_ids, void_int *el_blk_cnts ); extern int ex_put_eb_info_global(int exoid, void_int *el_blk_ids, void_int *el_blk_cnts ); extern int ex_get_n_side_set(int exoid, ex_entity_id side_set_id, int64_t start_side_num, int64_t num_sides, void_int *side_set_elem_list, void_int *side_set_side_list ); extern int ex_put_n_side_set(int exoid, ex_entity_id side_set_id, int64_t start_side_num, int64_t num_sides, const void_int *side_set_elem_list, const void_int *side_set_side_list ); extern int ex_get_n_side_set_df(int exoid, ex_entity_id side_set_id, int64_t start_num, int64_t num_df_to_get, void *side_set_df ); extern int ex_put_n_side_set_df(int exoid, ex_entity_id side_set_id, int64_t start_num, int64_t num_df_to_get, void *side_set_df ); extern int ex_get_n_node_set(int exoid, ex_entity_id node_set_id, int64_t start_node_num, int64_t num_node, void_int *node_set_node_list ); extern int ex_put_n_node_set(int exoid, ex_entity_id node_set_id, int64_t start_node_num, int64_t num_node, const void_int *node_set_node_list ); extern int ex_get_n_node_set_df(int exoid, ex_entity_id node_set_id, int64_t start_num, int64_t num_df_to_get, void *node_set_df ); extern int ex_put_n_node_set_df(int exoid, ex_entity_id node_set_id, int64_t start_num, int64_t num_df_to_get, void *node_set_df ); extern int ex_get_n_elem_conn (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void_int *connect ); extern int ex_put_n_elem_conn (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, const void_int *connect ); extern int ex_get_n_elem_attr (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void *attrib ); extern int ex_put_n_elem_attr (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void *attrib ); extern int ex_get_partial_side_set(int exoid, ex_entity_id side_set_id, int64_t start_side_num, int64_t num_sides, void_int *side_set_elem_list, void_int *side_set_side_list ); extern int ex_put_partial_side_set(int exoid, ex_entity_id side_set_id, int64_t start_side_num, int64_t num_sides, const void_int *side_set_elem_list, const void_int *side_set_side_list ); extern int ex_get_partial_side_set_df(int exoid, ex_entity_id side_set_id, int64_t start_num, int64_t num_df_to_get, void *side_set_df ); extern int ex_put_partial_side_set_df(int exoid, ex_entity_id side_set_id, int64_t start_num, int64_t num_df_to_get, void *side_set_df ); extern int ex_get_partial_node_set(int exoid, ex_entity_id node_set_id, int64_t start_node_num, int64_t num_node, void_int *node_set_node_list ); extern int ex_put_partial_node_set(int exoid, ex_entity_id node_set_id, int64_t start_node_num, int64_t num_node, const void_int *node_set_node_list ); extern int ex_get_partial_node_set_df(int exoid, ex_entity_id node_set_id, int64_t start_num, int64_t num_df_to_get, void *node_set_df ); extern int ex_put_partial_node_set_df(int exoid, ex_entity_id node_set_id, int64_t start_num, int64_t num_df_to_get, void *node_set_df ); extern int ex_get_partial_elem_conn (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void_int *connect ); extern int ex_put_partial_elem_conn (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, const void_int *connect ); extern int ex_get_partial_elem_attr (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void *attrib ); extern int ex_put_partial_elem_attr (int exoid, ex_entity_id elem_blk_id, int64_t start_elem_num, int64_t num_elems, void *attrib ); extern int ex_get_elem_type(int exoid, ex_entity_id elem_blk_id, char *elem_type ); extern int ex_put_elem_var_slab (int exoid, int time_step, int elem_var_index, ex_entity_id elem_blk_id, int64_t start_pos, int64_t num_vals, void *elem_var_vals ); extern int ex_put_nodal_var_slab(int exoid, int time_step, int nodal_var_index, int64_t start_pos, int64_t num_vals, void *nodal_var_vals ); extern int ex_get_n_elem_num_map (int exoid, int64_t start_ent, int64_t num_ents, void_int *elem_map ); extern int ex_get_n_node_num_map(int exoid, int64_t start_ent, int64_t num_ents, void_int *node_map ); extern int ex_get_partial_elem_num_map (int exoid, int64_t start_ent, int64_t num_ents, void_int *elem_map ); extern int ex_get_partial_node_num_map(int exoid, int64_t start_ent, int64_t num_ents, void_int *node_map ); extern int ex_get_processor_node_maps(int exoid, void_int *node_mapi, void_int *node_mapb, void_int *node_mape, int processor ); extern int ex_put_processor_node_maps(int exoid, void_int *node_mapi, void_int *node_mapb, void_int *node_mape, int processor ); extern int ex_get_processor_elem_maps(int exoid, void_int *elem_mapi, void_int *elem_mapb, int processor ); extern int ex_put_processor_elem_maps(int exoid, void_int *elem_mapi, void_int *elem_mapb, int processor ); extern int ex_get_cmap_params(int exoid, void_int *node_cmap_ids, void_int *node_cmap_node_cnts, void_int *elem_cmap_ids, void_int *elem_cmap_elem_cnts, int processor ); extern int ex_put_cmap_params(int exoid, void_int *node_map_ids, void_int *node_map_node_cnts, void_int *elem_map_ids, void_int *elem_map_elem_cnts, int64_t processor ); extern int ex_put_cmap_params_cc(int exoid, void_int *node_map_ids, void_int *node_map_node_cnts, void_int *node_proc_ptrs, void_int *elem_map_ids, void_int *elem_map_elem_cnts, void_int *elem_proc_ptrs ); extern int ex_get_node_cmap(int exoid, ex_entity_id map_id, void_int *node_ids, void_int *proc_ids, int processor ); extern int ex_put_node_cmap(int exoid, ex_entity_id map_id, void_int *node_ids, void_int *proc_ids, int processor ); extern int ex_get_elem_cmap(int exoid, ex_entity_id map_id, void_int *elem_ids, void_int *side_ids, void_int *proc_ids, int processor ); extern int ex_put_elem_cmap(int exoid, ex_entity_id map_id, void_int *elem_ids, void_int *side_ids, void_int *proc_ids, int processor ); extern int ex_get_nodal_var (int exoid, int time_step, int nodal_var_index, int64_t num_nodes, void *nodal_var_vals); extern int ex_get_nodal_var_time (int exoid, int nodal_var_index, int64_t node_number, int beg_time_step, int end_time_step, void *nodal_var_vals); extern int ex_get_concat_node_sets (int exoid, void_int *node_set_ids, void_int *num_nodes_per_set, void_int *num_df_per_set, void_int *node_sets_node_index, void_int *node_sets_df_index, void_int *node_sets_node_list, void *node_sets_dist_fact); extern int ex_get_concat_side_sets (int exoid, void_int *side_set_ids, void_int *num_elem_per_set, void_int *num_dist_per_set, void_int *side_sets_elem_index, void_int *side_sets_dist_index, void_int *side_sets_elem_list, void_int *side_sets_side_list, void *side_sets_dist_fact); extern int ex_get_elem_attr (int exoid, ex_entity_id elem_blk_id, void *attrib); extern int ex_get_elem_attr_names (int exoid, ex_entity_id elem_blk_id, char **names); extern int ex_get_elem_blk_ids (int exoid, void_int *ids); extern int ex_get_elem_block (int exoid, ex_entity_id elem_blk_id, char *elem_type, void_int *num_elem_this_blk, void_int *num_nodes_per_elem, void_int *num_attr); extern int ex_get_elem_conn (int exoid, ex_entity_id elem_blk_id, void_int *connect); extern int ex_get_elem_map (int exoid, ex_entity_id map_id, void_int *elem_map); extern int ex_get_elem_num_map (int exoid, void_int *elem_map); extern int ex_get_elem_var (int exoid, int time_step, int elem_var_index, ex_entity_id elem_blk_id, int64_t num_elem_this_blk, void *elem_var_vals); extern int ex_get_elem_var_tab (int exoid, int num_elem_blk, int num_elem_var, int *elem_var_tab); extern int ex_get_elem_var_time (int exoid, int elem_var_index, int64_t elem_number, int beg_time_step, int end_time_step, void *elem_var_vals); extern int ex_get_map (int exoid, void_int *elem_map); extern int ex_get_node_map (int exoid, ex_entity_id map_id, void_int *node_map); extern int ex_get_node_num_map (int exoid, void_int *node_map); extern int ex_get_node_set_param (int exoid, ex_entity_id node_set_id, void_int *num_nodes_in_set, void_int *num_df_in_set); extern int ex_get_node_set (int exoid, ex_entity_id node_set_id, void_int *node_set_node_list); extern int ex_get_node_set_dist_fact (int exoid, ex_entity_id node_set_id, void *node_set_dist_fact); extern int ex_get_node_set_ids (int exoid, void_int *ids); extern int ex_get_nset_var_tab (int exoid, int num_nodesets, int num_nset_var, int *nset_var_tab); extern int ex_get_nset_var (int exoid, int time_step, int nset_var_index, ex_entity_id nset_id, int64_t num_node_this_nset, void *nset_var_vals); extern int ex_get_one_elem_attr (int exoid, ex_entity_id elem_blk_id, int attrib_index, void *attrib); extern int ex_get_side_set (int exoid, ex_entity_id side_set_id, void_int *side_set_elem_list, void_int *side_set_side_list); extern int ex_get_side_set_dist_fact (int exoid, ex_entity_id side_set_id, void *side_set_dist_fact); extern int ex_get_side_set_ids (int exoid, void_int *ids); extern int ex_get_side_set_param (int exoid, ex_entity_id side_set_id, void_int *num_side_in_set, void_int *num_dist_fact_in_set); extern int ex_get_sset_var (int exoid, int time_step, int sset_var_index, ex_entity_id sset_id, int64_t num_side_this_sset, void *sset_var_vals); extern int ex_get_sset_var_tab (int exoid, int num_sidesets, int num_sset_var, int *sset_var_tab); extern int ex_get_var_names (int exoid, const char *var_type, int num_vars, char *var_names[]); extern int ex_get_var_name (int exoid, const char *var_type, int var_num, char *var_name); extern int ex_get_var_param (int exoid, const char *var_type, int *num_vars); extern int ex_get_var_tab (int exoid, const char *var_type, int num_blk, int num_var, int *var_tab); extern int ex_put_concat_node_sets (int exoid, void_int *node_set_ids, void_int *num_nodes_per_set, void_int *num_dist_per_set, void_int *node_sets_node_index, void_int *node_sets_df_index, void_int *node_sets_node_list, void *node_sets_dist_fact); extern int ex_put_concat_side_sets (int exoid, void_int *side_set_ids, void_int *num_elem_per_set, void_int *num_dist_per_set, void_int *side_sets_elem_index, void_int *side_sets_dist_index, void_int *side_sets_elem_list, void_int *side_sets_side_list, void *side_sets_dist_fact); extern int ex_put_concat_var_param (int exoid, int num_g, int num_n, int num_e, int num_elem_blk, int *elem_var_tab); extern int ex_put_elem_attr_names(int exoid, ex_entity_id elem_blk_id, char *names[]); extern int ex_put_elem_attr (int exoid, ex_entity_id elem_blk_id, const void *attrib); extern int ex_put_elem_block (int exoid, ex_entity_id elem_blk_id, const char *elem_type, int64_t num_elem_this_blk, int64_t num_nodes_per_elem, int64_t num_attr); extern int ex_put_elem_conn (int exoid, ex_entity_id elem_blk_id, const void_int *connect); extern int ex_put_elem_map (int exoid, ex_entity_id map_id, const void_int *elem_map); extern int ex_put_elem_num_map (int exoid, const void_int *elem_map); extern int ex_put_elem_var (int exoid, int time_step, int elem_var_index, ex_entity_id elem_blk_id, int64_t num_elem_this_blk, const void *elem_var_vals); extern int ex_put_elem_var_tab (int exoid, int num_elem_blk, int num_elem_var, int *elem_var_tab); extern int ex_put_glob_vars (int exoid, int time_step, int num_glob_vars, const void *glob_var_vals); extern int ex_put_map (int exoid, const void_int *elem_map); extern int ex_put_node_map (int exoid, ex_entity_id map_id, const void_int *node_map); extern int ex_put_node_num_map (int exoid, const void_int *node_map); extern int ex_put_node_set (int exoid, ex_entity_id node_set_id, const void_int *node_set_node_list); extern int ex_put_node_set_dist_fact (int exoid, ex_entity_id node_set_id, const void *node_set_dist_fact); extern int ex_put_node_set_param (int exoid, ex_entity_id node_set_id, int64_t num_nodes_in_set, int64_t num_dist_in_set); extern int ex_put_nset_var (int exoid, int time_step, int nset_var_index, ex_entity_id nset_id, int64_t num_nodes_this_nset, const void *nset_var_vals); extern int ex_put_nset_var_tab (int exoid, int num_nset, int num_nset_var, int *nset_var_tab); extern int ex_put_one_elem_attr (int exoid, ex_entity_id elem_blk_id, int attrib_index, const void *attrib); extern int ex_put_side_set (int exoid, ex_entity_id side_set_id, const void_int *side_set_elem_list, const void_int *side_set_side_list); extern int ex_put_side_set_dist_fact (int exoid, ex_entity_id side_set_id, const void *side_set_dist_fact); extern int ex_put_side_set_param (int exoid, ex_entity_id side_set_id, int64_t num_side_in_set, int64_t num_dist_fact_in_set); extern int ex_put_sset_var (int exoid, int time_step, int sset_var_index, ex_entity_id sset_id, int64_t num_faces_this_sset, const void *sset_var_vals); extern int ex_put_sset_var_tab (int exoid, int num_sset, int num_sset_var, int *sset_var_tab); extern int ex_put_var_name (int exoid, const char *var_type, int var_num, const char *var_name); extern int ex_put_var_names (int exoid, const char *var_type, int num_vars, char *var_names[]); extern int ex_put_var_param (int exoid, const char *var_type, int num_vars); extern int ex_put_var_tab (int exoid, const char *var_type, int num_blk, int num_var, int *var_tab); extern int exerrval; extern int exoptval; char* ex_name_of_object(ex_entity_type obj_type); ex_entity_type ex_var_type_to_ex_entity_type(char var_type); int ex_get_idx(int neid, const char *ne_var_name, int64_t *index, int pos ); } # 1980 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/exodusII.h" # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['exodusII.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.exodusii(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.exodusii(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.MOAB(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.MOAB(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chaco(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Chaco(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureScalarType from PETSc.options.scalarTypes(/glade/p/work/fandek/petsc/config/PETSc/options/scalarTypes.py:37) TESTING: configureScalarType from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:37) Choose between real and complex numbers Defined "USE_SCALAR_REAL" to "1" Scalar type is real Pushing language Cxx All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnormal(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_ISNORMAL" to "1" Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isnan(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_ISNAN" to "1" Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0; int a = isinf(b); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_ISINF" to "1" Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc(6): error: identifier "_isnan" is undefined double b = 2.0;int a = _isnan(b); ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _isnan(b); ; return 0; } Compile failed inside link Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc(6): error: identifier "_finite" is undefined double b = 2.0;int a = _finite(b); ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes/conftest.cc (code 2) Source: #include "confdefs.h" #include "conffix.h" #include int main() { double b = 2.0;int a = _finite(b); ; return 0; } Compile failed inside link Popping language Cxx ================================================================================ TEST configurePrecision from PETSc.options.scalarTypes(/glade/p/work/fandek/petsc/config/PETSc/options/scalarTypes.py:77) TESTING: configurePrecision from PETSc.options.scalarTypes(config/PETSc/options/scalarTypes.py:77) Set the default real number precision for PETSc objects Defined "USE_REAL_DOUBLE" to "1" Defined make macro "PETSC_SCALAR_SIZE" to "64" Precision is double ================================================================================ TEST alternateConfigureLibrary from config.packages.opencl(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.opencl(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.viennacl(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.viennacl(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cuda(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.cuda(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.cusp(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.cusp(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST locateCMake from config.packages.cmake(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/cmake.py:32) TESTING: locateCMake from config.packages.cmake(config/BuildSystem/config/packages/cmake.py:32) Looking for default CMake executable Checking for program /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake...found Defined make macro "CMAKE" to "/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake" Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.metis(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.metis(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional metis Looking for METIS in directory starting with metis Could not locate an existing copy of metis: ['sowing', 'exodus-5.24'] Downloading metis =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/metis-5.1.0-p1.tar.gz for METIS =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/metis-5.1.0-p1.tar.gz to /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_metis-5.1.0-p1.tar.gz Extracting /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_metis-5.1.0-p1.tar.gz Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages; chmod -R a+r metis-5.1.0-p1;find metis-5.1.0-p1 -type d -name "*" -exec chmod a+rx {} \; Looking for METIS in directory starting with metis Found a copy of METIS in metis-5.1.0-p1 Looking for METIS in directory starting with metis Found a copy of METIS in metis-5.1.0-p1 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Have to rebuild metis, /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/metis.petscconf != /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/metis =============================================================================== Configuring METIS with cmake, this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/glade/p/work/fandek/petsc/arch-linux2-cxx-debug -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -wd1572 -g" -DCMAKE_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-wd1572 -g -fPIC" -DCMAKE_Fortran_COMPILER="mpif90" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -g" -DGKLIB_PATH=../GKlib -DSHARED=1 -DDEBUG=1 -DMETIS_USE_LONGINDEX=1 -DMETIS_USE_DOUBLEPRECISION=1 stdout: -- The C compiler identification is Intel 12.1.0.20120612 -- The CXX compiler identification is Intel 12.1.0.20120612 -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Success -- checking for __thread thread-local storage - found -- Configuring done -- Generating done -- Build files have been written to: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build =============================================================================== Compiling and installing METIS; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /usr/bin/gmake -j 24 && /usr/bin/gmake install stdout: /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 2 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/glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 14 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 15 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 16 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 17 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 18 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 19 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 20 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 21 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 22 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 23 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 24 [ 1%] [ 3%] [ 4%] [ 8%] [ 8%] [ 9%] [ 11%] [ 14%] [ 13%] [ 16%] [ 19%] [ 19%] [ 21%] [ 22%] [ 24%] [ 26%] [ 27%] [ 29%] [ 31%] [ 32%] [ 34%] [ 36%] [ 37%] [ 39%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/b64.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/b64.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/evaluate.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/rw.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/rw.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/rw.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/csr.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/sort.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/sort.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/sort.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/fs.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pdb.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/pdb.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/gkregex.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/gkregex.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/htable.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/htable.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/htable.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/error.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/itemsets.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/itemsets.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/random.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/memory.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/memory.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/memory.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/string.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/string.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/string.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/graph.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pqueue.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/pqueue.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/timers.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/getopt.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/timers.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/timers.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/getopt.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/getopt.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/mcore.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/omp.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/seq.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 25 [ 40%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/tokenizer.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 26 [ 42%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 27 [ 44%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/auxapi.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/auxapi.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 28 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 29 [ 45%] [ 47%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/balance.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/balance.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/bucketsort.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/bucketsort.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 30 [ 49%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/checkgraph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/checkgraph.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 31 [ 50%] Building C object libmetis/CMakeFiles/metis.dir/coarsen.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/coarsen.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/coarsen.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 32 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 33 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 34 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 35 [ 52%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 36 [ 54%] [ 55%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 37 [ 57%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 38 Building C object libmetis/CMakeFiles/metis.dir/compress.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/compress.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/compress.c [ 59%] Building C object libmetis/CMakeFiles/metis.dir/debug.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/debug.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/debug.c Building C object libmetis/CMakeFiles/metis.dir/contig.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/contig.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/contig.c [ 60%] [ 62%] Building C object libmetis/CMakeFiles/metis.dir/fortran.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/fortran.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/fortran.c Building C object libmetis/CMakeFiles/metis.dir/fm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/fm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/fm.c Building C object libmetis/CMakeFiles/metis.dir/frename.c.o /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 39 [ 63%] cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/frename.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/frename.c Building C object libmetis/CMakeFiles/metis.dir/gklib.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/gklib.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/gklib.c Building C object libmetis/CMakeFiles/metis.dir/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/graph.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 40 [ 65%] Building C object libmetis/CMakeFiles/metis.dir/initpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/initpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 41 [ 67%] Building C object libmetis/CMakeFiles/metis.dir/kmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 42 [ 68%] Building C object libmetis/CMakeFiles/metis.dir/kwayfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kwayfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kwayfm.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 43 [ 70%] Building C object libmetis/CMakeFiles/metis.dir/kwayrefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kwayrefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kwayrefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 44 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 45 [ 72%] [ 73%] Building C object libmetis/CMakeFiles/metis.dir/mcutil.c.o Building C object libmetis/CMakeFiles/metis.dir/mesh.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mesh.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mesh.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mcutil.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mcutil.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 46 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 47 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 48 [ 75%] [ 77%] [ 78%] Building C object libmetis/CMakeFiles/metis.dir/meshpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/meshpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/meshpart.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 49 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 50 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 51 Building C object libmetis/CMakeFiles/metis.dir/minconn.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/minconn.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/minconn.c Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mincover.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mincover.c [ 81%] [ 81%] [ 83%] Building C object libmetis/CMakeFiles/metis.dir/ometis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/ometis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/ometis.c Building C object libmetis/CMakeFiles/metis.dir/mmd.c.o Building C object libmetis/CMakeFiles/metis.dir/options.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mmd.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mmd.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/options.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 52 [ 85%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 53 Building C object libmetis/CMakeFiles/metis.dir/parmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/parmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/parmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 54 [ 86%] [ 88%] Building C object libmetis/CMakeFiles/metis.dir/pmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/pmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/pmetis.c Building C object libmetis/CMakeFiles/metis.dir/refine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/refine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/refine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 55 [ 90%] Building C object libmetis/CMakeFiles/metis.dir/separator.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/separator.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/separator.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 56 [ 91%] Building C object libmetis/CMakeFiles/metis.dir/sfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/sfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/sfm.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 57 [ 93%] Building C object libmetis/CMakeFiles/metis.dir/srefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/srefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/srefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 58 [ 95%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 59 [ 96%] Building C object libmetis/CMakeFiles/metis.dir/stat.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/stat.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/stat.c Building C object libmetis/CMakeFiles/metis.dir/timing.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/timing.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/timing.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 60 [ 98%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 61 [100%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/wspace.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/wspace.c Linking C shared library libmetis.so cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -fPIC -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -shared -Wl,-soname,libmetis.so -o libmetis.so CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o CMakeFiles/metis.dir/__/GKlib/memory.c.o CMakeFiles/metis.dir/__/GKlib/omp.c.o CMakeFiles/metis.dir/__/GKlib/pdb.c.o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o CMakeFiles/metis.dir/__/GKlib/random.c.o CMakeFiles/metis.dir/__/GKlib/rw.c.o CMakeFiles/metis.dir/__/GKlib/seq.c.o CMakeFiles/metis.dir/__/GKlib/sort.c.o CMakeFiles/metis.dir/__/GKlib/string.c.o CMakeFiles/metis.dir/__/GKlib/timers.c.o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o CMakeFiles/metis.dir/__/GKlib/util.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o -lm gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 [100%] Built target metis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start 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`/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering 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preinstall gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' Install the project... /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_tls.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libmetis.so -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_defs.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_rename.h ********Output of running make on metis follows ******* -- The C compiler identification is Intel 12.1.0.20120612 -- The CXX compiler identification is Intel 12.1.0.20120612 -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Looking for execinfo.h -- Looking for execinfo.h - found -- Looking for getline -- Looking for getline - found -- Performing Test HAVE__thread -- Performing Test HAVE__thread - Success -- checking for __thread thread-local storage - found -- Configuring done -- Generating done -- Build files have been written to: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/buildCMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= Scanning dependencies of target metis gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory 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/glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 17 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 18 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 19 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 20 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 21 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 22 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 23 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 24 [ 1%] [ 3%] [ 4%] [ 8%] [ 8%] [ 9%] [ 11%] [ 14%] [ 13%] [ 16%] [ 19%] [ 19%] [ 21%] [ 22%] [ 24%] [ 26%] [ 27%] [ 29%] [ 31%] [ 32%] [ 34%] [ 36%] [ 37%] [ 39%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/b64.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/b64.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/b64.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/evaluate.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/evaluate.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/fkvkselect.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/io.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/io.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/io.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/blas.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/blas.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/blas.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/rw.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/rw.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/rw.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/csr.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/csr.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/sort.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/sort.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/sort.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/fs.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/fs.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/fs.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pdb.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pdb.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/pdb.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/gkregex.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/gkregex.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/htable.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/htable.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/htable.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/error.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/error.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/error.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/itemsets.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/itemsets.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/random.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/random.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/random.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/memory.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/memory.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/memory.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/string.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/string.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/string.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/graph.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/pqueue.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/pqueue.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/timers.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/getopt.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/mcore.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/timers.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/timers.c Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/omp.c.o Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/seq.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/getopt.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/getopt.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/mcore.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/mcore.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/omp.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/omp.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/seq.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/seq.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 25 [ 40%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/tokenizer.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 26 [ 42%] Building C object libmetis/CMakeFiles/metis.dir/__/GKlib/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/__/GKlib/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 27 [ 44%] Building C object libmetis/CMakeFiles/metis.dir/auxapi.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/auxapi.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/auxapi.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 28 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 29 [ 45%] [ 47%] Building C object libmetis/CMakeFiles/metis.dir/balance.c.o Building C object libmetis/CMakeFiles/metis.dir/bucketsort.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/balance.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/balance.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/bucketsort.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/bucketsort.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 30 [ 49%] Building C object libmetis/CMakeFiles/metis.dir/checkgraph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/checkgraph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/checkgraph.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 31 [ 50%] Building C object libmetis/CMakeFiles/metis.dir/coarsen.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/coarsen.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/coarsen.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 32 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 33 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 34 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 35 [ 52%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 36 [ 54%] [ 55%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 37 [ 57%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 38 Building C object libmetis/CMakeFiles/metis.dir/compress.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/compress.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/compress.c [ 59%] Building C object libmetis/CMakeFiles/metis.dir/debug.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/debug.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/debug.c Building C object libmetis/CMakeFiles/metis.dir/contig.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/contig.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/contig.c [ 60%] [ 62%] Building C object libmetis/CMakeFiles/metis.dir/fortran.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/fortran.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/fortran.c Building C object libmetis/CMakeFiles/metis.dir/fm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/fm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/fm.c Building C object libmetis/CMakeFiles/metis.dir/frename.c.o /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 39 [ 63%] cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/frename.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/frename.c Building C object libmetis/CMakeFiles/metis.dir/gklib.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/gklib.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/gklib.c Building C object libmetis/CMakeFiles/metis.dir/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/graph.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 40 [ 65%] Building C object libmetis/CMakeFiles/metis.dir/initpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/initpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 41 [ 67%] Building C object libmetis/CMakeFiles/metis.dir/kmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 42 [ 68%] Building C object libmetis/CMakeFiles/metis.dir/kwayfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kwayfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kwayfm.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 43 [ 70%] Building C object libmetis/CMakeFiles/metis.dir/kwayrefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/kwayrefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/kwayrefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 44 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 45 [ 72%] [ 73%] Building C object libmetis/CMakeFiles/metis.dir/mcutil.c.o Building C object libmetis/CMakeFiles/metis.dir/mesh.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mesh.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mesh.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mcutil.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mcutil.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 46 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 47 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 48 [ 75%] [ 77%] [ 78%] Building C object libmetis/CMakeFiles/metis.dir/meshpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/meshpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/meshpart.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 49 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 50 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 51 Building C object libmetis/CMakeFiles/metis.dir/minconn.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/minconn.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/minconn.c Building C object libmetis/CMakeFiles/metis.dir/mincover.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mincover.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mincover.c [ 81%] [ 81%] [ 83%] Building C object libmetis/CMakeFiles/metis.dir/ometis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/ometis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/ometis.c Building C object libmetis/CMakeFiles/metis.dir/mmd.c.o Building C object libmetis/CMakeFiles/metis.dir/options.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/mmd.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/mmd.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/options.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 52 [ 85%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 53 Building C object libmetis/CMakeFiles/metis.dir/parmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/parmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/parmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 54 [ 86%] [ 88%] Building C object libmetis/CMakeFiles/metis.dir/pmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/pmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/pmetis.c Building C object libmetis/CMakeFiles/metis.dir/refine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/refine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/refine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 55 [ 90%] Building C object libmetis/CMakeFiles/metis.dir/separator.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/separator.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/separator.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 56 [ 91%] Building C object libmetis/CMakeFiles/metis.dir/sfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/sfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/sfm.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 57 [ 93%] Building C object libmetis/CMakeFiles/metis.dir/srefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/srefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/srefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 58 [ 95%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 59 [ 96%] Building C object libmetis/CMakeFiles/metis.dir/stat.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/stat.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/stat.c Building C object libmetis/CMakeFiles/metis.dir/timing.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/timing.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/timing.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 60 [ 98%] Building C object libmetis/CMakeFiles/metis.dir/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 61 [100%] Building C object libmetis/CMakeFiles/metis.dir/wspace.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dmetis_EXPORTS -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/. -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/include -o CMakeFiles/metis.dir/wspace.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/wspace.c Linking C shared library libmetis.so cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_link_script CMakeFiles/metis.dir/link.txt --verbose=1 /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -fPIC -fPIC -wd1572 -g -DLINUX -D_FILE_OFFSET_BITS=64 -DDEBUG -DNDEBUG -DNDEBUG2 -DHAVE_EXECINFO_H -DHAVE_GETLINE -g -shared -Wl,-soname,libmetis.so -o libmetis.so CMakeFiles/metis.dir/__/GKlib/b64.c.o CMakeFiles/metis.dir/__/GKlib/blas.c.o CMakeFiles/metis.dir/__/GKlib/csr.c.o CMakeFiles/metis.dir/__/GKlib/error.c.o CMakeFiles/metis.dir/__/GKlib/evaluate.c.o CMakeFiles/metis.dir/__/GKlib/fkvkselect.c.o CMakeFiles/metis.dir/__/GKlib/fs.c.o CMakeFiles/metis.dir/__/GKlib/getopt.c.o CMakeFiles/metis.dir/__/GKlib/gkregex.c.o CMakeFiles/metis.dir/__/GKlib/graph.c.o CMakeFiles/metis.dir/__/GKlib/htable.c.o CMakeFiles/metis.dir/__/GKlib/io.c.o CMakeFiles/metis.dir/__/GKlib/itemsets.c.o CMakeFiles/metis.dir/__/GKlib/mcore.c.o CMakeFiles/metis.dir/__/GKlib/memory.c.o CMakeFiles/metis.dir/__/GKlib/omp.c.o CMakeFiles/metis.dir/__/GKlib/pdb.c.o CMakeFiles/metis.dir/__/GKlib/pqueue.c.o CMakeFiles/metis.dir/__/GKlib/random.c.o CMakeFiles/metis.dir/__/GKlib/rw.c.o CMakeFiles/metis.dir/__/GKlib/seq.c.o CMakeFiles/metis.dir/__/GKlib/sort.c.o CMakeFiles/metis.dir/__/GKlib/string.c.o CMakeFiles/metis.dir/__/GKlib/timers.c.o CMakeFiles/metis.dir/__/GKlib/tokenizer.c.o CMakeFiles/metis.dir/__/GKlib/util.c.o CMakeFiles/metis.dir/auxapi.c.o CMakeFiles/metis.dir/balance.c.o CMakeFiles/metis.dir/bucketsort.c.o CMakeFiles/metis.dir/checkgraph.c.o CMakeFiles/metis.dir/coarsen.c.o CMakeFiles/metis.dir/compress.c.o CMakeFiles/metis.dir/contig.c.o CMakeFiles/metis.dir/debug.c.o CMakeFiles/metis.dir/fm.c.o CMakeFiles/metis.dir/fortran.c.o CMakeFiles/metis.dir/frename.c.o CMakeFiles/metis.dir/gklib.c.o CMakeFiles/metis.dir/graph.c.o CMakeFiles/metis.dir/initpart.c.o CMakeFiles/metis.dir/kmetis.c.o CMakeFiles/metis.dir/kwayfm.c.o CMakeFiles/metis.dir/kwayrefine.c.o CMakeFiles/metis.dir/mcutil.c.o CMakeFiles/metis.dir/mesh.c.o CMakeFiles/metis.dir/meshpart.c.o CMakeFiles/metis.dir/minconn.c.o CMakeFiles/metis.dir/mincover.c.o CMakeFiles/metis.dir/mmd.c.o CMakeFiles/metis.dir/ometis.c.o CMakeFiles/metis.dir/options.c.o CMakeFiles/metis.dir/parmetis.c.o CMakeFiles/metis.dir/pmetis.c.o CMakeFiles/metis.dir/refine.c.o CMakeFiles/metis.dir/separator.c.o CMakeFiles/metis.dir/sfm.c.o CMakeFiles/metis.dir/srefine.c.o CMakeFiles/metis.dir/stat.c.o CMakeFiles/metis.dir/timing.c.o CMakeFiles/metis.dir/util.c.o CMakeFiles/metis.dir/wspace.c.o -lm gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 [100%] Built target metis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/libmetis/CMakeFiles/metis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /usr/bin/gmake -f libmetis/CMakeFiles/metis.dir/build.make libmetis/CMakeFiles/metis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' gmake[2]: Nothing to be done for `libmetis/CMakeFiles/metis.dir/build'. gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 [100%] Built target metis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/build' Install the project... /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_tls.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libmetis.so -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_defs.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/gklib_rename.h/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(796): warning #161: unrecognized #pragma #pragma omp parallel private(i, j, ncand, rsum, tsum, cand) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(800): warning #161: unrecognized #pragma #pragma omp for schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(839): warning #161: unrecognized #pragma #pragma omp parallel private(i, j, ncand, rsum, tsum, cand) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(843): warning #161: unrecognized #pragma #pragma omp for schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1179): warning #161: unrecognized #pragma #pragma omp parallel if (n > 100) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1185): warning #161: unrecognized #pragma #pragma omp single ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1192): warning #161: unrecognized #pragma #pragma omp for schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1331): warning #161: unrecognized #pragma #pragma omp parallel if (ptr[n] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1333): warning #161: unrecognized #pragma #pragma omp for private(j,sum) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1359): warning #161: unrecognized #pragma #pragma omp parallel if (ptr[n] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1361): warning #161: unrecognized #pragma #pragma omp for private(j,sum) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1404): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1406): warning #161: unrecognized #pragma #pragma omp for private(j, maxtf) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1419): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1421): warning #161: unrecognized #pragma #pragma omp for private(j, maxtf) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1434): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1436): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1447): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1449): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1460): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1462): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1473): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1475): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1486): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1488): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1499): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1502): warning #161: unrecognized #pragma #pragma omp for schedule(static,32) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1530): warning #161: unrecognized #pragma #pragma omp parallel if (ncols > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1532): warning #161: unrecognized #pragma #pragma omp for schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1537): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1539): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1560): warning #161: unrecognized #pragma #pragma omp parallel if (ncols > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1562): warning #161: unrecognized #pragma #pragma omp for schedule(static) reduction(+:nnzcols) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1569): warning #161: unrecognized #pragma #pragma omp for schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1574): warning #161: unrecognized #pragma #pragma omp parallel if (rowptr[nrows] > OMPMINOPS) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1576): warning #161: unrecognized #pragma #pragma omp for private(j) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1633): warning #161: unrecognized #pragma #pragma omp parallel for if (ptr[n] > OMPMINOPS) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/GKlib/csr.c(1677): warning #161: unrecognized #pragma #pragma omp parallel for if (ptr[n] > OMPMINOPS) schedule(static) ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c(27): warning #188: enumerated type mixed with another type IFSET(ctrl->dbglvl, METIS_DBG_REFINE, ctrl->dbglvl -= METIS_DBG_REFINE); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c(28): warning #188: enumerated type mixed with another type IFSET(ctrl->dbglvl, METIS_DBG_MOVEINFO, ctrl->dbglvl -= METIS_DBG_MOVEINFO); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c(73): warning #188: enumerated type mixed with another type IFSET(ctrl->dbglvl, METIS_DBG_REFINE, ctrl->dbglvl -= METIS_DBG_REFINE); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/initpart.c(74): warning #188: enumerated type mixed with another type IFSET(ctrl->dbglvl, METIS_DBG_MOVEINFO, ctrl->dbglvl -= METIS_DBG_MOVEINFO); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(29): warning #188: enumerated type mixed with another type ctrl->objtype = GETOPTION(options, METIS_OPTION_OBJTYPE, METIS_OBJTYPE_CUT); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(35): warning #188: enumerated type mixed with another type ctrl->iptype = GETOPTION(options, METIS_OPTION_IPTYPE, METIS_IPTYPE_GROW); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(40): warning #188: enumerated type mixed with another type ctrl->iptype = GETOPTION(options, METIS_OPTION_IPTYPE, METIS_IPTYPE_RANDOM); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(49): warning #188: enumerated type mixed with another type ctrl->objtype = GETOPTION(options, METIS_OPTION_OBJTYPE, METIS_OBJTYPE_CUT); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(61): warning #188: enumerated type mixed with another type ctrl->objtype = GETOPTION(options, METIS_OPTION_OBJTYPE, METIS_OBJTYPE_NODE); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(62): warning #188: enumerated type mixed with another type ctrl->rtype = GETOPTION(options, METIS_OPTION_RTYPE, METIS_RTYPE_SEP1SIDED); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(63): warning #188: enumerated type mixed with another type ctrl->iptype = GETOPTION(options, METIS_OPTION_IPTYPE, METIS_IPTYPE_EDGE); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(79): warning #188: enumerated type mixed with another type ctrl->ctype = GETOPTION(options, METIS_OPTION_CTYPE, METIS_CTYPE_SHEM); ^ /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/libmetis/options.c(82): warning #188: enumerated type mixed with another type ctrl->dbglvl = GETOPTION(options, METIS_OPTION_DBGLVL, 0); ^ ********End of Output of running make on metis ******* Executing: cp -f /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1/metis.petscconf /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/metis Checking for library in Download METIS: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libmetis.a'] Contents: ['include', 'lib', 'bin', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [METIS_PartGraphKway] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libmetis.a'] [] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char METIS_PartGraphKway(); static void _check_METIS_PartGraphKway() { METIS_PartGraphKway(); } #ifdef __cplusplus } #endif int main() { _check_METIS_PartGraphKway();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBMETIS" to "1" Popping language Cxx Checking for headers Download METIS: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['metis.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" 1 # 76 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" # 1 "/usr/include/inttypes.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 27 "/usr/include/inttypes.h" 2 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 283 "/usr/include/stdint.h" 3 # 319 "/usr/include/stdint.h" 3 # 29 "/usr/include/inttypes.h" 2 3 # 43 "/usr/include/inttypes.h" 3 # 272 "/usr/include/inttypes.h" 3 extern "C" { typedef struct { long int quot; long int rem; } imaxdiv_t; # 295 "/usr/include/inttypes.h" 3 extern intmax_t imaxabs (intmax_t __n) throw () __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) throw () __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw (); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) throw (); extern intmax_t wcstoimax (__const wchar_t *__restrict __nptr, wchar_t **__restrict __endptr, int __base) throw (); extern uintmax_t wcstoumax (__const wchar_t *__restrict __nptr, wchar_t ** __restrict __endptr, int __base) throw (); # 441 "/usr/include/inttypes.h" 3 } # 95 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" 2 # 114 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" typedef int64_t idx_t; # 131 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" # 151 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" typedef double real_t; # 192 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" extern "C" { int METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *vsize, idx_t *adjwgt, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part); int METIS_PartGraphKway(idx_t *nvtxs, idx_t *ncon, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *vsize, idx_t *adjwgt, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part); int METIS_MeshToDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *ncommon, idx_t *numflag, idx_t **r_xadj, idx_t **r_adjncy); int METIS_MeshToNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *numflag, idx_t **r_xadj, idx_t **r_adjncy); int METIS_PartMeshNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *vwgt, idx_t *vsize, idx_t *nparts, real_t *tpwgts, idx_t *options, idx_t *objval, idx_t *epart, idx_t *npart); int METIS_PartMeshDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *vwgt, idx_t *vsize, idx_t *ncommon, idx_t *nparts, real_t *tpwgts, idx_t *options, idx_t *objval, idx_t *epart, idx_t *npart); int METIS_NodeND(idx_t *nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *options, idx_t *perm, idx_t *iperm); int METIS_Free(void *ptr); int METIS_SetDefaultOptions(idx_t *options); int METIS_NodeNDP(idx_t nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t npes, idx_t *options, idx_t *perm, idx_t *iperm, idx_t *sizes); int METIS_ComputeVertexSeparator(idx_t *nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *options, idx_t *sepsize, idx_t *part); int METIS_NodeRefine(idx_t nvtxs, idx_t *xadj, idx_t *vwgt, idx_t *adjncy, idx_t *where, idx_t *hmarker, real_t ubfactor); } typedef enum { METIS_OK = 1, METIS_ERROR_INPUT = -2, METIS_ERROR_MEMORY = -3, METIS_ERROR = -4 } rstatus_et; typedef enum { METIS_OP_PMETIS, METIS_OP_KMETIS, METIS_OP_OMETIS } moptype_et; typedef enum { METIS_OPTION_PTYPE, METIS_OPTION_OBJTYPE, METIS_OPTION_CTYPE, METIS_OPTION_IPTYPE, METIS_OPTION_RTYPE, METIS_OPTION_DBGLVL, METIS_OPTION_NITER, METIS_OPTION_NCUTS, METIS_OPTION_SEED, METIS_OPTION_NO2HOP, METIS_OPTION_MINCONN, METIS_OPTION_CONTIG, METIS_OPTION_COMPRESS, METIS_OPTION_CCORDER, METIS_OPTION_PFACTOR, METIS_OPTION_NSEPS, METIS_OPTION_UFACTOR, METIS_OPTION_NUMBERING, METIS_OPTION_HELP, METIS_OPTION_TPWGTS, METIS_OPTION_NCOMMON, METIS_OPTION_NOOUTPUT, METIS_OPTION_BALANCE, METIS_OPTION_GTYPE, METIS_OPTION_UBVEC } moptions_et; typedef enum { METIS_PTYPE_RB, METIS_PTYPE_KWAY } mptype_et; typedef enum { METIS_GTYPE_DUAL, METIS_GTYPE_NODAL } mgtype_et; typedef enum { METIS_CTYPE_RM, METIS_CTYPE_SHEM } mctype_et; typedef enum { METIS_IPTYPE_GROW, METIS_IPTYPE_RANDOM, METIS_IPTYPE_EDGE, METIS_IPTYPE_NODE, METIS_IPTYPE_METISRB } miptype_et; typedef enum { METIS_RTYPE_FM, METIS_RTYPE_GREEDY, METIS_RTYPE_SEP2SIDED, METIS_RTYPE_SEP1SIDED } mrtype_et; typedef enum { METIS_DBG_INFO = 1, METIS_DBG_TIME = 2, METIS_DBG_COARSEN = 4, METIS_DBG_REFINE = 8, METIS_DBG_IPART = 16, METIS_DBG_MOVEINFO = 32, METIS_DBG_SEPINFO = 64, METIS_DBG_CONNINFO = 128, METIS_DBG_CONTIGINFO = 256, METIS_DBG_MEMORY = 2048, } mdbglvl_et; typedef enum { METIS_OBJTYPE_CUT, METIS_OBJTYPE_VOL, METIS_OBJTYPE_NODE } mobjtype_et; # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['metis.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.metis(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.metis(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.parmetis(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional parmetis Looking for PARMETIS in directory starting with parmetis Could not locate an existing copy of parmetis: ['sowing', 'exodus-5.24', 'metis-5.1.0-p1'] Downloading parmetis =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/parmetis-4.0.3-p2.tar.gz for PARMETIS =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/parmetis-4.0.3-p2.tar.gz to /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_parmetis-4.0.3-p2.tar.gz Extracting /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_parmetis-4.0.3-p2.tar.gz Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages; chmod -R a+r parmetis-4.0.3-p2;find parmetis-4.0.3-p2 -type d -name "*" -exec chmod a+rx {} \; Looking for PARMETIS in directory starting with parmetis Found a copy of PARMETIS in parmetis-4.0.3-p2 Looking for PARMETIS in directory starting with parmetis Found a copy of PARMETIS in parmetis-4.0.3-p2 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Have to rebuild parmetis, /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/parmetis.petscconf != /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/parmetis =============================================================================== Configuring PARMETIS with cmake, this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake .. -DCMAKE_INSTALL_PREFIX=/glade/p/work/fandek/petsc/arch-linux2-cxx-debug -DCMAKE_VERBOSE_MAKEFILE=1 -DCMAKE_C_COMPILER="mpicc" -DCMAKE_AR=/usr/bin/ar -DCMAKE_RANLIB=/usr/bin/ranlib -DCMAKE_C_FLAGS:STRING="-fPIC -wd1572 -g" -DCMAKE_CXX_COMPILER="mpicxx" -DCMAKE_CXX_FLAGS:STRING="-wd1572 -g -fPIC" -DCMAKE_Fortran_COMPILER="mpif90" -DCMAKE_Fortran_FLAGS:STRING="-fPIC -g" -DGKLIB_PATH=../headers -DMPI_INCLUDE_PATH=/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -DSHARED=1 -DCMAKE_INSTALL_RPATH_USE_LINK_PATH:BOOL=ON -DDEBUG=1 -DMETIS_USE_LONGINDEX=1 -DMETIS_USE_DOUBLEPRECISION=1 stdout: -- The C compiler identification is Intel 12.1.0.20120612 -- The CXX compiler identification is Intel 12.1.0.20120612 -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Configuring done -- Generating done -- Build files have been written to: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build =============================================================================== Compiling and installing PARMETIS; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /usr/bin/gmake -j 24 && /usr/bin/gmake install stdout: /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report 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/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 22 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 23 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 24 [ 2%] [ 7%] [ 5%] [ 10%] [ 12%] [ 15%] [ 17%] [ 20%] [ 22%] [ 25%] [ 27%] [ 32%] [ 30%] [ 35%] [ 37%] [ 40%] [ 45%] [ 42%] [ 52%] [ 52%] [ 55%] [ 55%] [ 60%] [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ComputeVertexSeparator.c Building C object libparmetis/CMakeFiles/parmetis.dir/comm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/comm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/comm.c Building C object libparmetis/CMakeFiles/parmetis.dir/ametis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ametis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ametis.c Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/akwayfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/akwayfm.c Building C object libparmetis/CMakeFiles/parmetis.dir/match.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/match.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/match.c Building C object libparmetis/CMakeFiles/parmetis.dir/kmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/kmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/kmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/graph.c Building C object libparmetis/CMakeFiles/parmetis.dir/mdiffusion.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mdiffusion.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mdiffusion.c Building C object libparmetis/CMakeFiles/parmetis.dir/gkmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/gkmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/gkmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/move.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/move.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/move.c Building C object libparmetis/CMakeFiles/parmetis.dir/initpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initpart.c Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/initbalance.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/balancemylink.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initbalance.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initbalance.c Building C object libparmetis/CMakeFiles/parmetis.dir/frename.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/gkmpi.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/frename.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/frename.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/gkmpi.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/gkmpi.c Building C object libparmetis/CMakeFiles/parmetis.dir/mesh.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/mmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mesh.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mesh.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/debug.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/debug.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/debug.c Building C object libparmetis/CMakeFiles/parmetis.dir/initmsection.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/msetup.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initmsection.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initmsection.c Building C object libparmetis/CMakeFiles/parmetis.dir/ctrl.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/msetup.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/msetup.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ctrl.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ctrl.c Building C object libparmetis/CMakeFiles/parmetis.dir/diffutil.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/csrmatch.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/diffutil.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/diffutil.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/csrmatch.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/csrmatch.c Building C object libparmetis/CMakeFiles/parmetis.dir/kwayrefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/kwayrefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/kwayrefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 25 [ 62%] Building C object libparmetis/CMakeFiles/parmetis.dir/node_refine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/node_refine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/node_refine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 26 [ 65%] Building C object libparmetis/CMakeFiles/parmetis.dir/ometis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ometis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ometis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 27 [ 67%] Building C object libparmetis/CMakeFiles/parmetis.dir/pspases.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/pspases.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/pspases.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 28 [ 70%] Building C object libparmetis/CMakeFiles/parmetis.dir/redomylink.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/redomylink.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/redomylink.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 29 [ 72%] Building C object libparmetis/CMakeFiles/parmetis.dir/remap.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/remap.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/remap.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 30 [ 75%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 31 Building C object libparmetis/CMakeFiles/parmetis.dir/renumber.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/renumber.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/renumber.c [ 77%] Building C object libparmetis/CMakeFiles/parmetis.dir/rmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/rmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/rmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 32 [ 80%] Building C object libparmetis/CMakeFiles/parmetis.dir/selectq.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/selectq.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/selectq.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 33 [ 82%] Building C object libparmetis/CMakeFiles/parmetis.dir/serial.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/serial.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/serial.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 34 [ 85%] Building C object libparmetis/CMakeFiles/parmetis.dir/stat.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/stat.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/stat.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 35 [ 87%] Building C object libparmetis/CMakeFiles/parmetis.dir/timer.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/timer.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/timer.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 36 [ 90%] Building C object libparmetis/CMakeFiles/parmetis.dir/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 37 [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/wave.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/wave.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/wave.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 38 [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/weird.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/weird.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/weird.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 39 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 40 [ 97%] [100%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/wspace.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/wspace.c Building C object libparmetis/CMakeFiles/parmetis.dir/xyzpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/xyzpart.c Linking C shared library libparmetis.so cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -fPIC -fPIC -wd1572 -g -shared -Wl,-soname,libparmetis.so -o libparmetis.so CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/timer.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/xyzpart.c.o -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/lib:/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib: gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [100%] Built target parmetis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' gmake[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [100%] Built target parmetis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' Install the project... /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.so -- Set runtime path of "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.so" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib" ********Output of running make on parmetis follows ******* -- The C compiler identification is Intel 12.1.0.20120612 -- The CXX compiler identification is Intel 12.1.0.20120612 -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Configuring done -- Generating done -- Build files have been written to: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/buildCMake Warning: Manually-specified variables were not used by the project: CMAKE_Fortran_FLAGS DEBUG METIS_USE_DOUBLEPRECISION METIS_USE_LONGINDEX /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= Scanning dependencies of target parmetis gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 2 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 3 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 4 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 5 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report 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/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 11 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 12 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 13 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 14 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 15 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 16 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 17 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 18 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 19 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 20 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 21 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 22 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 23 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 24 [ 2%] [ 7%] [ 5%] [ 10%] [ 12%] [ 15%] [ 17%] [ 20%] [ 22%] [ 25%] [ 27%] [ 32%] [ 30%] [ 35%] [ 37%] [ 40%] [ 45%] [ 42%] [ 52%] [ 52%] [ 55%] [ 55%] [ 60%] [ 60%] Building C object libparmetis/CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ComputeVertexSeparator.c Building C object libparmetis/CMakeFiles/parmetis.dir/comm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/comm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/comm.c Building C object libparmetis/CMakeFiles/parmetis.dir/ametis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ametis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ametis.c Building C object libparmetis/CMakeFiles/parmetis.dir/akwayfm.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/akwayfm.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/akwayfm.c Building C object libparmetis/CMakeFiles/parmetis.dir/match.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/match.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/match.c Building C object libparmetis/CMakeFiles/parmetis.dir/kmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/kmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/kmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/graph.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/graph.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/graph.c Building C object libparmetis/CMakeFiles/parmetis.dir/mdiffusion.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mdiffusion.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mdiffusion.c Building C object libparmetis/CMakeFiles/parmetis.dir/gkmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/gkmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/gkmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/move.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/move.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/move.c Building C object libparmetis/CMakeFiles/parmetis.dir/initpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initpart.c Building C object libparmetis/CMakeFiles/parmetis.dir/balancemylink.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/initbalance.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/balancemylink.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/balancemylink.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initbalance.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initbalance.c Building C object libparmetis/CMakeFiles/parmetis.dir/frename.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/gkmpi.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/frename.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/frename.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/gkmpi.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/gkmpi.c Building C object libparmetis/CMakeFiles/parmetis.dir/mesh.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/mmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mesh.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mesh.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/mmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/mmetis.c Building C object libparmetis/CMakeFiles/parmetis.dir/debug.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/debug.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/debug.c Building C object libparmetis/CMakeFiles/parmetis.dir/initmsection.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/msetup.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/initmsection.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/initmsection.c Building C object libparmetis/CMakeFiles/parmetis.dir/ctrl.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/msetup.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/msetup.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ctrl.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ctrl.c Building C object libparmetis/CMakeFiles/parmetis.dir/diffutil.c.o Building C object libparmetis/CMakeFiles/parmetis.dir/csrmatch.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/diffutil.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/diffutil.c cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/csrmatch.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/csrmatch.c Building C object libparmetis/CMakeFiles/parmetis.dir/kwayrefine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/kwayrefine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/kwayrefine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 25 [ 62%] Building C object libparmetis/CMakeFiles/parmetis.dir/node_refine.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/node_refine.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/node_refine.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 26 [ 65%] Building C object libparmetis/CMakeFiles/parmetis.dir/ometis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/ometis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/ometis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 27 [ 67%] Building C object libparmetis/CMakeFiles/parmetis.dir/pspases.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/pspases.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/pspases.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 28 [ 70%] Building C object libparmetis/CMakeFiles/parmetis.dir/redomylink.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/redomylink.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/redomylink.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 29 [ 72%] Building C object libparmetis/CMakeFiles/parmetis.dir/remap.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/remap.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/remap.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 30 [ 75%] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 31 Building C object libparmetis/CMakeFiles/parmetis.dir/renumber.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/renumber.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/renumber.c [ 77%] Building C object libparmetis/CMakeFiles/parmetis.dir/rmetis.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/rmetis.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/rmetis.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 32 [ 80%] Building C object libparmetis/CMakeFiles/parmetis.dir/selectq.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/selectq.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/selectq.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 33 [ 82%] Building C object libparmetis/CMakeFiles/parmetis.dir/serial.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/serial.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/serial.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 34 [ 85%] Building C object libparmetis/CMakeFiles/parmetis.dir/stat.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/stat.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/stat.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 35 [ 87%] Building C object libparmetis/CMakeFiles/parmetis.dir/timer.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/timer.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/timer.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 36 [ 90%] Building C object libparmetis/CMakeFiles/parmetis.dir/util.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/util.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/util.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 37 [ 92%] Building C object libparmetis/CMakeFiles/parmetis.dir/wave.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/wave.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/wave.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 38 [ 95%] Building C object libparmetis/CMakeFiles/parmetis.dir/weird.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/weird.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/weird.c /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 39 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 40 [ 97%] [100%] Building C object libparmetis/CMakeFiles/parmetis.dir/wspace.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/wspace.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/wspace.c Building C object libparmetis/CMakeFiles/parmetis.dir/xyzpart.c.o cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -Dparmetis_EXPORTS -fPIC -wd1572 -g -fPIC -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/. -o CMakeFiles/parmetis.dir/xyzpart.c.o -c /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/xyzpart.c Linking C shared library libparmetis.so cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_link_script CMakeFiles/parmetis.dir/link.txt --verbose=1 /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -fPIC -fPIC -wd1572 -g -shared -Wl,-soname,libparmetis.so -o libparmetis.so CMakeFiles/parmetis.dir/ComputeVertexSeparator.c.o CMakeFiles/parmetis.dir/akwayfm.c.o CMakeFiles/parmetis.dir/ametis.c.o CMakeFiles/parmetis.dir/balancemylink.c.o CMakeFiles/parmetis.dir/comm.c.o CMakeFiles/parmetis.dir/csrmatch.c.o CMakeFiles/parmetis.dir/ctrl.c.o CMakeFiles/parmetis.dir/debug.c.o CMakeFiles/parmetis.dir/diffutil.c.o CMakeFiles/parmetis.dir/frename.c.o CMakeFiles/parmetis.dir/gkmetis.c.o CMakeFiles/parmetis.dir/gkmpi.c.o CMakeFiles/parmetis.dir/graph.c.o CMakeFiles/parmetis.dir/initbalance.c.o CMakeFiles/parmetis.dir/initmsection.c.o CMakeFiles/parmetis.dir/initpart.c.o CMakeFiles/parmetis.dir/kmetis.c.o CMakeFiles/parmetis.dir/kwayrefine.c.o CMakeFiles/parmetis.dir/match.c.o CMakeFiles/parmetis.dir/mdiffusion.c.o CMakeFiles/parmetis.dir/mesh.c.o CMakeFiles/parmetis.dir/mmetis.c.o CMakeFiles/parmetis.dir/move.c.o CMakeFiles/parmetis.dir/msetup.c.o CMakeFiles/parmetis.dir/node_refine.c.o CMakeFiles/parmetis.dir/ometis.c.o CMakeFiles/parmetis.dir/pspases.c.o CMakeFiles/parmetis.dir/redomylink.c.o CMakeFiles/parmetis.dir/remap.c.o CMakeFiles/parmetis.dir/renumber.c.o CMakeFiles/parmetis.dir/rmetis.c.o CMakeFiles/parmetis.dir/selectq.c.o CMakeFiles/parmetis.dir/serial.c.o CMakeFiles/parmetis.dir/stat.c.o CMakeFiles/parmetis.dir/timer.c.o CMakeFiles/parmetis.dir/util.c.o CMakeFiles/parmetis.dir/wave.c.o CMakeFiles/parmetis.dir/weird.c.o CMakeFiles/parmetis.dir/wspace.c.o CMakeFiles/parmetis.dir/xyzpart.c.o -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/metis/lib:/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib: gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [100%] Built target parmetis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -H/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 -B/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build --check-build-system CMakeFiles/Makefile.cmake 0 /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles/progress.marks /usr/bin/gmake -f CMakeFiles/Makefile2 all gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/depend gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build && /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_depends "Unix Makefiles" /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/libparmetis/CMakeFiles/parmetis.dir/DependInfo.cmake --color= gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /usr/bin/gmake -f libparmetis/CMakeFiles/parmetis.dir/build.make libparmetis/CMakeFiles/parmetis.dir/build gmake[2]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' gmake[2]: Nothing to be done for `libparmetis/CMakeFiles/parmetis.dir/build'. gmake[2]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_report /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 [100%] Built target parmetis gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -E cmake_progress_start /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build/CMakeFiles 0 /usr/bin/gmake -f CMakeFiles/Makefile2 preinstall gmake[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' gmake[1]: Nothing to be done for `preinstall'. gmake[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/build' Install the project... /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h -- Installing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.so -- Set runtime path of "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.so" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib"/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/libparmetis/wave.c(253): warning #177: label "CleanUpAndExit" was declared but never referenced CleanUpAndExit: ^ ********End of Output of running make on parmetis ******* Executing: cp -f /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2/parmetis.petscconf /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/parmetis Checking for library in Download PARMETIS: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.a'] Contents: ['include', 'lib', 'bin', 'externalpackages', 'share'] ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [ParMETIS_V3_PartKway] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libparmetis.a'] ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libmetis.a'] Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif char ParMETIS_V3_PartKway(); static void _check_ParMETIS_V3_PartKway() { ParMETIS_V3_PartKway(); } #ifdef __cplusplus } #endif int main() { _check_ParMETIS_V3_PartKway();; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lparmetis -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBPARMETIS" to "1" Popping language Cxx Checking for headers Download PARMETIS: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Pushing language Cxx ================================================================================ TEST checkInclude from config.headers(/glade/p/work/fandek/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['parmetis.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Checking include with compiler flags var CPPFLAGS ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include', '/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include'] Executing: mpicxx -E -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include /glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc stdout: # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/confdefs.h" 1 # 2 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conffix.h" 1 extern "C" { } # 3 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 # 1 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h" 1 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 extern "C" { # 28 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 35 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 44 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 60 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Datatype; # 101 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_char = ((MPI_Datatype)0x4c000101); static const MPI_Datatype mpich_mpi_signed_char = ((MPI_Datatype)0x4c000118); static const MPI_Datatype mpich_mpi_unsigned_char = ((MPI_Datatype)0x4c000102); static const MPI_Datatype mpich_mpi_wchar = ((MPI_Datatype)0x4c00040e); static const MPI_Datatype mpich_mpi_short = ((MPI_Datatype)0x4c000203); static const MPI_Datatype mpich_mpi_unsigned_short = ((MPI_Datatype)0x4c000204); static const MPI_Datatype mpich_mpi_int = ((MPI_Datatype)0x4c000405); static const MPI_Datatype mpich_mpi_unsigned = ((MPI_Datatype)0x4c000406); static const MPI_Datatype mpich_mpi_long = ((MPI_Datatype)0x4c000807); static const MPI_Datatype mpich_mpi_unsigned_long = ((MPI_Datatype)0x4c000808); static const MPI_Datatype mpich_mpi_float = ((MPI_Datatype)0x4c00040a); static const MPI_Datatype mpich_mpi_double = ((MPI_Datatype)0x4c00080b); static const MPI_Datatype mpich_mpi_long_double = ((MPI_Datatype)0x4c00100c); static const MPI_Datatype mpich_mpi_long_long_int = ((MPI_Datatype)0x4c000809); static const MPI_Datatype mpich_mpi_unsigned_long_long = ((MPI_Datatype)0x4c000819); # 137 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" struct mpich_struct_mpi_float_int { float f; int i; }; struct mpich_struct_mpi_double_int { double d; int i; }; struct mpich_struct_mpi_long_int { long l; int i; }; struct mpich_struct_mpi_short_int { short s; int i; }; struct mpich_struct_mpi_2int { int i1; int i2; }; struct mpich_struct_mpi_long_double_int { long double ld; int i; }; static const MPI_Datatype mpich_mpi_float_int = ((MPI_Datatype)0x8c000000); static const MPI_Datatype mpich_mpi_double_int = ((MPI_Datatype)0x8c000001); static const MPI_Datatype mpich_mpi_long_int = ((MPI_Datatype)0x8c000002); static const MPI_Datatype mpich_mpi_short_int = ((MPI_Datatype)0x8c000003); static const MPI_Datatype mpich_mpi_2int = ((MPI_Datatype)0x4c000816); static const MPI_Datatype mpich_mpi_long_double_int = ((MPI_Datatype)0x8c000004); # 160 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 174 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 187 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 197 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_int8_t = ((MPI_Datatype)0x4c000137); static const MPI_Datatype mpich_mpi_int16_t = ((MPI_Datatype)0x4c000238); static const MPI_Datatype mpich_mpi_int32_t = ((MPI_Datatype)0x4c000439); static const MPI_Datatype mpich_mpi_int64_t = ((MPI_Datatype)0x4c00083a); static const MPI_Datatype mpich_mpi_uint8_t = ((MPI_Datatype)0x4c00013b); static const MPI_Datatype mpich_mpi_uint16_t = ((MPI_Datatype)0x4c00023c); static const MPI_Datatype mpich_mpi_uint32_t = ((MPI_Datatype)0x4c00043d); static const MPI_Datatype mpich_mpi_uint64_t = ((MPI_Datatype)0x4c00083e); static const MPI_Datatype mpich_mpi_c_bool = ((MPI_Datatype)0x4c00013f); static const MPI_Datatype mpich_mpi_c_float_complex = ((MPI_Datatype)0x4c000840); static const MPI_Datatype mpich_mpi_c_double_complex = ((MPI_Datatype)0x4c001041); static const MPI_Datatype mpich_mpi_c_long_double_complex = ((MPI_Datatype)0x4c002042); typedef int MPI_Comm; typedef int MPI_Group; typedef int MPI_Win; typedef int MPI_File; typedef int MPI_Op; # 264 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 285 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 303 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" static const MPI_Datatype mpich_mpi_datatype_null = ((MPI_Datatype)0x0c000000); typedef enum MPIR_Win_flavor_e { MPIX_WIN_FLAVOR_CREATE = 1, MPIX_WIN_FLAVOR_ALLOCATE = 2, MPIX_WIN_FLAVOR_DYNAMIC = 3, MPIX_WIN_FLAVOR_SHARED = 4 } MPIR_Win_flavor_t; typedef enum MPIR_Win_model_e { MPIX_WIN_SEPARATE = 1, MPIX_WIN_UNIFIED = 2 } MPIR_Win_model_t; typedef enum MPIR_Topo_type { MPI_GRAPH=1, MPI_CART=2, MPI_DIST_GRAPH=3 } MPIR_Topo_type; extern int * const MPI_UNWEIGHTED; typedef void (MPI_Handler_function) ( MPI_Comm *, int *, ... ); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef void (MPI_File_errhandler_function)(MPI_File *, int *, ...); typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn; typedef MPI_File_errhandler_function MPI_File_errhandler_fn; typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn; typedef int MPI_Errhandler; # 400 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int MPI_Request; typedef int MPIX_Message; typedef void (MPI_User_function) ( void *, void *, int *, MPI_Datatype * ); typedef int (MPI_Copy_function) ( MPI_Comm, int, void *, void *, void *, int * ); typedef int (MPI_Delete_function) ( MPI_Comm, int, void *, void * ); enum MPIR_Combiner_enum { MPI_COMBINER_NAMED = 1, MPI_COMBINER_DUP = 2, MPI_COMBINER_CONTIGUOUS = 3, MPI_COMBINER_VECTOR = 4, MPI_COMBINER_HVECTOR_INTEGER = 5, MPI_COMBINER_HVECTOR = 6, MPI_COMBINER_INDEXED = 7, MPI_COMBINER_HINDEXED_INTEGER = 8, MPI_COMBINER_HINDEXED = 9, MPI_COMBINER_INDEXED_BLOCK = 10, MPIX_COMBINER_HINDEXED_BLOCK = 11, MPI_COMBINER_STRUCT_INTEGER = 12, MPI_COMBINER_STRUCT = 13, MPI_COMBINER_SUBARRAY = 14, MPI_COMBINER_DARRAY = 15, MPI_COMBINER_F90_REAL = 16, MPI_COMBINER_F90_COMPLEX = 17, MPI_COMBINER_F90_INTEGER = 18, MPI_COMBINER_RESIZED = 19 }; typedef int MPI_Info; # 491 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef long MPI_Aint; typedef int MPI_Fint; static const MPI_Datatype mpich_mpi_aint = ((MPI_Datatype)0x4c000843); typedef long long MPI_Offset; static const MPI_Datatype mpich_mpi_offset = ((MPI_Datatype)0x4c000844); typedef struct MPI_Status { int count; int cancelled; int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; } MPI_Status; struct MPIR_T_enum; typedef struct MPIR_T_enum * MPIX_T_enum; struct MPIR_T_cvar_handle; typedef struct MPIR_T_cvar_handle * MPIX_T_cvar_handle; struct MPIR_T_pvar_handle; typedef struct MPIR_T_pvar_handle * MPIX_T_pvar_handle; struct MPIR_T_pvar_session; typedef struct MPIR_T_pvar_session * MPIX_T_pvar_session; extern struct MPIR_T_pvar_handle * const MPIX_T_PVAR_ALL_HANDLES; enum MPIR_T_verbosity_t { MPIX_T_VERBOSITY_INVALID = 0, MPIX_T_VERBOSITY_USER_BASIC = 221, MPIX_T_VERBOSITY_USER_DETAIL, MPIX_T_VERBOSITY_USER_ALL, MPIX_T_VERBOSITY_TUNER_BASIC, MPIX_T_VERBOSITY_TUNER_DETAIL, MPIX_T_VERBOSITY_TUNER_ALL, MPIX_T_VERBOSITY_MPIDEV_BASIC, MPIX_T_VERBOSITY_MPIDEV_DETAIL, MPIX_T_VERBOSITY_MPIDEV_ALL }; enum MPIR_T_bind_t { MPIX_T_BIND_INVALID = 0, MPIX_T_BIND_NO_OBJECT = 9700, MPIX_T_BIND_MPI_COMM, MPIX_T_BIND_MPI_DATATYPE, MPIX_T_BIND_MPI_ERRHANDLER, MPIX_T_BIND_MPI_FILE, MPIX_T_BIND_MPI_GROUP, MPIX_T_BIND_MPI_OP, MPIX_T_BIND_MPI_REQUEST, MPIX_T_BIND_MPI_WIN, MPIX_T_BIND_MPI_MESSAGE, MPIX_T_BIND_MPI_INFO }; enum MPIR_T_scope_t { MPIX_T_SCOPE_INVALID = 0, MPIX_T_SCOPE_READONLY = 60439, MPIX_T_SCOPE_LOCAL, MPIX_T_SCOPE_GROUP, MPIX_T_SCOPE_GROUP_EQ, MPIX_T_SCOPE_ALL, MPIX_T_SCOPE_ALL_EQ }; enum MPIR_T_pvar_class_t { MPIX_T_PVAR_CLASS_INVALID = 0, MPIX_T_PVAR_CLASS_STATE = 240, MPIX_T_PVAR_CLASS_LEVEL, MPIX_T_PVAR_CLASS_SIZE, MPIX_T_PVAR_CLASS_PERCENTAGE, MPIX_T_PVAR_CLASS_HIGHWATERMARK, MPIX_T_PVAR_CLASS_LOWWATERMARK, MPIX_T_PVAR_CLASS_COUNTER, MPIX_T_PVAR_CLASS_AGGREGATE, MPIX_T_PVAR_CLASS_TIMER, MPIX_T_PVAR_CLASS_GENERIC }; # 646 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 666 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" extern MPI_Fint * MPI_F_STATUS_IGNORE; extern MPI_Fint * MPI_F_STATUSES_IGNORE; typedef int (MPI_Grequest_cancel_function)(void *, int); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); # 707 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 744 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 761 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 770 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype datatype, MPI_Aint *, void *); int MPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Get_count( MPI_Status *, MPI_Datatype, int *); int MPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int MPI_Buffer_attach( void*, int); int MPI_Buffer_detach( void*, int *); int MPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Wait(MPI_Request *, MPI_Status *); int MPI_Test(MPI_Request *, int *, MPI_Status *); int MPI_Request_free(MPI_Request *); int MPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int MPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Waitall(int, MPI_Request *, MPI_Status *); int MPI_Testall(int, MPI_Request *, int *, MPI_Status *); int MPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int MPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int MPI_Probe(int, int, MPI_Comm, MPI_Status *); int MPI_Cancel(MPI_Request *); int MPI_Test_cancelled( MPI_Status *, int *); int MPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int MPI_Bsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Ssend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Rsend_init( void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Recv_init(void*, int, MPI_Datatype, int,int, MPI_Comm, MPI_Request *) ; int MPI_Start(MPI_Request *); int MPI_Startall(int, MPI_Request *); int MPI_Sendrecv( void *, int, MPI_Datatype,int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int MPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int MPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int MPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int MPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int MPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int MPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int MPI_Address( void*, MPI_Aint *); int MPI_Type_extent(MPI_Datatype, MPI_Aint *); int MPI_Type_size(MPI_Datatype, int *); int MPI_Type_lb(MPI_Datatype, MPI_Aint *); int MPI_Type_ub(MPI_Datatype, MPI_Aint *); int MPI_Type_commit(MPI_Datatype *); int MPI_Type_free(MPI_Datatype *); int MPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int MPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int MPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int MPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int MPI_Barrier(MPI_Comm ); int MPI_Bcast(void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int MPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int MPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int MPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int MPI_Op_create(MPI_User_function *, int, MPI_Op *); int MPI_Op_free( MPI_Op *); int MPI_Allreduce( void*, void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Group_size(MPI_Group, int *); int MPI_Group_rank(MPI_Group, int *); int MPI_Group_translate_ranks (MPI_Group, int, int *, MPI_Group, int *); int MPI_Group_compare(MPI_Group, MPI_Group, int *); int MPI_Comm_group(MPI_Comm, MPI_Group *); int MPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int MPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int MPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int MPI_Group_free(MPI_Group *); int MPI_Comm_size(MPI_Comm, int *); int MPI_Comm_rank(MPI_Comm, int *); int MPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int MPI_Comm_dup(MPI_Comm, MPI_Comm *); int MPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int MPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int MPI_Comm_free(MPI_Comm *); int MPI_Comm_test_inter(MPI_Comm, int *); int MPI_Comm_remote_size(MPI_Comm, int *); int MPI_Comm_remote_group(MPI_Comm, MPI_Group *); int MPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm * ); int MPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int MPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int MPI_Keyval_free(int *); int MPI_Attr_put(MPI_Comm, int, void*); int MPI_Attr_get(MPI_Comm, int, void *, int *); int MPI_Attr_delete(MPI_Comm, int); int MPI_Topo_test(MPI_Comm, int *); int MPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Dims_create(int, int, int *); int MPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int MPI_Graphdims_get(MPI_Comm, int *, int *); int MPI_Graph_get(MPI_Comm, int, int, int *, int *); int MPI_Cartdim_get(MPI_Comm, int *); int MPI_Cart_get(MPI_Comm, int, int *, int *, int *); int MPI_Cart_rank(MPI_Comm, int *, int *); int MPI_Cart_coords(MPI_Comm, int, int, int *); int MPI_Graph_neighbors_count(MPI_Comm, int, int *); int MPI_Graph_neighbors(MPI_Comm, int, int, int *); int MPI_Cart_shift(MPI_Comm, int, int, int *, int *); int MPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int MPI_Cart_map(MPI_Comm, int, int *, int *, int *); int MPI_Graph_map(MPI_Comm, int, int *, int *, int *); int MPI_Get_processor_name(char *, int *); int MPI_Get_version(int *, int *); int MPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int MPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int MPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int MPI_Errhandler_free(MPI_Errhandler *); int MPI_Error_string(int, char *, int *); int MPI_Error_class(int, int *); double MPI_Wtime(void); double MPI_Wtick(void); double PMPI_Wtime(void); double PMPI_Wtick(void); int MPI_Init(int *, char ***); int MPI_Finalize(void); int MPI_Initialized(int *); int MPI_Abort(MPI_Comm, int); int MPI_Pcontrol(const int, ...); int MPIR_Dup_fn ( MPI_Comm, int, void *, void *, void *, int * ); int MPI_Close_port( char *); int MPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int MPI_Comm_disconnect(MPI_Comm *); int MPI_Comm_get_parent(MPI_Comm *); int MPI_Comm_join(int, MPI_Comm *); int MPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int MPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int MPI_Lookup_name( char *, MPI_Info, char *); int MPI_Open_port(MPI_Info, char *); int MPI_Publish_name( char *, MPI_Info, char *); int MPI_Unpublish_name( char *, MPI_Info, char *); int MPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int MPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int MPI_Win_complete(MPI_Win); int MPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int MPI_Win_fence(int, MPI_Win); int MPI_Win_free(MPI_Win *); int MPI_Win_get_group(MPI_Win, MPI_Group *); int MPI_Win_lock(int, int, int, MPI_Win); int MPI_Win_post(MPI_Group, int, MPI_Win); int MPI_Win_start(MPI_Group, int, MPI_Win); int MPI_Win_test(MPI_Win, int *); int MPI_Win_unlock(int, MPI_Win); int MPI_Win_wait(MPI_Win); int MPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int MPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int MPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int MPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int MPIX_Win_detach(MPI_Win win, const void *base); int MPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int MPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int MPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int MPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int MPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int MPIX_Win_lock_all(int assert, MPI_Win win); int MPIX_Win_unlock_all(MPI_Win win); int MPIX_Win_flush(int rank, MPI_Win win); int MPIX_Win_flush_all(MPI_Win win); int MPIX_Win_flush_local(int rank, MPI_Win win); int MPIX_Win_flush_local_all(MPI_Win win); int MPIX_Win_sync(MPI_Win win); int MPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int MPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int MPI_Add_error_class(int *); int MPI_Add_error_code(int, int *); int MPI_Add_error_string(int, char *); int MPI_Comm_call_errhandler(MPI_Comm, int); int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int MPI_Comm_delete_attr(MPI_Comm, int); int MPI_Comm_free_keyval(int *); int MPI_Comm_get_attr(MPI_Comm, int, void *, int *); int MPI_Comm_get_name(MPI_Comm, char *, int *); int MPI_Comm_set_attr(MPI_Comm, int, void *); int MPI_Comm_set_name(MPI_Comm, char *); int MPI_File_call_errhandler(MPI_File, int); int MPI_Grequest_complete(MPI_Request); int MPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int MPI_Init_thread(int *, char ***, int, int *); int MPI_Is_thread_main(int *); int MPI_Query_thread(int *); int MPI_Status_set_cancelled(MPI_Status *, int); int MPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int MPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int MPI_Type_delete_attr(MPI_Datatype, int); int MPI_Type_dup(MPI_Datatype, MPI_Datatype *); int MPI_Type_free_keyval(int *); int MPI_Type_get_attr(MPI_Datatype, int, void *, int *); int MPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int MPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int MPI_Type_get_name(MPI_Datatype, char *, int *); int MPI_Type_set_attr(MPI_Datatype, int, void *); int MPI_Type_set_name(MPI_Datatype, char *); int MPI_Type_match_size( int, int, MPI_Datatype *); int MPI_Win_call_errhandler(MPI_Win, int); int MPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int MPI_Win_delete_attr(MPI_Win, int); int MPI_Win_free_keyval(int *); int MPI_Win_get_attr(MPI_Win, int, void *, int *); int MPI_Win_get_name(MPI_Win, char *, int *); int MPI_Win_set_attr(MPI_Win, int, void *); int MPI_Win_set_name(MPI_Win, char *); # 1113 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" int MPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int MPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int MPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int MPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int MPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int MPI_File_set_errhandler(MPI_File, MPI_Errhandler); int MPI_Finalized(int *); int MPI_Free_mem(void *); int MPI_Get_address( void *, MPI_Aint *); int MPI_Info_create(MPI_Info *); int MPI_Info_delete(MPI_Info, char *); int MPI_Info_dup(MPI_Info, MPI_Info *); int MPI_Info_free(MPI_Info *info); int MPI_Info_get(MPI_Info, char *, int, char *, int *); int MPI_Info_get_nkeys(MPI_Info, int *); int MPI_Info_get_nthkey(MPI_Info, int, char *); int MPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int MPI_Info_set(MPI_Info, char *, char *); int MPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int MPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int MPI_Request_get_status(MPI_Request, int *, MPI_Status *); int MPI_Status_c2f( MPI_Status *, MPI_Fint *); int MPI_Status_f2c( MPI_Fint *, MPI_Status *); int MPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int MPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int MPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int MPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int MPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int MPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int MPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int MPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int MPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int MPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int MPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int MPI_Type_create_f90_integer( int, MPI_Datatype * ); int MPI_Type_create_f90_real( int, int, MPI_Datatype * ); int MPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int MPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int MPI_Op_commutative(MPI_Op op, int *commute); int MPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int MPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int MPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int MPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int MPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int MPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int MPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int MPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int MPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int MPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int MPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int MPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int MPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int MPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int MPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int MPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); struct mpixi_mutex_s; typedef struct mpixi_mutex_s * MPIX_Mutex; int MPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int MPIX_Mutex_free(MPIX_Mutex *hdl); int MPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int MPIX_T_init_thread(int required, int *provided); int MPIX_T_finalize(void); int MPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int MPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int MPIX_T_cvar_get_num(int *num_cvar); int MPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int MPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int MPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int MPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int MPIX_T_pvar_get_num(int *num_pvar); int MPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int MPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int MPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int MPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int MPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int MPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int MPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int MPIX_T_category_get_num(int *num_cat); int MPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int MPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int MPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int MPIX_T_category_get_categories(int cat_index, int len, int indices[]); int MPIX_T_category_changed(int *stamp); int PMPI_Send( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Recv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Get_count( MPI_Status *, MPI_Datatype, int *); int PMPI_Bsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Ssend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Rsend( void*, int, MPI_Datatype, int, int, MPI_Comm) ; int PMPI_Buffer_attach( void* buffer, int); int PMPI_Buffer_detach( void* buffer, int *); int PMPI_Isend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ibsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Issend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irsend( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Irecv(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Wait(MPI_Request *, MPI_Status *); int PMPI_Test(MPI_Request *, int *, MPI_Status *); int PMPI_Request_free(MPI_Request *); int PMPI_Waitany(int, MPI_Request *, int *, MPI_Status *); int PMPI_Testany(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Waitall(int, MPI_Request *, MPI_Status *); int PMPI_Testall(int, MPI_Request *, int *, MPI_Status *); int PMPI_Waitsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Testsome(int, MPI_Request *, int *, int *, MPI_Status *); int PMPI_Iprobe(int, int, MPI_Comm, int *, MPI_Status *); int PMPI_Probe(int, int, MPI_Comm, MPI_Status *); int PMPI_Cancel(MPI_Request *); int PMPI_Test_cancelled( MPI_Status *, int *); int PMPI_Send_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Bsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Ssend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Rsend_init( void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Recv_init(void*, int, MPI_Datatype, int, int, MPI_Comm, MPI_Request *) ; int PMPI_Start(MPI_Request *); int PMPI_Startall(int, MPI_Request *); int PMPI_Sendrecv( void *, int, MPI_Datatype, int, int, void *, int, MPI_Datatype, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Sendrecv_replace(void*, int, MPI_Datatype, int, int, int, int, MPI_Comm, MPI_Status *) ; int PMPI_Type_contiguous(int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_vector(int, int, int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_indexed(int, int *, int *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_hindexed(int, int *, MPI_Aint *, MPI_Datatype, MPI_Datatype *); int PMPI_Type_struct(int, int *, MPI_Aint *, MPI_Datatype *, MPI_Datatype *); int PMPI_Address( void*, MPI_Aint *); int PMPI_Type_extent(MPI_Datatype, MPI_Aint *); int PMPI_Type_size(MPI_Datatype, int *); int PMPI_Type_lb(MPI_Datatype, MPI_Aint *); int PMPI_Type_ub(MPI_Datatype, MPI_Aint *); int PMPI_Type_commit(MPI_Datatype *); int PMPI_Type_free(MPI_Datatype *); int PMPI_Get_elements( MPI_Status *, MPI_Datatype, int *); int PMPI_Pack( void*, int, MPI_Datatype, void *, int, int *, MPI_Comm) ; int PMPI_Unpack( void*, int, int *, void *, int, MPI_Datatype, MPI_Comm) ; int PMPI_Pack_size(int, MPI_Datatype, MPI_Comm, int *); int PMPI_Barrier(MPI_Comm ); int PMPI_Bcast(void* buffer, int, MPI_Datatype, int, MPI_Comm ); int PMPI_Gather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Gatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatter( void* , int, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Scatterv( void* , int *, int *, MPI_Datatype, void*, int, MPI_Datatype, int, MPI_Comm) ; int PMPI_Allgather( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Allgatherv( void* , int, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoall( void* , int, MPI_Datatype, void*, int, MPI_Datatype, MPI_Comm) ; int PMPI_Alltoallv( void* , int *, int *, MPI_Datatype, void*, int *, int *, MPI_Datatype, MPI_Comm) ; int PMPI_Reduce( void* , void*, int, MPI_Datatype, MPI_Op, int, MPI_Comm) ; int PMPI_Op_create(MPI_User_function *, int, MPI_Op *); int PMPI_Op_free( MPI_Op *); int PMPI_Allreduce( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Reduce_scatter( void* , void*, int *, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Scan( void* , void*, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Group_size(MPI_Group, int *); int PMPI_Group_rank(MPI_Group, int *); int PMPI_Group_translate_ranks(MPI_Group, int, int *, MPI_Group, int *); int PMPI_Group_compare(MPI_Group, MPI_Group, int *); int PMPIX_Comm_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Comm_reenable_anysource(MPI_Comm, MPI_Group *); int PMPIX_Comm_remote_group_failed(MPI_Comm, MPI_Group *); int PMPIX_Mutex_create(int count, MPI_Comm comm, MPIX_Mutex *hdl); int PMPIX_Mutex_free(MPIX_Mutex *hdl); int PMPIX_Mutex_lock(MPIX_Mutex hdl, int mutex, int proc); int PMPIX_Mutex_unlock(MPIX_Mutex hdl, int mutex, int proc); int PMPI_Comm_group(MPI_Comm, MPI_Group *); int PMPI_Group_union(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_intersection(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_difference(MPI_Group, MPI_Group, MPI_Group *); int PMPI_Group_incl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_excl(MPI_Group, int, int *, MPI_Group *); int PMPI_Group_range_incl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_range_excl(MPI_Group, int, int [][3], MPI_Group *); int PMPI_Group_free(MPI_Group *); int PMPI_Comm_size(MPI_Comm, int *); int PMPI_Comm_rank(MPI_Comm, int *); int PMPI_Comm_compare(MPI_Comm, MPI_Comm, int *); int PMPI_Comm_dup(MPI_Comm, MPI_Comm *); int PMPI_Comm_create(MPI_Comm, MPI_Group, MPI_Comm *); int PMPI_Comm_split(MPI_Comm, int, int, MPI_Comm *); int PMPI_Comm_free(MPI_Comm *); int PMPI_Comm_test_inter(MPI_Comm, int *); int PMPI_Comm_remote_size(MPI_Comm, int *); int PMPI_Comm_remote_group(MPI_Comm, MPI_Group *); int PMPI_Intercomm_create(MPI_Comm, int, MPI_Comm, int, int, MPI_Comm *); int PMPI_Intercomm_merge(MPI_Comm, int, MPI_Comm *); int PMPI_Keyval_create(MPI_Copy_function *, MPI_Delete_function *, int *, void*); int PMPI_Keyval_free(int *); int PMPI_Attr_put(MPI_Comm, int, void*); int PMPI_Attr_get(MPI_Comm, int, void *, int *); int PMPI_Attr_delete(MPI_Comm, int); int PMPI_Topo_test(MPI_Comm, int *); int PMPI_Cart_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Dims_create(int, int, int *); int PMPI_Graph_create(MPI_Comm, int, int *, int *, int, MPI_Comm *); int PMPI_Graphdims_get(MPI_Comm, int *, int *); int PMPI_Graph_get(MPI_Comm, int, int, int *, int *); int PMPI_Cartdim_get(MPI_Comm, int *); int PMPI_Cart_get(MPI_Comm, int, int *, int *, int *); int PMPI_Cart_rank(MPI_Comm, int *, int *); int PMPI_Cart_coords(MPI_Comm, int, int, int *); int PMPI_Graph_neighbors_count(MPI_Comm, int, int *); int PMPI_Graph_neighbors(MPI_Comm, int, int, int *); int PMPI_Cart_shift(MPI_Comm, int, int, int *, int *); int PMPI_Cart_sub(MPI_Comm, int *, MPI_Comm *); int PMPI_Cart_map(MPI_Comm, int, int *, int *, int *); int PMPI_Graph_map(MPI_Comm, int, int *, int *, int *); int PMPI_Get_processor_name(char *, int *); int PMPI_Get_version(int *, int *); int PMPI_Errhandler_create(MPI_Handler_function *, MPI_Errhandler *); int PMPI_Errhandler_set(MPI_Comm, MPI_Errhandler); int PMPI_Errhandler_get(MPI_Comm, MPI_Errhandler *); int PMPI_Errhandler_free(MPI_Errhandler *); int PMPI_Error_string(int, char *, int *); int PMPI_Error_class(int, int *); int PMPI_Init(int *, char ***); int PMPI_Finalize(void); int PMPI_Initialized(int *); int PMPI_Abort(MPI_Comm, int); int PMPI_Pcontrol(const int, ...); int PMPI_Close_port( char *); int PMPI_Comm_accept( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_connect( char *, MPI_Info, int, MPI_Comm, MPI_Comm *); int PMPI_Comm_disconnect(MPI_Comm *); int PMPI_Comm_get_parent(MPI_Comm *); int PMPI_Comm_join(int, MPI_Comm *); int PMPI_Comm_spawn( char *, char *[], int, MPI_Info, int, MPI_Comm, MPI_Comm *, int []); int PMPI_Comm_spawn_multiple(int, char *[], char **[], int [], MPI_Info [], int, MPI_Comm, MPI_Comm *, int []); int PMPI_Lookup_name( char *, MPI_Info, char *); int PMPI_Open_port(MPI_Info, char *); int PMPI_Publish_name( char *, MPI_Info, char *); int PMPI_Unpublish_name( char *, MPI_Info, char *); int PMPI_Accumulate( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Op, MPI_Win) ; int PMPI_Get(void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Put( void *, int, MPI_Datatype, int, MPI_Aint, int, MPI_Datatype, MPI_Win) ; int PMPI_Win_complete(MPI_Win); int PMPI_Win_create(void *, MPI_Aint, int, MPI_Info, MPI_Comm, MPI_Win *); int PMPI_Win_fence(int, MPI_Win); int PMPI_Win_free(MPI_Win *); int PMPI_Win_get_group(MPI_Win, MPI_Group *); int PMPI_Win_lock(int, int, int, MPI_Win); int PMPI_Win_post(MPI_Group, int, MPI_Win); int PMPI_Win_start(MPI_Group, int, MPI_Win); int PMPI_Win_test(MPI_Win, int *); int PMPI_Win_unlock(int, MPI_Win); int PMPI_Win_wait(MPI_Win); int PMPIX_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); int PMPIX_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); int PMPIX_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); int PMPIX_Win_attach(MPI_Win win, void *base, MPI_Aint size); int PMPIX_Win_detach(MPI_Win win, const void *base); int PMPIX_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); int PMPIX_Fetch_and_op(const void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); int PMPIX_Compare_and_swap(const void *origin_addr, const void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); int PMPIX_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); int PMPIX_Raccumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); int PMPIX_Win_lock_all(int assert, MPI_Win win); int PMPIX_Win_unlock_all(MPI_Win win); int PMPIX_Win_flush(int rank, MPI_Win win); int PMPIX_Win_flush_all(MPI_Win win); int PMPIX_Win_flush_local(int rank, MPI_Win win); int PMPIX_Win_flush_local_all(MPI_Win win); int PMPIX_Win_sync(MPI_Win win); int PMPI_Alltoallw( void *, int [], int [], MPI_Datatype [], void *, int [], int [], MPI_Datatype [], MPI_Comm); int PMPI_Exscan( void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm) ; int PMPI_Add_error_class(int *); int PMPI_Add_error_code(int, int *); int PMPI_Add_error_string(int, char *); int PMPI_Comm_call_errhandler(MPI_Comm, int); int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *, MPI_Comm_delete_attr_function *, int *, void *); int PMPI_Comm_delete_attr(MPI_Comm, int); int PMPI_Comm_free_keyval(int *); int PMPI_Comm_get_attr(MPI_Comm, int, void *, int *); int PMPI_Comm_get_name(MPI_Comm, char *, int *); int PMPI_Comm_set_attr(MPI_Comm, int, void *); int PMPI_Comm_set_name(MPI_Comm, char *); int PMPI_File_call_errhandler(MPI_File, int); int PMPI_Grequest_complete(MPI_Request); int PMPI_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, void *, MPI_Request *); int PMPI_Init_thread(int *, char ***, int, int *); int PMPI_Is_thread_main(int *); int PMPI_Query_thread(int *); int PMPI_Status_set_cancelled(MPI_Status *, int); int PMPI_Status_set_elements(MPI_Status *, MPI_Datatype, int); int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *, MPI_Type_delete_attr_function *, int *, void *); int PMPI_Type_delete_attr(MPI_Datatype, int); int PMPI_Type_dup(MPI_Datatype, MPI_Datatype *); int PMPI_Type_free_keyval(int *); int PMPI_Type_get_attr(MPI_Datatype, int, void *, int *); int PMPI_Type_get_contents(MPI_Datatype, int, int, int, int [], MPI_Aint [], MPI_Datatype []); int PMPI_Type_get_envelope(MPI_Datatype, int *, int *, int *, int *); int PMPI_Type_get_name(MPI_Datatype, char *, int *); int PMPI_Type_set_attr(MPI_Datatype, int, void *); int PMPI_Type_set_name(MPI_Datatype, char *); int PMPI_Type_match_size( int, int, MPI_Datatype *); int PMPI_Win_call_errhandler(MPI_Win, int); int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *, MPI_Win_delete_attr_function *, int *, void *); int PMPI_Win_delete_attr(MPI_Win, int); int PMPI_Win_free_keyval(int *); int PMPI_Win_get_attr(MPI_Win, int, void *, int *); int PMPI_Win_get_name(MPI_Win, char *, int *); int PMPI_Win_set_attr(MPI_Win, int, void *); int PMPI_Win_set_name(MPI_Win, char *); int PMPI_Type_create_f90_integer( int, MPI_Datatype * ); int PMPI_Type_create_f90_real( int, int, MPI_Datatype * ); int PMPI_Type_create_f90_complex( int, int, MPI_Datatype * ); int PMPI_Alloc_mem(MPI_Aint, MPI_Info info, void *baseptr); int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *, MPI_Errhandler *); int PMPI_Comm_get_errhandler(MPI_Comm, MPI_Errhandler *); int PMPI_Comm_set_errhandler(MPI_Comm, MPI_Errhandler); int PMPI_File_create_errhandler(MPI_File_errhandler_function *, MPI_Errhandler *); int PMPI_File_get_errhandler(MPI_File, MPI_Errhandler *); int PMPI_File_set_errhandler(MPI_File, MPI_Errhandler); int PMPI_Finalized(int *); int PMPI_Free_mem(void *); int PMPI_Get_address( void *, MPI_Aint *); int PMPI_Info_create(MPI_Info *); int PMPI_Info_delete(MPI_Info, char *); int PMPI_Info_dup(MPI_Info, MPI_Info *); int PMPI_Info_free(MPI_Info *info); int PMPI_Info_get(MPI_Info, char *, int, char *, int *); int PMPI_Info_get_nkeys(MPI_Info, int *); int PMPI_Info_get_nthkey(MPI_Info, int, char *); int PMPI_Info_get_valuelen(MPI_Info, char *, int *, int *); int PMPI_Info_set(MPI_Info, char *, char *); int PMPI_Pack_external( char *, void *, int, MPI_Datatype, void *, MPI_Aint, MPI_Aint *) ; int PMPI_Pack_external_size( char *, int, MPI_Datatype, MPI_Aint *); int PMPI_Request_get_status(MPI_Request, int *, MPI_Status *); int PMPI_Status_c2f( MPI_Status *, MPI_Fint *); int PMPI_Status_f2c( MPI_Fint *, MPI_Status *); int PMPI_Type_create_darray(int, int, int, int [], int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hindexed(int, int [], MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_hvector(int, int, MPI_Aint, MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_indexed_block(int, int, int [], MPI_Datatype, MPI_Datatype *); int PMPIX_Type_create_hindexed_block(int, int, const MPI_Aint [], MPI_Datatype, MPI_Datatype *); int PMPI_Type_create_resized(MPI_Datatype, MPI_Aint, MPI_Aint, MPI_Datatype *); int PMPI_Type_create_struct(int, int [], MPI_Aint [], MPI_Datatype [], MPI_Datatype *); int PMPI_Type_create_subarray(int, int [], int [], int [], int, MPI_Datatype, MPI_Datatype *); int PMPI_Type_get_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Type_get_true_extent(MPI_Datatype, MPI_Aint *, MPI_Aint *); int PMPI_Unpack_external( char *, void *, MPI_Aint, MPI_Aint *, void *, int, MPI_Datatype) ; int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *, MPI_Errhandler *); int PMPI_Win_get_errhandler(MPI_Win, MPI_Errhandler *); int PMPI_Win_set_errhandler(MPI_Win, MPI_Errhandler); int PMPI_Reduce_local( void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op) ; int PMPI_Op_commutative(MPI_Op op, int *commute); int PMPI_Reduce_scatter_block( void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm) ; int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, int [], int [], int outdegree, int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, int [], int [], int [], int [], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *indegree, int *outdegree, int *weighted); int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int [], int [], int maxoutdegree, int [], int []); int PMPIX_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); int PMPIX_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPIX_Message *message, MPI_Status *status); int PMPIX_Imrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Request *request) ; int PMPIX_Mprobe(int source, int tag, MPI_Comm comm, MPIX_Message *message, MPI_Status *status); int PMPIX_Mrecv(void *buf, int count, MPI_Datatype datatype, MPIX_Message *message, MPI_Status *status) ; int PMPIX_Ibarrier(MPI_Comm comm, MPI_Request *request); int PMPIX_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscatterv(const void *sendbuf, const int *sendcounts, const int *displs, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *displs, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallv(const void *sendbuf, const int *sendcounts, const int *sdispls, MPI_Datatype sendtype, void *recvbuf, const int *recvcounts, const int *rdispls, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ialltoallw(const void *sendbuf, const int *sendcounts, const int *sdispls, const MPI_Datatype *sendtypes, void *recvbuf, const int *recvcounts, const int *rdispls, const MPI_Datatype *recvtypes, MPI_Comm comm, MPI_Request *request); int PMPIX_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int *recvcounts, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request) ; int PMPIX_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); int PMPIX_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm) ; int PMPIX_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); int PMPIX_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); int PMPIX_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm * newcomm); int PMPIX_T_init_thread(int required, int *provided); int PMPIX_T_finalize(void); int PMPIX_T_enum_get_info(MPIX_T_enum enumtype, int num, char *name, int *name_len); int PMPIX_T_enum_get_item(MPIX_T_enum enumtype, int num, int *value, char *name, int *name_len); int PMPIX_T_cvar_get_num(int *num_cvar); int PMPIX_T_cvar_get_info(int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); int PMPIX_T_cvar_handle_alloc(int cvar_index, void *obj_handle, MPIX_T_cvar_handle *handle, int *count); int PMPIX_T_cvar_handle_free(MPIX_T_cvar_handle *handle); int PMPIX_T_cvar_read(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_cvar_write(MPIX_T_cvar_handle handle, void *buf); int PMPIX_T_pvar_get_num(int *num_pvar); int PMPIX_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPIX_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); int PMPIX_T_pvar_session_create(MPIX_T_pvar_session *session); int PMPIX_T_pvar_session_free(MPIX_T_pvar_session *session); int PMPIX_T_pvar_handle_alloc(MPIX_T_pvar_session session, int pvar_index, void *obj_handle, MPIX_T_pvar_handle *handle, int *count); int PMPIX_T_pvar_handle_free(MPIX_T_pvar_session session, MPIX_T_pvar_handle *handle); int PMPIX_T_pvar_start(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_stop(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_read(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_write(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_pvar_reset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle); int PMPIX_T_pvar_readreset(MPIX_T_pvar_session session, MPIX_T_pvar_handle handle, void *buf); int PMPIX_T_category_get_num(int *num_cat); int PMPIX_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_controlvars, int *num_pvars, int *num_categories); int PMPIX_T_category_get_cvars(int cat_index, int len, int indices[]); int PMPIX_T_category_get_pvars(int cat_index[], int len, int indices[]); int PMPIX_T_category_get_categories(int cat_index, int len, int indices[]); int PMPIX_T_category_changed(int *stamp); # 1690 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 1 # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 1 # 14 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" 2 extern "C" { # 33 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 40 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 53 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 70 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 80 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 108 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int MPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int MPI_File_close(MPI_File *); int MPI_File_delete( char *, MPI_Info); int MPI_File_set_size(MPI_File, MPI_Offset); int MPI_File_preallocate(MPI_File, MPI_Offset); int MPI_File_get_size(MPI_File, MPI_Offset *); int MPI_File_get_group(MPI_File, MPI_Group *); int MPI_File_get_amode(MPI_File, int *); int MPI_File_set_info(MPI_File, MPI_Info); int MPI_File_get_info(MPI_File, MPI_Info *); int MPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int MPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int MPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_seek(MPI_File, MPI_Offset, int); int MPI_File_get_position(MPI_File, MPI_Offset *); int MPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int MPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int MPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int MPI_File_seek_shared(MPI_File, MPI_Offset, int); int MPI_File_get_position_shared(MPI_File, MPI_Offset *); int MPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int MPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_all_end(MPI_File, void *, MPI_Status *); int MPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_all_end(MPI_File, void *, MPI_Status *); int MPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int MPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int MPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int MPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int MPI_File_set_atomicity(MPI_File, int); int MPI_File_get_atomicity(MPI_File, int *); int MPI_File_sync(MPI_File); # 258 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 271 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File MPI_File_f2c(MPI_Fint); MPI_Fint MPI_File_c2f(MPI_File); # 292 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 321 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" int PMPI_File_open(MPI_Comm, char *, int, MPI_Info, MPI_File *); int PMPI_File_close(MPI_File *); int PMPI_File_delete( char *, MPI_Info); int PMPI_File_set_size(MPI_File, MPI_Offset); int PMPI_File_preallocate(MPI_File, MPI_Offset); int PMPI_File_get_size(MPI_File, MPI_Offset *); int PMPI_File_get_group(MPI_File, MPI_Group *); int PMPI_File_get_amode(MPI_File, int *); int PMPI_File_set_info(MPI_File, MPI_Info); int PMPI_File_get_info(MPI_File, MPI_Info *); int PMPI_File_set_view(MPI_File, MPI_Offset, MPI_Datatype, MPI_Datatype, char *, MPI_Info); int PMPI_File_get_view(MPI_File, MPI_Offset *, MPI_Datatype *, MPI_Datatype *, char *); int PMPI_File_read_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_at_all(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_at(MPI_File, MPI_Offset, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_read_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_all(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_seek(MPI_File, MPI_Offset, int); int PMPI_File_get_position(MPI_File, MPI_Offset *); int PMPI_File_get_byte_offset(MPI_File, MPI_Offset, MPI_Offset *); int PMPI_File_read_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_shared(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_iread_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_iwrite_shared(MPI_File, void *, int, MPI_Datatype, MPI_Request *) ; int PMPI_File_read_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_write_ordered(MPI_File, void *, int, MPI_Datatype, MPI_Status *) ; int PMPI_File_seek_shared(MPI_File, MPI_Offset, int); int PMPI_File_get_position_shared(MPI_File, MPI_Offset *); int PMPI_File_read_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_read_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_at_all_begin(MPI_File, MPI_Offset, void *, int, MPI_Datatype) ; int PMPI_File_write_at_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_all_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_all_end(MPI_File, void *, MPI_Status *); int PMPI_File_read_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_read_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_write_ordered_begin(MPI_File, void *, int, MPI_Datatype) ; int PMPI_File_write_ordered_end(MPI_File, void *, MPI_Status *); int PMPI_File_get_type_extent(MPI_File, MPI_Datatype, MPI_Aint *); int PMPI_Register_datarep( char *, MPI_Datarep_conversion_function *, MPI_Datarep_conversion_function *, MPI_Datarep_extent_function *, void *); int PMPI_File_set_atomicity(MPI_File, int); int PMPI_File_get_atomicity(MPI_File, int *); int PMPI_File_sync(MPI_File); # 465 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" MPI_File PMPI_File_f2c(MPI_Fint); MPI_Fint PMPI_File_c2f(MPI_File); # 485 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" # 502 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpio.h" } # 1692 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 } # 1 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 1 # 26 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 41 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" # 1 "/usr/include/stdio.h" 1 3 # 1 "/usr/include/features.h" 1 3 # 121 "/usr/include/features.h" 3 # 144 "/usr/include/features.h" 3 # 176 "/usr/include/features.h" 3 # 185 "/usr/include/features.h" 3 # 217 "/usr/include/features.h" 3 # 241 "/usr/include/features.h" 3 # 273 "/usr/include/features.h" 3 # 325 "/usr/include/features.h" 3 # 357 "/usr/include/features.h" 3 # 1 "/usr/include/sys/cdefs.h" 1 3 # 58 "/usr/include/sys/cdefs.h" 3 # 71 "/usr/include/sys/cdefs.h" 3 # 96 "/usr/include/sys/cdefs.h" 3 # 111 "/usr/include/sys/cdefs.h" 3 # 121 "/usr/include/sys/cdefs.h" 3 # 149 "/usr/include/sys/cdefs.h" 3 # 166 "/usr/include/sys/cdefs.h" 3 # 190 "/usr/include/sys/cdefs.h" 3 # 234 "/usr/include/sys/cdefs.h" 3 # 264 "/usr/include/sys/cdefs.h" 3 # 287 "/usr/include/sys/cdefs.h" 3 # 323 "/usr/include/sys/cdefs.h" 3 # 333 "/usr/include/sys/cdefs.h" 3 # 364 "/usr/include/sys/cdefs.h" 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 366 "/usr/include/sys/cdefs.h" 2 3 # 398 "/usr/include/sys/cdefs.h" 3 # 362 "/usr/include/features.h" 2 3 # 1 "/usr/include/gnu/stubs.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 5 "/usr/include/gnu/stubs.h" 2 3 # 1 "/usr/include/gnu/stubs-64.h" 1 3 # 10 "/usr/include/gnu/stubs.h" 2 3 # 386 "/usr/include/features.h" 2 3 # 29 "/usr/include/stdio.h" 2 3 extern "C" { # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 typedef long ptrdiff_t; typedef unsigned long size_t; # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 35 "/usr/include/stdio.h" 2 3 # 1 "/usr/include/bits/types.h" 1 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/bits/types.h" 2 3 typedef unsigned char __u_char; typedef unsigned short int __u_short; typedef unsigned int __u_int; typedef unsigned long int __u_long; typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef signed short int __int16_t; typedef unsigned short int __uint16_t; typedef signed int __int32_t; typedef unsigned int __uint32_t; typedef signed long int __int64_t; typedef unsigned long int __uint64_t; typedef long int __quad_t; typedef unsigned long int __u_quad_t; # 68 "/usr/include/bits/types.h" 3 # 126 "/usr/include/bits/types.h" 3 # 1 "/usr/include/bits/typesizes.h" 1 3 # 61 "/usr/include/bits/typesizes.h" 3 # 132 "/usr/include/bits/types.h" 2 3 typedef unsigned long int __dev_t; typedef unsigned int __uid_t; typedef unsigned int __gid_t; typedef unsigned long int __ino_t; typedef unsigned long int __ino64_t; typedef unsigned int __mode_t; typedef unsigned long int __nlink_t; typedef long int __off_t; typedef long int __off64_t; typedef int __pid_t; typedef struct { int __val[2]; } __fsid_t; typedef long int __clock_t; typedef unsigned long int __rlim_t; typedef unsigned long int __rlim64_t; typedef unsigned int __id_t; typedef long int __time_t; typedef unsigned int __useconds_t; typedef long int __suseconds_t; typedef int __daddr_t; typedef long int __swblk_t; typedef int __key_t; typedef int __clockid_t; typedef void * __timer_t; typedef long int __blksize_t; typedef long int __blkcnt_t; typedef long int __blkcnt64_t; typedef unsigned long int __fsblkcnt_t; typedef unsigned long int __fsblkcnt64_t; typedef unsigned long int __fsfilcnt_t; typedef unsigned long int __fsfilcnt64_t; typedef long int __ssize_t; typedef __off64_t __loff_t; typedef __quad_t *__qaddr_t; typedef char *__caddr_t; typedef long int __intptr_t; typedef unsigned int __socklen_t; # 37 "/usr/include/stdio.h" 2 3 struct _IO_FILE; typedef struct _IO_FILE FILE; typedef struct _IO_FILE __FILE; # 1 "/usr/include/libio.h" 1 3 # 1 "/usr/include/_G_config.h" 1 3 # 1 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 1 3 # 42 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 53 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 71 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 83 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 91 "/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/include/stddef.h" 3 # 16 "/usr/include/_G_config.h" 2 3 # 1 "/usr/include/wchar.h" 1 3 # 79 "/usr/include/wchar.h" 3 typedef struct { int __count; union { unsigned int __wch; char __wchb[4]; } __value; } __mbstate_t; # 892 "/usr/include/wchar.h" 3 # 21 "/usr/include/_G_config.h" 2 3 typedef struct { __off_t __pos; __mbstate_t __state; } _G_fpos_t; typedef struct { __off64_t __pos; __mbstate_t __state; } _G_fpos64_t; # 52 "/usr/include/_G_config.h" 3 typedef int _G_int16_t __attribute__ ((__mode__ (__HI__))); typedef int _G_int32_t __attribute__ ((__mode__ (__SI__))); typedef unsigned int _G_uint16_t __attribute__ ((__mode__ (__HI__))); typedef unsigned int _G_uint32_t __attribute__ ((__mode__ (__SI__))); # 74 "/usr/include/_G_config.h" 3 # 33 "/usr/include/libio.h" 2 3 # 49 "/usr/include/libio.h" 3 # 1 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 1 3 # 35 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 typedef __builtin_va_list __gnuc_va_list; # 128 "/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include/stdarg.h" 3 # 54 "/usr/include/libio.h" 2 3 # 73 "/usr/include/libio.h" 3 # 88 "/usr/include/libio.h" 3 # 104 "/usr/include/libio.h" 3 # 113 "/usr/include/libio.h" 3 # 139 "/usr/include/libio.h" 3 # 149 "/usr/include/libio.h" 3 # 168 "/usr/include/libio.h" 3 struct _IO_jump_t; struct _IO_FILE; # 180 "/usr/include/libio.h" 3 typedef void _IO_lock_t; struct _IO_marker { struct _IO_marker *_next; struct _IO_FILE *_sbuf; int _pos; # 203 "/usr/include/libio.h" 3 }; enum __codecvt_result { __codecvt_ok, __codecvt_partial, __codecvt_error, __codecvt_noconv }; # 270 "/usr/include/libio.h" 3 struct _IO_FILE { int _flags; char* _IO_read_ptr; char* _IO_read_end; char* _IO_read_base; char* _IO_write_base; char* _IO_write_ptr; char* _IO_write_end; char* _IO_buf_base; char* _IO_buf_end; char *_IO_save_base; char *_IO_backup_base; char *_IO_save_end; struct _IO_marker *_markers; struct _IO_FILE *_chain; int _fileno; int _flags2; __off_t _old_offset; unsigned short _cur_column; signed char _vtable_offset; char _shortbuf[1]; _IO_lock_t *_lock; # 319 "/usr/include/libio.h" 3 __off64_t _offset; # 328 "/usr/include/libio.h" 3 void *__pad1; void *__pad2; void *__pad3; void *__pad4; size_t __pad5; int _mode; char _unused2[15 * sizeof (int) - 4 * sizeof (void *) - sizeof (size_t)]; }; struct _IO_FILE_plus; extern struct _IO_FILE_plus _IO_2_1_stdin_; extern struct _IO_FILE_plus _IO_2_1_stdout_; extern struct _IO_FILE_plus _IO_2_1_stderr_; # 358 "/usr/include/libio.h" 3 typedef __ssize_t __io_read_fn (void *__cookie, char *__buf, size_t __nbytes); typedef __ssize_t __io_write_fn (void *__cookie, __const char *__buf, size_t __n); typedef int __io_seek_fn (void *__cookie, __off64_t *__pos, int __w); typedef int __io_close_fn (void *__cookie); typedef __io_read_fn cookie_read_function_t; typedef __io_write_fn cookie_write_function_t; typedef __io_seek_fn cookie_seek_function_t; typedef __io_close_fn cookie_close_function_t; typedef struct { __io_read_fn *read; __io_write_fn *write; __io_seek_fn *seek; __io_close_fn *close; } _IO_cookie_io_functions_t; typedef _IO_cookie_io_functions_t cookie_io_functions_t; struct _IO_cookie_file; extern void _IO_cookie_init (struct _IO_cookie_file *__cfile, int __read_write, void *__cookie, _IO_cookie_io_functions_t __fns); extern "C" { extern int __underflow (_IO_FILE *); extern int __uflow (_IO_FILE *); extern int __overflow (_IO_FILE *, int); # 442 "/usr/include/libio.h" 3 # 456 "/usr/include/libio.h" 3 extern int _IO_getc (_IO_FILE *__fp); extern int _IO_putc (int __c, _IO_FILE *__fp); extern int _IO_feof (_IO_FILE *__fp) throw (); extern int _IO_ferror (_IO_FILE *__fp) throw (); extern int _IO_peekc_locked (_IO_FILE *__fp); extern void _IO_flockfile (_IO_FILE *) throw (); extern void _IO_funlockfile (_IO_FILE *) throw (); extern int _IO_ftrylockfile (_IO_FILE *) throw (); # 489 "/usr/include/libio.h" 3 extern int _IO_vfscanf (_IO_FILE * __restrict, const char * __restrict, __gnuc_va_list, int *__restrict); extern int _IO_vfprintf (_IO_FILE *__restrict, const char *__restrict, __gnuc_va_list); extern __ssize_t _IO_padn (_IO_FILE *, int, __ssize_t); extern size_t _IO_sgetn (_IO_FILE *, void *, size_t); extern __off64_t _IO_seekoff (_IO_FILE *, __off64_t, int, int); extern __off64_t _IO_seekpos (_IO_FILE *, __off64_t, int); extern void _IO_free_backup_area (_IO_FILE *) throw (); # 546 "/usr/include/libio.h" 3 } # 76 "/usr/include/stdio.h" 2 3 typedef __gnuc_va_list va_list; # 87 "/usr/include/stdio.h" 3 typedef __off_t off_t; # 98 "/usr/include/stdio.h" 3 typedef __off64_t off64_t; typedef __ssize_t ssize_t; typedef _G_fpos_t fpos_t; typedef _G_fpos64_t fpos64_t; # 1 "/usr/include/bits/stdio_lim.h" 1 3 # 35 "/usr/include/bits/stdio_lim.h" 3 # 162 "/usr/include/stdio.h" 2 3 extern struct _IO_FILE *stdin; extern struct _IO_FILE *stdout; extern struct _IO_FILE *stderr; extern int remove (__const char *__filename) throw (); extern int rename (__const char *__old, __const char *__new) throw (); extern int renameat (int __oldfd, __const char *__old, int __newfd, __const char *__new) throw (); extern FILE *tmpfile (void) ; # 202 "/usr/include/stdio.h" 3 extern FILE *tmpfile64 (void) ; extern char *tmpnam (char *__s) throw () ; extern char *tmpnam_r (char *__s) throw () ; extern char *tempnam (__const char *__dir, __const char *__pfx) throw () __attribute__ ((__malloc__)) ; extern int fclose (FILE *__stream); extern int fflush (FILE *__stream); extern int fflush_unlocked (FILE *__stream); extern int fcloseall (void); extern FILE *fopen (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; # 294 "/usr/include/stdio.h" 3 extern FILE *fopen64 (__const char *__restrict __filename, __const char *__restrict __modes) ; extern FILE *freopen64 (__const char *__restrict __filename, __const char *__restrict __modes, FILE *__restrict __stream) ; extern FILE *fdopen (int __fd, __const char *__modes) throw () ; extern FILE *fopencookie (void *__restrict __magic_cookie, __const char *__restrict __modes, _IO_cookie_io_functions_t __io_funcs) throw () ; extern FILE *fmemopen (void *__s, size_t __len, __const char *__modes) throw () ; extern FILE *open_memstream (char **__bufloc, size_t *__sizeloc) throw () ; extern void setbuf (FILE *__restrict __stream, char *__restrict __buf) throw (); extern int setvbuf (FILE *__restrict __stream, char *__restrict __buf, int __modes, size_t __n) throw (); extern void setbuffer (FILE *__restrict __stream, char *__restrict __buf, size_t __size) throw (); extern void setlinebuf (FILE *__stream) throw (); extern int fprintf (FILE *__restrict __stream, __const char *__restrict __format, ...); extern int printf (__const char *__restrict __format, ...); extern int sprintf (char *__restrict __s, __const char *__restrict __format, ...) throw (); extern int vfprintf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg); extern int vprintf (__const char *__restrict __format, __gnuc_va_list __arg); extern int vsprintf (char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw (); extern int snprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 3, 4))); extern int vsnprintf (char *__restrict __s, size_t __maxlen, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 3, 0))); extern int vasprintf (char **__restrict __ptr, __const char *__restrict __f, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__printf__, 2, 0))) ; extern int __asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int asprintf (char **__restrict __ptr, __const char *__restrict __fmt, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))) ; extern int vdprintf (int __fd, __const char *__restrict __fmt, __gnuc_va_list __arg) __attribute__ ((__format__ (__printf__, 2, 0))); extern int dprintf (int __fd, __const char *__restrict __fmt, ...) __attribute__ ((__format__ (__printf__, 2, 3))); extern int fscanf (FILE *__restrict __stream, __const char *__restrict __format, ...) ; extern int scanf (__const char *__restrict __format, ...) ; extern int sscanf (__const char *__restrict __s, __const char *__restrict __format, ...) throw (); # 466 "/usr/include/stdio.h" 3 extern int vfscanf (FILE *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 2, 0))) ; extern int vscanf (__const char *__restrict __format, __gnuc_va_list __arg) __attribute__ ((__format__ (__scanf__, 1, 0))) ; extern int vsscanf (__const char *__restrict __s, __const char *__restrict __format, __gnuc_va_list __arg) throw () __attribute__ ((__format__ (__scanf__, 2, 0))); # 525 "/usr/include/stdio.h" 3 extern int fgetc (FILE *__stream); extern int getc (FILE *__stream); extern int getchar (void); extern int getc_unlocked (FILE *__stream); extern int getchar_unlocked (void); extern int fgetc_unlocked (FILE *__stream); extern int fputc (int __c, FILE *__stream); extern int putc (int __c, FILE *__stream); extern int putchar (int __c); extern int fputc_unlocked (int __c, FILE *__stream); extern int putc_unlocked (int __c, FILE *__stream); extern int putchar_unlocked (int __c); extern int getw (FILE *__stream); extern int putw (int __w, FILE *__stream); extern char *fgets (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern char *gets (char *__s) ; extern char *fgets_unlocked (char *__restrict __s, int __n, FILE *__restrict __stream) ; extern __ssize_t __getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getdelim (char **__restrict __lineptr, size_t *__restrict __n, int __delimiter, FILE *__restrict __stream) ; extern __ssize_t getline (char **__restrict __lineptr, size_t *__restrict __n, FILE *__restrict __stream) ; extern int fputs (__const char *__restrict __s, FILE *__restrict __stream); extern int puts (__const char *__s); extern int ungetc (int __c, FILE *__stream); extern size_t fread (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __s) ; extern int fputs_unlocked (__const char *__restrict __s, FILE *__restrict __stream); extern size_t fread_unlocked (void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern size_t fwrite_unlocked (__const void *__restrict __ptr, size_t __size, size_t __n, FILE *__restrict __stream) ; extern int fseek (FILE *__stream, long int __off, int __whence); extern long int ftell (FILE *__stream) ; extern void rewind (FILE *__stream); extern int fseeko (FILE *__stream, __off_t __off, int __whence); extern __off_t ftello (FILE *__stream) ; # 786 "/usr/include/stdio.h" 3 extern int fgetpos (FILE *__restrict __stream, fpos_t *__restrict __pos); extern int fsetpos (FILE *__stream, __const fpos_t *__pos); # 810 "/usr/include/stdio.h" 3 extern int fseeko64 (FILE *__stream, __off64_t __off, int __whence); extern __off64_t ftello64 (FILE *__stream) ; extern int fgetpos64 (FILE *__restrict __stream, fpos64_t *__restrict __pos); extern int fsetpos64 (FILE *__stream, __const fpos64_t *__pos); extern void clearerr (FILE *__stream) throw (); extern int feof (FILE *__stream) throw () ; extern int ferror (FILE *__stream) throw () ; extern void clearerr_unlocked (FILE *__stream) throw (); extern int feof_unlocked (FILE *__stream) throw () ; extern int ferror_unlocked (FILE *__stream) throw () ; extern void perror (__const char *__s); # 1 "/usr/include/bits/sys_errlist.h" 1 3 extern int sys_nerr; extern __const char *__const sys_errlist[]; extern int _sys_nerr; extern __const char *__const _sys_errlist[]; # 849 "/usr/include/stdio.h" 2 3 extern int fileno (FILE *__stream) throw () ; extern int fileno_unlocked (FILE *__stream) throw () ; extern FILE *popen (__const char *__command, __const char *__modes) ; extern int pclose (FILE *__stream); extern char *ctermid (char *__s) throw (); extern char *cuserid (char *__s); struct obstack; extern int obstack_printf (struct obstack *__restrict __obstack, __const char *__restrict __format, ...) throw () __attribute__ ((__format__ (__printf__, 2, 3))); extern int obstack_vprintf (struct obstack *__restrict __obstack, __const char *__restrict __format, __gnuc_va_list __args) throw () __attribute__ ((__format__ (__printf__, 2, 0))); extern void flockfile (FILE *__stream) throw (); extern int ftrylockfile (FILE *__stream) throw () ; extern void funlockfile (FILE *__stream) throw (); # 925 "/usr/include/stdio.h" 3 # 937 "/usr/include/stdio.h" 3 } # 55 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" 2 enum MPIR_Dummy_seek_type { MPIR_DUMMY_SEEK_COMMA_VAL = -1 , MPIR_SEEK_SET = 0 , SEEK_SET = MPIR_SEEK_SET , MPIR_SEEK_CUR = 1 , SEEK_CUR = MPIR_SEEK_CUR , MPIR_SEEK_END = 2 , SEEK_END = MPIR_SEEK_END # 79 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" }; namespace MPI { # 90 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" extern void MPIR_Call_world_errhand( int ); typedef MPI_Offset Offset; typedef MPI_Aint Aint; typedef MPI_Fint Fint; void MPIR_CXX_InitDatatypeNames( void ); class Comm; class Nullcomm; class Intercomm; class Intracomm; class Cartcomm; class Graphcomm; class File; extern int Detach_buffer( void *&v1 ) ; extern bool Is_initialized( void ) ; extern void Get_processor_name( char * v1, int &v2 ) ; extern void Get_error_string( int v1, char * v2, int &v3 ) ; extern void Compute_dims( int v1, int v2, int * v3 ) ; extern void Get_version( int &v1, int &v2 ) ; extern void Finalize( void ) ; extern void Pcontrol( const int v1, ... ) ; extern void Attach_buffer( void* v1, int v2 ) ; extern int Get_error_class( int v1 ) ; extern Intracomm COMM_WORLD; extern File FILE_NULL; class Exception { protected: int the_real_exception; public: inline Exception(int obj) : the_real_exception(obj) {} inline Exception(void) : the_real_exception(0) {} virtual ~Exception() {} Exception(const Exception &obj) : the_real_exception(obj.the_real_exception){} Exception& operator=(const Exception &obj) { the_real_exception = obj.the_real_exception; return *this; } bool operator== (const Exception &obj) { return (the_real_exception == obj.the_real_exception); } bool operator!= (const Exception &obj) { return (the_real_exception != obj.the_real_exception); } inline operator int*() { return &the_real_exception; } inline operator int() const { return the_real_exception; } Exception& operator=(const int& obj) { the_real_exception = obj; return *this; } protected: char the_error_message[512]; public: int Get_error_code(void) { return the_real_exception; } int Get_error_class(void) { return MPI::Get_error_class(the_real_exception); } const char *Get_error_string(void) { int len; MPI_Error_string(the_real_exception, the_error_message, &len); return the_error_message; } }; class Datatype { friend class Comm; friend class Status; friend class Intracomm; friend class Intercomm; friend class Win; friend class File; friend class Op; protected: MPI_Datatype the_real_datatype; public: inline Datatype(MPI_Datatype obj) : the_real_datatype(obj) {} inline Datatype(void) : the_real_datatype(((MPI_Datatype)0x0c000000)) {} virtual ~Datatype() {} Datatype(const Datatype &obj) : the_real_datatype(obj.the_real_datatype){} Datatype& operator=(const Datatype &obj) { the_real_datatype = obj.the_real_datatype; return *this; } bool operator== (const Datatype &obj) { return (the_real_datatype == obj.the_real_datatype); } bool operator!= (const Datatype &obj) { return (the_real_datatype != obj.the_real_datatype); } inline operator MPI_Datatype*() { return &the_real_datatype; } inline operator MPI_Datatype() const { return the_real_datatype; } Datatype& operator=(const MPI_Datatype& obj) { the_real_datatype = obj; return *this; } virtual void Commit( void ) { { int err = MPI_Type_commit( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Free( void ) { { int err = MPI_Type_free( (MPI_Datatype *) &the_real_datatype ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual Datatype Create_indexed( int v1, const int * v2, const int * v3 ) const { Datatype v5; { int err = MPI_Type_indexed( v1, (int *)v2, (int *)v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } virtual Datatype Create_contiguous( int v1 ) const { Datatype v3; { int err = MPI_Type_contiguous( v1, (MPI_Datatype) the_real_datatype, &(v3 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual Datatype Create_vector( int v1, int v2, int v3 ) const { Datatype v5; { int err = MPI_Type_vector( v1, v2, v3, (MPI_Datatype) the_real_datatype, &(v5 . the_real_datatype) ) ; if (err) MPIR_Call_world_errhand( err ); }; return v5; } static Datatype Create_struct( int v1, int v2[], MPI_Aint v3[], const Datatype v4[] ) { Datatype v5; MPI_Datatype *l4 = new MPI_Datatype[v1]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; return v2; } virtual int Get_rank( void ) const { int v2; { int err = MPI_Comm_rank( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Prequest Bsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Bsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Prequest Ssend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Ssend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Is_inter( void ) const { int v2; { int err = MPI_Comm_test_inter( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual Prequest Rsend_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Rsend_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Request Ibsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Ibsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Abort( int v2 ) const { { int err = MPI_Abort( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Comm_free( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Send_init( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Send_init( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5, Status & v7 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)&(v7 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Recv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Recv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10, Status & v12 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)&(v12 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv( const void * v1, int v2, const Datatype &v3, int v4, int v5, void * v6, int v7, const Datatype &v8, int v9, int v10 ) const { { int err = MPI_Sendrecv( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Datatype)(v8 . the_real_datatype), v9, v10, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7, Status & v9 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)&(v9 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sendrecv_replace( void* v1, int v2, const Datatype &v3, int v4, int v5, int v6, int v7 ) const { { int err = MPI_Sendrecv_replace( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, v7, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_topology( void ) const { int v2; { int err = MPI_Topo_test( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Isend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Isend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Probe( int v1, int v2, Status & v4 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)&(v4 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Probe( int v1, int v2 ) const { { int err = MPI_Probe( v1, v2, (MPI_Comm) the_real_comm, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static int Compare( const Comm &v1, const Comm &v2 ) { int v3; { int err = MPI_Comm_compare( (MPI_Comm)(v1 . the_real_comm), (MPI_Comm)(v2 . the_real_comm), &v3 ) ; if (err) MPIR_Call_world_errhand( err ); }; return v3; } virtual int Get_size( void ) const { int v2; { int err = MPI_Comm_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Request Issend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Issend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Comm_set_errhandler( (MPI_Comm) the_real_comm, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Send( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Send( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual void Ssend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Ssend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Prequest Recv_init( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Prequest v7; { int err = MPI_Recv_init( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual bool Iprobe( int v1, int v2, Status & v5 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual bool Iprobe( int v1, int v2 ) const { int v4; { int err = MPI_Iprobe( v1, v2, (MPI_Comm) the_real_comm, &v4, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Bsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Bsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Irecv( void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { Request v7; { int err = MPI_Irecv( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm, &(v7 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v7; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Comm_get_errhandler( (MPI_Comm) the_real_comm, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Rsend( const void* v1, int v2, const Datatype &v3, int v4, int v5 ) const { { int err = MPI_Rsend( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter_block( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter_block( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Gatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7, int v8 ) const { { int err = MPI_Gatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Disconnect( void ) { { int err = MPI_Comm_disconnect( (MPI_Comm *) &the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allreduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Allreduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Alltoallw( const void * v1, const int v2[], const int v3[], const Datatype v4[], void * v5, const int v6[], const int v7[], const Datatype v8[] ) const { MPI_Datatype *l4 = new MPI_Datatype[Get_size()]; MPI_Datatype *l8 = new MPI_Datatype[Get_size()]; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; delete[] l8; } static Intercomm Join( const int v1 ) ; virtual void Alltoall( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Alltoall( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Comm_get_attr( (MPI_Comm) the_real_comm, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Barrier( void ) const { { int err = MPI_Barrier( (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Bcast( void* v1, int v2, const Datatype &v3, int v4 ) const { { int err = MPI_Bcast( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Comm_set_attr( (MPI_Comm) the_real_comm, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Comm_set_name( (MPI_Comm) the_real_comm, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } static Intercomm Get_parent( void ) ; virtual void Alltoallv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, const int * v6, const int * v7, const Datatype &v8 ) const { { int err = MPI_Alltoallv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, (int *)v6, (int *)v7, (MPI_Datatype)(v8 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Reduce_scatter( const void* v1, void* v2, int * v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Reduce_scatter( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatter( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Scatter( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Gather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6, int v7 ) const { { int err = MPI_Gather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), v7, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } static void Free_keyval( int &v1 ) { { int err = MPI_Comm_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Reduce( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5, int v6 ) const { { int err = MPI_Reduce( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), v6, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgather( const void* v1, int v2, const Datatype &v3, void* v4, int v5, const Datatype &v6 ) const { { int err = MPI_Allgather( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, (MPI_Datatype)(v6 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Comm_delete_attr( (MPI_Comm) the_real_comm, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Scatterv( const void* v1, const int * v2, const int * v3, const Datatype &v4, void* v5, int v6, const Datatype &v7, int v8 ) const { { int err = MPI_Scatterv( (void*)v1, (int *)v2, (int *)v3, (MPI_Datatype)(v4 . the_real_datatype), v5, v6, (MPI_Datatype)(v7 . the_real_datatype), v8, (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Comm_get_name( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Allgatherv( const void* v1, int v2, const Datatype &v3, void* v4, const int * v5, const int * v6, const Datatype &v7 ) const { { int err = MPI_Allgatherv( (void*)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, (int *)v5, (int *)v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Comm &Clone(void) const = 0; typedef int Copy_attr_function(const Comm& oldcomm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Comm& comm, int comm_keyval, void* attribute_val, void* extra_state); typedef void Errhandler_function(Comm &, int *, ... ); typedef Errhandler_function Errhandler_fn; static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 0; return 0;} static int NULL_DELETE_FN( Comm &comm __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Comm &oldcomm __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} static Errhandler Create_errhandler( Errhandler_function * ); }; class Nullcomm : public Comm { public: inline Nullcomm(MPI_Comm obj) : Comm(obj) {} inline Nullcomm(void) : Comm() {} virtual ~Nullcomm() {} Nullcomm(const Nullcomm &obj) : Comm(obj) {} Nullcomm& operator=(const Nullcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Nullcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } # 1525 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Nullcomm & Clone(void) const { Nullcomm *clone = new Nullcomm(); return *clone; }; }; class Intercomm : public Comm { friend class Intracomm; public: inline Intercomm(MPI_Comm obj) : Comm(obj) {} inline Intercomm(void) : Comm() {} virtual ~Intercomm() {} Intercomm(const Intercomm &obj) : Comm(obj) {} Intercomm& operator=(const Intercomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intercomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intracomm Merge( bool v2 ) const; virtual Group Get_remote_group( void ) const { Group v2; { int err = MPI_Comm_remote_group( (MPI_Comm) the_real_comm, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_remote_size( void ) const { int v2; { int err = MPI_Comm_remote_size( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } Intercomm Dup( void ) const { Intercomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Intercomm Split( int v2, int v3 ) const { Intercomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } # 1591 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intercomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intercomm *clone = new Intercomm(ncomm); return *clone; }; }; class Intracomm : public Comm { friend class Cartcomm; friend class Graphcomm; friend class Datatype; public: inline Intracomm(MPI_Comm obj) : Comm(obj) {} inline Intracomm(void) : Comm() {} virtual ~Intracomm() {} Intracomm(const Intracomm &obj) : Comm(obj) {} Intracomm& operator=(const Intracomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Intracomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual Intercomm Create_intercomm( int v2, const Comm &v3, int v4, int v5 ) const { Intercomm v6; { int err = MPI_Intercomm_create( (MPI_Comm) the_real_comm, v2, (MPI_Comm)(v3 . the_real_comm), v4, v5, &(v6 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual Intracomm Split( int v2, int v3 ) const { Intracomm v4; { int err = MPI_Comm_split( (MPI_Comm) the_real_comm, v2, v3, &(v4 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v4; } virtual Graphcomm Create_graph( int v2, const int * v3, const int * v4, bool v5 ) const; virtual Cartcomm Create_cart( int v2, const int * v3, const bool v4[], bool v5 ) const; virtual Intracomm Create( const Group &v2 ) const { Intracomm v3; { int err = MPI_Comm_create( (MPI_Comm) the_real_comm, (MPI_Group)(v2 . the_real_group), &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Intracomm Dup( void ) const { Intracomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Scan( const void* v1, void* v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Scan( (void*)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Exscan( const void * v1, void * v2, int v3, const Datatype &v4, const Op &v5 ) const { { int err = MPI_Exscan( (void *)v1, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Op)(v5 . the_real_op), (MPI_Comm) the_real_comm ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Intercomm Accept( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_accept( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Intercomm Connect( const char * v1, const Info &v2, int v3 ) const { Intercomm v5; { int err = MPI_Comm_connect( (char *)v1, (MPI_Info)(v2 . the_real_info), v3, (MPI_Comm) the_real_comm, &(v5 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } # 1682 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Intracomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Intracomm *clone = new Intracomm(ncomm); return *clone; }; Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), (int *)0 ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn(const char* command, const char* argv[], int maxprocs, const MPI::Info& info, int root, int array_of_errcodes[]) const { Intercomm ic; { int err = MPI_Comm_spawn( (char *)command, (char * *)argv, maxprocs, info . the_real_info, root, the_real_comm, &(ic . the_real_comm), array_of_errcodes ); if (err) { (this)->Call_errhandler( err ); }}; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } Intercomm Spawn_multiple(int count, const char* array_of_commands[], const char** array_of_argv[], const int array_of_maxprocs[], const MPI::Info array_of_info[], int root, int array_of_errcodes[]) { Intercomm ic; MPI_Info *li = new MPI_Info [count]; int i; for (i=0; iCall_errhandler( err ); }}; delete [] li; return ic; } }; class Grequest : public Request { public: inline Grequest(MPI_Request obj) : Request(obj) {} inline Grequest(void) : Request() {} virtual ~Grequest() {} Grequest(const Grequest &obj) : Request(obj) {} Grequest& operator=(const Grequest &obj) { the_real_request = obj.the_real_request; return *this; } bool operator== (const Grequest &obj) { return (the_real_request == obj.the_real_request); } bool operator!= (const Grequest &obj) { return (the_real_request != obj.the_real_request); } inline operator MPI_Request*() { return &the_real_request; } inline operator MPI_Request() const { return the_real_request; } Grequest& operator=(const MPI_Request& obj) { the_real_request = obj; return *this; } virtual void Complete( void ) { { int err = MPI_Grequest_complete( (MPI_Request) the_real_request ) ; if (err) MPIR_Call_world_errhand( err ); }; } typedef int Query_function( void *, Status & ); typedef int Free_function( void * ); typedef int Cancel_function( void *, bool ); Grequest Start( Query_function *query_fn, Free_function *free_fn, Cancel_function *cancel_fn, void *extra_state ); }; class Win { protected: MPI_Win the_real_win; public: inline Win(MPI_Win obj) : the_real_win(obj) {} inline Win(void) : the_real_win(((MPI_Win)0x20000000)) {} virtual ~Win() {} Win(const Win &obj) : the_real_win(obj.the_real_win){} Win& operator=(const Win &obj) { the_real_win = obj.the_real_win; return *this; } bool operator== (const Win &obj) { return (the_real_win == obj.the_real_win); } bool operator!= (const Win &obj) { return (the_real_win != obj.the_real_win); } inline operator MPI_Win*() { return &the_real_win; } inline operator MPI_Win() const { return the_real_win; } Win& operator=(const MPI_Win& obj) { the_real_win = obj; return *this; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_Win_get_group( (MPI_Win) the_real_win, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Fence( int v1 ) const { { int err = MPI_Win_fence( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Start( const Group &v1, int v2 ) const { { int err = MPI_Win_start( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Free( void ) { { int err = MPI_Win_free( (MPI_Win *) &the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Put( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Put( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Wait( void ) const { { int err = MPI_Win_wait( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Test( void ) const { int v2; { int err = MPI_Win_test( (MPI_Win) the_real_win, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } virtual void Get( void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7 ) const { { int err = MPI_Get( v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_attr( int v2, void * v3 ) const { int v4; { int err = MPI_Win_get_attr( (MPI_Win) the_real_win, v2, v3, &v4 ); if (err) { (this)->Call_errhandler( err ); }}; return v4!= 0; } virtual void Set_attr( int v2, const void * v3 ) { { int err = MPI_Win_set_attr( (MPI_Win) the_real_win, v2, (void *)v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Complete( void ) const { { int err = MPI_Win_complete( (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_Win_set_errhandler( (MPI_Win) the_real_win, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_name( const char * v2 ) { { int err = MPI_Win_set_name( (MPI_Win) the_real_win, (char *)v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Accumulate( const void * v1, int v2, const Datatype &v3, int v4, Aint v5, int v6, const Datatype &v7, const Op &v8 ) const { { int err = MPI_Accumulate( (void *)v1, v2, (MPI_Datatype)(v3 . the_real_datatype), v4, v5, v6, (MPI_Datatype)(v7 . the_real_datatype), (MPI_Op)(v8 . the_real_op), (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } static Win Create( const void * v1, Aint v2, int v3, const Info &v4, const Intracomm &v5 ) { Win v6; { int err = MPI_Win_create( (void *)v1, v2, v3, (MPI_Info)(v4 . the_real_info), (MPI_Comm)(v5 . the_real_comm), &(v6 . the_real_win) ); if (err) { (v5). Call_errhandler( err ); }}; return v6; } virtual void Call_errhandler( int v2 ) const; static void Free_keyval( int &v1 ) { { int err = MPI_Win_free_keyval( &v1 ) ; if (err) MPIR_Call_world_errhand( err ); }; } virtual void Post( const Group &v1, int v2 ) const { { int err = MPI_Win_post( (MPI_Group)(v1 . the_real_group), v2, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Unlock( int v1 ) const { { int err = MPI_Win_unlock( v1, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Delete_attr( int v2 ) { { int err = MPI_Win_delete_attr( (MPI_Win) the_real_win, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Lock( int v1, int v2, int v3 ) const { { int err = MPI_Win_lock( v1, v2, v3, (MPI_Win) the_real_win ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_Win_get_errhandler( (MPI_Win) the_real_win, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_name( char * v2, int &v3 ) const { { int err = MPI_Win_get_name( (MPI_Win) the_real_win, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; } typedef void Errhandler_function(Win &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); typedef int Copy_attr_function(const Win& oldwin, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, bool& flag); typedef int Delete_attr_function(Win& win, int win_keyval, void* attribute_val, void* extra_state); static int Create_keyval( Copy_attr_function *, Delete_attr_function *, void * ); static int NULL_COPY_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in __attribute__((unused)), void *attr_out __attribute__((unused)), bool &flag ) { flag = 1; return 0;} static int NULL_DELETE_FN( Win &win __attribute__((unused)), int keyval __attribute__((unused)), void * attr __attribute__((unused)), void *ex __attribute__((unused)) ) { return 0; } static int DUP_FN( const Win &oldwin __attribute__((unused)), int keyval __attribute__((unused)), void *ex __attribute__((unused)), void *attr_in, void *attr_out, bool &flag ) { flag = 1; *(void **)attr_out = attr_in; return 0;} }; class File { protected: MPI_File the_real_file; public: inline File(MPI_File obj) : the_real_file(obj) {} inline File(void) : the_real_file(((MPI_File)0)) {} virtual ~File() {} File(const File &obj) : the_real_file(obj.the_real_file){} File& operator=(const File &obj) { the_real_file = obj.the_real_file; return *this; } bool operator== (const File &obj) { return (the_real_file == obj.the_real_file); } bool operator!= (const File &obj) { return (the_real_file != obj.the_real_file); } inline operator MPI_File*() { return &the_real_file; } inline operator MPI_File() const { return the_real_file; } File& operator=(const MPI_File& obj) { the_real_file = obj; return *this; } virtual Aint Get_type_extent( const Datatype &v2 ) const { MPI_Aint v3; { int err = MPI_File_get_type_extent( (MPI_File) the_real_file, (MPI_Datatype)(v2 . the_real_datatype), &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual void Read_ordered_end( void * v2, Status & v3 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered_end( void * v2 ) { { int err = MPI_File_read_ordered_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Seek_shared( Offset v2, int v3 ) { { int err = MPI_File_seek_shared( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_ordered( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_shared( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Info Get_info( void ) const { Info v2; { int err = MPI_File_get_info( (MPI_File) the_real_file, &(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_ordered_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_info( const Info &v2 ) { { int err = MPI_File_set_info( (MPI_File) the_real_file, (MPI_Info)(v2 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_ordered( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Sync( void ) { { int err = MPI_File_sync( (MPI_File) the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_size( void ) const { MPI_Offset v2; { int err = MPI_File_get_size( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_all_end( const void * v2 ) { { int err = MPI_File_write_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } static void Delete( const char * v1, const Info &v2 ) { { int err = MPI_File_delete( (char *)v1, (MPI_Info)(v2 . the_real_info) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; } virtual void Read_ordered_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_ordered_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iread_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iread_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Write_at_all_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_end( const void * v2 ) { { int err = MPI_File_write_at_all_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_position_shared( void ) const { MPI_Offset v2; { int err = MPI_File_get_position_shared( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_shared( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { Request v6; { int err = MPI_File_iwrite_at( (MPI_File) the_real_file, (MPI_Offset)v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Request *)&(v6 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v6; } virtual void Get_view( Offset & v2, Datatype &v3, Datatype &v4, char * v5 ) const { { int err = MPI_File_get_view( (MPI_File) the_real_file, &v2, (MPI_Datatype *)&(v3 . the_real_datatype), (MPI_Datatype *)&(v4 . the_real_datatype), v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Call_errhandler( int v2 ) const; virtual void Write_all_begin( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write_all_begin( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_end( void * v2 ) { { int err = MPI_File_read_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Offset Get_byte_offset( const Offset v2 ) const { MPI_Offset v3; { int err = MPI_File_get_byte_offset( (MPI_File) the_real_file, (MPI_Offset)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual Request Iread( void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iread( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Read_at_all_end( void * v2, Status & v3 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_end( void * v2 ) { { int err = MPI_File_read_at_all_end( (MPI_File) the_real_file, v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all_begin( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all_begin( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Errhandler Get_errhandler( void ) const { Errhandler v2; { int err = MPI_File_get_errhandler( (MPI_File) the_real_file, &(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual int Get_amode( void ) const { int v2; { int err = MPI_File_get_amode( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Set_atomicity( bool v2 ) { int l2; l2 = (v2 == true) ? 1 : 0; { int err = MPI_File_set_atomicity( (MPI_File) the_real_file, l2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Group Get_group( void ) const { Group v2; { int err = MPI_File_get_group( (MPI_File) the_real_file, &(v2 . the_real_group) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual Offset Get_position( void ) const { MPI_Offset v2; { int err = MPI_File_get_position( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } static File Open( const Intracomm &v1, const char * v2, int v3, const Info &v4 ) { File v5; { int err = MPI_File_open( (MPI_Comm)(v1 . the_real_comm), (char *)v2, v3, (MPI_Info)(v4 . the_real_info), &(v5 . the_real_file) ); if (err) { (FILE_NULL). Call_errhandler( err ); }}; return v5; } virtual void Seek( Offset v2, int v3 ) { { int err = MPI_File_seek( (MPI_File) the_real_file, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all_begin( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all_begin( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all_begin( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all_begin( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_all( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_all( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Preallocate( Offset v2 ) { { int err = MPI_File_preallocate( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at_all( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at_all( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_shared( void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_read_shared( (MPI_File) the_real_file, v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual Request Iwrite( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual Request Iwrite_shared( const void * v2, int v3, const Datatype &v4 ) { Request v5; { int err = MPI_File_iwrite_shared( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Request *)&(v5 . the_real_request) ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Set_errhandler( const Errhandler &v2 ) { { int err = MPI_File_set_errhandler( (MPI_File) the_real_file, (MPI_Errhandler)(v2 . the_real_errhandler) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_at_all( Offset v2, const void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_write_at_all( (MPI_File) the_real_file, v2, (void *)v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_size( Offset v2 ) { { int err = MPI_File_set_size( (MPI_File) the_real_file, v2 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Set_view( Offset v2, const Datatype &v3, const Datatype v4, const char * v5, const Info &v6 ) { { int err = MPI_File_set_view( (MPI_File) the_real_file, v2, (MPI_Datatype)(v3 . the_real_datatype), (MPI_Datatype)v4, (char *)v5, (MPI_Info)(v6 . the_real_info) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5, Status & v6 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)&(v6 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Read_at( Offset v2, void * v3, int v4, const Datatype &v5 ) { { int err = MPI_File_read_at( (MPI_File) the_real_file, v2, v3, v4, (MPI_Datatype)(v5 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Close( void ) { { int err = MPI_File_close( (MPI_File *) &the_real_file ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2, Status & v3 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)&(v3 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write_ordered_end( const void * v2 ) { { int err = MPI_File_write_ordered_end( (MPI_File) the_real_file, (void *)v2, (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4, Status & v5 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)&(v5 . the_real_status ) ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Write( const void * v2, int v3, const Datatype &v4 ) { { int err = MPI_File_write( (MPI_File) the_real_file, (void *)v2, v3, (MPI_Datatype)(v4 . the_real_datatype), (MPI_Status *)1 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual bool Get_atomicity( void ) const { int v2; { int err = MPI_File_get_atomicity( (MPI_File) the_real_file, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2!= 0; } typedef void Errhandler_function(File &, int *, ... ); typedef Errhandler_function Errhandler_fn; static Errhandler Create_errhandler( Errhandler_function * ); }; class Graphcomm : public Intracomm { public: inline Graphcomm(MPI_Comm obj) : Intracomm(obj) {} inline Graphcomm(void) : Intracomm() {} virtual ~Graphcomm() {} Graphcomm(const Graphcomm &obj) : Intracomm(obj) {} Graphcomm& operator=(const Graphcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Graphcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_dims( int * v2, int * v3 ) const { { int err = MPI_Graphdims_get( (MPI_Comm) the_real_comm, v2, v3 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual void Get_topo( int v2, int v3, int * v4, int * v5 ) const { { int err = MPI_Graph_get( (MPI_Comm) the_real_comm, v2, v3, v4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Map( int v2, const int * v3, const int * v4 ) const { int v5; { int err = MPI_Graph_map( (MPI_Comm) the_real_comm, v2, (int *)v3, (int *)v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; return v5; } virtual void Get_neighbors( int v2, int v3, int * v4 ) const { { int err = MPI_Graph_neighbors( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_neighbors_count( int v2 ) const { int v3; { int err = MPI_Graph_neighbors_count( (MPI_Comm) the_real_comm, v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } Graphcomm Dup( void ) const { Graphcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2360 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Graphcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Graphcomm *clone = new Graphcomm(ncomm); return *clone; }; }; class Cartcomm : public Intracomm { public: inline Cartcomm(MPI_Comm obj) : Intracomm(obj) {} inline Cartcomm(void) : Intracomm() {} virtual ~Cartcomm() {} Cartcomm(const Cartcomm &obj) : Intracomm(obj) {} Cartcomm& operator=(const Cartcomm &obj) { the_real_comm = obj.the_real_comm; return *this; } inline operator MPI_Comm*() { return &the_real_comm; } inline operator MPI_Comm() const { return the_real_comm; } Cartcomm& operator=(const MPI_Comm& obj) { the_real_comm = obj; return *this; } virtual void Get_coords( int v2, int v3, int * v4 ) const { { int err = MPI_Cart_coords( (MPI_Comm) the_real_comm, v2, v3, v4 ); if (err) { (this)->Call_errhandler( err ); }}; } virtual int Get_cart_rank( const int * v2 ) const { int v3; { int err = MPI_Cart_rank( (MPI_Comm) the_real_comm, (int *)v2, &v3 ); if (err) { (this)->Call_errhandler( err ); }}; return v3; } virtual int Get_dim( void ) const { int v2; { int err = MPI_Cartdim_get( (MPI_Comm) the_real_comm, &v2 ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } virtual void Get_topo( int v2, int * v3, bool v4[], int * v5 ) const { int *l4 = new int[v2]; { int err = MPI_Cart_get( (MPI_Comm) the_real_comm, v2, v3, l4, v5 ); if (err) { (this)->Call_errhandler( err ); }}; { int i4; for (i4=0;i4Call_errhandler( err ); }}; delete[] l4; return v5; } virtual Cartcomm Sub( const bool v2[] ) const { Cartcomm v3; int *l2 = new int[10]; { int i2; for (i2=0;i2<10;i2++) { l2[i2] = v2[i2] == true ? 1 : 0; } } { int err = MPI_Cart_sub( (MPI_Comm) the_real_comm, l2, &(v3 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; delete[] l2; return v3; } virtual void Shift( int v2, int v3, int &v4, int &v5 ) const { { int err = MPI_Cart_shift( (MPI_Comm) the_real_comm, v2, v3, &v4, &v5 ); if (err) { (this)->Call_errhandler( err ); }}; } Cartcomm Dup( void ) const { Cartcomm v2; { int err = MPI_Comm_dup( (MPI_Comm) the_real_comm, &(v2 . the_real_comm) ); if (err) { (this)->Call_errhandler( err ); }}; return v2; } # 2475 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpicxx.h" virtual Cartcomm & Clone(void) const { MPI_Comm ncomm; MPI_Comm_dup( (MPI_Comm)the_real_comm, &ncomm); Cartcomm *clone = new Cartcomm(ncomm); return *clone; }; }; extern int Add_error_class( void ) ; extern void* Alloc_mem( Aint v1, const Info &v2 ) ; extern void Lookup_name( const char * v1, const Info &v2, char * v3 ) ; extern void Publish_name( const char * v1, const Info &v2, const char * v3 ) ; extern void Unpublish_name( const char * v1, const Info &v2, const char * v3 ) ; extern Aint Get_address( void * v1 ) ; extern void Add_error_string( int v1, const char * v2 ) ; extern int Query_thread( void ) ; extern void Close_port( const char * v1 ) ; extern int Add_error_code( int v1 ) ; extern void Free_mem( void * v1 ) ; extern void Open_port( const Info &v1, char * v2 ) ; extern bool Is_finalized( void ) ; extern bool Is_thread_main( void ) ; typedef int Datarep_extent_function( const Datatype&, Aint&, void *); typedef int Datarep_conversion_function( void *, Datatype &, int, void *, Offset, void * ); extern Datatype CHAR; extern Datatype UNSIGNED_CHAR; extern Datatype BYTE; extern Datatype SHORT; extern Datatype UNSIGNED_SHORT; extern Datatype INT; extern Datatype UNSIGNED; extern Datatype LONG; extern Datatype UNSIGNED_LONG; extern Datatype FLOAT; extern Datatype DOUBLE; extern Datatype LONG_DOUBLE; extern Datatype LONG_LONG_INT; extern Datatype LONG_LONG; extern Datatype PACKED; extern Datatype LB; extern Datatype UB; extern Datatype FLOAT_INT; extern Datatype DOUBLE_INT; extern Datatype LONG_INT; extern Datatype SHORT_INT; extern Datatype LONG_DOUBLE_INT; extern Datatype REAL4; extern Datatype REAL8; extern Datatype REAL16; extern Datatype COMPLEX8; extern Datatype COMPLEX16; extern Datatype COMPLEX32; extern Datatype INTEGER1; extern Datatype INTEGER2; extern Datatype INTEGER4; extern Datatype INTEGER8; extern Datatype INTEGER16; extern Datatype WCHAR; extern Datatype SIGNED_CHAR; extern Datatype UNSIGNED_LONG_LONG; extern Datatype TWOINT; extern Datatype BOOL; extern Datatype COMPLEX; extern Datatype DOUBLE_COMPLEX; extern Datatype LONG_DOUBLE_COMPLEX; extern Datatype DATATYPE_NULL; extern Datatype INTEGER; extern Datatype REAL; extern Datatype DOUBLE_PRECISION; extern Datatype F_COMPLEX; extern Datatype F_DOUBLE_COMPLEX; extern Datatype LOGICAL; extern Datatype CHARACTER; extern Datatype TWOREAL; extern Datatype TWODOUBLE_PRECISION; extern Datatype TWOINTEGER; extern const Op MAX; extern const Op MIN; extern const Op SUM; extern const Op PROD; extern const Op LAND; extern const Op BAND; extern const Op LOR; extern const Op BOR; extern const Op LXOR; extern const Op BXOR; extern const Op MINLOC; extern const Op MAXLOC; extern const Op REPLACE; extern const Op OP_NULL; extern Intracomm COMM_SELF; extern const Group GROUP_EMPTY; extern const Nullcomm COMM_NULL; extern const Group GROUP_NULL; extern const Request REQUEST_NULL; extern const Errhandler ERRHANDLER_NULL; extern const Errhandler ERRORS_RETURN; extern const Errhandler ERRORS_ARE_FATAL; extern const Errhandler ERRORS_THROW_EXCEPTIONS; extern const Info INFO_NULL; extern const Win WIN_NULL; extern const int BSEND_OVERHEAD; extern const int KEYVAL_INVALID; extern const int CART; extern const int GRAPH; extern const int IDENT; extern const int SIMILAR; extern const int CONGRUENT; extern const int UNEQUAL; extern const int PROC_NULL; extern const int ANY_TAG; extern const int ANY_SOURCE; extern const int ROOT; extern const int TAG_UB; extern const int IO; extern const int HOST; extern const int WTIME_IS_GLOBAL; extern const int UNIVERSE_SIZE; extern const int LASTUSEDCODE; extern const int APPNUM; extern const int MAX_PROCESSOR_NAME; extern const int MAX_ERROR_STRING; extern const int MAX_PORT_NAME; extern const int MAX_OBJECT_NAME; extern const int MAX_INFO_VAL; extern const int MAX_INFO_KEY; extern const int UNDEFINED; extern const int LOCK_EXCLUSIVE; extern const int LOCK_SHARED; extern const int WIN_BASE; extern const int WIN_DISP_UNIT; extern const int WIN_SIZE; extern const int SUCCESS; extern const int ERR_BUFFER; extern const int ERR_COUNT; extern const int ERR_TYPE; extern const int ERR_TAG; extern const int ERR_COMM; extern const int ERR_RANK; extern const int ERR_REQUEST; extern const int ERR_ROOT; extern const int ERR_GROUP; extern const int ERR_OP; extern const int ERR_TOPOLOGY; extern const int ERR_DIMS; extern const int ERR_ARG; extern const int ERR_UNKNOWN; extern const int ERR_TRUNCATE; extern const int ERR_OTHER; extern const int ERR_INTERN; extern const int ERR_PENDING; extern const int ERR_IN_STATUS; extern const int ERR_LASTCODE; extern const int ERR_FILE; extern const int ERR_ACCESS; extern const int ERR_AMODE; extern const int ERR_BAD_FILE; extern const int ERR_FILE_EXISTS; extern const int ERR_FILE_IN_USE; extern const int ERR_NO_SPACE; extern const int ERR_NO_SUCH_FILE; extern const int ERR_IO; extern const int ERR_READ_ONLY; extern const int ERR_CONVERSION; extern const int ERR_DUP_DATAREP; extern const int ERR_UNSUPPORTED_DATAREP; extern const int ERR_INFO; extern const int ERR_INFO_KEY; extern const int ERR_INFO_VALUE; extern const int ERR_INFO_NOKEY; extern const int ERR_NAME; extern const int ERR_NO_MEM; extern const int ERR_NOT_SAME; extern const int ERR_PORT; extern const int ERR_QUOTA; extern const int ERR_SERVICE; extern const int ERR_SPAWN; extern const int ERR_UNSUPPORTED_OPERATION; extern const int ERR_WIN; extern const int ERR_BASE; extern const int ERR_LOCKTYPE; extern const int ERR_KEYVAL; extern const int ERR_RMA_CONFLICT; extern const int ERR_RMA_SYNC; extern const int ERR_SIZE; extern const int ERR_DISP; extern const int ERR_ASSERT; extern const int TYPECLASS_REAL; extern const int TYPECLASS_INTEGER; extern const int TYPECLASS_COMPLEX; extern const int SEEK_SET; extern const int SEEK_END; extern const int SEEK_CUR; extern const int DISTRIBUTE_BLOCK; extern const int DISTRIBUTE_CYCLIC; extern const int DISTRIBUTE_DFLT_DARG; extern const int DISTRIBUTE_NONE; extern const int ORDER_C; extern const int ORDER_FORTRAN; extern const int MAX_DATAREP_STRING; extern const MPI_Offset DISPLACEMENT_CURRENT; extern const int MODE_APPEND; extern const int MODE_CREATE; extern const int MODE_DELETE_ON_CLOSE; extern const int MODE_EXCL; extern const int MODE_RDONLY; extern const int MODE_RDWR; extern const int MODE_SEQUENTIAL; extern const int MODE_UNIQUE_OPEN; extern const int MODE_WRONLY; extern const int MODE_NOCHECK; extern const int MODE_NOPRECEDE; extern const int MODE_NOPUT; extern const int MODE_NOSTORE; extern const int MODE_NOSUCCEED; extern const int COMM_TYPE_SHARED; extern const int COMBINER_CONTIGUOUS; extern const int COMBINER_DARRAY; extern const int COMBINER_DUP; extern const int COMBINER_F90_COMPLEX; extern const int COMBINER_F90_INTEGER; extern const int COMBINER_F90_REAL; extern const int COMBINER_HINDEXED_INTEGER; extern const int COMBINER_HINDEXED; extern const int COMBINER_HVECTOR_INTEGER; extern const int COMBINER_HVECTOR; extern const int COMBINER_INDEXED_BLOCK; extern const int COMBINER_INDEXED; extern const int COMBINER_NAMED; extern const int COMBINER_RESIZED; extern const int COMBINER_STRUCT_INTEGER; extern const int COMBINER_STRUCT; extern const int COMBINER_SUBARRAY; extern const int COMBINER_VECTOR; extern const int COMBINER_HINDEXED_BLOCK; extern const int THREAD_FUNNELED; extern const int THREAD_MULTIPLE; extern const int THREAD_SERIALIZED; extern const int THREAD_SINGLE; extern const char ** const ARGV_NULL; extern const char *** const ARGVS_NULL; extern void * const BOTTOM; extern void * const IN_PLACE; extern void Init(void); extern void Init(int &, char **& ); extern int Init_thread(int); extern int Init_thread(int &, char **&, int ); extern double Wtime(void); extern double Wtick(void); } # 1708 "/opt/ibmhpc/pecurrent/mpich2/intel/include64/mpi.h" 2 typedef int (MPIX_Grequest_poll_function)(void *, MPI_Status *); typedef int (MPIX_Grequest_wait_function)(int, void **, double, MPI_Status *); typedef int MPIX_Grequest_class; int MPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int MPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int MPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); int PMPIX_Grequest_class_create(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, MPIX_Grequest_class *); int PMPIX_Grequest_class_allocate(MPIX_Grequest_class, void *, MPI_Request *); int PMPIX_Grequest_start(MPI_Grequest_query_function *, MPI_Grequest_free_function *, MPI_Grequest_cancel_function *, MPIX_Grequest_poll_function *, MPIX_Grequest_wait_function *, void *, MPI_Request *); # 18 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h" 2 # 1 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" 1 # 76 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" # 1 "/usr/include/inttypes.h" 1 3 # 1 "/usr/include/stdint.h" 1 3 # 1 "/usr/include/bits/wchar.h" 1 3 # 28 "/usr/include/stdint.h" 2 3 # 1 "/usr/include/bits/wordsize.h" 1 3 # 29 "/usr/include/stdint.h" 2 3 typedef signed char int8_t; typedef short int int16_t; typedef int int32_t; typedef long int int64_t; typedef unsigned char uint8_t; typedef unsigned short int uint16_t; typedef unsigned int uint32_t; typedef unsigned long int uint64_t; typedef signed char int_least8_t; typedef short int int_least16_t; typedef int int_least32_t; typedef long int int_least64_t; typedef unsigned char uint_least8_t; typedef unsigned short int uint_least16_t; typedef unsigned int uint_least32_t; typedef unsigned long int uint_least64_t; typedef signed char int_fast8_t; typedef long int int_fast16_t; typedef long int int_fast32_t; typedef long int int_fast64_t; # 102 "/usr/include/stdint.h" 3 typedef unsigned char uint_fast8_t; typedef unsigned long int uint_fast16_t; typedef unsigned long int uint_fast32_t; typedef unsigned long int uint_fast64_t; # 115 "/usr/include/stdint.h" 3 typedef long int intptr_t; typedef unsigned long int uintptr_t; # 131 "/usr/include/stdint.h" 3 typedef long int intmax_t; typedef unsigned long int uintmax_t; # 143 "/usr/include/stdint.h" 3 # 283 "/usr/include/stdint.h" 3 # 319 "/usr/include/stdint.h" 3 # 29 "/usr/include/inttypes.h" 2 3 # 43 "/usr/include/inttypes.h" 3 # 272 "/usr/include/inttypes.h" 3 extern "C" { typedef struct { long int quot; long int rem; } imaxdiv_t; # 295 "/usr/include/inttypes.h" 3 extern intmax_t imaxabs (intmax_t __n) throw () __attribute__ ((__const__)); extern imaxdiv_t imaxdiv (intmax_t __numer, intmax_t __denom) throw () __attribute__ ((__const__)); extern intmax_t strtoimax (__const char *__restrict __nptr, char **__restrict __endptr, int __base) throw (); extern uintmax_t strtoumax (__const char *__restrict __nptr, char ** __restrict __endptr, int __base) throw (); extern intmax_t wcstoimax (__const wchar_t *__restrict __nptr, wchar_t **__restrict __endptr, int __base) throw (); extern uintmax_t wcstoumax (__const wchar_t *__restrict __nptr, wchar_t ** __restrict __endptr, int __base) throw (); # 441 "/usr/include/inttypes.h" 3 } # 95 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" 2 # 114 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" typedef int64_t idx_t; # 131 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" # 151 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" typedef double real_t; # 192 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/metis.h" extern "C" { int METIS_PartGraphRecursive(idx_t *nvtxs, idx_t *ncon, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *vsize, idx_t *adjwgt, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part); int METIS_PartGraphKway(idx_t *nvtxs, idx_t *ncon, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *vsize, idx_t *adjwgt, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part); int METIS_MeshToDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *ncommon, idx_t *numflag, idx_t **r_xadj, idx_t **r_adjncy); int METIS_MeshToNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *numflag, idx_t **r_xadj, idx_t **r_adjncy); int METIS_PartMeshNodal(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *vwgt, idx_t *vsize, idx_t *nparts, real_t *tpwgts, idx_t *options, idx_t *objval, idx_t *epart, idx_t *npart); int METIS_PartMeshDual(idx_t *ne, idx_t *nn, idx_t *eptr, idx_t *eind, idx_t *vwgt, idx_t *vsize, idx_t *ncommon, idx_t *nparts, real_t *tpwgts, idx_t *options, idx_t *objval, idx_t *epart, idx_t *npart); int METIS_NodeND(idx_t *nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *options, idx_t *perm, idx_t *iperm); int METIS_Free(void *ptr); int METIS_SetDefaultOptions(idx_t *options); int METIS_NodeNDP(idx_t nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t npes, idx_t *options, idx_t *perm, idx_t *iperm, idx_t *sizes); int METIS_ComputeVertexSeparator(idx_t *nvtxs, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *options, idx_t *sepsize, idx_t *part); int METIS_NodeRefine(idx_t nvtxs, idx_t *xadj, idx_t *vwgt, idx_t *adjncy, idx_t *where, idx_t *hmarker, real_t ubfactor); } typedef enum { METIS_OK = 1, METIS_ERROR_INPUT = -2, METIS_ERROR_MEMORY = -3, METIS_ERROR = -4 } rstatus_et; typedef enum { METIS_OP_PMETIS, METIS_OP_KMETIS, METIS_OP_OMETIS } moptype_et; typedef enum { METIS_OPTION_PTYPE, METIS_OPTION_OBJTYPE, METIS_OPTION_CTYPE, METIS_OPTION_IPTYPE, METIS_OPTION_RTYPE, METIS_OPTION_DBGLVL, METIS_OPTION_NITER, METIS_OPTION_NCUTS, METIS_OPTION_SEED, METIS_OPTION_NO2HOP, METIS_OPTION_MINCONN, METIS_OPTION_CONTIG, METIS_OPTION_COMPRESS, METIS_OPTION_CCORDER, METIS_OPTION_PFACTOR, METIS_OPTION_NSEPS, METIS_OPTION_UFACTOR, METIS_OPTION_NUMBERING, METIS_OPTION_HELP, METIS_OPTION_TPWGTS, METIS_OPTION_NCOMMON, METIS_OPTION_NOOUTPUT, METIS_OPTION_BALANCE, METIS_OPTION_GTYPE, METIS_OPTION_UBVEC } moptions_et; typedef enum { METIS_PTYPE_RB, METIS_PTYPE_KWAY } mptype_et; typedef enum { METIS_GTYPE_DUAL, METIS_GTYPE_NODAL } mgtype_et; typedef enum { METIS_CTYPE_RM, METIS_CTYPE_SHEM } mctype_et; typedef enum { METIS_IPTYPE_GROW, METIS_IPTYPE_RANDOM, METIS_IPTYPE_EDGE, METIS_IPTYPE_NODE, METIS_IPTYPE_METISRB } miptype_et; typedef enum { METIS_RTYPE_FM, METIS_RTYPE_GREEDY, METIS_RTYPE_SEP2SIDED, METIS_RTYPE_SEP1SIDED } mrtype_et; typedef enum { METIS_DBG_INFO = 1, METIS_DBG_TIME = 2, METIS_DBG_COARSEN = 4, METIS_DBG_REFINE = 8, METIS_DBG_IPART = 16, METIS_DBG_MOVEINFO = 32, METIS_DBG_SEPINFO = 64, METIS_DBG_CONNINFO = 128, METIS_DBG_CONTIGINFO = 256, METIS_DBG_MEMORY = 2048, } mdbglvl_et; typedef enum { METIS_OBJTYPE_CUT, METIS_OBJTYPE_VOL, METIS_OBJTYPE_NODE } mobjtype_et; # 19 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h" 2 # 46 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h" extern "C" { int ParMETIS_V3_PartKway( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *adjwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ncon, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_PartGeomKway( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *adjwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ndims, real_t *xyz, idx_t *ncon, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_PartGeom( idx_t *vtxdist, idx_t *ndims, real_t *xyz, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_RefineKway( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *adjwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ncon, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_AdaptiveRepart( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *vsize, idx_t *adjwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ncon, idx_t *nparts, real_t *tpwgts, real_t *ubvec, real_t *ipc2redist, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_Mesh2Dual( idx_t *elmdist, idx_t *eptr, idx_t *eind, idx_t *numflag, idx_t *ncommonnodes, idx_t **xadj, idx_t **adjncy, MPI_Comm *comm); int ParMETIS_V3_PartMeshKway( idx_t *elmdist, idx_t *eptr, idx_t *eind, idx_t *elmwgt, idx_t *wgtflag, idx_t *numflag, idx_t *ncon, idx_t *ncommonnodes, idx_t *nparts, real_t *tpwgts, real_t *ubvec, idx_t *options, idx_t *edgecut, idx_t *part, MPI_Comm *comm); int ParMETIS_V3_NodeND( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *numflag, idx_t *options, idx_t *order, idx_t *sizes, MPI_Comm *comm); int ParMETIS_V32_NodeND( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *vwgt, idx_t *numflag, idx_t *mtype, idx_t *rtype, idx_t *p_nseps, idx_t *s_nseps, real_t *ubfrac, idx_t *seed, idx_t *dbglvl, idx_t *order, idx_t *sizes, MPI_Comm *comm); int ParMETIS_SerialNodeND( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *numflag, idx_t *options, idx_t *order, idx_t *sizes, MPI_Comm *comm); void ParMETIS_ComputeVertexSeparator( idx_t *vtxdist, idx_t *xadj, idx_t *adjncy, idx_t *p_nseps, idx_t *s_nseps, real_t *ubfrac, idx_t *idbglvl, idx_t *order, idx_t *sizes, MPI_Comm *comm); } typedef enum { PARMETIS_OP_KMETIS, PARMETIS_OP_GKMETIS, PARMETIS_OP_GMETIS, PARMETIS_OP_RMETIS, PARMETIS_OP_AMETIS, PARMETIS_OP_OMETIS, PARMETIS_OP_M2DUAL, PARMETIS_OP_MKMETIS } pmoptype_et; # 170 "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include/parmetis.h" # 4 "/glade/scratch/fandek/petsc-aqKo9_/config.headers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['parmetis.h'] in ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] Popping language Cxx ================================================================================ TEST checkSharedLibrary from config.packages.parmetis(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.parmetis(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.Zoltan(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Zoltan(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default Pushing language Cxx ================================================================================ TEST configureLibrary from config.packages.fblaslapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:572) TESTING: configureLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:572) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional fblaslapack Looking for FBLASLAPACK in directory starting with fblaslapack Could not locate an existing copy of fblaslapack: ['sowing', 'exodus-5.24', 'metis-5.1.0-p1', 'parmetis-4.0.3-p2'] Downloading fblaslapack =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fblaslapack-3.4.2.tar.gz for FBLASLAPACK =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/fblaslapack-3.4.2.tar.gz to /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_fblaslapack-3.4.2.tar.gz Extracting /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/_d_fblaslapack-3.4.2.tar.gz Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages; chmod -R a+r fblaslapack-3.4.2;find fblaslapack-3.4.2 -type d -name "*" -exec chmod a+rx {} \; Looking for FBLASLAPACK in directory starting with fblaslapack Found a copy of FBLASLAPACK in fblaslapack-3.4.2 Looking for FBLASLAPACK in directory starting with fblaslapack Found a copy of FBLASLAPACK in fblaslapack-3.4.2 Pushing language FC Executing: mpif90 -V Popping language FC Pushing language FC Executing: mpif90 -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -fPIC -g -O0 /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC Pushing language FC Popping language FC Have to rebuild fblaslapack, /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/tmpmakefile != /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/fblaslapack =============================================================================== Compiling FBLASLAPACK; this may take several minutes =============================================================================== Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2 && make -f tmpmakefile cleanblaslapck cleanlib && make -f tmpmakefile stdout: /bin/rm -f */*.o /bin/rm -f ./*.a ./*.lib cd blas; make lib FC="mpif90" FOPTFLAGS="-fPIC -g " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libfblas.a" make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/blas' mpif90 -c -fPIC -g caxpy.f ccopy.f cdotc.f cdotu.f cgbmv.f cgemm.f cgemv.f cgerc.f cgeru.f chbmv.f chemm.f chemv.f cher2.f cher2k.f cher.f cherk.f chpmv.f chpr2.f chpr.f crotg.f cscal.f csrot.f csscal.f cswap.f csymm.f csyr2k.f csyrk.f ctbmv.f ctbsv.f ctpmv.f ctpsv.f ctrmm.f ctrmv.f ctrsm.f ctrsv.f dasum.f daxpy.f dcabs1.f dcopy.f ddot.f dgbmv.f dgemm.f dgemv.f dger.f dnrm2.f drot.f drotg.f drotm.f drotmg.f dsbmv.f dscal.f dsdot.f dspmv.f dspr2.f dspr.f dswap.f dsymm.f dsymv.f dsyr2.f dsyr2k.f dsyr.f dsyrk.f dtbmv.f dtbsv.f dtpmv.f dtpsv.f dtrmm.f dtrmv.f dtrsm.f dtrsv.f dzasum.f dznrm2.f icamax.f idamax.f isamax.f izamax.f lsame.f sasum.f saxpy.f scabs1.f scasum.f scnrm2.f scopy.f sdot.f sdsdot.f sgbmv.f sgemm.f sgemv.f sger.f snrm2.f srot.f srotg.f srotm.f srotmg.f ssbmv.f sscal.f sspmv.f sspr2.f sspr.f sswap.f ssymm.f ssymv.f ssyr2.f ssyr2k.f ssyr.f ssyrk.f stbmv.f stbsv.f stpmv.f stpsv.f strmm.f strmv.f strsm.f strsv.f xerbla_array.f xerbla.f zaxpy.f zcopy.f zdotc.f zdotu.f zdrot.f zdscal.f zgbmv.f zgemm.f zgemv.f zgerc.f zgeru.f zhbmv.f zhemm.f zhemv.f zher2.f zher2k.f zher.f zherk.f zhpmv.f zhpr2.f zhpr.f zrotg.f zscal.f zswap.f zsymm.f zsyr2k.f zsyrk.f ztbmv.f ztbsv.f ztpmv.f ztpsv.f ztrmm.f ztrmv.f ztrsm.f ztrsv.f /usr/bin/ar cr ../libfblas.a caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o /bin/rm -f caxpy.o ccopy.o cdotc.o cdotu.o cgbmv.o cgemm.o cgemv.o cgerc.o cgeru.o chbmv.o chemm.o chemv.o cher2.o cher2k.o cher.o cherk.o chpmv.o chpr2.o chpr.o crotg.o cscal.o csrot.o csscal.o cswap.o csymm.o csyr2k.o csyrk.o ctbmv.o ctbsv.o ctpmv.o ctpsv.o ctrmm.o ctrmv.o ctrsm.o ctrsv.o dasum.o daxpy.o dcabs1.o dcopy.o ddot.o dgbmv.o dgemm.o dgemv.o dger.o dnrm2.o drot.o drotg.o drotm.o drotmg.o dsbmv.o dscal.o dsdot.o dspmv.o dspr2.o dspr.o dswap.o dsymm.o dsymv.o dsyr2.o dsyr2k.o dsyr.o dsyrk.o dtbmv.o dtbsv.o dtpmv.o dtpsv.o dtrmm.o dtrmv.o dtrsm.o dtrsv.o dzasum.o dznrm2.o icamax.o idamax.o isamax.o izamax.o lsame.o sasum.o saxpy.o scabs1.o scasum.o scnrm2.o scopy.o sdot.o sdsdot.o sgbmv.o sgemm.o sgemv.o sger.o snrm2.o srot.o srotg.o srotm.o srotmg.o ssbmv.o sscal.o sspmv.o sspr2.o sspr.o sswap.o ssymm.o ssymv.o ssyr2.o ssyr2k.o ssyr.o ssyrk.o stbmv.o stbsv.o stpmv.o stpsv.o strmm.o strmv.o strsm.o strsv.o xerbla_array.o xerbla.o zaxpy.o zcopy.o zdotc.o zdotu.o zdrot.o zdscal.o zgbmv.o zgemm.o zgemv.o zgerc.o zgeru.o zhbmv.o zhemm.o zhemv.o zher2.o zher2k.o zher.o zherk.o zhpmv.o zhpr2.o zhpr.o zrotg.o zscal.o zswap.o zsymm.o zsyr2k.o zsyrk.o ztbmv.o ztbsv.o ztpmv.o ztpsv.o ztrmm.o ztrmv.o ztrsm.o ztrsv.o make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/blas' /usr/bin/ranlib libfblas.a cd lapack; make lib FC="mpif90" FOPTFLAGS="-fPIC -g " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libflapack.a" make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/lapack' mpif90 -c -O0 -fPIC slaruv.f dlaruv.f mpif90 -c -fPIC -g cbbcsd.f cbdsqr.f cgbbrd.f cgbcon.f cgbequb.f cgbequ.f cgbrfs.f cgbrfsx.f cgbsv.f cgbsvx.f cgbsvxx.f cgbtf2.f cgbtrf.f cgbtrs.f cgebak.f cgebal.f cgebd2.f cgebrd.f cgecon.f cgeequb.f cgeequ.f cgees.f cgeesx.f cgeev.f cgeevx.f cgegs.f cgegv.f cgehd2.f cgehrd.f cgelq2.f cgelqf.f cgelsd.f cgels.f cgelss.f cgelsx.f cgelsy.f cgemqrt.f cgeql2.f cgeqlf.f cgeqp3.f cgeqpf.f cgeqr2.f cgeqr2p.f cgeqrf.f cgeqrfp.f cgeqrt2.f cgeqrt3.f cgeqrt.f cgerfs.f cgerfsx.f cgerq2.f cgerqf.f cgesc2.f cgesdd.f cgesvd.f cgesv.f cgesvx.f cgesvxx.f cgetc2.f cgetf2.f cgetrf.f cgetri.f cgetrs.f cggbak.f cggbal.f cgges.f cggesx.f cggev.f cggevx.f cggglm.f cgghrd.f cgglse.f cggqrf.f cggrqf.f cggsvd.f cggsvp.f cgtcon.f cgtrfs.f cgtsv.f cgtsvx.f cgttrf.f cgttrs.f cgtts2.f chbevd.f chbev.f chbevx.f chbgst.f chbgvd.f chbgv.f chbgvx.f chbtrd.f checon.f checon_rook.f cheequb.f cheevd.f cheev.f cheevr.f cheevx.f chegs2.f chegst.f chegvd.f chegv.f chegvx.f cherfs.f cherfsx.f chesv.f chesv_rook.f chesvx.f chesvxx.f cheswapr.f chetd2.f chetf2.f chetf2_rook.f chetrd.f chetrf.f chetrf_rook.f chetri2.f chetri2x.f chetri.f chetri_rook.f chetrs2.f chetrs.f chetrs_rook.f chfrk.f chgeqz.f chla_transtype.f chpcon.f chpevd.f chpev.f chpevx.f chpgst.f chpgvd.f chpgv.f chpgvx.f chprfs.f chpsv.f chpsvx.f chptrd.f chptrf.f chptri.f chptrs.f chsein.f chseqr.f clabrd.f clacgv.f clacn2.f clacon.f clacp2.f clacpy.f clacrm.f clacrt.f cladiv.f claed0.f claed7.f claed8.f claein.f claesy.f claev2.f clag2z.f cla_gbamv.f cla_gbrcond_c.f cla_gbrcond_x.f cla_gbrfsx_extended.f cla_gbrpvgrw.f cla_geamv.f cla_gercond_c.f cla_gercond_x.f cla_gerfsx_extended.f cla_gerpvgrw.f clags2.f clagtm.f cla_heamv.f clahef.f clahef_rook.f cla_hercond_c.f cla_hercond_x.f cla_herfsx_extended.f cla_herpvgrw.f clahqr.f clahr2.f clahrd.f claic1.f cla_lin_berr.f clals0.f clalsa.f clalsd.f clangb.f clange.f clangt.f clanhb.f clanhe.f clanhf.f clanhp.f clanhs.f clanht.f clansb.f clansp.f clansy.f clantb.f clantp.f clantr.f clapll.f clapmr.f clapmt.f cla_porcond_c.f cla_porcond_x.f cla_porfsx_extended.f cla_porpvgrw.f claqgb.f claqge.f claqhb.f claqhe.f claqhp.f claqp2.f claqps.f claqr0.f claqr1.f claqr2.f claqr3.f claqr4.f claqr5.f claqsb.f claqsp.f claqsy.f clar1v.f clar2v.f clarcm.f clarfb.f clarf.f clarfg.f clarfgp.f clarft.f clarfx.f clargv.f clarnv.f clarrv.f clarscl2.f clartg.f clartv.f clarzb.f clarz.f clarzt.f clascl2.f clascl.f claset.f clasr.f classq.f claswp.f cla_syamv.f clasyf.f clasyf_rook.f cla_syrcond_c.f cla_syrcond_x.f cla_syrfsx_extended.f cla_syrpvgrw.f clatbs.f clatdf.f clatps.f clatrd.f clatrs.f clatrz.f clatzm.f clauu2.f clauum.f cla_wwaddw.f cpbcon.f cpbequ.f cpbrfs.f cpbstf.f cpbsv.f cpbsvx.f cpbtf2.f cpbtrf.f cpbtrs.f cpftrf.f cpftri.f cpftrs.f cpocon.f cpoequb.f cpoequ.f cporfs.f cporfsx.f cposv.f cposvx.f cposvxx.f cpotf2.f cpotrf.f cpotri.f cpotrs.f cppcon.f cppequ.f cpprfs.f cppsv.f cppsvx.f cpptrf.f cpptri.f cpptrs.f cpstf2.f cpstrf.f cptcon.f cpteqr.f cptrfs.f cptsv.f cptsvx.f cpttrf.f cpttrs.f cptts2.f crot.f cspcon.f cspmv.f cspr.f csprfs.f cspsv.f cspsvx.f csptrf.f csptri.f csptrs.f csrscl.f cstedc.f cstegr.f cstein.f cstemr.f csteqr.f csycon.f csycon_rook.f csyconv.f csyequb.f csymv.f csyr.f csyrfs.f csyrfsx.f csysv.f csysv_rook.f csysvx.f csysvxx.f csyswapr.f csytf2.f csytf2_rook.f csytrf.f csytrf_rook.f csytri2.f csytri2x.f csytri.f csytri_rook.f csytrs2.f csytrs.f csytrs_rook.f ctbcon.f ctbrfs.f ctbtrs.f ctfsm.f ctftri.f ctfttp.f ctfttr.f ctgevc.f ctgex2.f ctgexc.f ctgsen.f ctgsja.f ctgsna.f ctgsy2.f ctgsyl.f ctpcon.f ctpmqrt.f ctpqrt2.f ctpqrt.f ctprfb.f ctprfs.f ctptri.f ctptrs.f ctpttf.f ctpttr.f ctrcon.f ctrevc.f ctrexc.f ctrrfs.f ctrsen.f ctrsna.f ctrsyl.f ctrti2.f ctrtri.f ctrtrs.f ctrttf.f ctrttp.f ctzrqf.f ctzrzf.f cunbdb1.f cunbdb2.f cunbdb3.f cunbdb4.f cunbdb5.f cunbdb6.f cunbdb.f cuncsd2by1.f cuncsd.f cung2l.f cung2r.f cungbr.f cunghr.f cungl2.f cunglq.f cungql.f cungqr.f cungr2.f cungrq.f cungtr.f cunm2l.f cunm2r.f cunmbr.f cunmhr.f cunml2.f cunmlq.f cunmql.f cunmqr.f cunmr2.f cunmr3.f cunmrq.f cunmrz.f cunmtr.f cupgtr.f cupmtr.f dbbcsd.f dbdsdc.f dbdsqr.f ddisna.f dgbbrd.f dgbcon.f dgbequb.f dgbequ.f dgbrfs.f dgbrfsx.f dgbsv.f dgbsvx.f dgbsvxx.f dgbtf2.f dgbtrf.f dgbtrs.f dgebak.f dgebal.f dgebd2.f dgebrd.f dgecon.f dgeequb.f dgeequ.f dgees.f dgeesx.f dgeev.f dgeevx.f dgegs.f dgegv.f dgehd2.f dgehrd.f dgejsv.f dgelq2.f dgelqf.f dgelsd.f dgels.f dgelss.f dgelsx.f dgelsy.f dgemqrt.f dgeql2.f dgeqlf.f dgeqp3.f dgeqpf.f dgeqr2.f dgeqr2p.f dgeqrf.f dgeqrfp.f dgeqrt2.f dgeqrt3.f dgeqrt.f dgerfs.f dgerfsx.f dgerq2.f dgerqf.f dgesc2.f dgesdd.f dgesvd.f dgesv.f dgesvj.f dgesvx.f dgesvxx.f dgetc2.f dgetf2.f dgetrf.f dgetri.f dgetrs.f dggbak.f dggbal.f dgges.f dggesx.f dggev.f dggevx.f dggglm.f dgghrd.f dgglse.f dggqrf.f dggrqf.f dggsvd.f dggsvp.f dgsvj0.f dgsvj1.f dgtcon.f dgtrfs.f dgtsv.f dgtsvx.f dgttrf.f dgttrs.f dgtts2.f dhgeqz.f dhsein.f dhseqr.f disnan.f dlabad.f dlabrd.f dlacn2.f dlacon.f dlacpy.f dladiv.f dlae2.f dlaebz.f dlaed0.f dlaed1.f dlaed2.f dlaed3.f dlaed4.f dlaed5.f dlaed6.f dlaed7.f dlaed8.f dlaed9.f dlaeda.f dlaein.f dlaev2.f dlaexc.f dlag2.f dlag2s.f dla_gbamv.f dla_gbrcond.f dla_gbrfsx_extended.f dla_gbrpvgrw.f dla_geamv.f dla_gercond.f dla_gerfsx_extended.f dla_gerpvgrw.f dlags2.f dlagtf.f dlagtm.f dlagts.f dlagv2.f dlahqr.f dlahr2.f dlahrd.f dlaic1.f dlaisnan.f dla_lin_berr.f dlaln2.f dlals0.f dlalsa.f dlalsd.f dlamrg.f dlaneg.f dlangb.f dlange.f dlangt.f dlanhs.f dlansb.f dlansf.f dlansp.f dlanst.f dlansy.f dlantb.f dlantp.f dlantr.f dlanv2.f dlapll.f dlapmr.f dlapmt.f dla_porcond.f dla_porfsx_extended.f dla_porpvgrw.f dlapy2.f dlapy3.f dlaqgb.f dlaqge.f dlaqp2.f dlaqps.f dlaqr0.f dlaqr1.f dlaqr2.f dlaqr3.f dlaqr4.f dlaqr5.f dlaqsb.f dlaqsp.f dlaqsy.f dlaqtr.f dlar1v.f dlar2v.f dlarfb.f dlarf.f dlarfg.f dlarfgp.f dlarft.f dlarfx.f dlargv.f dlarnv.f dlarra.f dlarrb.f dlarrc.f dlarrd.f dlarre.f dlarrf.f dlarrj.f dlarrk.f dlarrr.f dlarrv.f dlarscl2.f dlartg.f dlartgp.f dlartgs.f dlartv.f dlaruv.f dlarzb.f dlarz.f dlarzt.f dlas2.f dlascl2.f dlascl.f dlasd0.f dlasd1.f dlasd2.f dlasd3.f dlasd4.f dlasd5.f dlasd6.f dlasd7.f dlasd8.f dlasda.f dlasdq.f dlasdt.f dlaset.f dlasq1.f dlasq2.f dlasq3.f dlasq4.f dlasq5.f dlasq6.f dlasr.f dlasrt.f dlassq.f dlasv2.f dlaswp.f dlasy2.f dla_syamv.f dlasyf.f dlasyf_rook.f dla_syrcond.f dla_syrfsx_extended.f dla_syrpvgrw.f dlat2s.f dlatbs.f dlatdf.f dlatps.f dlatrd.f dlatrs.f dlatrz.f dlatzm.f dlauu2.f dlauum.f dla_wwaddw.f dlazq3.f dlazq4.f dopgtr.f dopmtr.f dorbdb1.f dorbdb2.f dorbdb3.f dorbdb4.f dorbdb5.f dorbdb6.f dorbdb.f dorcsd2by1.f dorcsd.f dorg2l.f dorg2r.f dorgbr.f dorghr.f dorgl2.f dorglq.f dorgql.f dorgqr.f dorgr2.f dorgrq.f dorgtr.f dorm2l.f dorm2r.f dormbr.f dormhr.f dorml2.f dormlq.f dormql.f dormqr.f dormr2.f dormr3.f dormrq.f dormrz.f dormtr.f dpbcon.f dpbequ.f dpbrfs.f dpbstf.f dpbsv.f dpbsvx.f dpbtf2.f dpbtrf.f dpbtrs.f dpftrf.f dpftri.f dpftrs.f dpocon.f dpoequb.f dpoequ.f dporfs.f dporfsx.f dposv.f dposvx.f dposvxx.f dpotf2.f dpotrf.f dpotri.f dpotrs.f dppcon.f dppequ.f dpprfs.f dppsv.f dppsvx.f dpptrf.f dpptri.f dpptrs.f dpstf2.f dpstrf.f dptcon.f dpteqr.f dptrfs.f dptsv.f dptsvx.f dpttrf.f dpttrs.f dptts2.f drscl.f dsbevd.f dsbev.f dsbevx.f dsbgst.f dsbgvd.f dsbgv.f dsbgvx.f dsbtrd.f dsfrk.f dsgesv.f dspcon.f dspevd.f dspev.f dspevx.f dspgst.f dspgvd.f dspgv.f dspgvx.f dsposv.f dsprfs.f dspsv.f dspsvx.f dsptrd.f dsptrf.f dsptri.f dsptrs.f dstebz.f dstedc.f dstegr.f dstein.f dstemr.f dsteqr.f dsterf.f dstevd.f dstev.f dstevr.f dstevx.f dsycon.f dsycon_rook.f dsyconv.f dsyequb.f dsyevd.f dsyev.f dsyevr.f dsyevx.f dsygs2.f dsygst.f dsygvd.f dsygv.f dsygvx.f dsyrfs.f dsyrfsx.f dsysv.f dsysv_rook.f dsysvx.f dsysvxx.f dsyswapr.f dsytd2.f dsytf2.f dsytf2_rook.f dsytrd.f dsytrf.f dsytrf_rook.f dsytri2.f dsytri2x.f dsytri.f dsytri_rook.f dsytrs2.f dsytrs.f dsytrs_rook.f dtbcon.f dtbrfs.f dtbtrs.f dtfsm.f dtftri.f dtfttp.f dtfttr.f dtgevc.f dtgex2.f dtgexc.f dtgsen.f dtgsja.f dtgsna.f dtgsy2.f dtgsyl.f dtpcon.f dtpmqrt.f dtpqrt2.f dtpqrt.f dtprfb.f dtprfs.f dtptri.f dtptrs.f dtpttf.f dtpttr.f dtrcon.f dtrevc.f dtrexc.f dtrrfs.f dtrsen.f dtrsna.f dtrsyl.f dtrti2.f dtrtri.f dtrtrs.f dtrttf.f dtrttp.f dtzrqf.f dtzrzf.f dzsum1.f icmax1.f ieeeck.f ilaclc.f ilaclr.f iladiag.f iladlc.f iladlr.f ilaenv.f ilaprec.f ilaslc.f ilaslr.f ilatrans.f ilauplo.f ilaver.f ilazlc.f ilazlr.f iparmq.f izmax1.f lsamen.f sbbcsd.f sbdsdc.f sbdsqr.f scsum1.f sdisna.f sgbbrd.f sgbcon.f sgbequb.f sgbequ.f sgbrfs.f sgbrfsx.f sgbsv.f sgbsvx.f sgbsvxx.f sgbtf2.f sgbtrf.f sgbtrs.f sgebak.f sgebal.f sgebd2.f sgebrd.f sgecon.f sgeequb.f sgeequ.f sgees.f sgeesx.f sgeev.f sgeevx.f sgegs.f sgegv.f sgehd2.f sgehrd.f sgejsv.f sgelq2.f sgelqf.f sgelsd.f sgels.f sgelss.f sgelsx.f sgelsy.f sgemqrt.f sgeql2.f sgeqlf.f sgeqp3.f sgeqpf.f sgeqr2.f sgeqr2p.f sgeqrf.f sgeqrfp.f sgeqrt2.f sgeqrt3.f sgeqrt.f sgerfs.f sgerfsx.f sgerq2.f sgerqf.f sgesc2.f sgesdd.f sgesvd.f sgesv.f sgesvj.f sgesvx.f sgesvxx.f sgetc2.f sgetf2.f sgetrf.f sgetri.f sgetrs.f sggbak.f sggbal.f sgges.f sggesx.f sggev.f sggevx.f sggglm.f sgghrd.f sgglse.f sggqrf.f sggrqf.f sggsvd.f sggsvp.f sgsvj0.f sgsvj1.f sgtcon.f sgtrfs.f sgtsv.f sgtsvx.f sgttrf.f sgttrs.f sgtts2.f shgeqz.f shsein.f shseqr.f sisnan.f slabad.f slabrd.f slacn2.f slacon.f slacpy.f sladiv.f slae2.f slaebz.f slaed0.f slaed1.f slaed2.f slaed3.f slaed4.f slaed5.f slaed6.f slaed7.f slaed8.f slaed9.f slaeda.f slaein.f slaev2.f slaexc.f slag2d.f slag2.f sla_gbamv.f sla_gbrcond.f sla_gbrfsx_extended.f sla_gbrpvgrw.f sla_geamv.f sla_gercond.f sla_gerfsx_extended.f sla_gerpvgrw.f slags2.f slagtf.f slagtm.f slagts.f slagv2.f slahqr.f slahr2.f slahrd.f slaic1.f slaisnan.f sla_lin_berr.f slaln2.f slals0.f slalsa.f slalsd.f slamrg.f slaneg.f slangb.f slange.f slangt.f slanhs.f slansb.f slansf.f slansp.f slanst.f slansy.f slantb.f slantp.f slantr.f slanv2.f slapll.f slapmr.f slapmt.f sla_porcond.f sla_porfsx_extended.f sla_porpvgrw.f slapy2.f slapy3.f slaqgb.f slaqge.f slaqp2.f slaqps.f slaqr0.f slaqr1.f slaqr2.f slaqr3.f slaqr4.f slaqr5.f slaqsb.f slaqsp.f slaqsy.f slaqtr.f slar1v.f slar2v.f slarfb.f slarf.f slarfg.f slarfgp.f slarft.f slarfx.f slargv.f slarnv.f slarra.f slarrb.f slarrc.f slarrd.f slarre.f slarrf.f slarrj.f slarrk.f slarrr.f slarrv.f slarscl2.f slartg.f slartgp.f slartgs.f slartv.f slaruv.f slarzb.f slarz.f slarzt.f slas2.f slascl2.f slascl.f slasd0.f slasd1.f slasd2.f slasd3.f slasd4.f slasd5.f slasd6.f slasd7.f slasd8.f slasda.f slasdq.f slasdt.f slaset.f slasq1.f slasq2.f slasq3.f slasq4.f slasq5.f slasq6.f slasr.f slasrt.f slassq.f slasv2.f slaswp.f slasy2.f sla_syamv.f slasyf.f slasyf_rook.f sla_syrcond.f sla_syrfsx_extended.f sla_syrpvgrw.f slatbs.f slatdf.f slatps.f slatrd.f slatrs.f slatrz.f slatzm.f slauu2.f slauum.f sla_wwaddw.f slazq3.f slazq4.f sopgtr.f sopmtr.f sorbdb1.f sorbdb2.f sorbdb3.f sorbdb4.f sorbdb5.f sorbdb6.f sorbdb.f sorcsd2by1.f sorcsd.f sorg2l.f sorg2r.f sorgbr.f sorghr.f sorgl2.f sorglq.f sorgql.f sorgqr.f sorgr2.f sorgrq.f sorgtr.f sorm2l.f sorm2r.f sormbr.f sormhr.f sorml2.f sormlq.f sormql.f sormqr.f sormr2.f sormr3.f sormrq.f sormrz.f sormtr.f spbcon.f spbequ.f spbrfs.f spbstf.f spbsv.f spbsvx.f spbtf2.f spbtrf.f spbtrs.f spftrf.f spftri.f spftrs.f spocon.f spoequb.f spoequ.f sporfs.f sporfsx.f sposv.f sposvx.f sposvxx.f spotf2.f spotrf.f spotri.f spotrs.f sppcon.f sppequ.f spprfs.f sppsv.f sppsvx.f spptrf.f spptri.f spptrs.f spstf2.f spstrf.f sptcon.f spteqr.f sptrfs.f sptsv.f sptsvx.f spttrf.f spttrs.f sptts2.f srscl.f ssbevd.f ssbev.f ssbevx.f ssbgst.f ssbgvd.f ssbgv.f ssbgvx.f ssbtrd.f ssfrk.f sspcon.f sspevd.f sspev.f sspevx.f sspgst.f sspgvd.f sspgv.f sspgvx.f ssprfs.f sspsv.f sspsvx.f ssptrd.f ssptrf.f ssptri.f ssptrs.f sstebz.f sstedc.f sstegr.f sstein.f sstemr.f ssteqr.f ssterf.f sstevd.f sstev.f sstevr.f sstevx.f ssycon.f ssycon_rook.f ssyconv.f ssyequb.f ssyevd.f ssyev.f ssyevr.f ssyevx.f ssygs2.f ssygst.f ssygvd.f ssygv.f ssygvx.f ssyrfs.f ssyrfsx.f ssysv.f ssysv_rook.f ssysvx.f ssysvxx.f ssyswapr.f ssytd2.f ssytf2.f ssytf2_rook.f ssytrd.f ssytrf.f ssytrf_rook.f ssytri2.f ssytri2x.f ssytri.f ssytri_rook.f ssytrs2.f ssytrs.f ssytrs_rook.f stbcon.f stbrfs.f stbtrs.f stfsm.f stftri.f stfttp.f stfttr.f stgevc.f stgex2.f stgexc.f stgsen.f stgsja.f stgsna.f stgsy2.f stgsyl.f stpcon.f stpmqrt.f stpqrt2.f stpqrt.f stprfb.f stprfs.f stptri.f stptrs.f stpttf.f stpttr.f strcon.f strevc.f strexc.f strrfs.f strsen.f strsna.f strsyl.f strti2.f strtri.f strtrs.f strttf.f strttp.f stzrqf.f stzrzf.f zbbcsd.f zbdsqr.f zcgesv.f zcposv.f zdrscl.f zgbbrd.f zgbcon.f zgbequb.f zgbequ.f zgbrfs.f zgbrfsx.f zgbsv.f zgbsvx.f zgbsvxx.f zgbtf2.f zgbtrf.f zgbtrs.f zgebak.f zgebal.f zgebd2.f zgebrd.f zgecon.f zgeequb.f zgeequ.f zgees.f zgeesx.f zgeev.f zgeevx.f zgegs.f zgegv.f zgehd2.f zgehrd.f zgelq2.f zgelqf.f zgelsd.f zgels.f zgelss.f zgelsx.f zgelsy.f zgemqrt.f zgeql2.f zgeqlf.f zgeqp3.f zgeqpf.f zgeqr2.f zgeqr2p.f zgeqrf.f zgeqrfp.f zgeqrt2.f zgeqrt3.f zgeqrt.f zgerfs.f zgerfsx.f zgerq2.f zgerqf.f zgesc2.f zgesdd.f zgesvd.f zgesv.f zgesvx.f zgesvxx.f zgetc2.f zgetf2.f zgetrf.f zgetri.f zgetrs.f zggbak.f zggbal.f zgges.f zggesx.f zggev.f zggevx.f zggglm.f zgghrd.f zgglse.f zggqrf.f zggrqf.f zggsvd.f zggsvp.f zgtcon.f zgtrfs.f zgtsv.f zgtsvx.f zgttrf.f zgttrs.f zgtts2.f zhbevd.f zhbev.f zhbevx.f zhbgst.f zhbgvd.f zhbgv.f zhbgvx.f zhbtrd.f zhecon.f zhecon_rook.f zheequb.f zheevd.f zheev.f zheevr.f zheevx.f zhegs2.f zhegst.f zhegvd.f zhegv.f zhegvx.f zherfs.f zherfsx.f zhesv.f zhesv_rook.f zhesvx.f zhesvxx.f zheswapr.f zhetd2.f zhetf2.f zhetf2_rook.f zhetrd.f zhetrf.f zhetrf_rook.f zhetri2.f zhetri2x.f zhetri.f zhetri_rook.f zhetrs2.f zhetrs.f zhetrs_rook.f zhfrk.f zhgeqz.f zhpcon.f zhpevd.f zhpev.f zhpevx.f zhpgst.f zhpgvd.f zhpgv.f zhpgvx.f zhprfs.f zhpsv.f zhpsvx.f zhptrd.f zhptrf.f zhptri.f zhptrs.f zhsein.f zhseqr.f zlabrd.f zlacgv.f zlacn2.f zlacon.f zlacp2.f zlacpy.f zlacrm.f zlacrt.f zladiv.f zlaed0.f zlaed7.f zlaed8.f zlaein.f zlaesy.f zlaev2.f zlag2c.f zla_gbamv.f zla_gbrcond_c.f zla_gbrcond_x.f zla_gbrfsx_extended.f zla_gbrpvgrw.f zla_geamv.f zla_gercond_c.f zla_gercond_x.f zla_gerfsx_extended.f zla_gerpvgrw.f zlags2.f zlagtm.f zla_heamv.f zlahef.f zlahef_rook.f zla_hercond_c.f zla_hercond_x.f zla_herfsx_extended.f zla_herpvgrw.f zlahqr.f zlahr2.f zlahrd.f zlaic1.f zla_lin_berr.f zlals0.f zlalsa.f zlalsd.f zlangb.f zlange.f zlangt.f zlanhb.f zlanhe.f zlanhf.f zlanhp.f zlanhs.f zlanht.f zlansb.f zlansp.f zlansy.f zlantb.f zlantp.f zlantr.f zlapll.f zlapmr.f zlapmt.f zla_porcond_c.f zla_porcond_x.f zla_porfsx_extended.f zla_porpvgrw.f zlaqgb.f zlaqge.f zlaqhb.f zlaqhe.f zlaqhp.f zlaqp2.f zlaqps.f zlaqr0.f zlaqr1.f zlaqr2.f zlaqr3.f zlaqr4.f zlaqr5.f zlaqsb.f zlaqsp.f zlaqsy.f zlar1v.f zlar2v.f zlarcm.f zlarfb.f zlarf.f zlarfg.f zlarfgp.f zlarft.f zlarfx.f zlargv.f zlarnv.f zlarrv.f zlarscl2.f zlartg.f zlartv.f zlarzb.f zlarz.f zlarzt.f zlascl2.f zlascl.f zlaset.f zlasr.f zlassq.f zlaswp.f zla_syamv.f zlasyf.f zlasyf_rook.f zla_syrcond_c.f zla_syrcond_x.f zla_syrfsx_extended.f zla_syrpvgrw.f zlat2c.f zlatbs.f zlatdf.f zlatps.f zlatrd.f zlatrs.f zlatrz.f zlatzm.f zlauu2.f zlauum.f zla_wwaddw.f zpbcon.f zpbequ.f zpbrfs.f zpbstf.f zpbsv.f zpbsvx.f zpbtf2.f zpbtrf.f zpbtrs.f zpftrf.f zpftri.f zpftrs.f zpocon.f zpoequb.f zpoequ.f zporfs.f zporfsx.f zposv.f zposvx.f zposvxx.f zpotf2.f zpotrf.f zpotri.f zpotrs.f zppcon.f zppequ.f zpprfs.f zppsv.f zppsvx.f zpptrf.f zpptri.f zpptrs.f zpstf2.f zpstrf.f zptcon.f zpteqr.f zptrfs.f zptsv.f zptsvx.f zpttrf.f zpttrs.f zptts2.f zrot.f zspcon.f zspmv.f zspr.f zsprfs.f zspsv.f zspsvx.f zsptrf.f zsptri.f zsptrs.f zstedc.f zstegr.f zstein.f zstemr.f zsteqr.f zsycon.f zsycon_rook.f zsyconv.f zsyequb.f zsymv.f zsyr.f zsyrfs.f zsyrfsx.f zsysv.f zsysv_rook.f zsysvx.f zsysvxx.f zsyswapr.f zsytf2.f zsytf2_rook.f zsytrf.f zsytrf_rook.f zsytri2.f zsytri2x.f zsytri.f zsytri_rook.f zsytrs2.f zsytrs.f zsytrs_rook.f ztbcon.f ztbrfs.f ztbtrs.f ztfsm.f ztftri.f ztfttp.f ztfttr.f ztgevc.f ztgex2.f ztgexc.f ztgsen.f ztgsja.f ztgsna.f ztgsy2.f ztgsyl.f ztpcon.f ztpmqrt.f ztpqrt2.f ztpqrt.f ztprfb.f ztprfs.f ztptri.f ztptrs.f ztpttf.f ztpttr.f ztrcon.f ztrevc.f ztrexc.f ztrrfs.f ztrsen.f ztrsna.f ztrsyl.f ztrti2.f ztrtri.f ztrtrs.f ztrttf.f ztrttp.f ztzrqf.f ztzrzf.f zunbdb1.f zunbdb2.f zunbdb3.f zunbdb4.f zunbdb5.f zunbdb6.f zunbdb.f zuncsd2by1.f zuncsd.f zung2l.f zung2r.f zungbr.f zunghr.f zungl2.f zunglq.f zungql.f zungqr.f zungr2.f zungrq.f zungtr.f zunm2l.f zunm2r.f zunmbr.f zunmhr.f zunml2.f zunmlq.f zunmql.f zunmqr.f zunmr2.f zunmr3.f zunmrq.f zunmrz.f zunmtr.f zupgtr.f zupmtr.f /usr/bin/ar cr ../libflapack.a slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o /bin/rm -f slaruv.o dlaruv.o cbbcsd.o cbdsqr.o cgbbrd.o cgbcon.o cgbequb.o cgbequ.o cgbrfs.o cgbrfsx.o cgbsv.o cgbsvx.o cgbsvxx.o cgbtf2.o cgbtrf.o cgbtrs.o cgebak.o cgebal.o cgebd2.o cgebrd.o cgecon.o cgeequb.o cgeequ.o cgees.o cgeesx.o cgeev.o cgeevx.o cgegs.o cgegv.o cgehd2.o cgehrd.o cgelq2.o cgelqf.o cgelsd.o cgels.o cgelss.o cgelsx.o cgelsy.o cgemqrt.o cgeql2.o cgeqlf.o cgeqp3.o cgeqpf.o cgeqr2.o cgeqr2p.o cgeqrf.o cgeqrfp.o cgeqrt2.o cgeqrt3.o cgeqrt.o cgerfs.o cgerfsx.o cgerq2.o cgerqf.o cgesc2.o cgesdd.o cgesvd.o cgesv.o cgesvx.o cgesvxx.o cgetc2.o cgetf2.o cgetrf.o cgetri.o cgetrs.o cggbak.o cggbal.o cgges.o cggesx.o cggev.o cggevx.o cggglm.o cgghrd.o cgglse.o cggqrf.o cggrqf.o cggsvd.o cggsvp.o cgtcon.o cgtrfs.o cgtsv.o cgtsvx.o cgttrf.o cgttrs.o cgtts2.o chbevd.o chbev.o chbevx.o chbgst.o chbgvd.o chbgv.o chbgvx.o chbtrd.o checon.o checon_rook.o cheequb.o cheevd.o cheev.o cheevr.o cheevx.o chegs2.o chegst.o chegvd.o chegv.o chegvx.o cherfs.o cherfsx.o chesv.o chesv_rook.o chesvx.o chesvxx.o cheswapr.o chetd2.o chetf2.o chetf2_rook.o chetrd.o chetrf.o chetrf_rook.o chetri2.o chetri2x.o chetri.o chetri_rook.o chetrs2.o chetrs.o chetrs_rook.o chfrk.o chgeqz.o chla_transtype.o chpcon.o chpevd.o chpev.o chpevx.o chpgst.o chpgvd.o chpgv.o chpgvx.o chprfs.o chpsv.o chpsvx.o chptrd.o chptrf.o chptri.o chptrs.o chsein.o chseqr.o clabrd.o clacgv.o clacn2.o clacon.o clacp2.o clacpy.o clacrm.o clacrt.o cladiv.o claed0.o claed7.o claed8.o claein.o claesy.o claev2.o clag2z.o cla_gbamv.o cla_gbrcond_c.o cla_gbrcond_x.o cla_gbrfsx_extended.o cla_gbrpvgrw.o cla_geamv.o cla_gercond_c.o cla_gercond_x.o cla_gerfsx_extended.o cla_gerpvgrw.o clags2.o clagtm.o cla_heamv.o clahef.o clahef_rook.o cla_hercond_c.o cla_hercond_x.o cla_herfsx_extended.o cla_herpvgrw.o clahqr.o clahr2.o clahrd.o claic1.o cla_lin_berr.o clals0.o clalsa.o clalsd.o clangb.o clange.o clangt.o clanhb.o clanhe.o clanhf.o clanhp.o clanhs.o clanht.o clansb.o clansp.o clansy.o clantb.o clantp.o clantr.o clapll.o clapmr.o clapmt.o cla_porcond_c.o cla_porcond_x.o cla_porfsx_extended.o cla_porpvgrw.o claqgb.o claqge.o claqhb.o claqhe.o claqhp.o claqp2.o claqps.o claqr0.o claqr1.o claqr2.o claqr3.o claqr4.o claqr5.o claqsb.o claqsp.o claqsy.o clar1v.o clar2v.o clarcm.o clarfb.o clarf.o clarfg.o clarfgp.o clarft.o clarfx.o clargv.o clarnv.o clarrv.o clarscl2.o clartg.o clartv.o clarzb.o clarz.o clarzt.o clascl2.o clascl.o claset.o clasr.o classq.o claswp.o cla_syamv.o clasyf.o clasyf_rook.o cla_syrcond_c.o cla_syrcond_x.o cla_syrfsx_extended.o cla_syrpvgrw.o clatbs.o clatdf.o clatps.o clatrd.o clatrs.o clatrz.o clatzm.o clauu2.o clauum.o cla_wwaddw.o cpbcon.o cpbequ.o cpbrfs.o cpbstf.o cpbsv.o cpbsvx.o cpbtf2.o cpbtrf.o cpbtrs.o cpftrf.o cpftri.o cpftrs.o cpocon.o cpoequb.o cpoequ.o cporfs.o cporfsx.o cposv.o cposvx.o cposvxx.o cpotf2.o cpotrf.o cpotri.o cpotrs.o cppcon.o cppequ.o cpprfs.o cppsv.o cppsvx.o cpptrf.o cpptri.o cpptrs.o cpstf2.o cpstrf.o cptcon.o cpteqr.o cptrfs.o cptsv.o cptsvx.o cpttrf.o cpttrs.o cptts2.o crot.o cspcon.o cspmv.o cspr.o csprfs.o cspsv.o cspsvx.o csptrf.o csptri.o csptrs.o csrscl.o cstedc.o cstegr.o cstein.o cstemr.o csteqr.o csycon.o csycon_rook.o csyconv.o csyequb.o csymv.o csyr.o csyrfs.o csyrfsx.o csysv.o csysv_rook.o csysvx.o csysvxx.o csyswapr.o csytf2.o csytf2_rook.o csytrf.o csytrf_rook.o csytri2.o csytri2x.o csytri.o csytri_rook.o csytrs2.o csytrs.o csytrs_rook.o ctbcon.o ctbrfs.o ctbtrs.o ctfsm.o ctftri.o ctfttp.o ctfttr.o ctgevc.o ctgex2.o ctgexc.o ctgsen.o ctgsja.o ctgsna.o ctgsy2.o ctgsyl.o ctpcon.o ctpmqrt.o ctpqrt2.o ctpqrt.o ctprfb.o ctprfs.o ctptri.o ctptrs.o ctpttf.o ctpttr.o ctrcon.o ctrevc.o ctrexc.o ctrrfs.o ctrsen.o ctrsna.o ctrsyl.o ctrti2.o ctrtri.o ctrtrs.o ctrttf.o ctrttp.o ctzrqf.o ctzrzf.o cunbdb1.o cunbdb2.o cunbdb3.o cunbdb4.o cunbdb5.o cunbdb6.o cunbdb.o cuncsd2by1.o cuncsd.o cung2l.o cung2r.o cungbr.o cunghr.o cungl2.o cunglq.o cungql.o cungqr.o cungr2.o cungrq.o cungtr.o cunm2l.o cunm2r.o cunmbr.o cunmhr.o cunml2.o cunmlq.o cunmql.o cunmqr.o cunmr2.o cunmr3.o cunmrq.o cunmrz.o cunmtr.o cupgtr.o cupmtr.o dbbcsd.o dbdsdc.o dbdsqr.o ddisna.o dgbbrd.o dgbcon.o dgbequb.o dgbequ.o dgbrfs.o dgbrfsx.o dgbsv.o dgbsvx.o dgbsvxx.o dgbtf2.o dgbtrf.o dgbtrs.o dgebak.o dgebal.o dgebd2.o dgebrd.o dgecon.o dgeequb.o dgeequ.o dgees.o dgeesx.o dgeev.o dgeevx.o dgegs.o dgegv.o dgehd2.o dgehrd.o dgejsv.o dgelq2.o dgelqf.o dgelsd.o dgels.o dgelss.o dgelsx.o dgelsy.o dgemqrt.o dgeql2.o dgeqlf.o dgeqp3.o dgeqpf.o dgeqr2.o dgeqr2p.o dgeqrf.o dgeqrfp.o dgeqrt2.o dgeqrt3.o dgeqrt.o dgerfs.o dgerfsx.o dgerq2.o dgerqf.o dgesc2.o dgesdd.o dgesvd.o dgesv.o dgesvj.o dgesvx.o dgesvxx.o dgetc2.o dgetf2.o dgetrf.o dgetri.o dgetrs.o dggbak.o dggbal.o dgges.o dggesx.o dggev.o dggevx.o dggglm.o dgghrd.o dgglse.o dggqrf.o dggrqf.o dggsvd.o dggsvp.o dgsvj0.o dgsvj1.o dgtcon.o dgtrfs.o dgtsv.o dgtsvx.o dgttrf.o dgttrs.o dgtts2.o dhgeqz.o dhsein.o dhseqr.o disnan.o dlabad.o dlabrd.o dlacn2.o dlacon.o dlacpy.o dladiv.o dlae2.o dlaebz.o dlaed0.o dlaed1.o dlaed2.o dlaed3.o dlaed4.o dlaed5.o dlaed6.o dlaed7.o dlaed8.o dlaed9.o dlaeda.o dlaein.o dlaev2.o dlaexc.o dlag2.o dlag2s.o dla_gbamv.o dla_gbrcond.o dla_gbrfsx_extended.o dla_gbrpvgrw.o dla_geamv.o dla_gercond.o dla_gerfsx_extended.o dla_gerpvgrw.o dlags2.o dlagtf.o dlagtm.o dlagts.o dlagv2.o dlahqr.o dlahr2.o dlahrd.o dlaic1.o dlaisnan.o dla_lin_berr.o dlaln2.o dlals0.o dlalsa.o dlalsd.o dlamrg.o dlaneg.o dlangb.o dlange.o dlangt.o dlanhs.o dlansb.o dlansf.o dlansp.o dlanst.o dlansy.o dlantb.o dlantp.o dlantr.o dlanv2.o dlapll.o dlapmr.o dlapmt.o dla_porcond.o dla_porfsx_extended.o dla_porpvgrw.o dlapy2.o dlapy3.o dlaqgb.o dlaqge.o dlaqp2.o dlaqps.o dlaqr0.o dlaqr1.o dlaqr2.o dlaqr3.o dlaqr4.o dlaqr5.o dlaqsb.o dlaqsp.o dlaqsy.o dlaqtr.o dlar1v.o dlar2v.o dlarfb.o dlarf.o dlarfg.o dlarfgp.o dlarft.o dlarfx.o dlargv.o dlarnv.o dlarra.o dlarrb.o dlarrc.o dlarrd.o dlarre.o dlarrf.o dlarrj.o dlarrk.o dlarrr.o dlarrv.o dlarscl2.o dlartg.o dlartgp.o dlartgs.o dlartv.o dlaruv.o dlarzb.o dlarz.o dlarzt.o dlas2.o dlascl2.o dlascl.o dlasd0.o dlasd1.o dlasd2.o dlasd3.o dlasd4.o dlasd5.o dlasd6.o dlasd7.o dlasd8.o dlasda.o dlasdq.o dlasdt.o dlaset.o dlasq1.o dlasq2.o dlasq3.o dlasq4.o dlasq5.o dlasq6.o dlasr.o dlasrt.o dlassq.o dlasv2.o dlaswp.o dlasy2.o dla_syamv.o dlasyf.o dlasyf_rook.o dla_syrcond.o dla_syrfsx_extended.o dla_syrpvgrw.o dlat2s.o dlatbs.o dlatdf.o dlatps.o dlatrd.o dlatrs.o dlatrz.o dlatzm.o dlauu2.o dlauum.o dla_wwaddw.o dlazq3.o dlazq4.o dopgtr.o dopmtr.o dorbdb1.o dorbdb2.o dorbdb3.o dorbdb4.o dorbdb5.o dorbdb6.o dorbdb.o dorcsd2by1.o dorcsd.o dorg2l.o dorg2r.o dorgbr.o dorghr.o dorgl2.o dorglq.o dorgql.o dorgqr.o dorgr2.o dorgrq.o dorgtr.o dorm2l.o dorm2r.o dormbr.o dormhr.o dorml2.o dormlq.o dormql.o dormqr.o dormr2.o dormr3.o dormrq.o dormrz.o dormtr.o dpbcon.o dpbequ.o dpbrfs.o dpbstf.o dpbsv.o dpbsvx.o dpbtf2.o dpbtrf.o dpbtrs.o dpftrf.o dpftri.o dpftrs.o dpocon.o dpoequb.o dpoequ.o dporfs.o dporfsx.o dposv.o dposvx.o dposvxx.o dpotf2.o dpotrf.o dpotri.o dpotrs.o dppcon.o dppequ.o dpprfs.o dppsv.o dppsvx.o dpptrf.o dpptri.o dpptrs.o dpstf2.o dpstrf.o dptcon.o dpteqr.o dptrfs.o dptsv.o dptsvx.o dpttrf.o dpttrs.o dptts2.o drscl.o dsbevd.o dsbev.o dsbevx.o dsbgst.o dsbgvd.o dsbgv.o dsbgvx.o dsbtrd.o dsfrk.o dsgesv.o dspcon.o dspevd.o dspev.o dspevx.o dspgst.o dspgvd.o dspgv.o dspgvx.o dsposv.o dsprfs.o dspsv.o dspsvx.o dsptrd.o dsptrf.o dsptri.o dsptrs.o dstebz.o dstedc.o dstegr.o dstein.o dstemr.o dsteqr.o dsterf.o dstevd.o dstev.o dstevr.o dstevx.o dsycon.o dsycon_rook.o dsyconv.o dsyequb.o dsyevd.o dsyev.o dsyevr.o dsyevx.o dsygs2.o dsygst.o dsygvd.o dsygv.o dsygvx.o dsyrfs.o dsyrfsx.o dsysv.o dsysv_rook.o dsysvx.o dsysvxx.o dsyswapr.o dsytd2.o dsytf2.o dsytf2_rook.o dsytrd.o dsytrf.o dsytrf_rook.o dsytri2.o dsytri2x.o dsytri.o dsytri_rook.o dsytrs2.o dsytrs.o dsytrs_rook.o dtbcon.o dtbrfs.o dtbtrs.o dtfsm.o dtftri.o dtfttp.o dtfttr.o dtgevc.o dtgex2.o dtgexc.o dtgsen.o dtgsja.o dtgsna.o dtgsy2.o dtgsyl.o dtpcon.o dtpmqrt.o dtpqrt2.o dtpqrt.o dtprfb.o dtprfs.o dtptri.o dtptrs.o dtpttf.o dtpttr.o dtrcon.o dtrevc.o dtrexc.o dtrrfs.o dtrsen.o dtrsna.o dtrsyl.o dtrti2.o dtrtri.o dtrtrs.o dtrttf.o dtrttp.o dtzrqf.o dtzrzf.o dzsum1.o icmax1.o ieeeck.o ilaclc.o ilaclr.o iladiag.o iladlc.o iladlr.o ilaenv.o ilaprec.o ilaslc.o ilaslr.o ilatrans.o ilauplo.o ilaver.o ilazlc.o ilazlr.o iparmq.o izmax1.o lsamen.o sbbcsd.o sbdsdc.o sbdsqr.o scsum1.o sdisna.o sgbbrd.o sgbcon.o sgbequb.o sgbequ.o sgbrfs.o sgbrfsx.o sgbsv.o sgbsvx.o sgbsvxx.o sgbtf2.o sgbtrf.o sgbtrs.o sgebak.o sgebal.o sgebd2.o sgebrd.o sgecon.o sgeequb.o sgeequ.o sgees.o sgeesx.o sgeev.o sgeevx.o sgegs.o sgegv.o sgehd2.o sgehrd.o sgejsv.o sgelq2.o sgelqf.o sgelsd.o sgels.o sgelss.o sgelsx.o sgelsy.o sgemqrt.o sgeql2.o sgeqlf.o sgeqp3.o sgeqpf.o sgeqr2.o sgeqr2p.o sgeqrf.o sgeqrfp.o sgeqrt2.o sgeqrt3.o sgeqrt.o sgerfs.o sgerfsx.o sgerq2.o sgerqf.o sgesc2.o sgesdd.o sgesvd.o sgesv.o sgesvj.o sgesvx.o sgesvxx.o sgetc2.o sgetf2.o sgetrf.o sgetri.o sgetrs.o sggbak.o sggbal.o sgges.o sggesx.o sggev.o sggevx.o sggglm.o sgghrd.o sgglse.o sggqrf.o sggrqf.o sggsvd.o sggsvp.o sgsvj0.o sgsvj1.o sgtcon.o sgtrfs.o sgtsv.o sgtsvx.o sgttrf.o sgttrs.o sgtts2.o shgeqz.o shsein.o shseqr.o sisnan.o slabad.o slabrd.o slacn2.o slacon.o slacpy.o sladiv.o slae2.o slaebz.o slaed0.o slaed1.o slaed2.o slaed3.o slaed4.o slaed5.o slaed6.o slaed7.o slaed8.o slaed9.o slaeda.o slaein.o slaev2.o slaexc.o slag2d.o slag2.o sla_gbamv.o sla_gbrcond.o sla_gbrfsx_extended.o sla_gbrpvgrw.o sla_geamv.o sla_gercond.o sla_gerfsx_extended.o sla_gerpvgrw.o slags2.o slagtf.o slagtm.o slagts.o slagv2.o slahqr.o slahr2.o slahrd.o slaic1.o slaisnan.o sla_lin_berr.o slaln2.o slals0.o slalsa.o slalsd.o slamrg.o slaneg.o slangb.o slange.o slangt.o slanhs.o slansb.o slansf.o slansp.o slanst.o slansy.o slantb.o slantp.o slantr.o slanv2.o slapll.o slapmr.o slapmt.o sla_porcond.o sla_porfsx_extended.o sla_porpvgrw.o slapy2.o slapy3.o slaqgb.o slaqge.o slaqp2.o slaqps.o slaqr0.o slaqr1.o slaqr2.o slaqr3.o slaqr4.o slaqr5.o slaqsb.o slaqsp.o slaqsy.o slaqtr.o slar1v.o slar2v.o slarfb.o slarf.o slarfg.o slarfgp.o slarft.o slarfx.o slargv.o slarnv.o slarra.o slarrb.o slarrc.o slarrd.o slarre.o slarrf.o slarrj.o slarrk.o slarrr.o slarrv.o slarscl2.o slartg.o slartgp.o slartgs.o slartv.o slaruv.o slarzb.o slarz.o slarzt.o slas2.o slascl2.o slascl.o slasd0.o slasd1.o slasd2.o slasd3.o slasd4.o slasd5.o slasd6.o slasd7.o slasd8.o slasda.o slasdq.o slasdt.o slaset.o slasq1.o slasq2.o slasq3.o slasq4.o slasq5.o slasq6.o slasr.o slasrt.o slassq.o slasv2.o slaswp.o slasy2.o sla_syamv.o slasyf.o slasyf_rook.o sla_syrcond.o sla_syrfsx_extended.o sla_syrpvgrw.o slatbs.o slatdf.o slatps.o slatrd.o slatrs.o slatrz.o slatzm.o slauu2.o slauum.o sla_wwaddw.o slazq3.o slazq4.o sopgtr.o sopmtr.o sorbdb1.o sorbdb2.o sorbdb3.o sorbdb4.o sorbdb5.o sorbdb6.o sorbdb.o sorcsd2by1.o sorcsd.o sorg2l.o sorg2r.o sorgbr.o sorghr.o sorgl2.o sorglq.o sorgql.o sorgqr.o sorgr2.o sorgrq.o sorgtr.o sorm2l.o sorm2r.o sormbr.o sormhr.o sorml2.o sormlq.o sormql.o sormqr.o sormr2.o sormr3.o sormrq.o sormrz.o sormtr.o spbcon.o spbequ.o spbrfs.o spbstf.o spbsv.o spbsvx.o spbtf2.o spbtrf.o spbtrs.o spftrf.o spftri.o spftrs.o spocon.o spoequb.o spoequ.o sporfs.o sporfsx.o sposv.o sposvx.o sposvxx.o spotf2.o spotrf.o spotri.o spotrs.o sppcon.o sppequ.o spprfs.o sppsv.o sppsvx.o spptrf.o spptri.o spptrs.o spstf2.o spstrf.o sptcon.o spteqr.o sptrfs.o sptsv.o sptsvx.o spttrf.o spttrs.o sptts2.o srscl.o ssbevd.o ssbev.o ssbevx.o ssbgst.o ssbgvd.o ssbgv.o ssbgvx.o ssbtrd.o ssfrk.o sspcon.o sspevd.o sspev.o sspevx.o sspgst.o sspgvd.o sspgv.o sspgvx.o ssprfs.o sspsv.o sspsvx.o ssptrd.o ssptrf.o ssptri.o ssptrs.o sstebz.o sstedc.o sstegr.o sstein.o sstemr.o ssteqr.o ssterf.o sstevd.o sstev.o sstevr.o sstevx.o ssycon.o ssycon_rook.o ssyconv.o ssyequb.o ssyevd.o ssyev.o ssyevr.o ssyevx.o ssygs2.o ssygst.o ssygvd.o ssygv.o ssygvx.o ssyrfs.o ssyrfsx.o ssysv.o ssysv_rook.o ssysvx.o ssysvxx.o ssyswapr.o ssytd2.o ssytf2.o ssytf2_rook.o ssytrd.o ssytrf.o ssytrf_rook.o ssytri2.o ssytri2x.o ssytri.o ssytri_rook.o ssytrs2.o ssytrs.o ssytrs_rook.o stbcon.o stbrfs.o stbtrs.o stfsm.o stftri.o stfttp.o stfttr.o stgevc.o stgex2.o stgexc.o stgsen.o stgsja.o stgsna.o stgsy2.o stgsyl.o stpcon.o stpmqrt.o stpqrt2.o stpqrt.o stprfb.o stprfs.o stptri.o stptrs.o stpttf.o stpttr.o strcon.o strevc.o strexc.o strrfs.o strsen.o strsna.o strsyl.o strti2.o strtri.o strtrs.o strttf.o strttp.o stzrqf.o stzrzf.o zbbcsd.o zbdsqr.o zcgesv.o zcposv.o zdrscl.o zgbbrd.o zgbcon.o zgbequb.o zgbequ.o zgbrfs.o zgbrfsx.o zgbsv.o zgbsvx.o zgbsvxx.o zgbtf2.o zgbtrf.o zgbtrs.o zgebak.o zgebal.o zgebd2.o zgebrd.o zgecon.o zgeequb.o zgeequ.o zgees.o zgeesx.o zgeev.o zgeevx.o zgegs.o zgegv.o zgehd2.o zgehrd.o zgelq2.o zgelqf.o zgelsd.o zgels.o zgelss.o zgelsx.o zgelsy.o zgemqrt.o zgeql2.o zgeqlf.o zgeqp3.o zgeqpf.o zgeqr2.o zgeqr2p.o zgeqrf.o zgeqrfp.o zgeqrt2.o zgeqrt3.o zgeqrt.o zgerfs.o zgerfsx.o zgerq2.o zgerqf.o zgesc2.o zgesdd.o zgesvd.o zgesv.o zgesvx.o zgesvxx.o zgetc2.o zgetf2.o zgetrf.o zgetri.o zgetrs.o zggbak.o zggbal.o zgges.o zggesx.o zggev.o zggevx.o zggglm.o zgghrd.o zgglse.o zggqrf.o zggrqf.o zggsvd.o zggsvp.o zgtcon.o zgtrfs.o zgtsv.o zgtsvx.o zgttrf.o zgttrs.o zgtts2.o zhbevd.o zhbev.o zhbevx.o zhbgst.o zhbgvd.o zhbgv.o zhbgvx.o zhbtrd.o zhecon.o zhecon_rook.o zheequb.o zheevd.o zheev.o zheevr.o zheevx.o zhegs2.o zhegst.o zhegvd.o zhegv.o zhegvx.o zherfs.o zherfsx.o zhesv.o zhesv_rook.o zhesvx.o zhesvxx.o zheswapr.o zhetd2.o zhetf2.o zhetf2_rook.o zhetrd.o zhetrf.o zhetrf_rook.o zhetri2.o zhetri2x.o zhetri.o zhetri_rook.o zhetrs2.o zhetrs.o zhetrs_rook.o zhfrk.o zhgeqz.o zhpcon.o zhpevd.o zhpev.o zhpevx.o zhpgst.o zhpgvd.o zhpgv.o zhpgvx.o zhprfs.o zhpsv.o zhpsvx.o zhptrd.o zhptrf.o zhptri.o zhptrs.o zhsein.o zhseqr.o zlabrd.o zlacgv.o zlacn2.o zlacon.o zlacp2.o zlacpy.o zlacrm.o zlacrt.o zladiv.o zlaed0.o zlaed7.o zlaed8.o zlaein.o zlaesy.o zlaev2.o zlag2c.o zla_gbamv.o zla_gbrcond_c.o zla_gbrcond_x.o zla_gbrfsx_extended.o zla_gbrpvgrw.o zla_geamv.o zla_gercond_c.o zla_gercond_x.o zla_gerfsx_extended.o zla_gerpvgrw.o zlags2.o zlagtm.o zla_heamv.o zlahef.o zlahef_rook.o zla_hercond_c.o zla_hercond_x.o zla_herfsx_extended.o zla_herpvgrw.o zlahqr.o zlahr2.o zlahrd.o zlaic1.o zla_lin_berr.o zlals0.o zlalsa.o zlalsd.o zlangb.o zlange.o zlangt.o zlanhb.o zlanhe.o zlanhf.o zlanhp.o zlanhs.o zlanht.o zlansb.o zlansp.o zlansy.o zlantb.o zlantp.o zlantr.o zlapll.o zlapmr.o zlapmt.o zla_porcond_c.o zla_porcond_x.o zla_porfsx_extended.o zla_porpvgrw.o zlaqgb.o zlaqge.o zlaqhb.o zlaqhe.o zlaqhp.o zlaqp2.o zlaqps.o zlaqr0.o zlaqr1.o zlaqr2.o zlaqr3.o zlaqr4.o zlaqr5.o zlaqsb.o zlaqsp.o zlaqsy.o zlar1v.o zlar2v.o zlarcm.o zlarfb.o zlarf.o zlarfg.o zlarfgp.o zlarft.o zlarfx.o zlargv.o zlarnv.o zlarrv.o zlarscl2.o zlartg.o zlartv.o zlarzb.o zlarz.o zlarzt.o zlascl2.o zlascl.o zlaset.o zlasr.o zlassq.o zlaswp.o zla_syamv.o zlasyf.o zlasyf_rook.o zla_syrcond_c.o zla_syrcond_x.o zla_syrfsx_extended.o zla_syrpvgrw.o zlat2c.o zlatbs.o zlatdf.o zlatps.o zlatrd.o zlatrs.o zlatrz.o zlatzm.o zlauu2.o zlauum.o zla_wwaddw.o zpbcon.o zpbequ.o zpbrfs.o zpbstf.o zpbsv.o zpbsvx.o zpbtf2.o zpbtrf.o zpbtrs.o zpftrf.o zpftri.o zpftrs.o zpocon.o zpoequb.o zpoequ.o zporfs.o zporfsx.o zposv.o zposvx.o zposvxx.o zpotf2.o zpotrf.o zpotri.o zpotrs.o zppcon.o zppequ.o zpprfs.o zppsv.o zppsvx.o zpptrf.o zpptri.o zpptrs.o zpstf2.o zpstrf.o zptcon.o zpteqr.o zptrfs.o zptsv.o zptsvx.o zpttrf.o zpttrs.o zptts2.o zrot.o zspcon.o zspmv.o zspr.o zsprfs.o zspsv.o zspsvx.o zsptrf.o zsptri.o zsptrs.o zstedc.o zstegr.o zstein.o zstemr.o zsteqr.o zsycon.o zsycon_rook.o zsyconv.o zsyequb.o zsymv.o zsyr.o zsyrfs.o zsyrfsx.o zsysv.o zsysv_rook.o zsysvx.o zsysvxx.o zsyswapr.o zsytf2.o zsytf2_rook.o zsytrf.o zsytrf_rook.o zsytri2.o zsytri2x.o zsytri.o zsytri_rook.o zsytrs2.o zsytrs.o zsytrs_rook.o ztbcon.o ztbrfs.o ztbtrs.o ztfsm.o ztftri.o ztfttp.o ztfttr.o ztgevc.o ztgex2.o ztgexc.o ztgsen.o ztgsja.o ztgsna.o ztgsy2.o ztgsyl.o ztpcon.o ztpmqrt.o ztpqrt2.o ztpqrt.o ztprfb.o ztprfs.o ztptri.o ztptrs.o ztpttf.o ztpttr.o ztrcon.o ztrevc.o ztrexc.o ztrrfs.o ztrsen.o ztrsna.o ztrsyl.o ztrti2.o ztrtri.o ztrtrs.o ztrttf.o ztrttp.o ztzrqf.o ztzrzf.o zunbdb1.o zunbdb2.o zunbdb3.o zunbdb4.o zunbdb5.o zunbdb6.o zunbdb.o zuncsd2by1.o zuncsd.o zung2l.o zung2r.o zungbr.o zunghr.o zungl2.o zunglq.o zungql.o zungqr.o zungr2.o zungrq.o zungtr.o zunm2l.o zunm2r.o zunmbr.o zunmhr.o zunml2.o zunmlq.o zunmql.o zunmqr.o zunmr2.o zunmr3.o zunmrq.o zunmrz.o zunmtr.o zupgtr.o zupmtr.o make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/lapack' cd lapack-extra; make lib FC="mpif90" FOPTFLAGS="-fPIC -g " FNOOPT="-O0 -fPIC " AR="/usr/bin/ar" AR_FLAGS="cr" RM="/bin/rm -f" LIBNAME="libflapack.a" make[1]: Entering directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/lapack-extra' mpif90 -c -O0 -fPIC slamch.f dlamch.f mpif90 -c -fPIC -g ilaver.f /usr/bin/ar cr ../libflapack.a slamch.o dlamch.o ilaver.o /bin/rm -f slamch.o dlamch.o ilaver.o make[1]: Leaving directory `/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2/lapack-extra' /usr/bin/ranlib libflapack.a Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2 && mkdir -p /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib && cp -f libfblas.a libflapack.a /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib Executing: cd /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2 && cp -f tmpmakefile /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/petsc/conf/fblaslapack Not checking for library in Download FBLASLAPACK: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/glade/p/work/fandek/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download FBLASLAPACK: ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include', '/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include', '/glade/apps/opt/usr/include', '/opt/ibmhpc/pecurrent/mpich2/intel/include64', '/opt/ibmhpc/pecurrent/base/include64'] ================================================================================ TEST checkSharedLibrary from config.packages.fblaslapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:626) TESTING: checkSharedLibrary from config.packages.fblaslapack(config/BuildSystem/config/package.py:626) By default we don't care about checking if the library is shared Popping language Cxx ================================================================================ TEST alternateConfigureLibrary from config.packages.f2cblaslapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.f2cblaslapack(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureLibrary from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:333) TESTING: configureLibrary from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:333) ================================================================================ Checking for a functional BLAS and LAPACK in fblaslapack ================================================================================ TEST checkLib from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:100) TESTING: checkLib from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:100) Checking for BLAS and LAPACK symbols Checking for functions [ddot_] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libfblas.a'] ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ddot_(); static void _check_ddot_() { ddot_(); } int main() { _check_ddot_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBFBLAS" to "1" Popping language C Checking for functions [dgetrs_] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libfblas.a', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } int main() { _check_dgetrs_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C Checking for functions [dgeev_] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libfblas.a', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dgeev_(); static void _check_dgeev_() { dgeev_(); } int main() { _check_dgeev_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C Found Fortran mangling on BLAS/LAPACK which is underscore Defined "BLASLAPACK_UNDERSCORE" to "1" ================================================================================ TEST check64BitBLASIndices from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:466) TESTING: check64BitBLASIndices from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:466) Check for and use 64bit integer blas ================================================================================ TEST checkESSL from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:396) TESTING: checkESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:396) Check for the IBM ESSL library Checking for functions [iessl] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char iessl(); static void _check_iessl() { iessl(); } int main() { _check_iessl();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_iessl': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `iessl' Popping language C ================================================================================ TEST checkPESSL from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:408) TESTING: checkPESSL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:408) Check for the IBM PESSL library - and error out - if used instead of ESSL Checking for functions [ipessl] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ipessl(); static void _check_ipessl() { ipessl(); } int main() { _check_ipessl();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_ipessl': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `ipessl' Popping language C ================================================================================ TEST checkMKL from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:402) TESTING: checkMKL from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:402) Check for Intel MKL library Checking for functions [mkl_set_num_threads] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char mkl_set_num_threads(); static void _check_mkl_set_num_threads() { mkl_set_num_threads(); } int main() { _check_mkl_set_num_threads();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Possible ERROR while running linker: exit code 256 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o: In function `_check_mkl_set_num_threads': /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c:5: undefined reference to `mkl_set_num_threads' Popping language C ================================================================================ TEST checkMissing from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:431) TESTING: checkMissing from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:431) Check for missing LAPACK routines Checking for functions [dtrsen_ dgerfs_ dgges_ dtgsen_ dgesvd_ dgetrf_ dgetrs_ dgeev_ dgelss_ dsyev_ dsyevx_ dsygv_ dsygvx_ dpotrf_ dpotrs_ dstebz_ dpttrf_ dpttrs_ dstein_ dorgqr_ dgeqrf_ dgesv_ dhseqr_ dsteqr_] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a'] ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libfblas.a', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dtrsen_(); static void _check_dtrsen_() { dtrsen_(); } char dgerfs_(); static void _check_dgerfs_() { dgerfs_(); } char dgges_(); static void _check_dgges_() { dgges_(); } char dtgsen_(); static void _check_dtgsen_() { dtgsen_(); } char dgesvd_(); static void _check_dgesvd_() { dgesvd_(); } char dgetrf_(); static void _check_dgetrf_() { dgetrf_(); } char dgetrs_(); static void _check_dgetrs_() { dgetrs_(); } char dgeev_(); static void _check_dgeev_() { dgeev_(); } char dgelss_(); static void _check_dgelss_() { dgelss_(); } char dsyev_(); static void _check_dsyev_() { dsyev_(); } char dsyevx_(); static void _check_dsyevx_() { dsyevx_(); } char dsygv_(); static void _check_dsygv_() { dsygv_(); } char dsygvx_(); static void _check_dsygvx_() { dsygvx_(); } char dpotrf_(); static void _check_dpotrf_() { dpotrf_(); } char dpotrs_(); static void _check_dpotrs_() { dpotrs_(); } char dstebz_(); static void _check_dstebz_() { dstebz_(); } char dpttrf_(); static void _check_dpttrf_() { dpttrf_(); } char dpttrs_(); static void _check_dpttrs_() { dpttrs_(); } char dstein_(); static void _check_dstein_() { dstein_(); } char dorgqr_(); static void _check_dorgqr_() { dorgqr_(); } char dgeqrf_(); static void _check_dgeqrf_() { dgeqrf_(); } char dgesv_(); static void _check_dgesv_() { dgesv_(); } char dhseqr_(); static void _check_dhseqr_() { dhseqr_(); } char dsteqr_(); static void _check_dsteqr_() { dsteqr_(); } int main() { _check_dtrsen_(); _check_dgerfs_(); _check_dgges_(); _check_dtgsen_(); _check_dgesvd_(); _check_dgetrf_(); _check_dgetrs_(); _check_dgeev_(); _check_dgelss_(); _check_dsyev_(); _check_dsyevx_(); _check_dsygv_(); _check_dsygvx_(); _check_dpotrf_(); _check_dpotrs_(); _check_dstebz_(); _check_dpttrf_(); _check_dpttrs_(); _check_dstein_(); _check_dorgqr_(); _check_dgeqrf_(); _check_dgesv_(); _check_dhseqr_(); _check_dsteqr_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBFLAPACK" to "1" Popping language C ================================================================================ TEST checklsame from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:444) TESTING: checklsame from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:444) Do the BLAS/LAPACK libraries have a valid lsame() function with correction binding. Lion and xcode 4.2 do not Checking for functions [lsame_] in library ['/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libflapack.a', '/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib/libfblas.a', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char lsame_(); static void _check_lsame_() { lsame_(); } int main() { _check_lsame_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_LIBFLAPACK" to "1" Defined "HAVE_LIBFBLAS" to "1" Defined "HAVE_LIBMPIGF" to "1" Defined "HAVE_LIBIFPORT" to "1" Defined "HAVE_LIBIFCORE" to "1" Defined "HAVE_LIBM" to "1" Defined "HAVE_LIBM" to "1" Popping language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); }Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" char *dgeev_(void); char* testroutine(void){return dgeev_(); } Pushing language C Popping language C Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/libconftest.so -shared /glade/scratch/fandek/petsc-aqKo9_/config.setCompilers/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl ================================================================================ TEST checksdotreturnsdouble from config.packages.BlasLapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/packages/BlasLapack.py:501) TESTING: checksdotreturnsdouble from config.packages.BlasLapack(config/BuildSystem/config/packages/BlasLapack.py:501) Determines if BLAS sdot routine returns a float or a double Checking if sdot() returns a float or a double Pushing language C All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float sdot_(int*,float*,int *,float*,int*); float x1[1] = {3.0}; int one1 = 1; float sdotresult = sdot_(&one1,x1,&one1,x1,&one1); fprintf(output, " '--known-sdot-returns-double=%d',\n",(sdotresult != 9.0)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest Popping language C Checking if snrm() returns a float or a double Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *output = fopen("runtimetestoutput","w"); extern float snrm2_(int*,float*,int*); float x2[1] = {3.0}; int one2 = 1; float normresult = snrm2_(&one2,x2,&one2); fprintf(output, " '--known-snrm2-returns-double=%d',\n",(normresult != 3.0)); ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest.o -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Testing executable /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest to see if it can be run Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest Executing: /glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack/conftest Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.sundials(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.sundials(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.spai(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.spai(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pARMS(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.pARMS(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.ml(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.ml(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_cpardiso(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.mkl_cpardiso(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.elemental(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.elemental(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRegression from PETSc.Regression(/glade/p/work/fandek/petsc/config/PETSc/Regression.py:33) TESTING: configureRegression from PETSc.Regression(config/PETSc/Regression.py:33) Output a file listing the jobs that should be run by the PETSc buildtest Defined make macro "TEST_RUNS" to "C C_X Fortran SSL X HDF5 NETCDF EXODUSII METIS PARMETIS Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex" ================================================================================ TEST alternateConfigureLibrary from config.packages.hypre(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.hypre(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mkl_pardiso(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.mkl_pardiso(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_MT(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.SuperLU_MT(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU_DIST(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.SuperLU_DIST(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuperLU(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.SuperLU(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.SuiteSparse(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.SuiteSparse(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.PaStiX(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.PaStiX(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scalapack(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.scalapack(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MUMPS(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.MUMPS(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Trilinos(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Trilinos(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Chombo(/glade/p/work/fandek/petsc/config/BuildSystem/config/package.py:630) TESTING: alternateConfigureLibrary from config.packages.Chombo(config/BuildSystem/config/package.py:630) Called if --with-packagename=0; does nothing by default ================================================================================ TEST configureRTLDDefault from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:774) TESTING: configureRTLDDefault from PETSc.Configure(config/PETSc/Configure.py:774) All intermediate test results are stored in /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 512 stderr: /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c(4): error: identifier "RTLD_DEFAULT" is undefined void *ptr = RTLD_DEFAULT; ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c (code 2) Source: #include "confdefs.h" #include "conffix.h" #include void *ptr = RTLD_DEFAULT; int main() { ; return 0; } ================================================================================ TEST configurePrefetch from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:624) TESTING: configurePrefetch from PETSc.Configure(config/PETSc/Configure.py:624) Sees if there are any prefetch functions supported Executing: uname -s stdout: Linux Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *v = 0;_mm_prefetch((const char*)v,_MM_HINT_NTA); ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_XMMINTRIN_H" to "1" Defined "Prefetch(a,b,c)" to "_mm_prefetch((const char*)(a),(c))" Defined "PREFETCH_HINT_NTA" to "_MM_HINT_NTA" Defined "PREFETCH_HINT_T0" to "_MM_HINT_T0" Defined "PREFETCH_HINT_T1" to "_MM_HINT_T1" Defined "PREFETCH_HINT_T2" to "_MM_HINT_T2" Popping language Cxx ================================================================================ TEST configureUnused from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:685) TESTING: configureUnused from PETSc.Configure(config/PETSc/Configure.py:685) Sees if __attribute((unused)) is supported Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((unused)) static int myfunc(__attribute((unused)) void *name){ return 1;} int main() { int i = 0; int j = myfunc(&i); typedef void* atype; __attribute((unused)) atype a; ; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "UNUSED" to "__attribute((unused))" Popping language Cxx ================================================================================ TEST configureDeprecated from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:703) TESTING: configureDeprecated from PETSc.Configure(config/PETSc/Configure.py:703) Check if __attribute((deprecated)) is supported Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" __attribute((deprecated)) static int myfunc(void) { return 1;} int main() { ; return 0; } Defined "DEPRECATED(why)" to "__attribute((deprecated))" Popping language Cxx ================================================================================ TEST configureIsatty from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:697) TESTING: configureIsatty from PETSc.Configure(config/PETSc/Configure.py:697) Check if the Unix C function isatty() works correctly Actually just assumes it does not work correctly on batch systems Defined "USE_ISATTY" to "1" ================================================================================ TEST configureExpect from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:723) TESTING: configureExpect from PETSc.Configure(config/PETSc/Configure.py:723) Sees if the __builtin_expect directive is supported Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__builtin_expect(0,1)) return 1;; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_BUILTIN_EXPECT" to "1" Popping language Cxx ================================================================================ TEST configureFunctionName from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:730) TESTING: configureFunctionName from PETSc.Configure(config/PETSc/Configure.py:730) Sees if the compiler supports __func__ or a variant. Falls back on __FUNCT__ which PETSc source defines, but most users do not, thus stack traces through user code are better when the compiler's variant is used. Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Defined "FUNCTION_NAME_C" to "__func__" Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { if (__func__[0] != 'm') return 1;; return 0; } Pushing language CXX Popping language CXX Executing: mpicxx -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language Cxx Defined "FUNCTION_NAME_CXX" to "__func__" ================================================================================ TEST configureIntptrt from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:752) TESTING: configureIntptrt from PETSc.Configure(config/PETSc/Configure.py:752) Determine what to use for uintptr_t Pushing language Cxx Executing: mpicxx -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.options.scalarTypes -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -wd1572 -g -fPIC /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int x; uintptr_t i = (uintptr_t)&x;; return 0; } Defined "UINTPTR_T" to "uintptr_t" Popping language Cxx ================================================================================ TEST configureSolaris from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:779) TESTING: configureSolaris from PETSc.Configure(config/PETSc/Configure.py:779) Solaris specific stuff ================================================================================ TEST configureLinux from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:792) TESTING: configureLinux from PETSc.Configure(config/PETSc/Configure.py:792) Linux specific stuff Defined "HAVE_DOUBLE_ALIGN_MALLOC" to "1" ================================================================================ TEST configureWin32 from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:798) TESTING: configureWin32 from PETSc.Configure(config/PETSc/Configure.py:798) Win32 non-cygwin specific stuff Checking for functions [GetComputerName] in library ['Kernel32.lib'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetComputerName] in library ['kernel32'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetComputerName() { GetComputerName(NULL,NULL);; } int main() { _check_GetComputerName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['Advapi32.lib'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetUserName] in library ['advapi32'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetUserName() { GetUserName(NULL,NULL);; } int main() { _check_GetUserName();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['User32.lib'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [GetDC] in library ['user32'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_GetDC() { GetDC(0);; } int main() { _check_GetDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['Gdi32.lib'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for functions [CreateCompatibleDC] in library ['gdi32'] [] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c(4): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_CreateCompatibleDC() { CreateCompatibleDC(0);; } int main() { _check_CreateCompatibleDC();; return 0; } Compile failed inside link Popping language C Checking for type: int32_t Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { uid_t u; ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if defined(PETSC_HAVE_UNISTD_H) #include #endif int main() { int a=R_OK; ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int a=0; if (S_ISDIR(a)){} ; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c(3): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #include int main() { LARGE_INTEGER a; DWORD b=a.u.HighPart; ; return 0; } Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Possible ERROR while running compiler: exit code 1024 stderr: /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c(3): catastrophic error: cannot open source file "Windows.h" #include ^ compilation aborted for /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c (code 4) Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { int flags = O_BINARY;; return 0; } Defined "PATH_SEPARATOR" to "':'" Defined "REPLACE_DIR_SEPARATOR" to "'\\'" Defined "DIR_SEPARATOR" to "'/'" Defined "DIR" to ""/glade/p/work/fandek/petsc"" ================================================================================ TEST configureCygwinBrokenPipe from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:868) TESTING: configureCygwinBrokenPipe from PETSc.Configure(config/PETSc/Configure.py:868) Cygwin version <= 1.7.18 had issues with pipes and long commands invoked from gnu-make http://cygwin.com/ml/cygwin/2013-05/msg00340.html Executing: uname -s stdout: Linux ================================================================================ TEST configureDefaultArch from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:884) TESTING: configureDefaultArch from PETSc.Configure(config/PETSc/Configure.py:884) ================================================================================ TEST configureScript from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:901) TESTING: configureScript from PETSc.Configure(config/PETSc/Configure.py:901) Output a script in the conf directory which will reproduce the configuration ================================================================================ TEST configureInstall from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:938) TESTING: configureInstall from PETSc.Configure(config/PETSc/Configure.py:938) Setup the directories for installation Defined make rule "shared_install" with dependencies "" and code ['-@echo "Now to check if the libraries are working do:"', '-@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test"', '-@echo "========================================="'] ================================================================================ TEST configureGCOV from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:950) TESTING: configureGCOV from PETSc.Configure(config/PETSc/Configure.py:950) ================================================================================ TEST configureFortranFlush from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:955) TESTING: configureFortranFlush from PETSc.Configure(config/PETSc/Configure.py:955) Checking for functions [flush_] in library [''] ['-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-L/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-L/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-L/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-lmpigf', '-Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib', '-Wl,-rpath,/glade/apps/opt/usr/lib', '-Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64', '-Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7', '-Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32', '-lifport', '-lifcore', '-lm', '-lm'] Pushing language C Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char flush_(); static void _check_flush_() { flush_(); } int main() { _check_flush_();; return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/config.libraries/conftest.o -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lm -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Popping language C Defined "HAVE_FLUSH" to "1" ================================================================================ TEST configureAtoll from PETSc.Configure(/glade/p/work/fandek/petsc/config/PETSc/Configure.py:680) TESTING: configureAtoll from PETSc.Configure(config/PETSc/Configure.py:680) Checks if atoll exists Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { long v = atoll("25"); return 0; } Pushing language C Popping language C Executing: mpicc -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl Defined "HAVE_ATOLL" to "1" Defined make rule "remote" with dependencies "" and code [] Defined make rule "remoteclean" with dependencies "" and code [] Pushing language C Defined make macro "CC_FLAGS" to " -fPIC -wd1572 -g " Popping language C Pushing language Cxx Defined make macro "CXX_FLAGS" to " -wd1572 -g -fPIC " Popping language Cxx Defined make macro "CPP_FLAGS" to "" Pushing language Cxx Defined make macro "PCC" to "mpicxx" Defined make macro "PCC_FLAGS" to " -wd1572 -g -fPIC " Popping language Cxx Defined make macro "CC_SUFFIX" to "o" Pushing language Cxx Defined make macro "PCC_LINKER" to "mpicxx" Defined make macro "PCC_LINKER_FLAGS" to " -wd1572 -g " Popping language Cxx Defined make macro "CC_LINKER_SUFFIX" to "" Pushing language FC Defined "HAVE_FORTRAN" to "1" Defined make macro "FPP_FLAGS" to "" Defined make macro "FC_FLAGS" to " -fPIC -g " Popping language FC Defined make macro "FC_SUFFIX" to "o" Pushing language FC Executing: mpif90 -V Defined make macro "FC_LINKER" to "mpif90" Defined make macro "FC_LINKER_FLAGS" to " -fPIC -g " Popping language FC Defined make macro "FC_MODULE_FLAG" to "-I" Defined make macro "FC_MODULE_OUTPUT_FLAG" to "-module " Pushing language Cxx Defined make macro "SL_LINKER" to "mpicxx" Defined make macro "SL_LINKER_FLAGS" to "${PCC_LINKER_FLAGS}" Popping language Cxx Defined make macro "SL_LINKER_SUFFIX" to "so" Defined "SLSUFFIX" to ""so"" Defined make macro "SL_LINKER_LIBS" to "${PETSC_EXTERNAL_LIB_BASIC}" Defined make macro "PETSC_LANGUAGE" to "CXXONLY" Defined make macro "PETSC_SCALAR" to "real" Defined make macro "PETSC_PRECISION" to "double" Executing: CC -VV Defined "USE_SOCKET_VIEWER" to "1" Executing: mpicc -c -o /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.o -I/glade/scratch/fandek/petsc-aqKo9_/config.compilers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.closure -I/glade/scratch/fandek/petsc-aqKo9_/config.headers -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.cacheDetails -I/glade/scratch/fandek/petsc-aqKo9_/config.atomics -I/glade/scratch/fandek/petsc-aqKo9_/config.functions -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.featureTestMacros -I/glade/scratch/fandek/petsc-aqKo9_/config.utilities.missing -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.MPI -I/glade/scratch/fandek/petsc-aqKo9_/config.setCompilers -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.pthread -I/glade/scratch/fandek/petsc-aqKo9_/config.packages.BlasLapack -I/glade/scratch/fandek/petsc-aqKo9_/config.libraries -I/glade/scratch/fandek/petsc-aqKo9_/config.types -I/glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure -fPIC -wd1572 -g /glade/scratch/fandek/petsc-aqKo9_/PETSc.Configure/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { setsockopt(0,SOL_SOCKET,SO_REUSEADDR,0,0); return 0; } Defined "HAVE_SO_REUSEADDR" to "1" Defined "HAVE_BLASLAPACK" to "1" Defined make macro "BLASLAPACK_LIB" to "-Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas" Defined make macro "BLASLAPACK_INCLUDE" to "" Defined "HAVE_FBLASLAPACK" to "1" Defined make macro "FBLASLAPACK_LIB" to "" Defined make macro "FBLASLAPACK_INCLUDE" to "" Defined "HAVE_PARMETIS" to "1" Defined make macro "PARMETIS_LIB" to "-Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lparmetis" Defined make macro "PARMETIS_INCLUDE" to "-I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include" Defined "HAVE_METIS" to "1" Defined make macro "METIS_LIB" to "-Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis" Defined make macro "METIS_INCLUDE" to "-I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include" Defined "HAVE_EXODUSII" to "1" Defined make macro "EXODUSII_LIB" to "-Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lexoIIv2for -lexodus" Defined make macro "EXODUSII_INCLUDE" to "-I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include" Defined "HAVE_NETCDF" to "1" Defined make macro "NETCDF_LIB" to "" Defined make macro "NETCDF_INCLUDE" to "" Defined "HAVE_HDF5" to "1" Defined make macro "HDF5_LIB" to "-Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5" Defined make macro "HDF5_INCLUDE" to "-I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include" Defined "HAVE_X" to "1" Defined make macro "X_LIB" to "-lX11" Defined make macro "X_INCLUDE" to "" Defined "HAVE_PTHREAD" to "1" Defined make macro "PTHREAD_LIB" to "" Defined make macro "PTHREAD_INCLUDE" to "" Defined "HAVE_SOWING" to "1" Defined make macro "SOWING_LIB" to "" Defined make macro "SOWING_INCLUDE" to "" Defined "HAVE_SSL" to "1" Defined make macro "SSL_LIB" to "" Defined make macro "SSL_INCLUDE" to "" Defined "HAVE_MPI" to "1" Defined make macro "MPI_LIB" to "" Defined make macro "MPI_INCLUDE" to "-I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include" Defined make macro "PETSC_WITH_EXTERNAL_LIB" to "-L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lpetsc -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas -lparmetis -lmetis -lexoIIv2for -lexodus -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lmpigc4 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl " Defined make macro "PETSC_EXTERNAL_LIB_BASIC" to "-Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas -lparmetis -lmetis -lexoIIv2for -lexodus -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lmpigc4 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl " Defined make macro "PETSC_CC_INCLUDES" to "-I/glade/p/work/fandek/petsc/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include" Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Defined make macro "PETSC_FC_INCLUDES" to "-I/glade/p/work/fandek/petsc/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include" Defined make macro "DESTDIR" to "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug" Defined "LIB_DIR" to ""/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib"" Defined make macro "LIBNAME" to "${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX}" Defined make macro "SHLIBS" to "libpetsc" Defined make macro "PETSC_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_KSP_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TS_LIB_BASIC" to "-lpetsc" Defined make macro "PETSC_TAO_LIB_BASIC" to "-lpetsc" Defined "USE_SINGLE_LIBRARY" to "1" Defined make macro "PETSC_SYS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_VEC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_MAT_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_DM_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_KSP_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_SNES_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TS_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_TAO_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CHARACTERISTIC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_LIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "PETSC_CONTRIB" to "${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB}" Defined make macro "CONFIGURE_OPTIONS" to "--with-clanguage=cxx --with-shared-libraries=1 --download-fblaslapack=1 --with-mpi=1 --download-parmetis=1 --download-metis=1 --with-netcdf=1 --download-exodusii=1 --with-hdf5-dir=/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5 --with-debugging=yes --with-c2html=0 --with-64-bit-indices=1 PETSC_ARCH=arch-linux2-cxx-debug" Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Executing: ['/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake', '--version'] stdout: cmake version 2.8.10.2 Pushing language C Popping language C Pushing language FC Popping language FC Pushing language Cxx Popping language Cxx Contents of initial cache file /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/initial_cache_file.cmake : SET (CMAKE_C_COMPILER mpicc CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_C_FLAGS " -fPIC -wd1572 -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_Fortran_COMPILER mpif90 CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_Fortran_FLAGS " -fPIC -g " CACHE STRING "Dummy comment" FORCE) SET (CMAKE_CXX_COMPILER mpicxx CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_CXX_FLAGS " -wd1572 -g -fPIC " CACHE STRING "Dummy comment" FORCE) SET (PETSC_CUDA_HOST_FLAGS ,-wd1572,-g,-fPIC CACHE STRING "Dummy comment" FORCE) SET (CMAKE_AR /usr/bin/ar CACHE FILEPATH "Dummy comment" FORCE) SET (CMAKE_RANLIB /usr/bin/ranlib CACHE FILEPATH "Dummy comment" FORCE) Removing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/CMakeCache.txt Removing: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/CMakeFiles/2.8.10.2 Invoking: ['/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake', '--trace', '--debug-output', '-C/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-cxx-debug', '/glade/p/work/fandek/petsc'] Executing: ['/glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake', '--trace', '--debug-output', '-C/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/initial_cache_file.cmake', '-DPETSC_CMAKE_ARCH:STRING=arch-linux2-cxx-debug', '/glade/p/work/fandek/petsc'] stdout: Running with trace output on. Running with debug output on. -- The C compiler identification is Intel 12.1.0.20120612 Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeDetermineCCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working C compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicc -- works Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting C compiler ABI info Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting C compiler ABI info - done Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- The Fortran compiler identification is Intel Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeDetermineFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working Fortran compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working Fortran compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 -- works Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting Fortran compiler ABI info - done Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Checking whether /glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 supports Fortran 90 Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Checking whether /glade/apps/opt/modulefiles/ys/cmpwrappers/mpif90 supports Fortran 90 -- yes Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestFortranCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- The CXX compiler identification is Intel 12.1.0.20120612 Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeDetermineCXXCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Check for working CXX compiler: /glade/apps/opt/modulefiles/ys/cmpwrappers/mpicxx -- works Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Detecting CXX compiler ABI info - done Called from: [2] /glade/u/apps/opt/cmake/2.8.10.2/gnu/4.7.2/share/cmake-2.8/Modules/CMakeTestCXXCompiler.cmake [1] /glade/p/work/fandek/petsc/CMakeLists.txt -- Configuring done -- Generating /glade/p/work/fandek/petsc/arch-linux2-cxx-debug -- Generating done -- Build files have been written to: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug CMake configured successfully, using as default build Defined make macro "PETSC_BUILD_USING_CMAKE" to "1" Pushing language C Popping language C Pushing language FC Popping language FC ================================================================================ **** arch-linux2-cxx-debug/lib/petsc/conf/petscvariables **** MPICXX_SHOW = /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icpc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigc4 -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt C_DEPFLAGS = -MMD -MP FC_DEFINE_FLAG = -D MPICC_SHOW = /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/icc -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -D__64BIT__ -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt AR_FLAGS = cr CXX_DEPFLAGS = -MMD -MP MPIFC_SHOW = /ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/bin/intel64/ifort -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-Bstatic -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -Wl,-Bdynamic -lgpfs -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -L/glade/apps/opt/usr/lib -Wl,-rpath,/glade/apps/opt/usr/lib -ldl -m64 -Wl,--allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -lmpigf -ldl -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt FAST_AR_FLAGS = Scq FC_MODULE_OUTPUT_FLAG = -module PETSC_LANGUAGE = CXXONLY FC_LINKER_FLAGS = -fPIC -g LIBNAME = ${INSTALL_LIB_DIR}/libpetsc.${AR_LIB_SUFFIX} SL_LINKER = mpicxx PETSC_BUILD_USING_CMAKE = 1 CC_FLAGS = -fPIC -wd1572 -g SOWING_LIB = PETSC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_PRECISION = double PETSC_LIB_BASIC = -lpetsc FC_FLAGS = -fPIC -g BLASLAPACK_LIB = -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas PETSC_MAT_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC = mpicxx SL_LINKER_LIBS = ${PETSC_EXTERNAL_LIB_BASIC} HDF5_INCLUDE = -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include MPI_LIB = SSL_LIB = PETSC_EXTERNAL_LIB_BASIC = -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas -lparmetis -lmetis -lexoIIv2for -lexodus -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lmpigc4 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl HDF5_LIB = -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 SL_LINKER_FLAGS = ${PCC_LINKER_FLAGS} PARMETIS_LIB = -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lparmetis CC_SUFFIX = o EXODUSII_LIB = -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lexoIIv2for -lexodus CONFIGURE_OPTIONS = --with-clanguage=cxx --with-shared-libraries=1 --download-fblaslapack=1 --with-mpi=1 --download-parmetis=1 --download-metis=1 --with-netcdf=1 --download-exodusii=1 --with-hdf5-dir=/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5 --with-debugging=yes --with-c2html=0 --with-64-bit-indices=1 PETSC_ARCH=arch-linux2-cxx-debug SHLIBS = libpetsc METIS_INCLUDE = -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include PETSC_CHARACTERISTIC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PTHREAD_LIB = PETSC_SCALAR = real EXODUSII_INCLUDE = -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include PETSC_FC_INCLUDES = -I/glade/p/work/fandek/petsc/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include CPP_FLAGS = PETSC_TAO_LIB_BASIC = -lpetsc PETSC_KSP_LIB_BASIC = -lpetsc FPP_FLAGS = FC_LINKER = mpif90 PETSC_KSP_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} NETCDF_LIB = CXX_FLAGS = -wd1572 -g -fPIC PCC_LINKER_FLAGS = -wd1572 -g SSL_INCLUDE = PETSC_CONTRIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PETSC_CC_INCLUDES = -I/glade/p/work/fandek/petsc/include -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include PCC_LINKER = mpicxx PETSC_SYS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} PCC_FLAGS = -wd1572 -g -fPIC PTHREAD_INCLUDE = METIS_LIB = -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis NETCDF_INCLUDE = PETSC_TS_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} FBLASLAPACK_INCLUDE = BLASLAPACK_INCLUDE = PETSC_TS_LIB_BASIC = -lpetsc PETSC_VEC_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} CC_LINKER_SUFFIX = FBLASLAPACK_LIB = SL_LINKER_SUFFIX = so PARMETIS_INCLUDE = -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include PETSC_DM_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} DESTDIR = /glade/p/work/fandek/petsc/arch-linux2-cxx-debug FC_MODULE_FLAG = -I X_LIB = -lX11 X_INCLUDE = PETSC_WITH_EXTERNAL_LIB = -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lpetsc -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -lfblas -lparmetis -lmetis -lexoIIv2for -lexodus -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 -lX11 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -lmpigf -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -lifport -lifcore -lm -lmpigc4 -ldl -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lnetcdff -lnetcdf -lhdf5_hl -lhdf5 -lsz -lcurl -lidn -lssl -lcrypto -lz -lgpfs -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -lmpi -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -lirc -lpthread -lrt -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/ia32 -Wl,-rpath,/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -limf -lsvml -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc_s -Wl,-rpath,/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -L/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -Wl,-rpath,/glade/apps/opt/usr/lib -L/glade/apps/opt/usr/lib -Wl,-rpath,/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -L/opt/ibmhpc/pecurrent/mpich2/intel/lib64 -Wl,-rpath,/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/ncar/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -L/glade/u/ssg/ys/opt/intel/12.1.0.233/composer_xe_2011_sp1.11.339/compiler/lib/intel64 -Wl,-rpath,/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7 -ldl SOWING_INCLUDE = PETSC_TAO_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} MPI_INCLUDE = -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include FC_SUFFIX = o PETSC_SNES_LIB = ${C_SH_LIB_PATH} ${PETSC_WITH_EXTERNAL_LIB} SHELL = /bin/sh GREP = /bin/grep MV = /bin/mv PYTHON = /usr/bin/python MKDIR = /bin/mkdir -p SEDINPLACE = /bin/sed -i SED = /bin/sed DIFF = /usr/bin/diff -w GZIP = /usr/bin/gzip RM = /bin/rm -f CP = /bin/cp CC_LINKER_SLFLAG = -Wl,-rpath, CC = mpicc RANLIB = /usr/bin/ranlib DYNAMICLINKER = mpicxx CXX = mpicxx FC = mpif90 CXXCPP = mpicxx -E FC_LINKER_SLFLAG = -Wl,-rpath, CPP = mpicc -E AR_LIB_SUFFIX = a LD_SHARED = mpicxx AR = /usr/bin/ar DIR = /glade/p/work/fandek/petsc PETSC_INDEX_SIZE = 64 OMAKE = /usr/bin/gmake --no-print-directory MAKE_IS_GNUMAKE = 1 MAKE = /usr/bin/gmake MAKE_NP = 24 OMAKE_PRINTDIR = /usr/bin/gmake --print-directory GIT = git MPIEXEC = /opt/ibmhpc/pecurrent/base/bin/mpiexec CMAKE = /glade/apps/opt/cmake/2.8.10.2/gnu/4.7.2/bin/cmake PETSC_SCALAR_SIZE = 64 SL_LINKER_FUNCTION = -shared -Wl,-soname,$(call SONAME_FUNCTION,$(notdir $(1)),$(2)) SONAME_FUNCTION = $(1).so.$(2) BUILDSHAREDLIB = yes GDB = /usr/bin/gdb DSYMUTIL = true DOCTEXT = /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/doctext BIB2HTML = /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bib2html PDFLATEX = /usr/bin/pdflatex BFORT = /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/bfort MAPNAMES = /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/bin/mapnames TEST_RUNS = C C_X Fortran SSL X HDF5 NETCDF EXODUSII METIS PARMETIS Cxx F90 F90_NoComplex F2003 Fortran_NoComplex C_NoComplex **** arch-linux2-cxx-debug/lib/petsc/conf/petscrules **** shared_install: -@echo "Now to check if the libraries are working do:" -@echo "make PETSC_DIR=${PETSC_DIR} PETSC_ARCH=${PETSC_ARCH} test" -@echo "=========================================" remoteclean: remote: libc: ${LIBNAME}(${OBJSC}) libcxx: ${LIBNAME}(${OBJSCXX}) libcu: ${LIBNAME}(${OBJSCU}) libf: ${OBJSF} -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} .F.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .f.o .f90.o .f95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $< .f.a: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $< -${AR} ${AR_FLAGS} ${LIBNAME} $*.o -${RM} $*.o .F.o .F90.o .F95.o: ${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $< shared_arch: shared_linux mpi4py-build: mpi4py-install: petsc4py-build: petsc4py-install: **** arch-linux2-cxx-debug/include/petscconf.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #ifndef IS_COLORING_MAX #define IS_COLORING_MAX 65535 #endif #ifndef STDC_HEADERS #define STDC_HEADERS 1 #endif #ifndef MPIU_COLORING_VALUE #define MPIU_COLORING_VALUE MPI_UNSIGNED_SHORT #endif #ifndef PETSC_UINTPTR_T #define PETSC_UINTPTR_T uintptr_t #endif #ifndef PETSC_HAVE_PTHREAD #define PETSC_HAVE_PTHREAD 1 #endif #ifndef PETSC_HAVE_SSL #define PETSC_HAVE_SSL 1 #endif #ifndef PETSC_DEPRECATED #define PETSC_DEPRECATED(why) __attribute((deprecated)) #endif #ifndef PETSC_REPLACE_DIR_SEPARATOR #define PETSC_REPLACE_DIR_SEPARATOR '\\' #endif #ifndef PETSC_HAVE_HDF5 #define PETSC_HAVE_HDF5 1 #endif #ifndef PETSC_HAVE_SO_REUSEADDR #define PETSC_HAVE_SO_REUSEADDR 1 #endif #ifndef PETSC_HAVE_MPI #define PETSC_HAVE_MPI 1 #endif #ifndef PETSC_PREFETCH_HINT_T2 #define PETSC_PREFETCH_HINT_T2 _MM_HINT_T2 #endif #ifndef PETSC_PREFETCH_HINT_T0 #define PETSC_PREFETCH_HINT_T0 _MM_HINT_T0 #endif #ifndef PETSC_PREFETCH_HINT_T1 #define PETSC_PREFETCH_HINT_T1 _MM_HINT_T1 #endif #ifndef PETSC_HAVE_FORTRAN #define PETSC_HAVE_FORTRAN 1 #endif #ifndef PETSC_DIR #define PETSC_DIR "/glade/p/work/fandek/petsc" #endif #ifndef PETSC_HAVE_X #define PETSC_HAVE_X 1 #endif #ifndef PETSC_LIB_DIR #define PETSC_LIB_DIR "/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib" #endif #ifndef PETSC_HAVE_PARMETIS #define PETSC_HAVE_PARMETIS 1 #endif #ifndef PETSC_USE_SOCKET_VIEWER #define PETSC_USE_SOCKET_VIEWER 1 #endif #ifndef PETSC_USE_ISATTY #define PETSC_USE_ISATTY 1 #endif #ifndef PETSC_HAVE_SOWING #define PETSC_HAVE_SOWING 1 #endif #ifndef PETSC_SLSUFFIX #define PETSC_SLSUFFIX "so" #endif #ifndef PETSC_FUNCTION_NAME_CXX #define PETSC_FUNCTION_NAME_CXX __func__ #endif #ifndef PETSC_HAVE_FLUSH #define PETSC_HAVE_FLUSH 1 #endif #ifndef PETSC_HAVE_FBLASLAPACK #define PETSC_HAVE_FBLASLAPACK 1 #endif #ifndef PETSC_HAVE_ATOLL #define PETSC_HAVE_ATOLL 1 #endif #ifndef PETSC_HAVE_DOUBLE_ALIGN_MALLOC #define PETSC_HAVE_DOUBLE_ALIGN_MALLOC 1 #endif #ifndef PETSC_UNUSED #define PETSC_UNUSED __attribute((unused)) #endif #ifndef PETSC_FUNCTION_NAME_C #define PETSC_FUNCTION_NAME_C __func__ #endif #ifndef PETSC_HAVE_EXODUSII #define PETSC_HAVE_EXODUSII 1 #endif #ifndef PETSC_USE_SINGLE_LIBRARY #define PETSC_USE_SINGLE_LIBRARY 1 #endif #ifndef PETSC_HAVE_BUILTIN_EXPECT #define PETSC_HAVE_BUILTIN_EXPECT 1 #endif #ifndef PETSC_HAVE_NETCDF #define PETSC_HAVE_NETCDF 1 #endif #ifndef PETSC_HAVE_METIS #define PETSC_HAVE_METIS 1 #endif #ifndef PETSC_DIR_SEPARATOR #define PETSC_DIR_SEPARATOR '/' #endif #ifndef PETSC_PATH_SEPARATOR #define PETSC_PATH_SEPARATOR ':' #endif #ifndef PETSC_HAVE_XMMINTRIN_H #define PETSC_HAVE_XMMINTRIN_H 1 #endif #ifndef PETSC_PREFETCH_HINT_NTA #define PETSC_PREFETCH_HINT_NTA _MM_HINT_NTA #endif #ifndef PETSC_Prefetch #define PETSC_Prefetch(a,b,c) _mm_prefetch((const char*)(a),(c)) #endif #ifndef PETSC_HAVE_BLASLAPACK #define PETSC_HAVE_BLASLAPACK 1 #endif #ifndef PETSC_HAVE_GZIP #define PETSC_HAVE_GZIP 1 #endif #ifndef PETSC_HAVE_STRING_H #define PETSC_HAVE_STRING_H 1 #endif #ifndef PETSC_HAVE_SYS_TYPES_H #define PETSC_HAVE_SYS_TYPES_H 1 #endif #ifndef PETSC_HAVE_ENDIAN_H #define PETSC_HAVE_ENDIAN_H 1 #endif #ifndef PETSC_HAVE_SYS_PROCFS_H #define PETSC_HAVE_SYS_PROCFS_H 1 #endif #ifndef PETSC_HAVE_DLFCN_H #define PETSC_HAVE_DLFCN_H 1 #endif #ifndef PETSC_HAVE_SCHED_H #define PETSC_HAVE_SCHED_H 1 #endif #ifndef PETSC_HAVE_STDINT_H #define PETSC_HAVE_STDINT_H 1 #endif #ifndef PETSC_HAVE_LINUX_KERNEL_H #define PETSC_HAVE_LINUX_KERNEL_H 1 #endif #ifndef PETSC_HAVE_TIME_H #define PETSC_HAVE_TIME_H 1 #endif #ifndef PETSC_HAVE_MATH_H #define PETSC_HAVE_MATH_H 1 #endif #ifndef PETSC_HAVE_MATHIMF_H #define PETSC_HAVE_MATHIMF_H 1 #endif #ifndef PETSC_TIME_WITH_SYS_TIME #define PETSC_TIME_WITH_SYS_TIME 1 #endif #ifndef PETSC_HAVE_SYS_PARAM_H #define PETSC_HAVE_SYS_PARAM_H 1 #endif #ifndef PETSC_HAVE_PTHREAD_H #define PETSC_HAVE_PTHREAD_H 1 #endif #ifndef PETSC_HAVE_UNISTD_H #define PETSC_HAVE_UNISTD_H 1 #endif #ifndef PETSC_HAVE_STDLIB_H #define PETSC_HAVE_STDLIB_H 1 #endif #ifndef PETSC_HAVE_SYS_WAIT_H #define PETSC_HAVE_SYS_WAIT_H 1 #endif #ifndef PETSC_HAVE_SETJMP_H #define PETSC_HAVE_SETJMP_H 1 #endif #ifndef PETSC_HAVE_LIMITS_H #define PETSC_HAVE_LIMITS_H 1 #endif #ifndef PETSC_HAVE_SYS_UTSNAME_H #define PETSC_HAVE_SYS_UTSNAME_H 1 #endif #ifndef PETSC_HAVE_NETINET_IN_H #define PETSC_HAVE_NETINET_IN_H 1 #endif #ifndef PETSC_HAVE_SYS_SOCKET_H #define PETSC_HAVE_SYS_SOCKET_H 1 #endif #ifndef PETSC_HAVE_FLOAT_H #define PETSC_HAVE_FLOAT_H 1 #endif #ifndef PETSC_HAVE_SEARCH_H #define PETSC_HAVE_SEARCH_H 1 #endif #ifndef PETSC_HAVE_SYS_RESOURCE_H #define PETSC_HAVE_SYS_RESOURCE_H 1 #endif #ifndef PETSC_HAVE_SYS_TIMES_H #define PETSC_HAVE_SYS_TIMES_H 1 #endif #ifndef PETSC_HAVE_NETDB_H #define PETSC_HAVE_NETDB_H 1 #endif #ifndef PETSC_HAVE_MALLOC_H #define PETSC_HAVE_MALLOC_H 1 #endif #ifndef PETSC_HAVE_PWD_H #define PETSC_HAVE_PWD_H 1 #endif #ifndef PETSC_HAVE_FCNTL_H #define PETSC_HAVE_FCNTL_H 1 #endif #ifndef PETSC_HAVE_STRINGS_H #define PETSC_HAVE_STRINGS_H 1 #endif #ifndef PETSC_HAVE_SYS_SYSINFO_H #define PETSC_HAVE_SYS_SYSINFO_H 1 #endif #ifndef PETSC_HAVE_SYS_TIME_H #define PETSC_HAVE_SYS_TIME_H 1 #endif #ifndef PETSC_USING_F90 #define PETSC_USING_F90 1 #endif #ifndef PETSC_USING_F2003 #define PETSC_USING_F2003 1 #endif #ifndef PETSC_HAVE_RTLD_NOW #define PETSC_HAVE_RTLD_NOW 1 #endif #ifndef PETSC_HAVE_RTLD_LOCAL #define PETSC_HAVE_RTLD_LOCAL 1 #endif #ifndef PETSC_HAVE_RTLD_LAZY #define PETSC_HAVE_RTLD_LAZY 1 #endif #ifndef PETSC_C_STATIC_INLINE #define PETSC_C_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_FORTRAN_UNDERSCORE #define PETSC_HAVE_FORTRAN_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_CXX_NAMESPACE #define PETSC_HAVE_CXX_NAMESPACE 1 #endif #ifndef PETSC_HAVE_RTLD_GLOBAL #define PETSC_HAVE_RTLD_GLOBAL 1 #endif #ifndef PETSC_C_RESTRICT #define PETSC_C_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_RESTRICT #define PETSC_CXX_RESTRICT __restrict__ #endif #ifndef PETSC_CXX_STATIC_INLINE #define PETSC_CXX_STATIC_INLINE static inline #endif #ifndef PETSC_HAVE_LIBPARMETIS #define PETSC_HAVE_LIBPARMETIS 1 #endif #ifndef PETSC_HAVE_LIBMPIGF #define PETSC_HAVE_LIBMPIGF 1 #endif #ifndef PETSC_HAVE_LIBDL #define PETSC_HAVE_LIBDL 1 #endif #ifndef PETSC_HAVE_LIBM #define PETSC_HAVE_LIBM 1 #endif #ifndef PETSC_HAVE_LIBHDF5HL_FORTRAN #define PETSC_HAVE_LIBHDF5HL_FORTRAN 1 #endif #ifndef PETSC_HAVE_LIBFBLAS #define PETSC_HAVE_LIBFBLAS 1 #endif #ifndef PETSC_HAVE_FENV_H #define PETSC_HAVE_FENV_H 1 #endif #ifndef PETSC_HAVE_LIBEXODUS #define PETSC_HAVE_LIBEXODUS 1 #endif #ifndef PETSC_HAVE_LOG2 #define PETSC_HAVE_LOG2 1 #endif #ifndef PETSC_HAVE_LIBHDF5 #define PETSC_HAVE_LIBHDF5 1 #endif #ifndef PETSC_HAVE_LIBHDF5_HL #define PETSC_HAVE_LIBHDF5_HL 1 #endif #ifndef PETSC_HAVE_LIBEXOIIV2FOR #define PETSC_HAVE_LIBEXOIIV2FOR 1 #endif #ifndef PETSC_HAVE_ERF #define PETSC_HAVE_ERF 1 #endif #ifndef PETSC_HAVE_LIBX11 #define PETSC_HAVE_LIBX11 1 #endif #ifndef PETSC_HAVE_LIBIFCORE #define PETSC_HAVE_LIBIFCORE 1 #endif #ifndef PETSC_HAVE_LIBHDF5_FORTRAN #define PETSC_HAVE_LIBHDF5_FORTRAN 1 #endif #ifndef PETSC_HAVE_LIBMETIS #define PETSC_HAVE_LIBMETIS 1 #endif #ifndef PETSC_HAVE_TGAMMA #define PETSC_HAVE_TGAMMA 1 #endif #ifndef PETSC_HAVE_LIBIFPORT #define PETSC_HAVE_LIBIFPORT 1 #endif #ifndef PETSC_HAVE_LIBFLAPACK #define PETSC_HAVE_LIBFLAPACK 1 #endif #ifndef PETSC_ARCH #define PETSC_ARCH "arch-linux2-cxx-debug" #endif #ifndef PETSC_CLANGUAGE_CXX #define PETSC_CLANGUAGE_CXX 1 #endif #ifndef PETSC_USE_ERRORCHECKING #define PETSC_USE_ERRORCHECKING 1 #endif #ifndef PETSC_USE_64BIT_INDICES #define PETSC_USE_64BIT_INDICES 1 #endif #ifndef PETSC_SIZEOF_MPI_COMM #define PETSC_SIZEOF_MPI_COMM 4 #endif #ifndef PETSC_BITS_PER_BYTE #define PETSC_BITS_PER_BYTE 8 #endif #ifndef PETSC_SIZEOF_MPI_FINT #define PETSC_SIZEOF_MPI_FINT 4 #endif #ifndef PETSC_SIZEOF_VOID_P #define PETSC_SIZEOF_VOID_P 8 #endif #ifndef PETSC_RETSIGTYPE #define PETSC_RETSIGTYPE void #endif #ifndef PETSC_HAVE___INT64 #define PETSC_HAVE___INT64 1 #endif #ifndef PETSC_HAVE_CXX_COMPLEX #define PETSC_HAVE_CXX_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_LONG #define PETSC_SIZEOF_LONG 8 #endif #ifndef PETSC_USE_FORTRANKIND #define PETSC_USE_FORTRANKIND 1 #endif #ifndef PETSC_SIZEOF_SIZE_T #define PETSC_SIZEOF_SIZE_T 8 #endif #ifndef PETSC_HAVE_SIGINFO_T #define PETSC_HAVE_SIGINFO_T 1 #endif #ifndef PETSC_SIZEOF_CHAR #define PETSC_SIZEOF_CHAR 1 #endif #ifndef PETSC_SIZEOF_DOUBLE #define PETSC_SIZEOF_DOUBLE 8 #endif #ifndef PETSC_SIZEOF_FLOAT #define PETSC_SIZEOF_FLOAT 4 #endif #ifndef PETSC_HAVE_C99_COMPLEX #define PETSC_HAVE_C99_COMPLEX 1 #endif #ifndef PETSC_SIZEOF_INT #define PETSC_SIZEOF_INT 4 #endif #ifndef PETSC_SIZEOF_LONG_LONG #define PETSC_SIZEOF_LONG_LONG 8 #endif #ifndef PETSC_SIZEOF_SHORT #define PETSC_SIZEOF_SHORT 2 #endif #ifndef PETSC_HAVE_STRCASECMP #define PETSC_HAVE_STRCASECMP 1 #endif #ifndef PETSC_HAVE_GET_NPROCS #define PETSC_HAVE_GET_NPROCS 1 #endif #ifndef PETSC_HAVE_POPEN #define PETSC_HAVE_POPEN 1 #endif #ifndef PETSC_HAVE_SIGSET #define PETSC_HAVE_SIGSET 1 #endif #ifndef PETSC_HAVE_GETWD #define PETSC_HAVE_GETWD 1 #endif #ifndef PETSC_HAVE_VSNPRINTF #define PETSC_HAVE_VSNPRINTF 1 #endif #ifndef PETSC_HAVE_TIMES #define PETSC_HAVE_TIMES 1 #endif #ifndef PETSC_HAVE_DLSYM #define PETSC_HAVE_DLSYM 1 #endif #ifndef PETSC_HAVE_SNPRINTF #define PETSC_HAVE_SNPRINTF 1 #endif #ifndef PETSC_HAVE_IPXFARGC_ #define PETSC_HAVE_IPXFARGC_ 1 #endif #ifndef PETSC_HAVE_GETHOSTBYNAME #define PETSC_HAVE_GETHOSTBYNAME 1 #endif #ifndef PETSC_HAVE_GETCWD #define PETSC_HAVE_GETCWD 1 #endif #ifndef PETSC_HAVE_DLERROR #define PETSC_HAVE_DLERROR 1 #endif #ifndef PETSC_HAVE_FORK #define PETSC_HAVE_FORK 1 #endif #ifndef PETSC_HAVE_RAND #define PETSC_HAVE_RAND 1 #endif #ifndef PETSC_HAVE_GETTIMEOFDAY #define PETSC_HAVE_GETTIMEOFDAY 1 #endif #ifndef PETSC_HAVE_DLCLOSE #define PETSC_HAVE_DLCLOSE 1 #endif #ifndef PETSC_HAVE_UNAME #define PETSC_HAVE_UNAME 1 #endif #ifndef PETSC_HAVE_GETHOSTNAME #define PETSC_HAVE_GETHOSTNAME 1 #endif #ifndef PETSC_HAVE_MKSTEMP #define PETSC_HAVE_MKSTEMP 1 #endif #ifndef PETSC_HAVE_SIGACTION #define PETSC_HAVE_SIGACTION 1 #endif #ifndef PETSC_HAVE_DRAND48 #define PETSC_HAVE_DRAND48 1 #endif #ifndef PETSC_HAVE_MEMALIGN #define PETSC_HAVE_MEMALIGN 1 #endif #ifndef PETSC_HAVE_VA_COPY #define PETSC_HAVE_VA_COPY 1 #endif #ifndef PETSC_HAVE_CLOCK #define PETSC_HAVE_CLOCK 1 #endif #ifndef PETSC_HAVE_ACCESS #define PETSC_HAVE_ACCESS 1 #endif #ifndef PETSC_HAVE_SIGNAL #define PETSC_HAVE_SIGNAL 1 #endif #ifndef PETSC_HAVE_USLEEP #define PETSC_HAVE_USLEEP 1 #endif #ifndef PETSC_HAVE_GETRUSAGE #define PETSC_HAVE_GETRUSAGE 1 #endif #ifndef PETSC_HAVE_VFPRINTF #define PETSC_HAVE_VFPRINTF 1 #endif #ifndef PETSC_HAVE_NANOSLEEP #define PETSC_HAVE_NANOSLEEP 1 #endif #ifndef PETSC_HAVE_GETDOMAINNAME #define PETSC_HAVE_GETDOMAINNAME 1 #endif #ifndef PETSC_HAVE_TIME #define PETSC_HAVE_TIME 1 #endif #ifndef PETSC_HAVE_LSEEK #define PETSC_HAVE_LSEEK 1 #endif #ifndef PETSC_HAVE_SOCKET #define PETSC_HAVE_SOCKET 1 #endif #ifndef PETSC_HAVE_SYSINFO #define PETSC_HAVE_SYSINFO 1 #endif #ifndef PETSC_HAVE_READLINK #define PETSC_HAVE_READLINK 1 #endif #ifndef PETSC_HAVE_REALPATH #define PETSC_HAVE_REALPATH 1 #endif #ifndef PETSC_HAVE_DLOPEN #define PETSC_HAVE_DLOPEN 1 #endif #ifndef PETSC_HAVE_MEMMOVE #define PETSC_HAVE_MEMMOVE 1 #endif #ifndef PETSC_SIGNAL_CAST #define PETSC_SIGNAL_CAST #endif #ifndef PETSC_HAVE_SLEEP #define PETSC_HAVE_SLEEP 1 #endif #ifndef PETSC_HAVE_VPRINTF #define PETSC_HAVE_VPRINTF 1 #endif #ifndef PETSC_HAVE_BZERO #define PETSC_HAVE_BZERO 1 #endif #ifndef PETSC_HAVE_GETPAGESIZE #define PETSC_HAVE_GETPAGESIZE 1 #endif #ifndef PETSC_WRITE_MEMORY_BARRIER #define PETSC_WRITE_MEMORY_BARRIER() asm volatile("sfence":::"memory") #endif #ifndef PETSC_MEMORY_BARRIER #define PETSC_MEMORY_BARRIER() asm volatile("mfence":::"memory") #endif #ifndef PETSC_READ_MEMORY_BARRIER #define PETSC_READ_MEMORY_BARRIER() asm volatile("lfence":::"memory") #endif #ifndef PETSC_CPU_RELAX #define PETSC_CPU_RELAX() asm volatile("rep; nop" ::: "memory") #endif #ifndef PETSC_BLASLAPACK_UNDERSCORE #define PETSC_BLASLAPACK_UNDERSCORE 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_DUP #define PETSC_HAVE_MPI_COMBINER_DUP 1 #endif #ifndef PETSC_HAVE_MPI_COMM_C2F #define PETSC_HAVE_MPI_COMM_C2F 1 #endif #ifndef PETSC_HAVE_MPI_COMBINER_CONTIGUOUS #define PETSC_HAVE_MPI_COMBINER_CONTIGUOUS 1 #endif #ifndef PETSC_HAVE_MPI_EXSCAN #define PETSC_HAVE_MPI_EXSCAN 1 #endif #ifndef PETSC_HAVE_MPI_COMM_F2C #define PETSC_HAVE_MPI_COMM_F2C 1 #endif #ifndef PETSC_HAVE_MPI_FINT #define PETSC_HAVE_MPI_FINT 1 #endif #ifndef PETSC_HAVE_MPI_F90MODULE #define PETSC_HAVE_MPI_F90MODULE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_ENVELOPE #define PETSC_HAVE_MPI_TYPE_GET_ENVELOPE 1 #endif #ifndef PETSC_HAVE_MPI_FINALIZED #define PETSC_HAVE_MPI_FINALIZED 1 #endif #ifndef PETSC_HAVE_MPI_COMM_SPAWN #define PETSC_HAVE_MPI_COMM_SPAWN 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_GET_EXTENT #define PETSC_HAVE_MPI_TYPE_GET_EXTENT 1 #endif #ifndef PETSC_HAVE_MPIX_IALLREDUCE #define PETSC_HAVE_MPIX_IALLREDUCE 1 #endif #ifndef PETSC_HAVE_MPI_WIN_CREATE #define PETSC_HAVE_MPI_WIN_CREATE 1 #endif #ifndef PETSC_HAVE_MPI_REPLACE #define PETSC_HAVE_MPI_REPLACE 1 #endif #ifndef PETSC_HAVE_MPI_TYPE_DUP #define PETSC_HAVE_MPI_TYPE_DUP 1 #endif #ifndef PETSC_HAVE_MPIIO #define PETSC_HAVE_MPIIO 1 #endif #ifndef PETSC_HAVE_MPI_INIT_THREAD #define PETSC_HAVE_MPI_INIT_THREAD 1 #endif #ifndef PETSC_HAVE_MPI_ALLTOALLW #define PETSC_HAVE_MPI_ALLTOALLW 1 #endif #ifndef PETSC_HAVE_MPI_IN_PLACE #define PETSC_HAVE_MPI_IN_PLACE 1 #endif #ifndef PETSC_USE_INFO #define PETSC_USE_INFO 1 #endif #ifndef PETSC_Alignx #define PETSC_Alignx(a,b) #endif #ifndef PETSC_USE_BACKWARD_LOOP #define PETSC_USE_BACKWARD_LOOP 1 #endif #ifndef PETSC_USE_DEBUG #define PETSC_USE_DEBUG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE_SIZE #define PETSC_IS_COLOR_VALUE_TYPE_SIZE PETSC_SIZEOF_SHORT #endif #ifndef PETSC_USE_LOG #define PETSC_USE_LOG 1 #endif #ifndef PETSC_IS_COLOR_VALUE_TYPE #define PETSC_IS_COLOR_VALUE_TYPE short #endif #ifndef PETSC_USE_CTABLE #define PETSC_USE_CTABLE 1 #endif #ifndef PETSC_MEMALIGN #define PETSC_MEMALIGN 16 #endif #ifndef PETSC_VERSION_DATE_GIT #define PETSC_VERSION_DATE_GIT "2015-11-21 16:12:59 -0600" #endif #ifndef PETSC_VERSION_BRANCH_GIT #define PETSC_VERSION_BRANCH_GIT "maint" #endif #ifndef PETSC_VERSION_GIT #define PETSC_VERSION_GIT "v3.6.2-27-g847c243" #endif #ifndef PETSC_USE_SCALAR_REAL #define PETSC_USE_SCALAR_REAL 1 #endif #ifndef PETSC_HAVE_ISINF #define PETSC_HAVE_ISINF 1 #endif #ifndef PETSC_HAVE_ISNAN #define PETSC_HAVE_ISNAN 1 #endif #ifndef PETSC_HAVE_ISNORMAL #define PETSC_HAVE_ISNORMAL 1 #endif #ifndef PETSC_USE_REAL_DOUBLE #define PETSC_USE_REAL_DOUBLE 1 #endif #ifndef PETSC_HAVE_DYNAMIC_LIBRARIES #define PETSC_HAVE_DYNAMIC_LIBRARIES 1 #endif #ifndef PETSC_HAVE_SHARED_LIBRARIES #define PETSC_HAVE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_SHARED_LIBRARIES #define PETSC_USE_SHARED_LIBRARIES 1 #endif #ifndef PETSC_USE_GDB_DEBUGGER #define PETSC_USE_GDB_DEBUGGER 1 #endif #ifndef PETSC_LEVEL1_DCACHE_LINESIZE #define PETSC_LEVEL1_DCACHE_LINESIZE 64 #endif #ifndef PETSC_LEVEL1_DCACHE_SIZE #define PETSC_LEVEL1_DCACHE_SIZE 32768 #endif #ifndef PETSC_LEVEL1_DCACHE_ASSOC #define PETSC_LEVEL1_DCACHE_ASSOC 8 #endif #ifndef PETSC__GNU_SOURCE #define PETSC__GNU_SOURCE 1 #endif #ifndef PETSC__BSD_SOURCE #define PETSC__BSD_SOURCE 1 #endif #ifndef PETSC__DEFAULT_SOURCE #define PETSC__DEFAULT_SOURCE 1 #endif #ifndef PETSC_HAVE_PXFGETARG_NEW #define PETSC_HAVE_PXFGETARG_NEW 1 #endif #ifndef PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT #define PETSC_HAVE_FORTRAN_GET_COMMAND_ARGUMENT 1 #endif #ifndef PETSC_HAVE_GETARG #define PETSC_HAVE_GETARG 1 #endif #ifndef PETSC_USE_PROC_FOR_SIZE #define PETSC_USE_PROC_FOR_SIZE 1 #endif #ifndef PETSC_HAVE_H5PSET_FAPL_MPIO #define PETSC_HAVE_H5PSET_FAPL_MPIO 1 #endif #ifndef PETSC_HAVE_SCHED_CPU_SET_T #define PETSC_HAVE_SCHED_CPU_SET_T 1 #endif #ifndef PETSC_HAVE_PTHREAD_BARRIER_T #define PETSC_HAVE_PTHREAD_BARRIER_T 1 #endif #ifndef PETSC_HAVE_SYS_SYSCTL_H #define PETSC_HAVE_SYS_SYSCTL_H 1 #endif #endif **** arch-linux2-cxx-debug/include/petscfix.h **** #if !defined(INCLUDED_UNKNOWN) #define INCLUDED_UNKNOWN #if defined(__cplusplus) extern "C" { } #else #endif #endif Configure Actions These are the actions performed by configure on the filesystem ----------------------------------------------------------------- Framework: Directory creation : Created the external packages directory: /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages File creation : Created makefile configure header arch-linux2-cxx-debug/lib/petsc/conf/petscvariables File creation : Created makefile configure header arch-linux2-cxx-debug/lib/petsc/conf/petscrules File creation : Created configure header arch-linux2-cxx-debug/include/petscconf.h File creation : Created C specific configure header arch-linux2-cxx-debug/include/petscfix.h SOWING: Download : Git cloned sowing into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/sowing Install : Installed sowing into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug PETSc: File creation : Generated Fortran stubs Build : Set default architecture to arch-linux2-cxx-debug in lib/petsc/conf/petscvariables File creation : Created arch-linux2-cxx-debug/lib/petsc/conf/reconfigure-arch-linux2-cxx-debug.py for automatic reconfiguration EXODUSII: Download : Downloaded exodusii into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/exodus-5.24 Install : Installed exodusii into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug METIS: Download : Downloaded metis into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/metis-5.1.0-p1 Install : Installed metis into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug PARMETIS: Download : Downloaded parmetis into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/parmetis-4.0.3-p2 Install : Installed parmetis into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug FBLASLAPACK: Download : Downloaded fblaslapack into /glade/p/work/fandek/petsc/arch-linux2-cxx-debug/externalpackages/fblaslapack-3.4.2 Pushing language C Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Compilers: C Compiler: mpicc -fPIC -wd1572 -g C++ Compiler: mpicxx -wd1572 -g -fPIC Fortran Compiler: mpif90 -fPIC -g Linkers: Shared linker: mpicxx -shared Dynamic linker: mpicxx -shared make: BLAS/LAPACK: -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lflapack -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lfblas MPI: Includes: -I/glade/apps/opt/netcdf-mpi/4.3.3.1/intel/12.1.5/include -I/glade/apps/opt/usr/include -I/opt/ibmhpc/pecurrent/mpich2/intel/include64 -I/opt/ibmhpc/pecurrent/base/include fblaslapack: cmake: hdf5: Includes: -I/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/include Library: -Wl,-rpath,/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -L/glade/apps/opt/hdf5-mpi/1.8.12/intel/12.1.5/lib -lhdf5hl_fortran -lhdf5_fortran -lhdf5_hl -lhdf5 netcdf: parmetis: Includes: -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include Library: -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lparmetis metis: Includes: -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include Library: -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lmetis X: Library: -lX11 exodusii: Includes: -I/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/include Library: -Wl,-rpath,/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -L/glade/p/work/fandek/petsc/arch-linux2-cxx-debug/lib -lexoIIv2for -lexodus Arch: pthread: sowing: ssl: PETSc: PETSC_ARCH: arch-linux2-cxx-debug PETSC_DIR: /glade/p/work/fandek/petsc Clanguage: Cxx Integer size: 64 Memory alignment: 16 Scalar type: real Precision: double shared libraries: enabled xxx=========================================================================xxx Configure stage complete. Now build PETSc libraries with (gnumake build): make PETSC_DIR=/glade/p/work/fandek/petsc PETSC_ARCH=arch-linux2-cxx-debug all xxx=========================================================================xxx ================================================================================ Finishing Configure Run at Wed Nov 25 21:05:00 2015 ================================================================================