<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">Here is the error message:<div class=""><br class=""></div><div class=""><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">[valencia@euler01 petsc-3.2-p7]$ make test</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">Running test examples to verify correct installation</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">Using PETSC_DIR=/cluster/home/valencia/PETSC/petsc-3.2-p7 and PETSC_ARCH=arch-linux2-c-opt</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">C/C++ example src/snes/examples/tutorials/ex19 run successfully with 1 MPI process</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">C/C++ example src/snes/examples/tutorials/ex19 run successfully with 2 MPI processes</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">--------------Error detected during compile or link!-----------------------</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">See <a href="http://www.mcs.anl.gov/petsc/petsc-2/documentation/faq.html" class="">http://www.mcs.anl.gov/petsc/petsc-2/documentation/faq.html</a></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">mpif90 -c -O3 -I/cluster/home/valencia/PETSC/petsc-3.2-p7/include -I/cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/include -o ex5f.o ex5f.F</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">./ex5f.h(60): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> DM da</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">----------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(56): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> SNES snes</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">---------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(57): error #5082: Syntax error, found ',' when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Vec x,r</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(58): error #5082: Syntax error, found ',' when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Mat J,A</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">./ex5f.h(60): error #6218: This statement is positioned incorrectly and/or has syntax errors.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> DM da</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">----------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(59): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> integer(kind=selected_int_kind(5)) its,i1,i4</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(60): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> integer(kind=selected_int_kind(5)) ierr</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(61): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> real(kind=selected_real_kind(10)) lambda_max,lambda_min</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(62): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> logical(kind=4) flg</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(71): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> external FormInitialGuess</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(72): error #6236: A specification statement cannot appear in the executable section.</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> external FormFunctionLocal,FormJacobianLocal</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(57): error #6404: This name does not have a type, and must have an explicit type. [VECX]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Vec x,r</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(57): error #6404: This name does not have a type, and must have an explicit type. [R]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Vec x,r</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(58): error #6404: This name does not have a type, and must have an explicit type. [MATJ]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Mat J,A</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(58): error #6404: This name does not have a type, and must have an explicit type. [A]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Mat J,A</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(81): error #6404: This name does not have a type, and must have an explicit type. [IERR]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call PetscInitialize(PETSC_NULL_CHARACTER,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------------------------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(87): error #6404: This name does not have a type, and must have an explicit type. [I1]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> i1 = 1</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(88): error #6404: This name does not have a type, and must have an explicit type. [I4]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> i4 = -4</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(89): error #6404: This name does not have a type, and must have an explicit type. [LAMBDA_MAX]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> lambda_max = 6.81</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(90): error #6404: This name does not have a type, and must have an explicit type. [LAMBDA_MIN]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> lambda_min = 0.0</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(93): error #6404: This name does not have a type, and must have an explicit type. [FLG]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> & flg,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">---------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(103): error #6404: This name does not have a type, and must have an explicit type. [SNES]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call SNESCreate(PETSC_COMM_WORLD,snes,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">---------------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(116): error #6404: This name does not have a type, and must have an explicit type. [DA]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> & PETSC_NULL_INTEGER,PETSC_NULL_INTEGER,da,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-------------------------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(121): error #6404: This name does not have a type, and must have an explicit type. [X]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call DMCreateGlobalVector(da,x,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-----------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(152): error #6404: This name does not have a type, and must have an explicit type. [FORMFUNCTIONLOCAL]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call DMDASetLocalFunction(da,FormFunctionLocal,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-----------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(153): error #6404: This name does not have a type, and must have an explicit type. [FORMJACOBIANLOCAL]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call DMDASetLocalJacobian(da,FormJacobianLocal,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">-----------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(173): error #6404: This name does not have a type, and must have an explicit type. [J]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call DMGetMatrix(da,'aij',J,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">--------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(226): error #6404: This name does not have a type, and must have an explicit type. [ITS]</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> call SNESGetIterationNumber(snes,its,ierr)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">---------------------------------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">./ex5f.h(60): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> DM da</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">----------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ex5f.F(271): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = =></div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""> Vec X</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">----------------^</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">/tmp/ifortGXVttY.i(6051): catastrophic error: Too many errors, exiting</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">compilation aborted for ex5f.F (code 1)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">make[3]: [ex5f.o] Error 1 (ignored)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">mpif90 -O3 -o ex5f ex5f.o -L/cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/lib -lpetsc -lX11 -lpthread -Wl,-rpath,/cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lscalapack -lblacs -lsuperlu_4.2 -lml -lmpi_cxx -lumfpack -lamd -lflapack -lfblas -ldl -L/cluster/apps/openmpi/1.6.5/x86_64/intel_15.0.0/lib -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/compiler/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/ipp/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/mkl/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/tbb/lib/intel64 -L/cluster/apps/gcc/4.8.2/lib/gcc/x86_64-unknown-linux-gnu/4.8.2 -L/cluster/apps/gcc/4.8.2/lib64 -L/cluster/apps/gcc/4.8.2/lib -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -lmpi_f90 -lmpi_f77 -lm -lm -lifport -lifcore -lm -lm -lm -lmpi_cxx -ldl -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -ldl </div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: error #10236: File not found: 'ex5f.o'</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">ifort: warning #10315: specifying -lm before files may supersede the Intel(R) math library and affect performance</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">make[3]: [ex5f] Error 1 (ignored)</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">/bin/rm -f ex5f.o</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class="">Completed test examples</div><div style="margin: 0px; font-size: 13px; font-family: Menlo;" class=""><br class=""></div><div class="">
<div class="">_______________________<br class="">Diana Valencia<br class="">Assistant Professor, Physics & Astrophysics<br class="">Department of Physical and Environmental Sciences <br class="">University of Toronto, Scarborough<br class="">1265 Military Trail, Toronto, ON, Canada, M1C 1A4<br class="">Voice 416 208-2986</div>
</div>
<br class=""><div><blockquote type="cite" class=""><div class="">On Oct 13, 2015, at 10:17 PM, Satish Balay <<a href="mailto:balay@mcs.anl.gov" class="">balay@mcs.anl.gov</a>> wrote:</div><br class="Apple-interchange-newline"><div class="">thats wierd..<br class=""><br class="">perhaps there were warnings in 'make test'? [warnings can be ignored]<br class=""><br class="">alternatively - configure pickedup the wrong mpiexec but you are using<br class="">the correct one with your app?<br class=""><br class="">Satish<br class=""><br class="">On Tue, 13 Oct 2015, Diana Valencia wrote:<br class=""><br class=""><blockquote type="cite" class="">I meant to say that the code is working with PETSC despite the fact that when I tested, petsc did not pass the ex5 test.<br class="">cheers<br class="">Diana<br class="">_______________________<br class="">Diana Valencia<br class="">Assistant Professor, Physics & Astrophysics<br class="">Department of Physical and Environmental Sciences <br class="">University of Toronto, Scarborough<br class="">1265 Military Trail, Toronto, ON, Canada, M1C 1A4<br class="">Voice 416 208-2986<br class=""><br class=""><blockquote type="cite" class="">On Oct 13, 2015, at 9:57 PM, Satish Balay <<a href="mailto:balay@mcs.anl.gov" class="">balay@mcs.anl.gov</a>> wrote:<br class=""><br class="">"however ex5 in the test examples failed"<br class=""><br class="">Sorry - this message is a bit confusing. Is petsc working fine for<br class="">your - or are you still having issues?<br class=""><br class="">Satish<br class=""><br class="">On Tue, 13 Oct 2015, Diana Valencia wrote:<br class=""><br class=""><blockquote type="cite" class="">Dear Satish and all petsc users<br class="">Thank you for your email. Antoine Rozel also from the petsc community was able to help me (he also uses the same third party code I was trying to compile)<br class="">The version we use is old, because apparently is the one that works the best for the third party code.<br class="">I had to reinstall petsc, and somehow this fixed it. The code compiled and is now running fine, however ex5 in the test examples failed.<br class="">Thanks for the input.<br class="">Diana<br class=""><br class="">_______________________<br class="">Diana Valencia<br class="">Assistant Professor, Physics & Astrophysics<br class="">Department of Physical and Environmental Sciences <br class="">University of Toronto, Scarborough<br class="">1265 Military Trail, Toronto, ON, Canada, M1C 1A4<br class="">Voice 416 208-2986<br class=""><br class=""><blockquote type="cite" class="">On Oct 8, 2015, at 4:31 PM, Satish Balay <<a href="mailto:balay@mcs.anl.gov" class="">balay@mcs.anl.gov</a>> wrote:<br class=""><br class="">1. Are you able to compile [using petsc makefile] and run PETSc examples?<br class=""><br class="">2. You are missing the link option -L/cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/lib<br class=""><br class="">[you should verify the output from the example compile/link commands -<br class="">and the compile/link command for this application.]<br class=""><br class="">BTW: This is an old version of petsc.<br class=""><br class="">Satish<br class=""><br class="">On Thu, 8 Oct 2015, Diana Valencia wrote:<br class=""><br class=""><blockquote type="cite" class="">Dear PETSc users,<br class=""><br class="">In hopes that one of you can help me solve a compiling problem.<br class=""><br class="">I am compiling a third party code (stagyy and stagyympi) on a cluster. I load the intel and open_mpi libraries to the cluster before compiling with petsc.<br class="">After compiling all the subroutines, I get an error building the code. Here is the stout:<br class=""><br class="">I have set the PETSC_DIR and PETSC_ARCH in the .bashrc file, so I don’t think this is the problem.<br class=""><br class="">Thank you in advance for all your help.<br class="">Diana<br class=""><br class=""><br class="">.<br class="">.<br class="">.<br class="">mpif90 -w -O2 -assume byterecl -r8 -I /cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/include -c main.f90<br class="">mpif90 -w -O2 -assume byterecl -r8 -I /cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/include -c advdif.f90<br class="">mpif90 -w -O2 -assume byterecl -r8 -I /cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/include -o stagyy main.o advdif.o communication.o continents.o evocore.o geometry.o init.o io.o iter.o melting.o miscellaneous.o MPDATA.o multi.o refstate.o phase_change.o poisson.o prolongate_restrict.o relax_all.o relax_cell.o relax_point.o residues.o tracers.o v_advection.o vee_cycle.o viscosity.o crw.o geoid.o implicit_diffusion.o linpack.o plot.o wrtpng.o blas123.o lapack.o nxs_dummy.o PETScimple_mod.o xdmf_hdf5_io_dummy.o bcs_mod.o composition_mod.o control_mod.o continents_mod.o vgrid_mod.o init_mod.o io_mod.o iter_mod.o melting_mod.o meltingfns_mod.o multi_mod.o phase_change_mod.o plot_mod.o precision_mod.o refstat_mod.o stencil_mod.o timestep_mod.o timing_mod.o tracers_mod.o viscosity_mod.o thermochem_mod.o platesLea_mod.o -lpng -L/lib -lpetsc -lX11 -lpthread -Wl,-rpath,/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lscalapack -lblacs -lsuperlu_4.2 -lml -lmpi_cxx -lumfpack -lamd -lflapack -lfblas -ldl -L/cluster/apps/openmpi/1.6.5/x86_64/intel_15.0.0/lib -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/compiler/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/ipp/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/mkl/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/tbb/lib/intel64 -L/cluster/apps/gcc/4.8.2/lib/gcc/x86_64-unknown-linux-gnu/4.8.2 -L/cluster/apps/gcc/4.8.2/lib64 -L/cluster/apps/gcc/4.8.2/lib -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -lmpi_f90 -lmpi_f77 -lm -lm -lifport -lifcore -lm -lm -lm -lmpi_cxx -ldl -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -ldl <br class="">ld: cannot find -lpetsc<br class="">make: *** [stagyy] Error 1<br class="">mpif90 -w -O2 -assume byterecl -r8 -I /cluster/home/valencia/PETSC/petsc-3.2-p7/arch-linux2-c-opt/include -o stagyympi main.o advdif.o communication.o continents.o evocore.o geometry.o init.o io.o iter.o melting.o miscellaneous.o MPDATA.o multi.o refstate.o phase_change.o poisson.o prolongate_restrict.o relax_all.o relax_cell.o relax_point.o residues.o tracers.o v_advection.o vee_cycle.o viscosity.o crw.o geoid.o implicit_diffusion.o linpack.o plot.o wrtpng.o blas123.o lapack.o nxs_to_mpi.o PETScimple_mod.o xdmf_hdf5_io_dummy.o bcs_mod.o composition_mod.o control_mod.o continents_mod.o vgrid_mod.o init_mod.o io_mod.o iter_mod.o melting_mod.o meltingfns_mod.o multi_mod.o phase_change_mod.o plot_mod.o precision_mod.o refstat_mod.o stencil_mod.o timestep_mod.o timing_mod.o tracers_mod.o viscosity_mod.o thermochem_mod.o platesLea_mod.o -lpng -L/lib -lpetsc -lX11 -lpthread -Wl,-rpath,/lib -lcmumps -ldmumps -lsmumps -lzmumps -lmumps_common -lpord -lparmetis -lmetis -lscalapack -lblacs -lsuperlu_4.2 -lml -lmpi_cxx -lumfpack -lamd -lflapack -lfblas -ldl -L/cluster/apps/openmpi/1.6.5/x86_64/intel_15.0.0/lib -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/compiler/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/ipp/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/mkl/lib/intel64 -L/cluster/apps/intel/composer_xe_2015.0.090/composer_xe_2015.0.090/tbb/lib/intel64 -L/cluster/apps/gcc/4.8.2/lib/gcc/x86_64-unknown-linux-gnu/4.8.2 -L/cluster/apps/gcc/4.8.2/lib64 -L/cluster/apps/gcc/4.8.2/lib -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -lmpi_f90 -lmpi_f77 -lm -lm -lifport -lifcore -lm -lm -lm -lmpi_cxx -ldl -lmpi -lopen-rte -lopen-pal -lnuma -lrt -lnsl -lutil -limf -lsvml -lirng -lipgo -ldecimal -lcilkrts -lstdc++ -lgcc_s -lirc -lpthread -lirc_s -ldl <br class="">ld: cannot find -lpetsc<br class="">make: *** [stagyympi] Error 1<br class="">make: Target `both' not remade because of errors.<br class=""><br class="">_______________________<br class="">Diana Valencia<br class="">Assistant Professor, Physics & Astrophysics<br class="">Department of Physical and Environmental Sciences <br class="">University of Toronto, Scarborough<br class="">1265 Military Trail, Toronto, ON, Canada, M1C 1A4<br class="">Voice 416 208-2986<br class=""><br class=""><br class=""></blockquote></blockquote><br class=""><br class=""></blockquote></blockquote><br class=""><br class=""></blockquote></div></blockquote></div><br class=""></div></body></html>