Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ ================================================================================ Starting Configure Run at Wed Aug 5 15:13:43 2015 Configure Options: --configModules=PETSc.Configure --optionsModule=config.compilerOptions --download-chaco=1 --download-ctetgen=1 --download-exodusii=1 --download-fblaslapack=1 --download-hdf5=1 --download-hypre=1 --download-metis=1 --download-mumps=1 --download-netcdf=1 --download-parmetis=1 --download-ptscotch=1 --download-scalapack=1 --download-superlu=1 --download-superlu_dist=1 --download-triangle=1 --with-debugging=0 --with-mpi-dir=/usr/local/opt/open-mpi --with-shared-libraries=1 COPTFLAGS=-O3 PETSC_ARCH=arch-darwin-c-opt-firedrake Working directory: /Users/justin/Software/petsc Machine platform: ('Darwin', 'pacotaco', '14.4.0', 'Darwin Kernel Version 14.4.0: Thu May 28 11:35:04 PDT 2015; root:xnu-2782.30.5~1/RELEASE_X86_64', 'x86_64', 'i386') Python version: 2.7.6 (default, Sep 9 2014, 15:04:36) [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.39)] ================================================================================ Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC ================================================================================ TEST configureExternalPackagesDir from config.framework(/Users/justin/Software/petsc/config/BuildSystem/config/framework.py:833) TESTING: configureExternalPackagesDir from config.framework(config/BuildSystem/config/framework.py:833) ================================================================================ TEST configureDebuggers from config.utilities.debuggers(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/debuggers.py:22) TESTING: configureDebuggers from config.utilities.debuggers(config/BuildSystem/config/utilities/debuggers.py:22) Find a default debugger and determine its arguments Checking for program /usr/local/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/local/bin/gdb...not found Checking for program /usr/bin/gdb...not found Checking for program /bin/gdb...not found Checking for program /usr/sbin/gdb...not found Checking for program /sbin/gdb...not found Checking for program /opt/X11/bin/gdb...not found Checking for program /usr/texbin/gdb...not found Checking for program /Users/justin/gdb...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/local/bin/dbx...not found Checking for program /usr/bin/dbx...not found Checking for program /bin/dbx...not found Checking for program /usr/sbin/dbx...not found Checking for program /sbin/dbx...not found Checking for program /opt/X11/bin/dbx...not found Checking for program /usr/texbin/dbx...not found Checking for program /Users/justin/dbx...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/local/bin/xdb...not found Checking for program /usr/bin/xdb...not found Checking for program /bin/xdb...not found Checking for program /usr/sbin/xdb...not found Checking for program /sbin/xdb...not found Checking for program /opt/X11/bin/xdb...not found Checking for program /usr/texbin/xdb...not found Checking for program /Users/justin/xdb...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/local/bin/dsymutil...not found Checking for program /usr/bin/dsymutil...found Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" Defined make macro "DSYMUTIL" to "/usr/bin/dsymutil" ================================================================================ TEST configureGit from config.sourceControl(/Users/justin/Software/petsc/config/BuildSystem/config/sourceControl.py:24) TESTING: configureGit from config.sourceControl(config/BuildSystem/config/sourceControl.py:24) Find the Git executable Checking for program /usr/local/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/local/bin/git...not found Checking for program /usr/bin/git...found Defined make macro "GIT" to "git" Executing: git --version stdout: git version 2.3.2 (Apple Git-55) ================================================================================ TEST configureCLanguage from PETSc.options.languages(/Users/justin/Software/petsc/config/PETSc/options/languages.py:27) TESTING: configureCLanguage from PETSc.options.languages(config/PETSc/options/languages.py:27) Choose whether to compile the PETSc library using a C or C++ compiler C language is C Defined "CLANGUAGE_C" to "1" ================================================================================ TEST configureDirectories from PETSc.options.petscdir(/Users/justin/Software/petsc/config/PETSc/options/petscdir.py:23) TESTING: configureDirectories from PETSc.options.petscdir(config/PETSc/options/petscdir.py:23) Checks PETSC_DIR and sets if not set Version Information: #define PETSC_VERSION_RELEASE 0 #define PETSC_VERSION_MAJOR 3 #define PETSC_VERSION_MINOR 6 #define PETSC_VERSION_SUBMINOR 1 #define PETSC_VERSION_PATCH 0 #define PETSC_VERSION_DATE "unknown" #define PETSC_VERSION_GIT "unknown" #define PETSC_VERSION_DATE_GIT "unknown" #define PETSC_VERSION_(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_LE(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GT(MAJOR,MINOR,SUBMINOR) \ #define PETSC_VERSION_GE(MAJOR,MINOR,SUBMINOR) \ Defined make macro "DIR" to "/Users/justin/Software/petsc" ================================================================================ TEST configureInstallationMethod from PETSc.options.petscclone(/Users/justin/Software/petsc/config/PETSc/options/petscclone.py:20) TESTING: configureInstallationMethod from PETSc.options.petscclone(config/PETSc/options/petscclone.py:20) bin/maint exists. This appears to be a repository clone .git directory exists Executing: cd /Users/justin/Software/petsc && git describe stdout: v3.6.1-304-g76d20c1 Executing: cd /Users/justin/Software/petsc && git log -1 --pretty=format:%H stdout: 76d20c1ac5199133f90f6776ebe2c48003f124c1 Executing: cd /Users/justin/Software/petsc && git log -1 --pretty=format:%ci stdout: 2015-08-04 17:32:10 -0500 Executing: cd /Users/justin/Software/petsc && git branch stdout: * master Defined "VERSION_GIT" to ""v3.6.1-304-g76d20c1"" Defined "VERSION_DATE_GIT" to ""2015-08-04 17:32:10 -0500"" Defined "VERSION_BRANCH_GIT" to ""master"" ================================================================================ TEST getDatafilespath from PETSc.options.dataFilesPath(/Users/justin/Software/petsc/config/PETSc/options/dataFilesPath.py:29) TESTING: getDatafilespath from PETSc.options.dataFilesPath(config/PETSc/options/dataFilesPath.py:29) Checks what DATAFILESPATH should be ================================================================================ TEST configureArchitecture from PETSc.options.arch(/Users/justin/Software/petsc/config/PETSc/options/arch.py:25) TESTING: configureArchitecture from PETSc.options.arch(config/PETSc/options/arch.py:25) Checks PETSC_ARCH and sets if not set Defined "ARCH" to ""arch-darwin-c-opt-firedrake"" ================================================================================ TEST setInstallDir from PETSc.options.installDir(/Users/justin/Software/petsc/config/PETSc/options/installDir.py:35) TESTING: setInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:35) setup installDir to either prefix or if that is not set to PETSC_DIR/PETSC_ARCH ================================================================================ TEST saveReconfigure from PETSc.options.installDir(/Users/justin/Software/petsc/config/PETSc/options/installDir.py:74) TESTING: saveReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:74) ================================================================================ TEST cleanInstallDir from PETSc.options.installDir(/Users/justin/Software/petsc/config/PETSc/options/installDir.py:67) TESTING: cleanInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:67) ================================================================================ TEST configureInstallDir from PETSc.options.installDir(/Users/justin/Software/petsc/config/PETSc/options/installDir.py:51) TESTING: configureInstallDir from PETSc.options.installDir(config/PETSc/options/installDir.py:51) Makes installDir subdirectories if it does not exist for both prefix install location and PETSc work install location Changed persistence directory to /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf ================================================================================ TEST restoreReconfigure from PETSc.options.installDir(/Users/justin/Software/petsc/config/PETSc/options/installDir.py:87) TESTING: restoreReconfigure from PETSc.options.installDir(config/PETSc/options/installDir.py:87) ================================================================================ TEST setExternalPackagesDir from PETSc.options.externalpackagesdir(/Users/justin/Software/petsc/config/PETSc/options/externalpackagesdir.py:15) TESTING: setExternalPackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:15) ================================================================================ TEST cleanExternalpackagesDir from PETSc.options.externalpackagesdir(/Users/justin/Software/petsc/config/PETSc/options/externalpackagesdir.py:22) TESTING: cleanExternalpackagesDir from PETSc.options.externalpackagesdir(config/PETSc/options/externalpackagesdir.py:22) ================================================================================ TEST printEnvVariables from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1544) TESTING: printEnvVariables from config.setCompilers(config/BuildSystem/config/setCompilers.py:1544) **** printenv **** VERSIONER_PYTHON_PREFER_32_BIT=no HOMEBREW_FC=gfortran-5 LOGNAME=justin USER=justin PATH=/usr/local/bin:/usr/local/bin:/usr/local/bin:/usr/bin:/bin:/usr/sbin:/sbin:/opt/X11/bin:/usr/texbin HOME=/Users/justin DISPLAY=/private/tmp/com.apple.launchd.HarWZUnVKV/org.macosforge.xquartz:0 TERM_PROGRAM=Apple_Terminal LANG=en_US.UTF-8 TERM=xterm-color Apple_PubSub_Socket_Render=/private/tmp/com.apple.launchd.IhishP6oEw/Render VERSIONER_PYTHON_VERSION=2.7 SHLVL=1 PETSC_ARCH=arch-darwin-c-opt-firedrake XPC_FLAGS=0x0 PETSC_DIR=/Users/justin/Software/petsc _=./configure TERM_SESSION_ID=D55DDBF5-968F-4433-B463-C1B20269B28C XPC_SERVICE_NAME=0 PYTHONPATH=/Users/justin/Software/firedrake-deps/firedrake:/Users/justin/Software/firedrake-deps/firedrake: SSH_AUTH_SOCK=/private/tmp/com.apple.launchd.XJFu2yRcCZ/Listeners SHELL=/bin/bash TERM_PROGRAM_VERSION=343.7 HOMEBREW_CC=gcc-5 TMPDIR=/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/ OLDPWD=/Users/justin __CF_USER_TEXT_ENCODING=0x1F5:0x0:0x0 PWD=/Users/justin/Software/petsc HOMEBREW_CXX=g++-5 ================================================================================ TEST resetEnvCompilers from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1551) TESTING: resetEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1551) ================================================================================ TEST checkEnvCompilers from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1581) TESTING: checkEnvCompilers from config.setCompilers(config/BuildSystem/config/setCompilers.py:1581) ================================================================================ TEST checkMPICompilerOverride from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1516) TESTING: checkMPICompilerOverride from config.setCompilers(config/BuildSystem/config/setCompilers.py:1516) Check if --with-mpi-dir is used along with CC CXX or FC compiler options. This usually prevents mpi compilers from being used - so issue a warning ================================================================================ TEST requireMpiLdPath from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1535) TESTING: requireMpiLdPath from config.setCompilers(config/BuildSystem/config/setCompilers.py:1535) OpenMPI wrappers require LD_LIBRARY_PATH set ================================================================================ TEST checkVendor from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:402) TESTING: checkVendor from config.setCompilers(config/BuildSystem/config/setCompilers.py:402) Determine the compiler vendor Compiler vendor is "" ================================================================================ TEST checkInitialFlags from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:412) TESTING: checkInitialFlags from config.setCompilers(config/BuildSystem/config/setCompilers.py:412) Initialize the compiler and linker flags Pushing language C Initialized CFLAGS to Initialized CFLAGS to Initialized LDFLAGS to Popping language C Pushing language CUDA Initialized CUDAFLAGS to Initialized CUDAFLAGS to Initialized LDFLAGS to Popping language CUDA Pushing language Cxx Initialized CXXFLAGS to Initialized CXX_CXXFLAGS to Initialized LDFLAGS to Popping language Cxx Pushing language FC Initialized FFLAGS to Initialized FFLAGS to Initialized LDFLAGS to Popping language FC Initialized CPPFLAGS to Initialized CUDAPPFLAGS to Initialized CXXCPPFLAGS to Initialized CC_LINKER_FLAGS to [] Initialized CXX_LINKER_FLAGS to [] Initialized FC_LINKER_FLAGS to [] Initialized CUDAC_LINKER_FLAGS to [] Initialized sharedLibraryFlags to [] Initialized dynamicLibraryFlags to [] ================================================================================ TEST checkCCompiler from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:538) TESTING: checkCCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:538) Locate a functional C compiler Checking for program /usr/local/opt/open-mpi/bin/mpicc...found Defined make macro "CC" to "/usr/local/opt/open-mpi/bin/mpicc" Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language C ================================================================================ TEST checkCPreprocessor from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:571) TESTING: checkCPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:571) Locate a functional C preprocessor Checking for program /usr/local/opt/open-mpi/bin/mpicc...found Defined make macro "CPP" to "/usr/local/opt/open-mpi/bin/mpicc -E" Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 31 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 76 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/_types/_ct_rune_t.h" 1 3 4 # 31 "/usr/include/sys/_types/_ct_rune_t.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; # 77 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_rune_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rune_t.h" 3 4 typedef __darwin_rune_t rune_t; # 78 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_wchar_t.h" 1 3 4 # 33 "/usr/include/sys/_types/_wchar_t.h" 3 4 typedef __darwin_wchar_t wchar_t; # 81 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 100 "/usr/include/stdlib.h" 2 3 4 # 117 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 127 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) ; void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ) ; size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 239 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 241 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 242 "/usr/include/stdlib.h" 2 3 4 u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) ; void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) ; char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated)); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) ; void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) ; void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language C ================================================================================ TEST checkCUDACompiler from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:612) TESTING: checkCUDACompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:612) Locate a functional CUDA compiler ================================================================================ TEST checkCUDAPreprocessor from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:652) TESTING: checkCUDAPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:652) Locate a functional CUDA preprocessor ================================================================================ TEST checkCxxCompiler from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:764) TESTING: checkCxxCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:764) Locate a functional Cxx compiler Checking for program /usr/local/opt/open-mpi/bin/mpicxx...found Defined make macro "CXX" to "/usr/local/opt/open-mpi/bin/mpicxx" Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkCxxPreprocessor from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:802) TESTING: checkCxxPreprocessor from config.setCompilers(config/BuildSystem/config/setCompilers.py:802) Locate a functional Cxx preprocessor Checking for program /usr/local/opt/open-mpi/bin/mpicxx...found Defined make macro "CXXCPP" to "/usr/local/opt/open-mpi/bin/mpicxx -E" Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conffix.h" 1 extern "C" { } # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc" 2 # 1 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 1 3 # 39 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 # 40 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 # 1 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 1 3 # 194 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 3 # 194 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 3 namespace std { typedef long unsigned int size_t; typedef long int ptrdiff_t; } # 216 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 3 namespace std { inline namespace __cxx11 __attribute__((__abi_tag__ ("cxx11"))) { } } namespace __gnu_cxx { inline namespace __cxx11 __attribute__((__abi_tag__ ("cxx11"))) { } } # 482 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 3 # 1 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/os_defines.h" 1 3 # 483 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 2 3 # 1 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/cpu_defines.h" 1 3 # 486 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/x86_64-apple-darwin14.4.0/bits/c++config.h" 2 3 # 42 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 2 3 # 72 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 extern "C" { void (*signal(int, void (*)(int)))(int); } # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 extern "C" { int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); } # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 extern "C" { pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); } # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 31 "/usr/include/alloca.h" 3 4 extern "C" { void *alloca(size_t); } # 68 "/usr/include/stdlib.h" 2 3 4 # 76 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/_types/_ct_rune_t.h" 1 3 4 # 31 "/usr/include/sys/_types/_ct_rune_t.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; # 77 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_rune_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rune_t.h" 3 4 typedef __darwin_rune_t rune_t; # 78 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_wchar_t.h" 1 3 4 # 81 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 100 "/usr/include/stdlib.h" 2 3 4 # 117 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 127 "/usr/include/stdlib.h" 3 4 extern "C" { void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * , const char * , size_t); int mbtowc(wchar_t * , const char * , size_t); int posix_memalign(void **, size_t, size_t) ; void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ) ; size_t wcstombs(char * , const wchar_t * , size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *, int *); double erand48(unsigned short[3]); char *fcvt(double, int, int *, int *); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * , char * ) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 239 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 241 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 242 "/usr/include/stdlib.h" 2 3 4 u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) ; void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) ; char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated)); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) ; void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) ; void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); } # 73 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 2 3 # 114 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 namespace std __attribute__ ((__visibility__ ("default"))) { using ::div_t; using ::ldiv_t; using ::abort; using ::abs; using ::atexit; using ::atof; using ::atoi; using ::atol; using ::bsearch; using ::calloc; using ::div; using ::exit; using ::free; using ::getenv; using ::labs; using ::ldiv; using ::malloc; using ::mblen; using ::mbstowcs; using ::mbtowc; using ::qsort; using ::rand; using ::realloc; using ::srand; using ::strtod; using ::strtol; using ::strtoul; using ::system; using ::wcstombs; using ::wctomb; inline long abs(long __i) { return __builtin_labs(__i); } inline ldiv_t div(long __i, long __j) { return ldiv(__i, __j); } inline long long abs(long long __x) { return __builtin_llabs (__x); } inline __int128 abs(__int128 __x) { return __x >= 0 ? __x : -__x; } # 195 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 } # 209 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 namespace __gnu_cxx __attribute__ ((__visibility__ ("default"))) { using ::lldiv_t; using ::_Exit; using ::llabs; inline lldiv_t div(long long __n, long long __d) { lldiv_t __q; __q.quot = __n / __d; __q.rem = __n % __d; return __q; } using ::lldiv; # 241 "/usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/cstdlib" 3 using ::atoll; using ::strtoll; using ::strtoull; using ::strtof; using ::strtold; } namespace std { using ::__gnu_cxx::lldiv_t; using ::__gnu_cxx::_Exit; using ::__gnu_cxx::llabs; using ::__gnu_cxx::div; using ::__gnu_cxx::lldiv; using ::__gnu_cxx::atoll; using ::__gnu_cxx::strtof; using ::__gnu_cxx::strtoll; using ::__gnu_cxx::strtoull; using ::__gnu_cxx::strtold; } # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Popping language Cxx ================================================================================ TEST checkFortranCompiler from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:919) TESTING: checkFortranCompiler from config.setCompilers(config/BuildSystem/config/setCompilers.py:919) Locate a functional Fortran compiler Checking for program /usr/local/opt/open-mpi/bin/mpif90...found Defined make macro "FC" to "/usr/local/opt/open-mpi/bin/mpif90" Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkFortranComments from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:940) TESTING: checkFortranComments from config.setCompilers(config/BuildSystem/config/setCompilers.py:940) Make sure fortran comment "!" works Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: ! comment program main end Fortran comments can use ! in column 1 Popping language FC ================================================================================ TEST checkPIC from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1003) TESTING: checkPIC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1003) Determine the PIC option for each compiler - There needs to be a test that checks that the functionality is actually working Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc --help stdout: Usage: gcc-5 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc-5. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying C compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -fPIC Adding C compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -fPIC Popping language C Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx --help stdout: Usage: g++-5 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++-5. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying Cxx compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -fPIC Adding Cxx compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -fPIC Popping language Cxx Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Trying FC compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -fPIC Adding FC compiler flag -fPIC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -fPIC Popping language FC ================================================================================ TEST checkLargeFileIO from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1036) TESTING: checkLargeFileIO from config.setCompilers(config/BuildSystem/config/setCompilers.py:1036) ================================================================================ TEST checkArchiver from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1135) TESTING: checkArchiver from config.setCompilers(config/BuildSystem/config/setCompilers.py:1135) Check that the archiver exists and can make a library usable by the compiler Pushing language C Executing: ar -V Executing: ar -V Defined make macro "FAST_AR_FLAGS" to "Scq" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(int a) { return a+1; } Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/local/bin/ar...not found Checking for program /usr/bin/ar...found Defined make macro "AR" to "/usr/bin/ar" Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/local/bin/ranlib...not found Checking for program /usr/bin/ranlib...found Defined make macro "RANLIB" to "/usr/bin/ranlib -c" Executing: /usr/bin/ar cr /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconf1.a /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conf1.o Executing: /usr/bin/ranlib -c /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconf1.a Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern int foo(int); int main() { int b = foo(1); if (b); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -L/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -lconf1 Defined make macro "AR_FLAGS" to "cr" Defined make macro "AR_LIB_SUFFIX" to "a" Popping language C ================================================================================ TEST checkSharedLinker from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1246) TESTING: checkSharedLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1246) Check that the linker can produce shared libraries Executing: uname -s stdout: Darwin Checking shared linker /usr/local/opt/open-mpi/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /usr/local/opt/open-mpi/bin/mpicc...found Defined make macro "LD_SHARED" to "/usr/local/opt/open-mpi/bin/mpicc" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -dynamiclib -single_module -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -dynamiclib -single_module Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -undefined dynamic_lookup -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -undefined dynamic_lookup Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -multiply_defined suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -multiply_defined suppress Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("hello"); return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int foo(void); int main() { int ret = foo(); if(ret);; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -L/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -lconftest Using shared linker /usr/local/opt/open-mpi/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib Executing: uname -s stdout: Darwin ================================================================================ TEST checkLinkerMac from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1304) TESTING: checkLinkerMac from config.setCompilers(config/BuildSystem/config/setCompilers.py:1304) Tests some Apple Mac specific linker flags Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -Wl,-commons,use_dylibs Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -Wl,-search_paths_first Popping language C Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-commons,use_dylibs Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-search_paths_first Popping language Cxx Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined,suppress Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined -Wl,suppress -Wl,-multiply_defined,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -Wl,-multiply_defined -Wl,suppress Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-commons,use_dylibs -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -Wl,-commons,use_dylibs Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-search_paths_first -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -Wl,-search_paths_first Popping language FC ================================================================================ TEST checkSharedLinkerPaths from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1324) TESTING: checkSharedLinkerPaths from config.setCompilers(config/BuildSystem/config/setCompilers.py:1324) Determine the shared linker path options - IRIX: -rpath - Linux, OSF: -Wl,-rpath, - Solaris: -R - FreeBSD: -Wl,-R, Pushing language C Executing: uname -s stdout: Darwin Executing: /usr/local/opt/open-mpi/bin/mpicc -V Trying C linker flag -Wl,-rpath, Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-rpath,/Users/justin/Software/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid C linker flag -Wl,-rpath,/Users/justin/Software/petsc Popping language C Pushing language Cxx Executing: uname -s stdout: Darwin Executing: /usr/local/opt/open-mpi/bin/mpicc -V Trying Cxx linker flag -Wl,-rpath, Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-rpath,/Users/justin/Software/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid Cxx linker flag -Wl,-rpath,/Users/justin/Software/petsc Popping language Cxx Pushing language FC Executing: uname -s stdout: Darwin Executing: /usr/local/opt/open-mpi/bin/mpicc -V Trying FC linker flag -Wl,-rpath, Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-rpath,/Users/justin/Software/petsc -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Valid FC linker flag -Wl,-rpath,/Users/justin/Software/petsc Popping language FC ================================================================================ TEST checkLibC from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1359) TESTING: checkLibC from config.setCompilers(config/BuildSystem/config/setCompilers.py:1359) Test whether we need to explicitly include libc in shared linking - Mac OSX requires an explicit reference to libc for shared linking Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {void *chunk = malloc(31); free(chunk); return 0;} Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o Shared linking does not require an explicit libc reference ================================================================================ TEST checkDynamicLinker from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1408) TESTING: checkDynamicLinker from config.setCompilers(config/BuildSystem/config/setCompilers.py:1408) Check that the linker can dynamicaly load shared libraries Checking for header: dlfcn.h All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 # 45 "/usr/include/dlfcn.h" 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" Checking for functions [dlopen dlsym dlclose] in library ['dl'] [] Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } char dlsym(); static void _check_dlsym() { dlsym(); } char dlclose(); static void _check_dlclose() { dlclose(); } int main() { _check_dlopen(); _check_dlsym(); _check_dlclose();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -ldl Defined "HAVE_LIBDL" to "1" Popping language C Adding ['dl'] to LIBS Executing: uname -s stdout: Darwin Checking dynamic linker /usr/local/opt/open-mpi/bin/mpicc using flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] Checking for program /usr/local/opt/open-mpi/bin/mpicc...found Defined make macro "DYNAMICLINKER" to "/usr/local/opt/open-mpi/bin/mpicc" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -dynamiclib -single_module -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -ldl Valid C linker flag -dynamiclib -single_module Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -undefined dynamic_lookup -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -ldl Valid C linker flag -undefined dynamic_lookup Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -multiply_defined suppress -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -ldl Valid C linker flag -multiply_defined suppress Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int foo(void) {printf("test");return 0;} Pushing language C Popping language C Pushing language CUDA Popping language CUDA Pushing language Cxx Popping language Cxx Pushing language FC Popping language FC Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:11:3: warning: implicit declaration of function 'printf' [-Wimplicit-function-declaration] printf("Could not load symbol\n"); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:11:3: warning: incompatible implicit declaration of built-in function 'printf' /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:11:3: note: include '' or provide a declaration of 'printf' /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:15:3: warning: incompatible implicit declaration of built-in function 'printf' printf("Invalid return from foo()\n"); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:15:3: note: include '' or provide a declaration of 'printf' /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:19:3: warning: incompatible implicit declaration of built-in function 'printf' printf("Could not close library\n"); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:19:3: note: include '' or provide a declaration of 'printf' Source: #include "confdefs.h" #include "conffix.h" #include int main() { void *handle = dlopen("/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/libconftest.dylib", 0); int (*foo)(void) = (int (*)(void)) dlsym(handle, "foo"); if (!foo) { printf("Could not load symbol\n"); return -1; } if ((*foo)()) { printf("Invalid return from foo()\n"); return -1; } if (dlclose(handle)) { printf("Could not close library\n"); return -1; } ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -ldl Using dynamic linker /usr/local/opt/open-mpi/bin/mpicc with flags ['-dynamiclib -single_module', '-undefined dynamic_lookup', '-multiply_defined suppress'] and library extension dylib ================================================================================ TEST output from config.setCompilers(/Users/justin/Software/petsc/config/BuildSystem/config/setCompilers.py:1460) TESTING: output from config.setCompilers(config/BuildSystem/config/setCompilers.py:1460) Output module data as defines and substitutions Substituting "CC" with "/usr/local/opt/open-mpi/bin/mpicc" Substituting "CFLAGS" with " -fPIC" Defined make macro "CC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "CPP" with "/usr/local/opt/open-mpi/bin/mpicc -E" Substituting "CPPFLAGS" with "" Substituting "CXX" with "/usr/local/opt/open-mpi/bin/mpicxx" Substituting "CXX_CXXFLAGS" with " -fPIC" Substituting "CXXFLAGS" with "" Substituting "CXX_LINKER_SLFLAG" with "-Wl,-rpath," Substituting "CXXCPP" with "/usr/local/opt/open-mpi/bin/mpicxx -E" Substituting "CXXCPPFLAGS" with "" Substituting "FC" with "/usr/local/opt/open-mpi/bin/mpif90" Substituting "FFLAGS" with " -fPIC" Defined make macro "FC_LINKER_SLFLAG" to "-Wl,-rpath," Substituting "LDFLAGS" with "" Substituting "LIBS" with "-ldl " Substituting "SHARED_LIBRARY_FLAG" with "-dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress" Executing: uname -s stdout: Darwin ================================================================================ TEST checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(/Users/justin/Software/petsc/config/PETSc/options/sharedLibraries.py:37) TESTING: checkSharedDynamicPicOptions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:37) ================================================================================ TEST configureSharedLibraries from PETSc.options.sharedLibraries(/Users/justin/Software/petsc/config/PETSc/options/sharedLibraries.py:53) TESTING: configureSharedLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:53) Checks whether shared libraries should be used, for which you must - Specify --with-shared-libraries - Have found a working shared linker Defines PETSC_USE_SHARED_LIBRARIES if they are used Defined make rule "shared_arch" with dependencies "shared_darwin" and code [] Defined make macro "SONAME_FUNCTION" to "$(1).$(2).dylib" Defined make macro "SL_LINKER_FUNCTION" to "-dynamiclib -install_name $(call SONAME_FUNCTION,$(1),$(2)) -compatibility_version $(2) -current_version $(3) -single_module -multiply_defined suppress -undefined dynamic_lookup" Defined make macro "BUILDSHAREDLIB" to "yes" Defined "HAVE_SHARED_LIBRARIES" to "1" Defined "USE_SHARED_LIBRARIES" to "1" ================================================================================ TEST configureDynamicLibraries from PETSc.options.sharedLibraries(/Users/justin/Software/petsc/config/PETSc/options/sharedLibraries.py:96) TESTING: configureDynamicLibraries from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:96) Checks whether dynamic loading is available (with dlfcn.h and libdl) Defined "HAVE_DYNAMIC_LIBRARIES" to "1" ================================================================================ TEST configureSerializedFunctions from PETSc.options.sharedLibraries(/Users/justin/Software/petsc/config/PETSc/options/sharedLibraries.py:102) TESTING: configureSerializedFunctions from PETSc.options.sharedLibraries(config/PETSc/options/sharedLibraries.py:102) Defines PETSC_SERIALIZE_FUNCTIONS if they are used Requires shared libraries ================================================================================ TEST configureIndexSize from PETSc.options.indexTypes(/Users/justin/Software/petsc/config/PETSc/options/indexTypes.py:31) TESTING: configureIndexSize from PETSc.options.indexTypes(config/PETSc/options/indexTypes.py:31) Defined make macro "PETSC_INDEX_SIZE" to "32" ================================================================================ TEST configureCompilerFlags from config.compilerFlags(/Users/justin/Software/petsc/config/BuildSystem/config/compilerFlags.py:71) TESTING: configureCompilerFlags from config.compilerFlags(config/BuildSystem/config/compilerFlags.py:71) Get the default compiler flags Defined make macro "MPICC_SHOW" to "gcc-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi" Trying C compiler flag -Wall Trying C compiler flag -Wwrite-strings Trying C compiler flag -Wno-strict-aliasing Trying C compiler flag -Wno-unknown-pragmas Trying C compiler flag -O3 Defined make macro "MPICXX_SHOW" to "g++-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_cxx -lmpi" Trying Cxx compiler flag -Wall Trying Cxx compiler flag -Wwrite-strings Trying Cxx compiler flag -Wno-strict-aliasing Trying Cxx compiler flag -Wno-unknown-pragmas Defined make macro "MPICXX_SHOW" to "g++-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_cxx -lmpi" Trying Cxx compiler flag -O Defined make macro "MPIFC_SHOW" to "/usr/local/bin/gfortran -I/usr/local/Cellar/open-mpi/1.8.6/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -Wall Trying FC compiler flag -Wno-unused-variable Trying FC compiler flag -ffree-line-length-0 Trying FC compiler flag -Wno-unused-dummy-argument Defined make macro "MPIFC_SHOW" to "/usr/local/bin/gfortran -I/usr/local/Cellar/open-mpi/1.8.6/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" Trying FC compiler flag -O Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wall Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wwrite-strings Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-strict-aliasing Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -Wno-unknown-pragmas Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added C compiler flag -O3 Popping language C Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wall Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wwrite-strings Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-strict-aliasing Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -Wno-unknown-pragmas Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Added Cxx compiler flag -O Popping language Cxx Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wall Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-variable Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -ffree-line-length-0 Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -Wno-unused-dummy-argument Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Added FC compiler flag -O Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpicc --version stdout: gcc-5 (Homebrew gcc 5.2.0) 5.2.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /usr/local/opt/open-mpi/bin/mpicc gcc-5 (Homebrew gcc 5.2.0) 5.2.0 Executing: /usr/local/opt/open-mpi/bin/mpicc -show stdout: gcc-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi Executing: gcc-5 --help stdout: Usage: gcc-5 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gcc-5. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /usr/local/opt/open-mpi/bin/mpicxx --version stdout: g++-5 (Homebrew gcc 5.2.0) 5.2.0 Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. getCompilerVersion: /usr/local/opt/open-mpi/bin/mpicxx g++-5 (Homebrew gcc 5.2.0) 5.2.0 Executing: /usr/local/opt/open-mpi/bin/mpicxx -show stdout: g++-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_cxx -lmpi Executing: g++-5 --help stdout: Usage: g++-5 [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by g++-5. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /usr/local/opt/open-mpi/bin/mpicxx -show stdout: g++-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_cxx -lmpi Executing: /usr/local/opt/open-mpi/bin/mpif90 --version stdout: GNU Fortran (Homebrew gcc 5.2.0) 5.2.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING getCompilerVersion: /usr/local/opt/open-mpi/bin/mpif90 GNU Fortran (Homebrew gcc 5.2.0) 5.2.0 Executing: /usr/local/opt/open-mpi/bin/mpif90 -show stdout: /usr/local/bin/gfortran -I/usr/local/Cellar/open-mpi/1.8.6/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi Executing: /usr/local/bin/gfortran --help stdout: Usage: gfortran [options] file... Options: -pass-exit-codes Exit with highest error code from a phase --help Display this information --target-help Display target specific command line options --help={common|optimizers|params|target|warnings|[^]{joined|separate|undocumented}}[,...] Display specific types of command line options (Use '-v --help' to display command line options of sub-processes) --version Display compiler version information -dumpspecs Display all of the built in spec strings -dumpversion Display the version of the compiler -dumpmachine Display the compiler's target processor -print-search-dirs Display the directories in the compiler's search path -print-libgcc-file-name Display the name of the compiler's companion library -print-file-name= Display the full path to library -print-prog-name= Display the full path to compiler component -print-multiarch Display the target's normalized GNU triplet, used as a component in the library path -print-multi-directory Display the root directory for versions of libgcc -print-multi-lib Display the mapping between command line options and multiple library search directories -print-multi-os-directory Display the relative path to OS libraries -print-sysroot Display the target libraries directory -print-sysroot-headers-suffix Display the sysroot suffix used to find headers -Wa, Pass comma-separated on to the assembler -Wp, Pass comma-separated on to the preprocessor -Wl, Pass comma-separated on to the linker -Xassembler Pass on to the assembler -Xpreprocessor Pass on to the preprocessor -Xlinker Pass on to the linker -save-temps Do not delete intermediate files -save-temps= Do not delete intermediate files -no-canonical-prefixes Do not canonicalize paths when building relative prefixes to other gcc components -pipe Use pipes rather than intermediate files -time Time the execution of each subprocess -specs= Override built-in specs with the contents of -std= Assume that the input sources are for --sysroot= Use as the root directory for headers and libraries -B Add to the compiler's search paths -v Display the programs invoked by the compiler -### Like -v but options quoted and commands not executed -E Preprocess only; do not compile, assemble or link -S Compile only; do not assemble or link -c Compile and assemble, but do not link -o Place the output into -pie Create a position independent executable -shared Create a shared library -x Specify the language of the following input files Permissible languages include: c c++ assembler none 'none' means revert to the default behavior of guessing the language based on the file's extension Options starting with -g, -f, -m, -O, -W, or --param are automatically passed on to the various sub-processes invoked by gfortran. In order to pass other options on to these processes the -W options must be used. For bug reporting instructions, please see: . Executing: /usr/local/bin/gfortran --version stdout: GNU Fortran (Homebrew gcc 5.2.0) 5.2.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: /usr/local/bin/gfortran --version stdout: GNU Fortran (Homebrew gcc 5.2.0) 5.2.0 Copyright (C) 2015 Free Software Foundation, Inc. GNU Fortran comes with NO WARRANTY, to the extent permitted by law. You may redistribute copies of GNU Fortran under the terms of the GNU General Public License. For more information about these matters, see the file named COPYING Executing: /usr/local/opt/open-mpi/bin/mpif90 -show stdout: /usr/local/bin/gfortran -I/usr/local/Cellar/open-mpi/1.8.6/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi ================================================================================ TEST configureDebugging from PETSc.options.debugging(/Users/justin/Software/petsc/config/PETSc/options/debugging.py:25) TESTING: configureDebugging from PETSc.options.debugging(config/PETSc/options/debugging.py:25) Defined "USE_ERRORCHECKING" to "1" =============================================================================== WARNING! Compiling PETSc with no debugging, this should only be done for timing and production runs. All development should be done when configured using --with-debugging=1 =============================================================================== ================================================================================ TEST checkRestrict from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c:5:18: warning: unused variable 'x' [-Wunused-variable] float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } compilers: Set C restrict keyword to restrict Defined "C_RESTRICT" to "restrict" Popping language C ================================================================================ TEST checkCFormatting from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:313) TESTING: checkCFormatting from config.compilers(config/BuildSystem/config/compilers.py:313) Activate format string checking if using the GNU compilers ================================================================================ TEST checkCStaticInline from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:108) TESTING: checkCStaticInline from config.compilers(config/BuildSystem/config/compilers.py:108) Check for C keyword: static inline Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set C StaticInline keyword to static inline Popping language C Defined "C_STATIC_INLINE" to "static inline" ================================================================================ TEST checkDynamicLoadFlag from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:324) TESTING: checkDynamicLoadFlag from config.compilers(config/BuildSystem/config/compilers.py:324) Checks that dlopen() takes RTLD_XXX, and defines PETSC_HAVE_RTLD_XXX if it does Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LAZY); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LAZY" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_NOW); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_NOW" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_LOCAL); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_LOCAL" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include char *libname; int main() { dlopen(libname, RTLD_GLOBAL); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -ldl Defined "HAVE_RTLD_GLOBAL" to "1" ================================================================================ TEST checkCLibraries from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:164) TESTING: checkCLibraries from config.compilers(config/BuildSystem/config/compilers.py:164) Determines the libraries needed to link with C Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=/usr/local/bin/gcc-5 COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper Target: x86_64-apple-darwin14.4.0 Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib Thread model: posix gcc version 5.2.0 (Homebrew gcc 5.2.0) COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.10.4' '-o' '/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O3' '-I' '/usr/local/Cellar/open-mpi/1.8.6/include' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-mtune=core2' /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -lmpi -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 5.2.0 /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -lmpi -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-242.2 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 x86_64h armv6m armv7m armv7em Library search paths: /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /usr/bin/nm -n /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o Popping language C compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/local/bin/gcc-5 compilers: Unknown arg COLLECT_GCC=/usr/local/bin/gcc-5 compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin14.4.0 compilers: Unknown arg x86_64-apple-darwin14.4.0 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --build=x86_64-apple-darwin14.4.0 compilers: Unknown arg --build=x86_64-apple-darwin14.4.0 compilers: Checking arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Unknown arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Checking arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Checking arg --program-suffix=-5 compilers: Unknown arg --program-suffix=-5 compilers: Checking arg --with-gmp=/usr/local/opt/gmp compilers: Unknown arg --with-gmp=/usr/local/opt/gmp compilers: Checking arg --with-mpfr=/usr/local/opt/mpfr compilers: Unknown arg --with-mpfr=/usr/local/opt/mpfr compilers: Checking arg --with-mpc=/usr/local/opt/libmpc compilers: Unknown arg --with-mpc=/usr/local/opt/libmpc compilers: Checking arg --with-isl=/usr/local/opt/isl compilers: Unknown arg --with-isl=/usr/local/opt/isl compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-stage1-checking compilers: Unknown arg --enable-stage1-checking compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-lto compilers: Unknown arg --enable-lto compilers: Checking arg --with-build-config=bootstrap-debug compilers: Unknown arg --with-build-config=bootstrap-debug compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Unknown arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg (Homebrew compilers: Unknown arg (Homebrew compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg 5.2.0) compilers: Unknown arg 5.2.0) compilers: Checking arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Unknown arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Checking arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Found library directory: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Found library directory: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -lmpi compilers: Found library : -lmpi compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Found library : -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Found library : -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Found library directory: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Found library directory: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -lmpi compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-242.2 compilers: Unknown arg PROJECT:ld64-242.2 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Frameworks/ compilers: Unknown arg /Library/Frameworks/ compilers: Checking arg /System/Library/Frameworks/ compilers: Unknown arg /System/Library/Frameworks/ compilers: Checking arg /usr/bin/nm compilers: Unknown arg /usr/bin/nm compilers: Checking arg -n compilers: Unknown arg -n compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Libraries needed to link C code with another linker: ['-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-lmpi', '-lSystem', '-lgcc_ext.10.5', '-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5'] compilers: Check that C libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkDependencyGenerationFlag from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1354) TESTING: checkDependencyGenerationFlag from config.compilers(config/BuildSystem/config/compilers.py:1354) Check if -MMD works for dependency generation, and add it if it does Trying C compiler flag -MMD -MP Defined make macro "C_DEPFLAGS" to "-MMD -MP" Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -MMD -MP /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language C Trying Cxx compiler flag -MMD -MP Defined make macro "CXX_DEPFLAGS" to "-MMD -MP" Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -MMD -MP /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Popping language Cxx Trying FC compiler flag -MMD -MP Defined make macro "FC_DEPFLAGS" to "-MMD -MP" Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -MMD -MP /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Popping language FC ================================================================================ TEST checkC99Flag from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1400) TESTING: checkC99Flag from config.compilers(config/BuildSystem/config/compilers.py:1400) Check for -std=c99 or equivalent flag Accepted C99 compile flag: Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c:6:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] int x[2],y; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { int x[2],y; y = 5; // c++ comment int j = 2; for (int i=0; i<2; i++){ x[i] = i*j*y; } ; return 0; } Popping language C ================================================================================ TEST checkRestrict from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:137) TESTING: checkRestrict from config.compilers(config/BuildSystem/config/compilers.py:137) Check for the C/CXX restrict keyword Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc: In function 'int main()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc:5:18: error: expected initializer before 'x' float * restrict x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * restrict x;; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc: In function 'int main()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc:5:23: warning: unused variable 'x' [-Wunused-variable] float * __restrict__ x;; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { float * __restrict__ x;; return 0; } compilers: Set Cxx restrict keyword to __restrict__ Defined "CXX_RESTRICT" to " __restrict__" Popping language Cxx ================================================================================ TEST checkCxxNamespace from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:364) TESTING: checkCxxNamespace from config.compilers(config/BuildSystem/config/compilers.py:364) Checks that C++ compiler supports namespaces, and if it does defines HAVE_CXX_NAMESPACE Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" namespace petsc {int dummy;} int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" template struct a {}; namespace trouble{ template struct a : public ::a {}; } trouble::a uugh; int main() { ; return 0; } Popping language Cxx compilers: C++ has namespaces Defined "HAVE_CXX_NAMESPACE" to "1" ================================================================================ TEST checkCxxOptionalExtensions from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:337) TESTING: checkCxxOptionalExtensions from config.compilers(config/BuildSystem/config/compilers.py:337) Check whether the C++ compiler (IBM xlC, OSF5) need special flag for .c files which contain C++ Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { class somename { int i; };; return 0; } Added Cxx compiler flag Popping language Cxx ================================================================================ TEST checkCxxStaticInline from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:122) TESTING: checkCxxStaticInline from config.compilers(config/BuildSystem/config/compilers.py:122) Check for C++ keyword: static inline Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" static inline int foo(int a) {return a;} int main() { foo(1);; return 0; } compilers: Set Cxx StaticInline keyword to static inline Popping language Cxx Defined "CXX_STATIC_INLINE" to "static inline" ================================================================================ TEST checkCxxLibraries from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:422) TESTING: checkCxxLibraries from config.compilers(config/BuildSystem/config/compilers.py:422) Determines the libraries needed to link with C++ Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: stderr: Using built-in specs. COLLECT_GCC=/usr/local/bin/g++-5 COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper Target: x86_64-apple-darwin14.4.0 Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib Thread model: posix gcc version 5.2.0 (Homebrew gcc 5.2.0) COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.10.4' '-o' '/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest' '-v' '-Wall' '-Wwrite-strings' '-Wno-strict-aliasing' '-Wno-unknown-pragmas' '-O' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-I' '/usr/local/Cellar/open-mpi/1.8.6/include' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-shared-libgcc' '-mtune=core2' /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lmpi -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 5.2.0 /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lmpi -lstdc++ -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-242.2 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 x86_64h armv6m armv7m armv7em Library search paths: /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /usr/bin/nm -n /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o Popping language Cxx compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/local/bin/g++-5 compilers: Unknown arg COLLECT_GCC=/usr/local/bin/g++-5 compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin14.4.0 compilers: Unknown arg x86_64-apple-darwin14.4.0 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --build=x86_64-apple-darwin14.4.0 compilers: Unknown arg --build=x86_64-apple-darwin14.4.0 compilers: Checking arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Unknown arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Checking arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Checking arg --program-suffix=-5 compilers: Unknown arg --program-suffix=-5 compilers: Checking arg --with-gmp=/usr/local/opt/gmp compilers: Unknown arg --with-gmp=/usr/local/opt/gmp compilers: Checking arg --with-mpfr=/usr/local/opt/mpfr compilers: Unknown arg --with-mpfr=/usr/local/opt/mpfr compilers: Checking arg --with-mpc=/usr/local/opt/libmpc compilers: Unknown arg --with-mpc=/usr/local/opt/libmpc compilers: Checking arg --with-isl=/usr/local/opt/isl compilers: Unknown arg --with-isl=/usr/local/opt/isl compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-stage1-checking compilers: Unknown arg --enable-stage1-checking compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-lto compilers: Unknown arg --enable-lto compilers: Checking arg --with-build-config=bootstrap-debug compilers: Unknown arg --with-build-config=bootstrap-debug compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Unknown arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg (Homebrew compilers: Unknown arg (Homebrew compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg 5.2.0) compilers: Unknown arg 5.2.0) compilers: Checking arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Unknown arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Checking arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Unknown arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Found library directory: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Found library directory: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/opt/libevent/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in C++ compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in C++ compilers: Checking arg -lgcc_ext.10.5 compilers: Found library: -lgcc_ext.10.5 Library already in C list so skipping in C++ compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi_cxx compilers: Found library: -lmpi_cxx compilers: Checking arg -lmpi compilers: Checking arg -lstdc++ compilers: Found library: -lstdc++ compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi compilers: Checking arg -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -rpath compilers: Already in rpathflags, skipping:-rpath compilers: Checking arg -lmpi_cxx compilers: Checking arg -lmpi compilers: Checking arg -lstdc++ compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Skipping system library: -lgcc compilers: Checking arg -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-242.2 compilers: Unknown arg PROJECT:ld64-242.2 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Frameworks/ compilers: Unknown arg /Library/Frameworks/ compilers: Checking arg /System/Library/Frameworks/ compilers: Unknown arg /System/Library/Frameworks/ compilers: Checking arg /usr/bin/nm compilers: Unknown arg /usr/bin/nm compilers: Checking arg -n compilers: Unknown arg -n compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Libraries needed to link Cxx code with another linker: ['-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-Wl,-rpath,/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-lmpi_cxx', '-lstdc++'] compilers: Check that Cxx libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language C compilers: Check that Cxx libraries can be used from Fortran Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Popping language FC Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main end Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi_cxx -lstdc++ -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language FC ================================================================================ TEST checkCxx11 from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:379) TESTING: checkCxx11 from config.compilers(config/BuildSystem/config/compilers.py:379) Determine the option needed to support the C++11 dialect We auto-detect C++11 if the compiler supports it without options, otherwise we require with-cxx-dialect=C++11 to try adding flags to support it. Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: In file included from /usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/random:35:0, from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:4: /usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:11: warning: identifier 'constexpr' is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:32: error: 'constexpr' does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:32: note: C++11 'constexpr' only available with -std=c++11 or -std=gnu++11 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc: In function 'int main()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:10:11: error: 'random_device' is not a member of 'std' std::random_device rd; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:11:11: error: 'mt19937' is not a member of 'std' std::mt19937 mt(rd()); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:12:11: error: 'normal_distribution' is not a member of 'std' std::normal_distribution dist(0,1); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before 'double' std::normal_distribution dist(0,1); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:33: error: 'mt' was not declared in this scope const double x = dist(mt); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:35: error: 'dist' was not declared in this scope const double x = dist(mt); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:24: warning: unused variable 'x' [-Wunused-variable] const double x = dist(mt); ^ Source: #include "confdefs.h" #include "conffix.h" #include template constexpr T Cubed( T x ) { return x*x*x; } int main() { std::random_device rd; std::mt19937 mt(rd()); std::normal_distribution dist(0,1); const double x = dist(mt); ; return 0; } Rejecting compiler flag due to nonzero status from link Rejecting compiler flag due to In file included from /usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/random:35:0, from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:4: /usr/local/Cellar/gcc/5.2.0/include/c++/5.2.0/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support is currently experimental, and must be enabled with the -std=c++11 or -std=gnu++11 compiler options. #error This file requires compiler and library support for the \ ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:11: warning: identifier 'constexpr' is a keyword in C++11 [-Wc++0x-compat] template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:32: error: 'constexpr' does not name a type template constexpr T Cubed( T x ) { return x*x*x; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:5:32: note: C++11 'constexpr' only available with -std=c++11 or -std=gnu++11 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc: In function 'int main()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:10:11: error: 'random_device' is not a member of 'std' std::random_device rd; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:11:11: error: 'mt19937' is not a member of 'std' std::mt19937 mt(rd()); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:12:11: error: 'normal_distribution' is not a member of 'std' std::normal_distribution dist(0,1); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:12:36: error: expected primary-expression before 'double' std::normal_distribution dist(0,1); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:33: error: 'mt' was not declared in this scope const double x = dist(mt); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:35: error: 'dist' was not declared in this scope const double x = dist(mt); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc:13:24: warning: unused variable 'x' [-Wunused-variable] const double x = dist(mt); ^ PETSc Error: No output file produced Popping language Cxx ================================================================================ TEST checkFortranTypeSizes from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:585) TESTING: checkFortranTypeSizes from config.compilers(config/BuildSystem/config/compilers.py:585) Check whether real*8 is supported and suggest flags which will allow support Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main real*8 variable end Popping language FC ================================================================================ TEST checkFortranNameMangling from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:644) TESTING: checkFortranNameMangling from config.compilers(config/BuildSystem/config/compilers.py:644) Checks Fortran name mangling, and defines HAVE_FORTRAN_UNDERSCORE, HAVE_FORTRAN_NOUNDERSCORE, HAVE_FORTRAN_CAPS, or HAVE_FORTRAN_STDCALL Testing Fortran mangling type underscore with code void d1chk_(void){return;} Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1chk_(void){return;} Popping language C Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confc.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language FC compilers: Fortran name mangling is underscore Defined "HAVE_FORTRAN_UNDERSCORE" to "1" ================================================================================ TEST checkFortranNameManglingDouble from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:681) TESTING: checkFortranNameManglingDouble from config.compilers(config/BuildSystem/config/compilers.py:681) Checks if symbols containing an underscore append an extra underscore, and defines HAVE_FORTRAN_UNDERSCORE_UNDERSCORE if necessary Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void d1_chk__(void){return;} Popping language C Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main call d1_chk() end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confc.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_d1_chk_", referenced from: _main in conftest.o (maybe you meant: _d1_chk__) ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language FC ================================================================================ TEST checkFortranPreprocessor from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:691) TESTING: checkFortranPreprocessor from config.compilers(config/BuildSystem/config/compilers.py:691) Determine if Fortran handles preprocessing properly compilers: Fortran uses CPP preprocessor ================================================================================ TEST checkFortranDefineCompilerOption from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:714) TESTING: checkFortranDefineCompilerOption from config.compilers(config/BuildSystem/config/compilers.py:714) Check if -WF,-Dfoobar or -Dfoobar is the compiler option to define a macro Defined make macro "FC_DEFINE_FLAG" to "-D" Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -DTesting /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.F Successful compile: Source: program main #define dummy dummy #ifndef Testing fooey #endif end Popping language FC compilers: Fortran uses -D for defining macro ================================================================================ TEST checkFortranLibraries from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:734) TESTING: checkFortranLibraries from config.compilers(config/BuildSystem/config/compilers.py:734) Substitutes for FLIBS the libraries needed to link with Fortran This macro is intended to be used in those situations when it is necessary to mix, e.g. C++ and Fortran 77, source code into a single program or shared library. For example, if object files from a C++ and Fortran 77 compiler must be linked together, then the C++ compiler/linker must be used for linking (since special C++-ish things need to happen at link time like calling global constructors, instantiating templates, enabling exception support, etc.). However, the Fortran 77 intrinsic and run-time libraries must be linked in as well, but the C++ compiler/linker does not know how to add these Fortran 77 libraries. This code was translated from the autoconf macro which was packaged in its current form by Matthew D. Langston . However, nearly all of this macro came from the OCTAVE_FLIBS macro in octave-2.0.13/aclocal.m4, and full credit should go to John W. Eaton for writing this extremely useful macro. Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -V Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: stderr: Driving: /usr/local/bin/gfortran -mmacosx-version-min=10.10.4 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -v -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -I/usr/local/Cellar/open-mpi/1.8.6/include -Wl,-flat_namespace -Wl,-commons,use_dylibs -I/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -l gfortran -shared-libgcc Using built-in specs. COLLECT_GCC=/usr/local/bin/gfortran COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper Target: x86_64-apple-darwin14.4.0 Configured with: ../configure --build=x86_64-apple-darwin14.4.0 --prefix=/usr/local/Cellar/gcc/5.2.0 --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 --enable-languages=c,c++,objc,obj-c++,fortran --program-suffix=-5 --with-gmp=/usr/local/opt/gmp --with-mpfr=/usr/local/opt/mpfr --with-mpc=/usr/local/opt/libmpc --with-isl=/usr/local/opt/isl --with-system-zlib --enable-libstdcxx-time=yes --enable-stage1-checking --enable-checking=release --enable-lto --with-build-config=bootstrap-debug --disable-werror --with-pkgversion='Homebrew gcc 5.2.0' --with-bugurl=https://github.com/Homebrew/homebrew/issues --enable-plugin --disable-nls --enable-multilib Thread model: posix gcc version 5.2.0 (Homebrew gcc 5.2.0) Reading specs from /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../libgfortran.spec rename spec lib to liborig COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.10.4' '-o' '/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-I' '/usr/local/Cellar/open-mpi/1.8.6/include' '-I' '/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-shared-libgcc' '-mtune=core2' COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ COLLECT_GCC_OPTIONS='-mmacosx-version-min=10.10.4' '-o' '/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest' '-v' '-fPIC' '-Wall' '-Wno-unused-variable' '-ffree-line-length-0' '-Wno-unused-dummy-argument' '-O' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0' '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5' '-I' '/usr/local/Cellar/open-mpi/1.8.6/include' '-I' '/usr/local/Cellar/open-mpi/1.8.6/lib' '-L/usr/local/opt/libevent/lib' '-L/usr/local/Cellar/open-mpi/1.8.6/lib' '-shared-libgcc' '-mtune=core2' /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v collect2 version 5.2.0 /usr/bin/ld -dynamic -arch x86_64 -macosx_version_min 10.10.4 -weak_reference_mismatches non-weak -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -multiply_defined suppress -multiply_defined suppress -commons use_dylibs -search_paths_first /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -rpath /usr/local/opt/libevent/lib -rpath /usr/local/Cellar/open-mpi/1.8.6/lib -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -rpath /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -flat_namespace -commons use_dylibs -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -no_compact_unwind -lSystem -lgcc_ext.10.5 -lgcc -lquadmath -lm -lgcc_ext.10.5 -lgcc -lSystem -v @(#)PROGRAM:ld PROJECT:ld64-242.2 configured to support archs: armv6 armv7 armv7s arm64 i386 x86_64 x86_64h armv6m armv7m armv7em Library search paths: /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/local/opt/libevent/lib /usr/local/Cellar/open-mpi/1.8.6/lib /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /usr/lib /usr/local/lib Framework search paths: /Library/Frameworks/ /System/Library/Frameworks/ /usr/bin/nm -n /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o Popping language FC compilers: Checking arg Driving: compilers: Unknown arg Driving: compilers: Checking arg /usr/local/bin/gfortran compilers: Unknown arg /usr/local/bin/gfortran compilers: Checking arg -mmacosx-version-min=10.10.4 compilers: Unknown arg -mmacosx-version-min=10.10.4 compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg -Wl,-multiply_defined,suppress compilers: Unknown arg -Wl,-multiply_defined,suppress compilers: Checking arg -Wl,-multiply_defined compilers: Unknown arg -Wl,-multiply_defined compilers: Checking arg -Wl,suppress compilers: Unknown arg -Wl,suppress compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -Wl,-search_paths_first compilers: Unknown arg -Wl,-search_paths_first compilers: Checking arg -fPIC compilers: Unknown arg -fPIC compilers: Checking arg -Wall compilers: Unknown arg -Wall compilers: Checking arg -Wno-unused-variable compilers: Unknown arg -Wno-unused-variable compilers: Checking arg -ffree-line-length-0 compilers: Unknown arg -ffree-line-length-0 compilers: Checking arg -Wno-unused-dummy-argument compilers: Unknown arg -Wno-unused-dummy-argument compilers: Checking arg -O compilers: Unknown arg -O compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -Wl,-rpath,/usr/local/opt/libevent/lib compilers: Unknown arg -Wl,-rpath,/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Found library directory: -L/usr/local/opt/libevent/lib compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Found library directory: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Found library directory: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -lmpi compilers: Found library: -lmpi Library already in C list so skipping in Fortran compilers: Checking arg -lSystem compilers: Found library: -lSystem Library already in C list so skipping in Fortran compilers: Checking arg -lgcc_ext.10.5 compilers: Found library: -lgcc_ext.10.5 Library already in C list so skipping in Fortran compilers: Checking arg -Wl,-rpath,/usr/local/opt/libevent/lib compilers: Unknown arg -Wl,-rpath,/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -ldl compilers: Found library: -ldl compilers: Checking arg -I/usr/local/Cellar/open-mpi/1.8.6/include compilers: Found include directory: /usr/local/Cellar/open-mpi/1.8.6/include compilers: Checking arg -Wl,-flat_namespace compilers: Unknown arg -Wl,-flat_namespace compilers: Checking arg -Wl,-commons,use_dylibs compilers: Unknown arg -Wl,-commons,use_dylibs compilers: Checking arg -I/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Found include directory: /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -lmpi_usempif08 compilers: Found library: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Found library: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Found library: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -l compilers: Found canonical library: -lgfortran compilers: Checking arg -shared-libgcc compilers: Unknown arg -shared-libgcc compilers: Checking arg Using compilers: Unknown arg Using compilers: Checking arg built-in compilers: Unknown arg built-in compilers: Checking arg specs. compilers: Unknown arg specs. compilers: Checking arg COLLECT_GCC=/usr/local/bin/gfortran compilers: Unknown arg COLLECT_GCC=/usr/local/bin/gfortran compilers: Checking arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Unknown arg COLLECT_LTO_WRAPPER=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/lto-wrapper compilers: Checking arg Target: compilers: Unknown arg Target: compilers: Checking arg x86_64-apple-darwin14.4.0 compilers: Unknown arg x86_64-apple-darwin14.4.0 compilers: Checking arg Configured compilers: Unknown arg Configured compilers: Checking arg with: compilers: Unknown arg with: compilers: Checking arg ../configure compilers: Unknown arg ../configure compilers: Checking arg --build=x86_64-apple-darwin14.4.0 compilers: Unknown arg --build=x86_64-apple-darwin14.4.0 compilers: Checking arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Unknown arg --prefix=/usr/local/Cellar/gcc/5.2.0 compilers: Checking arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg --libdir=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Unknown arg --enable-languages=c,c++,objc,obj-c++,fortran compilers: Checking arg --program-suffix=-5 compilers: Unknown arg --program-suffix=-5 compilers: Checking arg --with-gmp=/usr/local/opt/gmp compilers: Unknown arg --with-gmp=/usr/local/opt/gmp compilers: Checking arg --with-mpfr=/usr/local/opt/mpfr compilers: Unknown arg --with-mpfr=/usr/local/opt/mpfr compilers: Checking arg --with-mpc=/usr/local/opt/libmpc compilers: Unknown arg --with-mpc=/usr/local/opt/libmpc compilers: Checking arg --with-isl=/usr/local/opt/isl compilers: Unknown arg --with-isl=/usr/local/opt/isl compilers: Checking arg --with-system-zlib compilers: Unknown arg --with-system-zlib compilers: Checking arg --enable-libstdcxx-time=yes compilers: Unknown arg --enable-libstdcxx-time=yes compilers: Checking arg --enable-stage1-checking compilers: Unknown arg --enable-stage1-checking compilers: Checking arg --enable-checking=release compilers: Unknown arg --enable-checking=release compilers: Checking arg --enable-lto compilers: Unknown arg --enable-lto compilers: Checking arg --with-build-config=bootstrap-debug compilers: Unknown arg --with-build-config=bootstrap-debug compilers: Checking arg --disable-werror compilers: Unknown arg --disable-werror compilers: Checking arg --with-pkgversion= compilers: Unknown arg --with-pkgversion= compilers: Checking arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Unknown arg --with-bugurl=https://github.com/Homebrew/homebrew/issues compilers: Checking arg --enable-plugin compilers: Unknown arg --enable-plugin compilers: Checking arg --disable-nls compilers: Unknown arg --disable-nls compilers: Checking arg --enable-multilib compilers: Unknown arg --enable-multilib compilers: Checking arg Thread compilers: Unknown arg Thread compilers: Checking arg model: compilers: Unknown arg model: compilers: Checking arg posix compilers: Unknown arg posix compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg (Homebrew compilers: Unknown arg (Homebrew compilers: Checking arg gcc compilers: Unknown arg gcc compilers: Checking arg 5.2.0) compilers: Unknown arg 5.2.0) compilers: Checking arg Reading compilers: Unknown arg Reading compilers: Checking arg specs compilers: Unknown arg specs compilers: Checking arg from compilers: Unknown arg from compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../libgfortran.spec compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../libgfortran.spec compilers: Checking arg rename compilers: Unknown arg rename compilers: Checking arg spec compilers: Unknown arg spec compilers: Checking arg lib compilers: Unknown arg lib compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg liborig compilers: Unknown arg liborig compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Skipping arg COMPILER_PATH=/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/ compilers: Checking arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Skipping arg LIBRARY_PATH=/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/:/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../../:/usr/lib/ compilers: Checking arg COLLECT_GCC_OPTIONS= compilers: Unknown arg COLLECT_GCC_OPTIONS= compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/libexec/gcc/x86_64-apple-darwin14.4.0/5.2.0/collect2 compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/opt/libevent/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -rpath compilers: Found -rpath library: /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Found library: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Found library: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg collect2 compilers: Unknown arg collect2 compilers: Checking arg version compilers: Unknown arg version compilers: Checking arg 5.2.0 compilers: Unknown arg 5.2.0 compilers: Checking arg /usr/bin/ld compilers: Unknown arg /usr/bin/ld compilers: Checking arg -dynamic compilers: Unknown arg -dynamic compilers: Checking arg -arch compilers: Unknown arg -arch compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg -macosx_version_min compilers: Unknown arg -macosx_version_min compilers: Checking arg 10.10.4 compilers: Unknown arg 10.10.4 compilers: Checking arg -weak_reference_mismatches compilers: Unknown arg -weak_reference_mismatches compilers: Checking arg non-weak compilers: Unknown arg non-weak compilers: Checking arg -o compilers: Unknown arg -o compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Already in lflags so skipping: -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Already in lflags so skipping: -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. compilers: Already in lflags so skipping: -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -multiply_defined compilers: Unknown arg -multiply_defined compilers: Checking arg suppress compilers: Unknown arg suppress compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -search_paths_first compilers: Unknown arg -search_paths_first compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -rpath compilers: Already in rpathflags so skipping: -rpath compilers: Checking arg -flat_namespace compilers: Unknown arg -flat_namespace compilers: Checking arg -commons compilers: Unknown arg -commons compilers: Checking arg use_dylibs compilers: Unknown arg use_dylibs compilers: Checking arg -lmpi_usempif08 compilers: Already in lflags: -lmpi_usempif08 compilers: Checking arg -lmpi_usempi_ignore_tkr compilers: Already in lflags: -lmpi_usempi_ignore_tkr compilers: Checking arg -lmpi_mpifh compilers: Already in lflags: -lmpi_mpifh compilers: Checking arg -lmpi compilers: Already in lflags: -lmpi compilers: Checking arg -lgfortran compilers: Already in lflags: -lgfortran compilers: Checking arg -no_compact_unwind compilers: Unknown arg -no_compact_unwind compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lquadmath compilers: Already in lflags: -lquadmath compilers: Checking arg -lm compilers: Found library: -lm compilers: Checking arg -lgcc_ext.10.5 compilers: Already in lflags: -lgcc_ext.10.5 compilers: Checking arg -lgcc compilers: Found system library therefor skipping: -lgcc compilers: Checking arg -lSystem compilers: Already in lflags: -lSystem compilers: Checking arg -v compilers: Unknown arg -v compilers: Checking arg @(#)PROGRAM:ld compilers: Unknown arg @(#)PROGRAM:ld compilers: Checking arg PROJECT:ld64-242.2 compilers: Unknown arg PROJECT:ld64-242.2 compilers: Checking arg configured compilers: Unknown arg configured compilers: Checking arg to compilers: Unknown arg to compilers: Checking arg support compilers: Unknown arg support compilers: Checking arg archs: compilers: Unknown arg archs: compilers: Checking arg armv6 compilers: Unknown arg armv6 compilers: Checking arg armv7 compilers: Unknown arg armv7 compilers: Checking arg armv7s compilers: Unknown arg armv7s compilers: Checking arg arm64 compilers: Unknown arg arm64 compilers: Checking arg i386 compilers: Unknown arg i386 compilers: Checking arg x86_64 compilers: Unknown arg x86_64 compilers: Checking arg x86_64h compilers: Unknown arg x86_64h compilers: Checking arg armv6m compilers: Unknown arg armv6m compilers: Checking arg armv7m compilers: Unknown arg armv7m compilers: Checking arg armv7em compilers: Unknown arg armv7em compilers: Checking arg Library compilers: Unknown arg Library compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/local/opt/libevent/lib compilers: Unknown arg /usr/local/opt/libevent/lib compilers: Checking arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Unknown arg /usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 compilers: Checking arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Unknown arg /usr/local/Cellar/gcc/5.2.0/lib/gcc/5 compilers: Checking arg /usr/lib compilers: Unknown arg /usr/lib compilers: Checking arg /usr/local/lib compilers: Unknown arg /usr/local/lib compilers: Checking arg Framework compilers: Unknown arg Framework compilers: Checking arg search compilers: Unknown arg search compilers: Checking arg paths: compilers: Unknown arg paths: compilers: Checking arg /Library/Frameworks/ compilers: Unknown arg /Library/Frameworks/ compilers: Checking arg /System/Library/Frameworks/ compilers: Unknown arg /System/Library/Frameworks/ compilers: Checking arg /usr/bin/nm compilers: Unknown arg /usr/bin/nm compilers: Checking arg -n compilers: Unknown arg -n compilers: Checking arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Unknown arg /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o compilers: Libraries needed to link Fortran code with the C linker: ['-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-ldl', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-Wl,-rpath,/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-lgfortran', '-lquadmath', '-lm', '-lm'] compilers: Libraries needed to link Fortran main with the C linker: [] compilers: Check that Fortran libraries can be used from C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language C compilers: Check that Fortran libraries can be used from C++ Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX Pushing language CXX Popping language CXX compilers: Fortran libraries can be used from C++ Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lpetsc-ufod4vtr9mqHvKIQiVAm Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lpetsc-ufod4vtr9mqHvKIQiVAm collect2: error: ld returned 1 exit status Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers/conftest Popping language Cxx ================================================================================ TEST checkFortranLinkingCxx from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1088) TESTING: checkFortranLinkingCxx from config.compilers(config/BuildSystem/config/compilers.py:1088) Check that Fortran can be linked against C++ Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void foo(void){d1chk_();} Popping language Cxx Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" extern "C" void d1chk_(void); void d1chk_(void){return;} Popping language Cxx Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main call d1chk() end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/cxxobj.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confc.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language FC compilers: Fortran can link C++ functions ================================================================================ TEST checkFortran90 from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1123) TESTING: checkFortran90 from config.compilers(config/BuildSystem/config/compilers.py:1123) Determine whether the Fortran compiler handles F90 Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main INTEGER, PARAMETER :: int = SELECTED_INT_KIND(8) INTEGER (KIND=int) :: ierr ierr = 1 end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "USING_F90" to "1" Fortran compiler supports F90 Popping language FC ================================================================================ TEST checkFortran2003 from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1136) TESTING: checkFortran2003 from config.compilers(config/BuildSystem/config/compilers.py:1136) Determine whether the Fortran compiler handles F2003 Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main use,intrinsic :: iso_c_binding Type(C_Ptr),Dimension(:),Pointer :: CArray character(kind=c_char),pointer :: nullc => null() character(kind=c_char,len=5),dimension(:),pointer::list1 allocate(list1(5)) CArray = (/(c_loc(list1(i)),i=1,5),c_loc(nullc)/) end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "USING_F2003" to "1" Fortran compiler supports F2003 Popping language FC ================================================================================ TEST checkFortran90Array from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1156) TESTING: checkFortran90Array from config.compilers(config/BuildSystem/config/compilers.py:1156) Check for F90 array interfaces Executing: uname -s stdout: Darwin Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include void f90arraytest_(void* a1, void* a2,void* a3, void* i) { printf("arrays [%p %p %p]\n",a1,a2,a3); fflush(stdout); return; } void f90ptrtest_(void* a1, void* a2,void* a3, void* i, void* p1 ,void* p2, void* p3) { printf("arrays [%p %p %p]\n",a1,a2,a3); if ((p1 == p3) && (p1 != p2)) { printf("pointers match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); } else { printf("pointers do not match! [%p %p] [%p]\n",p1,p3,p2); fflush(stdout); exit(111); } return; } Popping language C Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main Interface Subroutine f90ptrtest(p1,p2,p3,i) integer, pointer :: p1(:,:) integer, pointer :: p2(:,:) integer, pointer :: p3(:,:) integer i End Subroutine End Interface integer, pointer :: ptr1(:,:),ptr2(:,:) integer, target :: array(6:8,9:21) integer in in = 25 ptr1 => array ptr2 => array call f90arraytest(ptr1,ptr2,ptr1,in) call f90ptrtest(ptr1,ptr2,ptr1,in) end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/fooobj.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest stdout: arrays [0x7fff5a0bc870 0x7fff5a0bc870 0x7fff5a0bc870] arrays [0x7fff5a0bc820 0x7fff5a0bc7d0 0x7fff5a0bc820] pointers do not match! [0x7fff5a0bc780 0x7fff5a0bc870] [0x7fff78e2d300] ERROR while running executable: Could not execute "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest": arrays [0x7fff5a0bc870 0x7fff5a0bc870 0x7fff5a0bc870] arrays [0x7fff5a0bc820 0x7fff5a0bc7d0 0x7fff5a0bc820] pointers do not match! [0x7fff5a0bc780 0x7fff5a0bc870] [0x7fff78e2d300] Popping language FC compilers: F90 uses a single argument for array pointers ================================================================================ TEST checkFortranModuleInclude from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1243) TESTING: checkFortranModuleInclude from config.compilers(config/BuildSystem/config/compilers.py:1243) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: program main use configtest write(*,*) testint end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/configtest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl compilers: Fortran module include flag -I found Popping language FC ================================================================================ TEST checkFortranModuleOutput from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1309) TESTING: checkFortranModuleOutput from config.compilers(config/BuildSystem/config/compilers.py:1309) Figures out what flag is used to specify the include path for Fortran modules Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -module /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option '-module' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module compile failed Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -module:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option '-module:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -module: compile failed Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -fmod=/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Possible ERROR while running compiler: exit code 256 stderr: gfortran: error: unrecognized command line option '-fmod=/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir' Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -fmod= compile failed Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -J/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/confdir -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers/conftest.F Successful compile: Source: module configtest integer testint parameter (testint = 42) end module configtest compilers: Fortran module output flag -J found Popping language FC ================================================================================ TEST setupFrameworkCompilers from config.compilers(/Users/justin/Software/petsc/config/BuildSystem/config/compilers.py:1467) TESTING: setupFrameworkCompilers from config.compilers(config/BuildSystem/config/compilers.py:1467) ================================================================================ TEST configureClosure from config.utilities.closure(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/closure.py:18) TESTING: configureClosure from config.utilities.closure(config/BuildSystem/config/utilities/closure.py:18) Determine if Apple ^close syntax is supported in C Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure/conftest.c:6:6: error: expected identifier or '(' before '^' token int (^closure)(int);; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int (^closure)(int);; return 0; } Compile failed inside link ================================================================================ TEST configureFortranCPP from PETSc.options.fortranCPP(/Users/justin/Software/petsc/config/PETSc/options/fortranCPP.py:27) TESTING: configureFortranCPP from PETSc.options.fortranCPP(config/PETSc/options/fortranCPP.py:27) Handle case where Fortran cannot preprocess properly Defined make rule ".f.o .f90.o .f95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} -o $@ $<'] Defined make rule ".f.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] Defined make rule ".F.o .F90.o .F95.o" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} -o $@ $<'] Defined make rule ".F.a" with dependencies "" and code ['${PETSC_MAKE_STOP_ON_ERROR}${FC} -c ${FC_FLAGS} ${FFLAGS} ${FCPPFLAGS} $<', '-${AR} ${AR_FLAGS} ${LIBNAME} $*.o', '-${RM} $*.o'] ================================================================================ TEST checkStdC from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:105) TESTING: checkStdC from config.headers(config/BuildSystem/config/headers.py:105) Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 64 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 65 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 66 "/usr/include/string.h" 2 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 103 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 115 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 129 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) ; char *strndup(const char *, size_t) ; size_t strnlen(const char *, size_t) ; char *strsignal(int sig); # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 142 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 143 "/usr/include/string.h" 2 3 4 errno_t memset_s(void *, rsize_t, int, rsize_t) ; # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 153 "/usr/include/string.h" 2 3 4 void *memmem(const void *, size_t, const void *, size_t) ; void memset_pattern4(void *, const void *, size_t) ; void memset_pattern8(void *, const void *, size_t) ; void memset_pattern16(void *, const void *, size_t) ; char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 67 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) ; int ffsll(long long) ; int fls(int) ; int flsl(long) ; int flsll(long long) ; # 1 "/usr/include/string.h" 1 3 4 # 93 "/usr/include/strings.h" 2 3 4 # 177 "/usr/include/string.h" 2 3 4 # 186 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 34 "/usr/include/secure/_string.h" 2 3 4 # 187 "/usr/include/string.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 31 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 76 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/_types/_ct_rune_t.h" 1 3 4 # 31 "/usr/include/sys/_types/_ct_rune_t.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; # 77 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_rune_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rune_t.h" 3 4 typedef __darwin_rune_t rune_t; # 78 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_wchar_t.h" 1 3 4 # 33 "/usr/include/sys/_types/_wchar_t.h" 3 4 typedef __darwin_wchar_t wchar_t; # 81 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 100 "/usr/include/stdlib.h" 2 3 4 # 117 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 127 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) ; void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ) ; size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 239 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 241 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 242 "/usr/include/stdlib.h" 2 3 4 u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) ; void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) ; char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated)); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) ; void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) ; void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #define ISLOWER(c) ('a' <= (c) && (c) <= 'z') #define TOUPPER(c) (ISLOWER(c) ? 'A' + ((c) - 'a') : (c)) #define XOR(e, f) (((e) && !(f)) || (!(e) && (f))) int main() { int i; for(i = 0; i < 256; i++) if (XOR(islower(i), ISLOWER(i)) || toupper(i) != TOUPPER(i)) exit(2); exit(0); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest Defined "STDC_HEADERS" to "1" ================================================================================ TEST checkStat from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:138) TESTING: checkStat from config.headers(config/BuildSystem/config/headers.py:138) Checks whether stat file-mode macros are broken, and defines STAT_MACROS_BROKEN if they are Source: #include "confdefs.h" #include "conffix.h" #include #include #if defined(S_ISBLK) && defined(S_IFDIR) # if S_ISBLK (S_IFDIR) You lose. # endif #endif #if defined(S_ISBLK) && defined(S_IFCHR) # if S_ISBLK (S_IFCHR) You lose. # endif #endif #if defined(S_ISLNK) && defined(S_IFREG) # if S_ISLNK (S_IFREG) You lose. # endif #endif #if defined(S_ISSOCK) && defined(S_IFREG) # if S_ISSOCK (S_IFREG) You lose. # endif #endif Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 5 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/stat.h" 1 3 4 # 75 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 76 "/usr/include/sys/stat.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 79 "/usr/include/sys/stat.h" 2 3 4 # 110 "/usr/include/sys/stat.h" 3 4 struct ostat { __uint16_t st_dev; ino_t st_ino; mode_t st_mode; nlink_t st_nlink; __uint16_t st_uid; __uint16_t st_gid; __uint16_t st_rdev; __int32_t st_size; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; __int32_t st_blksize; __int32_t st_blocks; __uint32_t st_flags; __uint32_t st_gen; }; # 182 "/usr/include/sys/stat.h" 3 4 struct stat { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 221 "/usr/include/sys/stat.h" 3 4 struct stat64 { dev_t st_dev; mode_t st_mode; nlink_t st_nlink; __darwin_ino64_t st_ino; uid_t st_uid; gid_t st_gid; dev_t st_rdev; struct timespec st_atimespec; struct timespec st_mtimespec; struct timespec st_ctimespec; struct timespec st_birthtimespec; off_t st_size; blkcnt_t st_blocks; blksize_t st_blksize; __uint32_t st_flags; __uint32_t st_gen; __int32_t st_lspare; __int64_t st_qspare[2]; }; # 241 "/usr/include/sys/stat.h" 3 4 # 1 "/usr/include/sys/_types/_s_ifmt.h" 1 3 4 # 242 "/usr/include/sys/stat.h" 2 3 4 # 349 "/usr/include/sys/stat.h" 3 4 int chmod(const char *, mode_t) __asm("_" "chmod" ); int fchmod(int, mode_t) __asm("_" "fchmod" ); int fstat(int, struct stat *) __asm("_" "fstat" "$INODE64"); int lstat(const char *, struct stat *) __asm("_" "lstat" "$INODE64"); int mkdir(const char *, mode_t); int mkfifo(const char *, mode_t); int stat(const char *, struct stat *) __asm("_" "stat" "$INODE64"); int mknod(const char *, mode_t, dev_t); mode_t umask(mode_t); int fchmodat(int, const char *, mode_t, int) ; int fstatat(int, const char *, struct stat *, int) __asm("_" "fstatat" "$INODE64") ; int mkdirat(int, const char *, mode_t) ; # 1 "/usr/include/sys/_types/_filesec_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_filesec_t.h" 3 4 struct _filesec; typedef struct _filesec *filesec_t; # 370 "/usr/include/sys/stat.h" 2 3 4 int chflags(const char *, __uint32_t); int chmodx_np(const char *, filesec_t); int fchflags(int, __uint32_t); int fchmodx_np(int, filesec_t); int fstatx_np(int, struct stat *, filesec_t) __asm("_" "fstatx_np" "$INODE64"); int lchflags(const char *, __uint32_t) ; int lchmod(const char *, mode_t) ; int lstatx_np(const char *, struct stat *, filesec_t) __asm("_" "lstatx_np" "$INODE64"); int mkdirx_np(const char *, filesec_t); int mkfifox_np(const char *, filesec_t); int statx_np(const char *, struct stat *, filesec_t) __asm("_" "statx_np" "$INODE64"); int umaskx_np(filesec_t) __attribute__((deprecated)); int fstatx64_np(int, struct stat64 *, filesec_t) __attribute__((deprecated)); int lstatx64_np(const char *, struct stat64 *, filesec_t) __attribute__((deprecated)); int statx64_np(const char *, struct stat64 *, filesec_t) __attribute__((deprecated)); int fstat64(int, struct stat64 *) __attribute__((deprecated)); int lstat64(const char *, struct stat64 *) __attribute__((deprecated)); int stat64(const char *, struct stat64 *) __attribute__((deprecated)); # 6 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 ================================================================================ TEST checkSysWait from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:173) TESTING: checkSysWait from config.headers(config/BuildSystem/config/headers.py:173) Check for POSIX.1 compatible sys/wait.h, and defines HAVE_SYS_WAIT_H if found Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifndef WEXITSTATUS #define WEXITSTATUS(stat_val) ((unsigned)(stat_val) >> 8) #endif #ifndef WIFEXITED #define WIFEXITED(stat_val) (((stat_val) & 255) == 0) #endif int main() { int s; wait (&s); s = WIFEXITED (s) ? WEXITSTATUS (s) : 1; ; return 0; } Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST checkTime from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:195) TESTING: checkTime from config.headers(config/BuildSystem/config/headers.py:195) Checks if you can safely include both and , and if so defines TIME_WITH_SYS_TIME Checking for header: time.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 71 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 72 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" Checking for header: sys/time.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/time.h" 1 3 4 # 67 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 69 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 70 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 76 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 77 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 80 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 81 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 105 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 106 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 107 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 108 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 109 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 110 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 114 "/usr/include/sys/time.h" 2 3 4 # 124 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 167 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 179 "/usr/include/sys/time.h" 2 3 4 int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) ; int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * restrict, void * restrict); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 194 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * restrict, struct itimerval * restrict); int utimes(const char *, const struct timeval *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIME_H" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #include int main() { struct tm *tp = 0; if (tp); ; return 0; } Defined "TIME_WITH_SYS_TIME" to "1" ================================================================================ TEST checkMath from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:203) TESTING: checkMath from config.headers(config/BuildSystem/config/headers.py:203) Checks for the math headers and defines Checking for header: math.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 1 3 4 # 45 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 46 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 47 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 2 3 4 # 59 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 # 59 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 typedef float float_t; typedef double double_t; # 126 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern int __math_errhandling(void); # 159 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern int __fpclassifyf(float); extern int __fpclassifyd(double); extern int __fpclassifyl(long double); # 203 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinitef(float); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinited(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinitel(long double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinff(float); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinfd(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinfl(long double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnanf(float); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnand(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnanl(long double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormalf(float); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormald(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormall(long double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitf(float); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitd(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitl(long double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinitef(float __x) { return __x == __x && __builtin_fabsf(__x) != __builtin_inff(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinited(double __x) { return __x == __x && __builtin_fabs(__x) != __builtin_inf(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isfinitel(long double __x) { return __x == __x && __builtin_fabsl(__x) != __builtin_infl(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinff(float __x) { return __builtin_fabsf(__x) == __builtin_inff(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinfd(double __x) { return __builtin_fabs(__x) == __builtin_inf(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isinfl(long double __x) { return __builtin_fabsl(__x) == __builtin_infl(); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnanf(float __x) { return __x != __x; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnand(double __x) { return __x != __x; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnanl(long double __x) { return __x != __x; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitf(float __x) { union { float __f; unsigned int __u; } __u; __u.__f = __x; return (int)(__u.__u >> 31); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitd(double __x) { union { double __f; unsigned long long __u; } __u; __u.__f = __x; return (int)(__u.__u >> 63); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_signbitl(long double __x) { union { long double __ld; struct{ unsigned long long __m; unsigned short __sexp; } __p; } __u; __u.__ld = __x; return (int)(__u.__p.__sexp >> 15); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormalf(float __x) { return __inline_isfinitef(__x) && __builtin_fabsf(__x) >= 1.17549435082228750797e-38F; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormald(double __x) { return __inline_isfinited(__x) && __builtin_fabs(__x) >= ((double)2.22507385850720138309e-308L); } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __inline_isnormall(long double __x) { return __inline_isfinitel(__x) && __builtin_fabsl(__x) >= 3.36210314311209350626e-4932L; } # 337 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern float acosf(float); extern double acos(double); extern long double acosl(long double); extern float asinf(float); extern double asin(double); extern long double asinl(long double); extern float atanf(float); extern double atan(double); extern long double atanl(long double); extern float atan2f(float, float); extern double atan2(double, double); extern long double atan2l(long double, long double); extern float cosf(float); extern double cos(double); extern long double cosl(long double); extern float sinf(float); extern double sin(double); extern long double sinl(long double); extern float tanf(float); extern double tan(double); extern long double tanl(long double); extern float acoshf(float); extern double acosh(double); extern long double acoshl(long double); extern float asinhf(float); extern double asinh(double); extern long double asinhl(long double); extern float atanhf(float); extern double atanh(double); extern long double atanhl(long double); extern float coshf(float); extern double cosh(double); extern long double coshl(long double); extern float sinhf(float); extern double sinh(double); extern long double sinhl(long double); extern float tanhf(float); extern double tanh(double); extern long double tanhl(long double); extern float expf(float); extern double exp(double); extern long double expl(long double); extern float exp2f(float); extern double exp2(double); extern long double exp2l(long double); extern float expm1f(float); extern double expm1(double); extern long double expm1l(long double); extern float logf(float); extern double log(double); extern long double logl(long double); extern float log10f(float); extern double log10(double); extern long double log10l(long double); extern float log2f(float); extern double log2(double); extern long double log2l(long double); extern float log1pf(float); extern double log1p(double); extern long double log1pl(long double); extern float logbf(float); extern double logb(double); extern long double logbl(long double); extern float modff(float, float *); extern double modf(double, double *); extern long double modfl(long double, long double *); extern float ldexpf(float, int); extern double ldexp(double, int); extern long double ldexpl(long double, int); extern float frexpf(float, int *); extern double frexp(double, int *); extern long double frexpl(long double, int *); extern int ilogbf(float); extern int ilogb(double); extern int ilogbl(long double); extern float scalbnf(float, int); extern double scalbn(double, int); extern long double scalbnl(long double, int); extern float scalblnf(float, long int); extern double scalbln(double, long int); extern long double scalblnl(long double, long int); extern float fabsf(float); extern double fabs(double); extern long double fabsl(long double); extern float cbrtf(float); extern double cbrt(double); extern long double cbrtl(long double); extern float hypotf(float, float); extern double hypot(double, double); extern long double hypotl(long double, long double); extern float powf(float, float); extern double pow(double, double); extern long double powl(long double, long double); extern float sqrtf(float); extern double sqrt(double); extern long double sqrtl(long double); extern float erff(float); extern double erf(double); extern long double erfl(long double); extern float erfcf(float); extern double erfc(double); extern long double erfcl(long double); extern float lgammaf(float); extern double lgamma(double); extern long double lgammal(long double); extern float tgammaf(float); extern double tgamma(double); extern long double tgammal(long double); extern float ceilf(float); extern double ceil(double); extern long double ceill(long double); extern float floorf(float); extern double floor(double); extern long double floorl(long double); extern float nearbyintf(float); extern double nearbyint(double); extern long double nearbyintl(long double); extern float rintf(float); extern double rint(double); extern long double rintl(long double); extern long int lrintf(float); extern long int lrint(double); extern long int lrintl(long double); extern float roundf(float); extern double round(double); extern long double roundl(long double); extern long int lroundf(float); extern long int lround(double); extern long int lroundl(long double); extern long long int llrintf(float); extern long long int llrint(double); extern long long int llrintl(long double); extern long long int llroundf(float); extern long long int llround(double); extern long long int llroundl(long double); extern float truncf(float); extern double trunc(double); extern long double truncl(long double); extern float fmodf(float, float); extern double fmod(double, double); extern long double fmodl(long double, long double); extern float remainderf(float, float); extern double remainder(double, double); extern long double remainderl(long double, long double); extern float remquof(float, float, int *); extern double remquo(double, double, int *); extern long double remquol(long double, long double, int *); extern float copysignf(float, float); extern double copysign(double, double); extern long double copysignl(long double, long double); extern float nanf(const char *); extern double nan(const char *); extern long double nanl(const char *); extern float nextafterf(float, float); extern double nextafter(double, double); extern long double nextafterl(long double, long double); extern double nexttoward(double, long double); extern float nexttowardf(float, long double); extern long double nexttowardl(long double, long double); extern float fdimf(float, float); extern double fdim(double, double); extern long double fdiml(long double, long double); extern float fmaxf(float, float); extern double fmax(double, double); extern long double fmaxl(long double, long double); extern float fminf(float, float); extern double fmin(double, double); extern long double fminl(long double, long double); extern float fmaf(float, float, float); extern double fma(double, double, double); extern long double fmal(long double, long double, long double); # 580 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern float __inff(void) __attribute__((deprecated)); extern double __inf(void) __attribute__((deprecated)); extern long double __infl(void) __attribute__((deprecated)); extern float __nan(void) ; # 612 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern float __exp10f(float) ; extern double __exp10(double) ; extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincosf(float __x, float *__sinp, float *__cosp) ; extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincos(double __x, double *__sinp, double *__cosp) ; # 629 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern float __cospif(float) ; extern double __cospi(double) ; extern float __sinpif(float) ; extern double __sinpi(double) ; extern float __tanpif(float) ; extern double __tanpi(double) ; extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincospif(float __x, float *__sinp, float *__cosp) ; extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincospi(double __x, double *__sinp, double *__cosp) ; struct __float2 { float __sinval; float __cosval; }; struct __double2 { double __sinval; double __cosval; }; extern struct __float2 __sincosf_stret(float); extern struct __double2 __sincos_stret(double); extern struct __float2 __sincospif_stret(float); extern struct __double2 __sincospi_stret(double); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincosf(float __x, float *__sinp, float *__cosp) { const struct __float2 __stret = __sincosf_stret(__x); *__sinp = __stret.__sinval; *__cosp = __stret.__cosval; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincos(double __x, double *__sinp, double *__cosp) { const struct __double2 __stret = __sincos_stret(__x); *__sinp = __stret.__sinval; *__cosp = __stret.__cosval; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincospif(float __x, float *__sinp, float *__cosp) { const struct __float2 __stret = __sincospif_stret(__x); *__sinp = __stret.__sinval; *__cosp = __stret.__cosval; } extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) void __sincospi(double __x, double *__sinp, double *__cosp) { const struct __double2 __stret = __sincospi_stret(__x); *__sinp = __stret.__sinval; *__cosp = __stret.__cosval; } extern double j0(double) ; extern double j1(double) ; extern double jn(int, double) ; extern double y0(double) ; extern double y1(double) ; extern double yn(int, double) ; extern double scalb(double, double); extern int signgam; # 727 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/math.h" 3 4 extern long int rinttol(double) __attribute__((deprecated)); extern long int roundtol(double) __attribute__((deprecated)); extern double drem(double, double) __attribute__((deprecated)); extern int finite(double) __attribute__((deprecated)); extern double gamma(double) __attribute__((deprecated)); extern double significand(double) __attribute__((deprecated)); struct exception { int type; char *name; double arg1; double arg2; double retval; }; extern int matherr(struct exception *) __attribute__((deprecated)); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MATH_H" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { double pi = M_PI; if (pi); ; return 0; } Found math #defines, like M_PI ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/socket.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/socket.h" 2 3 4 # 93 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_sa_family_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sa_family_t.h" 3 4 typedef __uint8_t sa_family_t; # 94 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/_types/_socklen_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_socklen_t.h" 3 4 typedef __darwin_socklen_t socklen_t; # 95 "/usr/include/sys/socket.h" 2 3 4 # 105 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_iovec_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_iovec_t.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 106 "/usr/include/sys/socket.h" 2 3 4 # 190 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 208 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 283 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 296 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 316 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 416 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 457 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 548 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) ; int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SOCKET_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/types.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TYPES_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: malloc.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: malloc.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: malloc.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: malloc.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: time.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 71 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 72 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_TIME_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Direct.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: Direct.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: Ws2tcpip.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: Ws2tcpip.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: endian.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: endian.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: endian.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: endian.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: ieeefp.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: ieeefp.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: strings.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/strings.h" 1 3 4 # 61 "/usr/include/strings.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 65 "/usr/include/strings.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 66 "/usr/include/strings.h" 2 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) ; int ffsll(long long) ; int fls(int) ; int flsl(long) ; int flsll(long long) ; # 1 "/usr/include/string.h" 1 3 4 # 65 "/usr/include/string.h" 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 66 "/usr/include/string.h" 2 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 103 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 115 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 129 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) ; char *strndup(const char *, size_t) ; size_t strnlen(const char *, size_t) ; char *strsignal(int sig); # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 142 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 143 "/usr/include/string.h" 2 3 4 errno_t memset_s(void *, rsize_t, int, rsize_t) ; # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 153 "/usr/include/string.h" 2 3 4 void *memmem(const void *, size_t, const void *, size_t) ; void memset_pattern4(void *, const void *, size_t) ; void memset_pattern8(void *, const void *, size_t) ; void memset_pattern16(void *, const void *, size_t) ; char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 177 "/usr/include/string.h" 2 3 4 # 186 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 34 "/usr/include/secure/_string.h" 2 3 4 # 187 "/usr/include/string.h" 2 3 4 # 93 "/usr/include/strings.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRINGS_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sched.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sched.h" 1 3 4 # 27 "/usr/include/sched.h" 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 28 "/usr/include/sched.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 29 "/usr/include/sched.h" 2 3 4 # 35 "/usr/include/sched.h" 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SCHED_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: cxxabi.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/cxxabi.h" 1 3 4 # 18 "/usr/include/cxxabi.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 1 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 216 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef int wchar_t; # 426 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef struct { long long __max_align_ll __attribute__((__aligned__(__alignof__(long long)))); long double __max_align_ld __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 19 "/usr/include/cxxabi.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef __signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 62 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 20 "/usr/include/cxxabi.h" 2 3 4 # 173 "/usr/include/cxxabi.h" 3 4 namespace abi = __cxxabiv1; # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_CXXABI_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/systeminfo.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:28: fatal error: sys/systeminfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: dos.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:17: fatal error: dos.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: WindowsX.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:22: fatal error: WindowsX.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/sysinfo.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:25: fatal error: sys/sysinfo.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:25: fatal error: sys/sysinfo.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:25: fatal error: sys/sysinfo.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/wait.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/wait.h" 1 3 4 # 67 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 68 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 69 "/usr/include/sys/wait.h" 2 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 76 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_WAIT_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdlib.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 31 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 76 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/_types/_ct_rune_t.h" 1 3 4 # 31 "/usr/include/sys/_types/_ct_rune_t.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; # 77 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_rune_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rune_t.h" 3 4 typedef __darwin_rune_t rune_t; # 78 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_wchar_t.h" 1 3 4 # 33 "/usr/include/sys/_types/_wchar_t.h" 3 4 typedef __darwin_wchar_t wchar_t; # 81 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 100 "/usr/include/stdlib.h" 2 3 4 # 117 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 127 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) ; void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ) ; size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 239 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 241 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 242 "/usr/include/stdlib.h" 2 3 4 u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) ; void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) ; char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated)); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) ; void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) ; void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDLIB_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pthread.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 55 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 56 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/pthread_impl.h" 1 3 4 # 58 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/sched.h" 1 3 4 # 27 "/usr/include/pthread/sched.h" 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 28 "/usr/include/pthread/sched.h" 2 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 60 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 71 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 72 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 61 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 63 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 64 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 65 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 66 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 67 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 68 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 69 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 70 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 71 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 72 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/qos.h" 1 3 4 # 28 "/usr/include/pthread/qos.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 29 "/usr/include/pthread/qos.h" 2 3 4 # 1 "/usr/include/sys/qos.h" 1 3 4 # 124 "/usr/include/sys/qos.h" 3 4 enum { QOS_CLASS_USER_INTERACTIVE = 0x21, QOS_CLASS_USER_INITIATED = 0x19, QOS_CLASS_DEFAULT = 0x15, QOS_CLASS_UTILITY = 0x11, QOS_CLASS_BACKGROUND = 0x09, QOS_CLASS_UNSPECIFIED = 0x00, }; typedef unsigned int qos_class_t # 137 "/usr/include/sys/qos.h" 3 4 ; # 153 "/usr/include/sys/qos.h" 3 4 # 164 "/usr/include/sys/qos.h" 3 4 qos_class_t qos_class_self(void); # 186 "/usr/include/sys/qos.h" 3 4 qos_class_t qos_class_main(void); # 33 "/usr/include/pthread/qos.h" 2 3 4 # 76 "/usr/include/pthread/qos.h" 3 4 int pthread_attr_set_qos_class_np(pthread_attr_t *__attr, qos_class_t __qos_class, int __relative_priority); # 107 "/usr/include/pthread/qos.h" 3 4 int pthread_attr_get_qos_class_np(pthread_attr_t * restrict __attr, qos_class_t * restrict __qos_class, int * restrict __relative_priority); # 148 "/usr/include/pthread/qos.h" 3 4 int pthread_set_qos_class_self_np(qos_class_t __qos_class, int __relative_priority); # 179 "/usr/include/pthread/qos.h" 3 4 int pthread_get_qos_class_np(pthread_t __pthread, qos_class_t * restrict __qos_class, int * restrict __relative_priority); # 206 "/usr/include/pthread/qos.h" 3 4 typedef struct pthread_override_s* pthread_override_t; # 258 "/usr/include/pthread/qos.h" 3 4 pthread_override_t pthread_override_qos_class_start_np(pthread_t __pthread, qos_class_t __qos_class, int __relative_priority); # 286 "/usr/include/pthread/qos.h" 3 4 int pthread_override_qos_class_end_np(pthread_override_t __override); # 74 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_types/_mach_port_t.h" 1 3 4 # 49 "/usr/include/sys/_types/_mach_port_t.h" 3 4 typedef __darwin_mach_port_t mach_port_t; # 78 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 79 "/usr/include/pthread.h" 2 3 4 # 105 "/usr/include/pthread.h" 3 4 # 209 "/usr/include/pthread.h" 3 4 int pthread_atfork(void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy(pthread_attr_t *); int pthread_attr_getdetachstate(const pthread_attr_t *, int *); int pthread_attr_getguardsize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_getinheritsched(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getschedparam(const pthread_attr_t * restrict, struct sched_param * restrict); int pthread_attr_getschedpolicy(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getscope(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getstack(const pthread_attr_t * restrict, void ** restrict, size_t * restrict); int pthread_attr_getstackaddr(const pthread_attr_t * restrict, void ** restrict); int pthread_attr_getstacksize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_init(pthread_attr_t *); int pthread_attr_setdetachstate(pthread_attr_t *, int); int pthread_attr_setguardsize(pthread_attr_t *, size_t); int pthread_attr_setinheritsched(pthread_attr_t *, int); int pthread_attr_setschedparam(pthread_attr_t * restrict, const struct sched_param * restrict); int pthread_attr_setschedpolicy(pthread_attr_t *, int); int pthread_attr_setscope(pthread_attr_t *, int); int pthread_attr_setstack(pthread_attr_t *, void *, size_t); int pthread_attr_setstackaddr(pthread_attr_t *, void *); int pthread_attr_setstacksize(pthread_attr_t *, size_t); int pthread_cancel(pthread_t) __asm("_" "pthread_cancel" ); int pthread_cond_broadcast(pthread_cond_t *); int pthread_cond_destroy(pthread_cond_t *); int pthread_cond_init(pthread_cond_t * restrict, const pthread_condattr_t * restrict) __asm("_" "pthread_cond_init" ); int pthread_cond_signal(pthread_cond_t *); int pthread_cond_timedwait(pthread_cond_t * restrict, pthread_mutex_t * restrict, const struct timespec * restrict) __asm("_" "pthread_cond_timedwait" ); int pthread_cond_wait(pthread_cond_t * restrict, pthread_mutex_t * restrict) __asm("_" "pthread_cond_wait" ); int pthread_condattr_destroy(pthread_condattr_t *); int pthread_condattr_init(pthread_condattr_t *); int pthread_condattr_getpshared(const pthread_condattr_t * restrict, int * restrict); int pthread_condattr_setpshared(pthread_condattr_t *, int); int pthread_create(pthread_t * restrict, const pthread_attr_t * restrict, void *(*)(void *), void * restrict); int pthread_detach(pthread_t); int pthread_equal(pthread_t, pthread_t); void pthread_exit(void *) __attribute__((noreturn)); int pthread_getconcurrency(void); int pthread_getschedparam(pthread_t , int * restrict, struct sched_param * restrict); void* pthread_getspecific(pthread_key_t); int pthread_join(pthread_t , void **) __asm("_" "pthread_join" ); int pthread_key_create(pthread_key_t *, void (*)(void *)); int pthread_key_delete(pthread_key_t); int pthread_mutex_destroy(pthread_mutex_t *); int pthread_mutex_getprioceiling(const pthread_mutex_t * restrict, int * restrict); int pthread_mutex_init(pthread_mutex_t * restrict, const pthread_mutexattr_t * restrict); int pthread_mutex_lock(pthread_mutex_t *); int pthread_mutex_setprioceiling(pthread_mutex_t * restrict, int, int * restrict); int pthread_mutex_trylock(pthread_mutex_t *); int pthread_mutex_unlock(pthread_mutex_t *); int pthread_mutexattr_destroy(pthread_mutexattr_t *) __asm("_" "pthread_mutexattr_destroy" ); int pthread_mutexattr_getprioceiling(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getprotocol(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getpshared(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_gettype(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_init(pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling(pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol(pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared(pthread_mutexattr_t *, int); int pthread_mutexattr_settype(pthread_mutexattr_t *, int); int pthread_once(pthread_once_t *, void (*)(void)); int pthread_rwlock_destroy(pthread_rwlock_t * ) __asm("_" "pthread_rwlock_destroy" ); int pthread_rwlock_init(pthread_rwlock_t * restrict, const pthread_rwlockattr_t * restrict) __asm("_" "pthread_rwlock_init" ); int pthread_rwlock_rdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_rdlock" ); int pthread_rwlock_tryrdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_tryrdlock" ); int pthread_rwlock_trywrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_trywrlock" ); int pthread_rwlock_wrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_wrlock" ); int pthread_rwlock_unlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_unlock" ); int pthread_rwlockattr_destroy(pthread_rwlockattr_t *); int pthread_rwlockattr_getpshared(const pthread_rwlockattr_t * restrict, int * restrict); int pthread_rwlockattr_init(pthread_rwlockattr_t *); int pthread_rwlockattr_setpshared(pthread_rwlockattr_t *, int); pthread_t pthread_self(void); int pthread_setcancelstate(int , int *) __asm("_" "pthread_setcancelstate" ); int pthread_setcanceltype(int , int *) __asm("_" "pthread_setcanceltype" ); int pthread_setconcurrency(int); int pthread_setschedparam(pthread_t, int, const struct sched_param *); int pthread_setspecific(pthread_key_t , const void *); void pthread_testcancel(void) __asm("_" "pthread_testcancel" ); int pthread_is_threaded_np(void); int pthread_threadid_np(pthread_t,__uint64_t*); int pthread_getname_np(pthread_t,char*,size_t); int pthread_setname_np(const char*); int pthread_main_np(void); mach_port_t pthread_mach_thread_np(pthread_t); size_t pthread_get_stacksize_np(pthread_t); void* pthread_get_stackaddr_np(pthread_t); int pthread_cond_signal_thread_np(pthread_cond_t *, pthread_t); int pthread_cond_timedwait_relative_np(pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_create_suspended_np(pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_kill(pthread_t, int); pthread_t pthread_from_mach_thread_np(mach_port_t); int pthread_sigmask(int, const sigset_t *, sigset_t *) __asm("_" "pthread_sigmask" ); void pthread_yield_np(void); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PTHREAD_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: setjmp.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/setjmp.h" 1 3 4 # 26 "/usr/include/setjmp.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 27 "/usr/include/setjmp.h" 2 3 4 # 36 "/usr/include/setjmp.h" 3 4 # 36 "/usr/include/setjmp.h" 3 4 typedef int jmp_buf[((9 * 2) + 3 + 16)]; typedef int sigjmp_buf[((9 * 2) + 3 + 16) + 1]; # 72 "/usr/include/setjmp.h" 3 4 extern int setjmp(jmp_buf); extern void longjmp(jmp_buf, int) __attribute__((noreturn)); int _setjmp(jmp_buf); void _longjmp(jmp_buf, int) __attribute__((noreturn)); int sigsetjmp(sigjmp_buf, int); void siglongjmp(sigjmp_buf, int) __attribute__((noreturn)); void longjmperror(void); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SETJMP_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/utsname.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/utsname.h" 1 3 4 # 70 "/usr/include/sys/utsname.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 71 "/usr/include/sys/utsname.h" 2 3 4 # 74 "/usr/include/sys/utsname.h" 3 4 struct utsname { char sysname[256]; char nodename[256]; char release[256]; char version[256]; char machine[256]; }; int uname(struct utsname *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_UTSNAME_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: machine/endian.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 69 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 70 "/usr/include/i386/endian.h" 2 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 40 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 41 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_MACHINE_ENDIAN_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: limits.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 168 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 63 "/usr/include/limits.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 64 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 66 "/usr/include/limits.h" 2 3 4 # 169 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 8 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_LIMITS_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: fcntl.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/fcntl.h" 1 3 4 # 23 "/usr/include/fcntl.h" 3 4 # 1 "/usr/include/sys/fcntl.h" 1 3 4 # 78 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 79 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 81 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 84 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 85 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 86 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 87 "/usr/include/sys/fcntl.h" 2 3 4 # 116 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types/_o_sync.h" 1 3 4 # 117 "/usr/include/sys/fcntl.h" 2 3 4 # 157 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types/_o_dsync.h" 1 3 4 # 158 "/usr/include/sys/fcntl.h" 2 3 4 # 296 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types/_seek_set.h" 1 3 4 # 297 "/usr/include/sys/fcntl.h" 2 3 4 # 1 "/usr/include/sys/_types/_s_ifmt.h" 1 3 4 # 303 "/usr/include/sys/fcntl.h" 2 3 4 # 321 "/usr/include/sys/fcntl.h" 3 4 struct flock { off_t l_start; off_t l_len; pid_t l_pid; short l_type; short l_whence; }; # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 330 "/usr/include/sys/fcntl.h" 2 3 4 struct flocktimeout { struct flock fl; struct timespec timeout; }; # 349 "/usr/include/sys/fcntl.h" 3 4 struct radvisory { off_t ra_offset; int ra_count; }; typedef struct fcodeblobs { void *f_cd_hash; size_t f_hash_size; void *f_cd_buffer; size_t f_cd_size; unsigned int *f_out_size; int f_arch; int __padding; } fcodeblobs_t; # 373 "/usr/include/sys/fcntl.h" 3 4 typedef struct fsignatures { off_t fs_file_start; void *fs_blob_start; size_t fs_blob_size; } fsignatures_t; # 387 "/usr/include/sys/fcntl.h" 3 4 typedef struct fstore { unsigned int fst_flags; int fst_posmode; off_t fst_offset; off_t fst_length; off_t fst_bytesalloc; } fstore_t; typedef struct fbootstraptransfer { off_t fbt_offset; size_t fbt_length; void *fbt_buffer; } fbootstraptransfer_t; # 425 "/usr/include/sys/fcntl.h" 3 4 #pragma pack(4) struct log2phys { unsigned int l2p_flags; off_t l2p_contigbytes; off_t l2p_devoffset; }; #pragma pack() # 448 "/usr/include/sys/fcntl.h" 3 4 # 1 "/usr/include/sys/_types/_filesec_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_filesec_t.h" 3 4 struct _filesec; typedef struct _filesec *filesec_t; # 449 "/usr/include/sys/fcntl.h" 2 3 4 typedef enum { FILESEC_OWNER = 1, FILESEC_GROUP = 2, FILESEC_UUID = 3, FILESEC_MODE = 4, FILESEC_ACL = 5, FILESEC_GRPUUID = 6, FILESEC_ACL_RAW = 100, FILESEC_ACL_ALLOCSIZE = 101 } filesec_property_t; int open(const char *, int, ...) __asm("_" "open" ); int openat(int, const char *, int, ...) __asm("_" "openat" ) ; int creat(const char *, mode_t) __asm("_" "creat" ); int fcntl(int, int, ...) __asm("_" "fcntl" ); int openx_np(const char *, int, filesec_t); int open_dprotected_np ( const char *, int, int, int, ...); int flock(int, int); filesec_t filesec_init(void); filesec_t filesec_dup(filesec_t); void filesec_free(filesec_t); int filesec_get_property(filesec_t, filesec_property_t, void *); int filesec_query_property(filesec_t, filesec_property_t, int *); int filesec_set_property(filesec_t, filesec_property_t, const void *); int filesec_unset_property(filesec_t, filesec_property_t) ; # 23 "/usr/include/fcntl.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FCNTL_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: string.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/string.h" 1 3 4 # 61 "/usr/include/string.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 62 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 64 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 65 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 66 "/usr/include/string.h" 2 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 103 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 115 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 129 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) ; char *strndup(const char *, size_t) ; size_t strnlen(const char *, size_t) ; char *strsignal(int sig); # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 142 "/usr/include/string.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 143 "/usr/include/string.h" 2 3 4 errno_t memset_s(void *, rsize_t, int, rsize_t) ; # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 153 "/usr/include/string.h" 2 3 4 void *memmem(const void *, size_t, const void *, size_t) ; void memset_pattern4(void *, const void *, size_t) ; void memset_pattern8(void *, const void *, size_t) ; void memset_pattern16(void *, const void *, size_t) ; char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 67 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) ; int ffsll(long long) ; int fls(int) ; int flsl(long) ; int flsll(long long) ; # 1 "/usr/include/string.h" 1 3 4 # 93 "/usr/include/strings.h" 2 3 4 # 177 "/usr/include/string.h" 2 3 4 # 186 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 33 "/usr/include/secure/_string.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 34 "/usr/include/secure/_string.h" 2 3 4 # 187 "/usr/include/string.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STRING_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/times.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/times.h" 1 3 4 # 72 "/usr/include/sys/times.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 74 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 75 "/usr/include/sys/times.h" 2 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 78 "/usr/include/sys/times.h" 2 3 4 struct tms { clock_t tms_utime; clock_t tms_stime; clock_t tms_cutime; clock_t tms_cstime; }; clock_t times(struct tms *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_TIMES_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: io.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:16: fatal error: io.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: stdint.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef __signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 62 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_STDINT_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: pwd.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/pwd.h" 1 3 4 # 46 "/usr/include/pwd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 47 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 48 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 49 "/usr/include/pwd.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 50 "/usr/include/pwd.h" 2 3 4 # 84 "/usr/include/pwd.h" 3 4 struct passwd { char *pw_name; char *pw_passwd; uid_t pw_uid; gid_t pw_gid; __darwin_time_t pw_change; char *pw_class; char *pw_gecos; char *pw_dir; char *pw_shell; __darwin_time_t pw_expire; }; struct passwd *getpwuid(uid_t); struct passwd *getpwnam(const char *); int getpwuid_r(uid_t, struct passwd *, char *, size_t, struct passwd **); int getpwnam_r(const char *, struct passwd *, char *, size_t, struct passwd **); struct passwd *getpwent(void); void setpwent(void); void endpwent(void); # 1 "/usr/include/uuid/uuid.h" 1 3 4 # 39 "/usr/include/uuid/uuid.h" 3 4 # 1 "/usr/include/sys/_types/_uuid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uuid_t.h" 3 4 typedef __darwin_uuid_t uuid_t; # 40 "/usr/include/uuid/uuid.h" 2 3 4 typedef __darwin_uuid_string_t uuid_string_t; # 53 "/usr/include/uuid/uuid.h" 3 4 void uuid_clear(uuid_t uu); int uuid_compare(const uuid_t uu1, const uuid_t uu2); void uuid_copy(uuid_t dst, const uuid_t src); void uuid_generate(uuid_t out); void uuid_generate_random(uuid_t out); void uuid_generate_time(uuid_t out); int uuid_is_null(const uuid_t uu); int uuid_parse(const uuid_string_t in, uuid_t uu); void uuid_unparse(const uuid_t uu, uuid_string_t out); void uuid_unparse_lower(const uuid_t uu, uuid_string_t out); void uuid_unparse_upper(const uuid_t uu, uuid_string_t out); # 111 "/usr/include/pwd.h" 2 3 4 int setpassent(int); char *user_from_uid(uid_t, int); struct passwd *getpwuuid(uuid_t); int getpwuuid_r(uuid_t, struct passwd *, char *, size_t, struct passwd **); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_PWD_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: float.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/float.h" 1 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_FLOAT_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/param.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/param.h" 1 3 4 # 79 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 80 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 81 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 76 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 84 "/usr/include/sys/param.h" 2 3 4 # 93 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 94 "/usr/include/sys/param.h" 2 3 4 # 107 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/machine/param.h" 1 3 4 # 35 "/usr/include/machine/param.h" 3 4 # 1 "/usr/include/i386/param.h" 1 3 4 # 75 "/usr/include/i386/param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 76 "/usr/include/i386/param.h" 2 3 4 # 36 "/usr/include/machine/param.h" 2 3 4 # 108 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 168 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 64 "/usr/include/limits.h" 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 169 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 8 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 111 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 114 "/usr/include/sys/param.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_PARAM_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netdb.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/netdb.h" 1 3 4 # 86 "/usr/include/netdb.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 87 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 88 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/sys/_types/_socklen_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_socklen_t.h" 3 4 typedef __darwin_socklen_t socklen_t; # 89 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 91 "/usr/include/netdb.h" 2 3 4 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 73 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 75 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 93 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_sa_family_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sa_family_t.h" 3 4 typedef __uint8_t sa_family_t; # 94 "/usr/include/sys/socket.h" 2 3 4 # 105 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_iovec_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_iovec_t.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 106 "/usr/include/sys/socket.h" 2 3 4 # 190 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 208 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 283 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 296 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 316 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 416 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 457 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 548 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) ; int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 82 "/usr/include/netinet/in.h" 2 3 4 # 301 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 374 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 393 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 501 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 549 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) ; int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) ; int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) ; int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) ; # 612 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 654 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 152 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 170 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 212 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 528 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 624 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 655 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 92 "/usr/include/netdb.h" 2 3 4 # 101 "/usr/include/netdb.h" 3 4 extern int h_errno; # 112 "/usr/include/netdb.h" 3 4 struct hostent { char *h_name; char **h_aliases; int h_addrtype; int h_length; char **h_addr_list; }; struct netent { char *n_name; char **n_aliases; int n_addrtype; uint32_t n_net; }; struct servent { char *s_name; char **s_aliases; int s_port; char *s_proto; }; struct protoent { char *p_name; char **p_aliases; int p_proto; }; struct addrinfo { int ai_flags; int ai_family; int ai_socktype; int ai_protocol; socklen_t ai_addrlen; char *ai_canonname; struct sockaddr *ai_addr; struct addrinfo *ai_next; }; struct rpcent { char *r_name; char **r_aliases; int r_number; }; # 257 "/usr/include/netdb.h" 3 4 void endhostent(void); void endnetent(void); void endprotoent(void); void endservent(void); void freeaddrinfo(struct addrinfo *); const char *gai_strerror(int); int getaddrinfo(const char * restrict, const char * restrict, const struct addrinfo * restrict, struct addrinfo ** restrict); struct hostent *gethostbyaddr(const void *, socklen_t, int); struct hostent *gethostbyname(const char *); struct hostent *gethostent(void); int getnameinfo(const struct sockaddr * restrict, socklen_t, char * restrict, socklen_t, char * restrict, socklen_t, int); struct netent *getnetbyaddr(uint32_t, int); struct netent *getnetbyname(const char *); struct netent *getnetent(void); struct protoent *getprotobyname(const char *); struct protoent *getprotobynumber(int); struct protoent *getprotoent(void); struct servent *getservbyname(const char *, const char *); struct servent *getservbyport(int, const char *); struct servent *getservent(void); void sethostent(int); void setnetent(int); void setprotoent(int); void setservent(int); void freehostent(struct hostent *); struct hostent *gethostbyname2(const char *, int); struct hostent *getipnodebyaddr(const void *, size_t, int, int *); struct hostent *getipnodebyname(const char *, int, int, int *); struct rpcent *getrpcbyname(const char *name); struct rpcent *getrpcbynumber(int number); struct rpcent *getrpcent(void); void setrpcent(int stayopen); void endrpcent(void); void herror(const char *); const char *hstrerror(int); int innetgr(const char *, const char *, const char *, const char *); int getnetgrent(char **, char **, char **); void endnetgrent(void); void setnetgrent(const char *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETDB_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: search.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/search.h" 1 3 4 # 12 "/usr/include/search.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 13 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 14 "/usr/include/search.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 15 "/usr/include/search.h" 2 3 4 typedef struct entry { char *key; void *data; } ENTRY; typedef enum { FIND, ENTER } ACTION; typedef enum { preorder, postorder, endorder, leaf } VISIT; # 44 "/usr/include/search.h" 3 4 int hcreate(size_t); void hdestroy(void); ENTRY *hsearch(ENTRY, ACTION); void insque(void *, void *); void *lfind(const void *, const void *, size_t *, size_t, int (*)(const void *, const void *)); void *lsearch(const void *, void *, size_t *, size_t, int (*)(const void *, const void *)); void remque(void *); void *tdelete(const void * restrict, void ** restrict, int (*)(const void *, const void *)); void *tfind(const void *, void * const *, int (*)(const void *, const void *)); void *tsearch(const void *, void **, int (*)(const void *, const void *)); void twalk(const void *, void (*)(const void *, VISIT, int)); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SEARCH_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: mathimf.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:21: fatal error: mathimf.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/procfs.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:24: fatal error: sys/procfs.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:24: fatal error: sys/procfs.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:24: fatal error: sys/procfs.h: No such file or directorycompilation terminated.: ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: sys/resource.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/sys/resource.h" 1 3 4 # 67 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 68 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 69 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 70 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 76 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 84 "/usr/include/sys/resource.h" 2 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_RESOURCE_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: unistd.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/unistd.h" 1 3 4 # 71 "/usr/include/unistd.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 72 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/unistd.h" 1 3 4 # 84 "/usr/include/sys/unistd.h" 3 4 # 1 "/usr/include/sys/_types/_posix_vdisable.h" 1 3 4 # 85 "/usr/include/sys/unistd.h" 2 3 4 # 122 "/usr/include/sys/unistd.h" 3 4 # 1 "/usr/include/sys/_types/_seek_set.h" 1 3 4 # 123 "/usr/include/sys/unistd.h" 2 3 4 # 132 "/usr/include/sys/unistd.h" 3 4 struct accessx_descriptor { unsigned int ad_name_offset; int ad_flags; int ad_pad[2]; }; # 179 "/usr/include/sys/unistd.h" 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 180 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 181 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 182 "/usr/include/sys/unistd.h" 2 3 4 int getattrlistbulk(int, void *, void *, size_t, uint64_t) ; # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 196 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 198 "/usr/include/sys/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 199 "/usr/include/sys/unistd.h" 2 3 4 int faccessat(int, const char *, int, int) ; int fchownat(int, const char *, uid_t, gid_t, int) ; int linkat(int, const char *, int, const char *, int) ; ssize_t readlinkat(int, const char *, char *, size_t) ; int symlinkat(const char *, int, const char *) ; int unlinkat(int, const char *, int) ; int getattrlistat(int, const char *, void *, void *, size_t, unsigned long) ; # 73 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 76 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 77 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 78 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 84 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 85 "/usr/include/unistd.h" 2 3 4 # 423 "/usr/include/unistd.h" 3 4 void _exit(int) __attribute__((noreturn)); int access(const char *, int); unsigned int alarm(unsigned int); int chdir(const char *); int chown(const char *, uid_t, gid_t); int close(int) __asm("_" "close" ); int dup(int); int dup2(int, int); int execl(const char *, const char *, ...); int execle(const char *, const char *, ...); int execlp(const char *, const char *, ...); int execv(const char *, char * const *); int execve(const char *, char * const *, char * const *); int execvp(const char *, char * const *); pid_t fork(void); long fpathconf(int, int); char *getcwd(char *, size_t); gid_t getegid(void); uid_t geteuid(void); gid_t getgid(void); int getgroups(int, gid_t []); char *getlogin(void); pid_t getpgrp(void); pid_t getpid(void); pid_t getppid(void); uid_t getuid(void); int isatty(int); int link(const char *, const char *); off_t lseek(int, off_t, int); long pathconf(const char *, int); int pause(void) __asm("_" "pause" ); int pipe(int [2]); ssize_t read(int, void *, size_t) __asm("_" "read" ); int rmdir(const char *); int setgid(gid_t); int setpgid(pid_t, pid_t); pid_t setsid(void); int setuid(uid_t); unsigned int sleep(unsigned int) __asm("_" "sleep" ); long sysconf(int); pid_t tcgetpgrp(int); int tcsetpgrp(int, pid_t); char *ttyname(int); int ttyname_r(int, char *, size_t) __asm("_" "ttyname_r" ); int unlink(const char *); ssize_t write(int, const void *, size_t) __asm("_" "write" ); # 500 "/usr/include/unistd.h" 3 4 size_t confstr(int, char *, size_t) __asm("_" "confstr" ); int getopt(int, char * const [], const char *) __asm("_" "getopt" ); extern char *optarg; extern int optind, opterr, optopt; # 525 "/usr/include/unistd.h" 3 4 __attribute__((deprecated)) void *brk(const void *); int chroot(const char *) ; char *crypt(const char *, const char *); char *ctermid(char *); void encrypt(char *, int) __asm("_" "encrypt" ); int fchdir(int); long gethostid(void); pid_t getpgid(pid_t); pid_t getsid(pid_t); int getdtablesize(void) ; int getpagesize(void) __attribute__((const)) ; char *getpass(const char *) ; char *getwd(char *) ; int lchown(const char *, uid_t, gid_t) __asm("_" "lchown" ); int lockf(int, int, off_t) __asm("_" "lockf" ); int nice(int) __asm("_" "nice" ); ssize_t pread(int, void *, size_t, off_t) __asm("_" "pread" ); ssize_t pwrite(int, const void *, size_t, off_t) __asm("_" "pwrite" ); __attribute__((deprecated)) void *sbrk(int); pid_t setpgrp(void) __asm("_" "setpgrp" ); int setregid(gid_t, gid_t) __asm("_" "setregid" ); int setreuid(uid_t, uid_t) __asm("_" "setreuid" ); void swab(const void * restrict, void * restrict, ssize_t); void sync(void); int truncate(const char *, off_t); useconds_t ualarm(useconds_t, useconds_t); int usleep(useconds_t) __asm("_" "usleep" ); pid_t vfork(void); int fsync(int) __asm("_" "fsync" ); int ftruncate(int, off_t); int getlogin_r(char *, size_t); # 618 "/usr/include/unistd.h" 3 4 int fchown(int, uid_t, gid_t); int gethostname(char *, size_t); ssize_t readlink(const char * restrict, char * restrict, size_t); int setegid(gid_t); int seteuid(uid_t); int symlink(const char *, const char *); # 1 "/usr/include/sys/select.h" 1 3 4 # 66 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/sys/select.h" 2 3 4 # 75 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 76 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 77 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 85 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 86 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 87 "/usr/include/sys/select.h" 2 3 4 # 100 "/usr/include/sys/select.h" 3 4 # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 101 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 102 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 103 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 104 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 105 "/usr/include/sys/select.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 108 "/usr/include/sys/select.h" 2 3 4 int pselect(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, const struct timespec * restrict, const sigset_t * restrict) __asm("_" "pselect" "$1050") ; # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 130 "/usr/include/sys/select.h" 2 3 4 # 634 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 636 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 637 "/usr/include/unistd.h" 2 3 4 # 1 "/usr/include/sys/_types/_uuid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uuid_t.h" 3 4 typedef __darwin_uuid_t uuid_t; # 638 "/usr/include/unistd.h" 2 3 4 void _Exit(int) __attribute__((noreturn)); int accessx_np(const struct accessx_descriptor *, size_t, int *, uid_t); int acct(const char *); int add_profil(char *, size_t, unsigned long, unsigned int); void endusershell(void); int execvP(const char *, const char *, char * const *); char *fflagstostr(unsigned long); int getdomainname(char *, int); int getgrouplist(const char *, int, int *, int *); # 1 "/usr/include/gethostuuid.h" 1 3 4 # 39 "/usr/include/gethostuuid.h" 3 4 int gethostuuid(uuid_t, const struct timespec *) ; # 654 "/usr/include/unistd.h" 2 3 4 mode_t getmode(const void *, mode_t); int getpeereid(int, uid_t *, gid_t *); int getsgroups_np(int *, uuid_t); char *getusershell(void); int getwgroups_np(int *, uuid_t); int initgroups(const char *, int); int iruserok(unsigned long, int, const char *, const char *); int iruserok_sa(const void *, int, int, const char *, const char *); int issetugid(void); char *mkdtemp(char *); int mknod(const char *, mode_t, dev_t); int mkpath_np(const char *path, mode_t omode) ; int mkstemp(char *); int mkstemps(char *, int); char *mktemp(char *); int nfssvc(int, void *); int profil(char *, size_t, unsigned long, unsigned int); int pthread_setugid_np(uid_t, gid_t); int pthread_getugid_np( uid_t *, gid_t *); int rcmd(char **, int, const char *, const char *, const char *, int *); int rcmd_af(char **, int, const char *, const char *, const char *, int *, int); int reboot(int); int revoke(const char *); int rresvport(int *); int rresvport_af(int *, int); int ruserok(const char *, int, const char *, const char *); int setdomainname(const char *, int); int setgroups(int, const gid_t *); void sethostid(long); int sethostname(const char *, int); void setkey(const char *) __asm("_" "setkey" ); int setlogin(const char *); void *setmode(const char *) __asm("_" "setmode" ); int setrgid(gid_t); int setruid(uid_t); int setsgroups_np(int, const uuid_t); void setusershell(void); int setwgroups_np(int, const uuid_t); int strtofflags(char **, unsigned long *, unsigned long *); int swapon(const char *); int syscall(int, ...); int ttyslot(void); int undelete(const char *); int unwhiteout(const char *); void *valloc(size_t); extern char *suboptarg; int getsubopt(char **, char * const *, char **); int fgetattrlist(int,void*,void*,size_t,unsigned int) ; int fsetattrlist(int,void*,void*,size_t,unsigned int) ; int getattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "getattrlist" ); int setattrlist(const char*,void*,void*,size_t,unsigned int) __asm("_" "setattrlist" ); int exchangedata(const char*,const char*,unsigned int); int getdirentriesattr(int,void*,void*,size_t,unsigned int*,unsigned int*,unsigned int*,unsigned int); # 731 "/usr/include/unistd.h" 3 4 struct fssearchblock; struct searchstate; int searchfs(const char *, struct fssearchblock *, unsigned long *, unsigned int, unsigned int, struct searchstate *); int fsctl(const char *,unsigned long,void*,unsigned int); int ffsctl(int,unsigned long,void*,unsigned int) ; int fsync_volume_np(int, int) ; int sync_volume_np(const char *, int) ; extern int optreset; # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_UNISTD_H" to "1" ================================================================================ TEST check from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:77) TESTING: check from config.headers(config/BuildSystem/config/headers.py:77) Checks for "header", and defines HAVE_"header" if found Checking for header: netinet/in.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/netinet/in.h" 1 3 4 # 66 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 67 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 68 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 69 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 71 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 73 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 75 "/usr/include/netinet/in.h" 2 3 4 # 1 "/usr/include/sys/socket.h" 1 3 4 # 75 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 76 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/machine/_param.h" 1 3 4 # 29 "/usr/include/machine/_param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 30 "/usr/include/machine/_param.h" 2 3 4 # 78 "/usr/include/sys/socket.h" 2 3 4 # 93 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_sa_family_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sa_family_t.h" 3 4 typedef __uint8_t sa_family_t; # 94 "/usr/include/sys/socket.h" 2 3 4 # 1 "/usr/include/sys/_types/_socklen_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_socklen_t.h" 3 4 typedef __darwin_socklen_t socklen_t; # 95 "/usr/include/sys/socket.h" 2 3 4 # 105 "/usr/include/sys/socket.h" 3 4 # 1 "/usr/include/sys/_types/_iovec_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_iovec_t.h" 3 4 struct iovec { void * iov_base; size_t iov_len; }; # 106 "/usr/include/sys/socket.h" 2 3 4 # 190 "/usr/include/sys/socket.h" 3 4 struct linger { int l_onoff; int l_linger; }; # 208 "/usr/include/sys/socket.h" 3 4 struct so_np_extensions { u_int32_t npx_flags; u_int32_t npx_mask; }; # 283 "/usr/include/sys/socket.h" 3 4 struct sockaddr { __uint8_t sa_len; sa_family_t sa_family; char sa_data[14]; }; # 296 "/usr/include/sys/socket.h" 3 4 struct sockproto { __uint16_t sp_family; __uint16_t sp_protocol; }; # 316 "/usr/include/sys/socket.h" 3 4 struct sockaddr_storage { __uint8_t ss_len; sa_family_t ss_family; char __ss_pad1[((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t))]; __int64_t __ss_align; char __ss_pad2[(128 - sizeof(__uint8_t) - sizeof(sa_family_t) - ((sizeof(__int64_t)) - sizeof(__uint8_t) - sizeof(sa_family_t)) - (sizeof(__int64_t)))]; }; # 416 "/usr/include/sys/socket.h" 3 4 struct msghdr { void *msg_name; socklen_t msg_namelen; struct iovec *msg_iov; int msg_iovlen; void *msg_control; socklen_t msg_controllen; int msg_flags; }; # 457 "/usr/include/sys/socket.h" 3 4 struct cmsghdr { socklen_t cmsg_len; int cmsg_level; int cmsg_type; }; # 548 "/usr/include/sys/socket.h" 3 4 struct sf_hdtr { struct iovec *headers; int hdr_cnt; struct iovec *trailers; int trl_cnt; }; int accept(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "accept" ); int bind(int, const struct sockaddr *, socklen_t) __asm("_" "bind" ); int connect(int, const struct sockaddr *, socklen_t) __asm("_" "connect" ); int getpeername(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getpeername" ); int getsockname(int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "getsockname" ); int getsockopt(int, int, int, void * restrict, socklen_t * restrict); int listen(int, int) __asm("_" "listen" ); ssize_t recv(int, void *, size_t, int) __asm("_" "recv" ); ssize_t recvfrom(int, void *, size_t, int, struct sockaddr * restrict, socklen_t * restrict) __asm("_" "recvfrom" ); ssize_t recvmsg(int, struct msghdr *, int) __asm("_" "recvmsg" ); ssize_t send(int, const void *, size_t, int) __asm("_" "send" ); ssize_t sendmsg(int, const struct msghdr *, int) __asm("_" "sendmsg" ); ssize_t sendto(int, const void *, size_t, int, const struct sockaddr *, socklen_t) __asm("_" "sendto" ); int setsockopt(int, int, int, const void *, socklen_t); int shutdown(int, int); int sockatmark(int) ; int socket(int, int, int); int socketpair(int, int, int, int *) __asm("_" "socketpair" ); int sendfile(int, int, off_t, off_t *, struct sf_hdtr *, int); void pfctlinput(int, struct sockaddr *); # 82 "/usr/include/netinet/in.h" 2 3 4 # 301 "/usr/include/netinet/in.h" 3 4 struct in_addr { in_addr_t s_addr; }; # 374 "/usr/include/netinet/in.h" 3 4 struct sockaddr_in { __uint8_t sin_len; sa_family_t sin_family; in_port_t sin_port; struct in_addr sin_addr; char sin_zero[8]; }; # 393 "/usr/include/netinet/in.h" 3 4 struct ip_opts { struct in_addr ip_dst; char ip_opts[40]; }; # 501 "/usr/include/netinet/in.h" 3 4 struct ip_mreq { struct in_addr imr_multiaddr; struct in_addr imr_interface; }; struct ip_mreqn { struct in_addr imr_multiaddr; struct in_addr imr_address; int imr_ifindex; }; #pragma pack(4) struct ip_mreq_source { struct in_addr imr_multiaddr; struct in_addr imr_sourceaddr; struct in_addr imr_interface; }; struct group_req { uint32_t gr_interface; struct sockaddr_storage gr_group; }; struct group_source_req { uint32_t gsr_interface; struct sockaddr_storage gsr_group; struct sockaddr_storage gsr_source; }; # 549 "/usr/include/netinet/in.h" 3 4 struct __msfilterreq { uint32_t msfr_ifindex; uint32_t msfr_fmode; uint32_t msfr_nsrcs; uint32_t __msfr_align; struct sockaddr_storage msfr_group; struct sockaddr_storage *msfr_srcs; }; #pragma pack() struct sockaddr; int setipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t, uint32_t, struct in_addr *) ; int getipv4sourcefilter(int, struct in_addr, struct in_addr, uint32_t *, uint32_t *, struct in_addr *) ; int setsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t, uint32_t, struct sockaddr_storage *) ; int getsourcefilter(int, uint32_t, struct sockaddr *, socklen_t, uint32_t *, uint32_t *, struct sockaddr_storage *) ; # 612 "/usr/include/netinet/in.h" 3 4 struct in_pktinfo { unsigned int ipi_ifindex; struct in_addr ipi_spec_dst; struct in_addr ipi_addr; }; # 654 "/usr/include/netinet/in.h" 3 4 # 1 "/usr/include/netinet6/in6.h" 1 3 4 # 152 "/usr/include/netinet6/in6.h" 3 4 struct in6_addr { union { __uint8_t __u6_addr8[16]; __uint16_t __u6_addr16[8]; __uint32_t __u6_addr32[4]; } __u6_addr; }; # 170 "/usr/include/netinet6/in6.h" 3 4 struct sockaddr_in6 { __uint8_t sin6_len; sa_family_t sin6_family; in_port_t sin6_port; __uint32_t sin6_flowinfo; struct in6_addr sin6_addr; __uint32_t sin6_scope_id; }; # 212 "/usr/include/netinet6/in6.h" 3 4 extern const struct in6_addr in6addr_any; extern const struct in6_addr in6addr_loopback; extern const struct in6_addr in6addr_nodelocal_allnodes; extern const struct in6_addr in6addr_linklocal_allnodes; extern const struct in6_addr in6addr_linklocal_allrouters; extern const struct in6_addr in6addr_linklocal_allv2routers; # 528 "/usr/include/netinet6/in6.h" 3 4 struct ipv6_mreq { struct in6_addr ipv6mr_multiaddr; unsigned int ipv6mr_interface; }; struct in6_pktinfo { struct in6_addr ipi6_addr; unsigned int ipi6_ifindex; }; struct ip6_mtuinfo { struct sockaddr_in6 ip6m_addr; uint32_t ip6m_mtu; }; # 624 "/usr/include/netinet6/in6.h" 3 4 struct cmsghdr; extern int inet6_option_space(int); extern int inet6_option_init(void *, struct cmsghdr **, int); extern int inet6_option_append(struct cmsghdr *, const __uint8_t *, int, int); extern __uint8_t *inet6_option_alloc(struct cmsghdr *, int, int, int); extern int inet6_option_next(const struct cmsghdr *, __uint8_t **); extern int inet6_option_find(const struct cmsghdr *, __uint8_t **, int); extern size_t inet6_rthdr_space(int, int); extern struct cmsghdr *inet6_rthdr_init(void *, int); extern int inet6_rthdr_add(struct cmsghdr *, const struct in6_addr *, unsigned int); extern int inet6_rthdr_lasthop(struct cmsghdr *, unsigned int); extern int inet6_rthdr_segments(const struct cmsghdr *); extern struct in6_addr *inet6_rthdr_getaddr(struct cmsghdr *, int); extern int inet6_rthdr_getflags(const struct cmsghdr *, int); extern int inet6_opt_init(void *, socklen_t); extern int inet6_opt_append(void *, socklen_t, int, __uint8_t, socklen_t, __uint8_t, void **); extern int inet6_opt_finish(void *, socklen_t, int); extern int inet6_opt_set_val(void *, int, void *, socklen_t); extern int inet6_opt_next(void *, socklen_t, int, __uint8_t *, socklen_t *, void **); extern int inet6_opt_find(void *, socklen_t, int, __uint8_t, socklen_t *, void **); extern int inet6_opt_get_val(void *, int, void *, socklen_t); extern socklen_t inet6_rth_space(int, int); extern void *inet6_rth_init(void *, socklen_t, int, int); extern int inet6_rth_add(void *, const struct in6_addr *); extern int inet6_rth_reverse(const void *, void *); extern int inet6_rth_segments(const void *); extern struct in6_addr *inet6_rth_getaddr(const void *, int); extern void addrsel_policy_init(void); # 655 "/usr/include/netinet/in.h" 2 3 4 int bindresvport(int, struct sockaddr_in *); struct sockaddr; int bindresvport_sa(int, struct sockaddr *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_NETINET_IN_H" to "1" ================================================================================ TEST checkRecursiveMacros from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:218) TESTING: checkRecursiveMacros from config.headers(config/BuildSystem/config/headers.py:218) Checks that the preprocessor allows recursive macros, and if not defines HAVE_BROKEN_RECURSIVE_MACRO Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" void a(int i, int j) {} #define a(b) a(b,__LINE__) int main() { a(0); ; return 0; } ================================================================================ TEST configureCacheDetails from config.utilities.cacheDetails(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/cacheDetails.py:78) TESTING: configureCacheDetails from config.utilities.cacheDetails(config/BuildSystem/config/utilities/cacheDetails.py:78) Try to determine the size and associativity of the cache. Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c: In function 'getconf_LEVEL1_DCACHE_SIZE': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c:4:56: error: '_SC_LEVEL1_DCACHE_SIZE' undeclared (first use in this function) long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c:4:56: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val = sysconf(_SC_LEVEL1_DCACHE_SIZE); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { ; return 0; } Popping language C Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_SIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_SIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32768; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_SIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_SIZE" to "32768" Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_LINESIZE() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_LINESIZE","r"); fscanf(f,"%ld",&val); pclose(f); return (16 <= val && val <= 2147483647) ? val : 32; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_LINESIZE()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_LINESIZE" to "32" Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include long getconf_LEVEL1_DCACHE_ASSOC() { long val=-1; FILE *f = popen("getconf LEVEL1_DCACHE_ASSOC","r"); fscanf(f,"%ld",&val); pclose(f); return (0 <= val && val <= 2147483647) ? val : 2; } int main() { FILE *output = fopen("conftestval","w"); if (!output) return 1; fprintf(output,"%ld",getconf_LEVEL1_DCACHE_ASSOC()); fclose(output);; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails/conftest Popping language C Defined "LEVEL1_DCACHE_ASSOC" to "2" ================================================================================ TEST check_siginfo_t from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:46) TESTING: check_siginfo_t from config.types(config/BuildSystem/config/types.py:46) Checks if siginfo_t exists in signal.h. This check is for windows, and C89 check. Checking for type: siginfo_t All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:11: warning: unused variable 'a' [-Wunused-variable] siginfo_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { siginfo_t a;; return 0; } siginfo_t found Defined "HAVE_SIGINFO_T" to "1" ================================================================================ TEST check__int64 from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:52) TESTING: check__int64 from config.types(config/BuildSystem/config/types.py:52) Checks if __int64 exists. This is primarily for windows. Checking for type: __int64 Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:1: error: unknown type name '__int64' __int64 a;; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] __int64 a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { __int64 a;; return 0; } __int64 found ================================================================================ TEST checkSizeTypes from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:58) TESTING: checkSizeTypes from config.types(config/BuildSystem/config/types.py:58) Checks for types associated with sizes, such as size_t. Checking for type: size_t Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] size_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { size_t a;; return 0; } size_t found ================================================================================ TEST checkFileTypes from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:68) TESTING: checkFileTypes from config.types(config/BuildSystem/config/types.py:68) Checks for types associated with files, such as mode_t, off_t, etc. Checking for type: mode_t Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:8: warning: unused variable 'a' [-Wunused-variable] mode_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { mode_t a;; return 0; } mode_t found Checking for type: off_t Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] off_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { off_t a;; return 0; } off_t found ================================================================================ TEST checkIntegerTypes from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:63) TESTING: checkIntegerTypes from config.types(config/BuildSystem/config/types.py:63) Checks for types associated with integers, such as int32_t. Checking for type: int32_t Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:9: warning: unused variable 'a' [-Wunused-variable] int32_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { int32_t a;; return 0; } int32_t found ================================================================================ TEST checkPID from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:74) TESTING: checkPID from config.types(config/BuildSystem/config/types.py:74) Checks for pid_t, and defines it if necessary Checking for type: pid_t Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:13:7: warning: unused variable 'a' [-Wunused-variable] pid_t a;; ^ Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #endif int main() { pid_t a;; return 0; } pid_t found ================================================================================ TEST checkUID from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:78) TESTING: checkUID from config.types(config/BuildSystem/config/types.py:78) Checks for uid_t and gid_t, and defines them if necessary Source: #include "confdefs.h" #include "conffix.h" #include Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c" 2 # 1 "/usr/include/sys/types.h" 1 3 4 # 72 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 73 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 76 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 70 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 71 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 80 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 163 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c" 2 ================================================================================ TEST checkSignal from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:85) TESTING: checkSignal from config.types(config/BuildSystem/config/types.py:85) Checks the return type of signal() and defines RETSIGTYPE to that type name Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef signal #undef signal #endif #ifdef __cplusplus extern "C" void (*signal (int, void(*)(int)))(int); #else void (*signal())(); #endif int main() { ; return 0; } Defined "RETSIGTYPE" to "void" ================================================================================ TEST checkC99Complex from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:106) TESTING: checkC99Complex from config.types(config/BuildSystem/config/types.py:106) Check for complex numbers in in C99 std Note that since PETSc source code uses _Complex we test specifically for that, not complex Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:6:17: warning: variable 'x' set but not used [-Wunused-but-set-variable] double _Complex x; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { double _Complex x; x = I; ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_C99_COMPLEX" to "1" ================================================================================ TEST checkCxxComplex from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:117) TESTING: checkCxxComplex from config.types(config/BuildSystem/config/types.py:117) Check for complex numbers in namespace std Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { std::complex x; ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_CXX_COMPLEX" to "1" Popping language Cxx ================================================================================ TEST checkFortranKind from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:138) TESTING: checkFortranKind from config.types(config/BuildSystem/config/types.py:138) Checks whether selected_int_kind etc work USE_FORTRANKIND Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.F Successful compile: Source: program main integer(kind=selected_int_kind(10)) i real(kind=selected_real_kind(10)) d end Defined "USE_FORTRANKIND" to "1" Popping language FC ================================================================================ TEST checkConst from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:150) TESTING: checkConst from config.types(config/BuildSystem/config/types.py:150) Checks for working const, and if not found defines it to empty string Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:30:9: warning: 't' is used uninitialized in this function [-Wuninitialized] *t++ = 0; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:46:25: warning: 'b' is used uninitialized in this function [-Wuninitialized] struct s *b; b->j = 5; ^ Source: #include "confdefs.h" #include "conffix.h" int main() { /* Ultrix mips cc rejects this. */ typedef int charset[2]; const charset x; /* SunOS 4.1.1 cc rejects this. */ char const *const *ccp; char **p; /* NEC SVR4.0.2 mips cc rejects this. */ struct point {int x, y;}; static struct point const zero = {0,0}; /* AIX XL C 1.02.0.0 rejects this. It does not let you subtract one const X* pointer from another in an arm of an if-expression whose if-part is not a constant expression */ const char *g = "string"; ccp = &g + (g ? g-g : 0); /* HPUX 7.0 cc rejects these. */ ++ccp; p = (char**) ccp; ccp = (char const *const *) p; /* This section avoids unused variable warnings */ if (zero.x); if (x[0]); { /* SCO 3.2v4 cc rejects this. */ char *t; char const *s = 0 ? (char *) 0 : (char const *) 0; *t++ = 0; if (*s); } { /* Someone thinks the Sun supposedly-ANSI compiler will reject this. */ int x[] = {25, 17}; const int *foo = &x[0]; ++foo; } { /* Sun SC1.0 ANSI compiler rejects this -- but not the above. */ typedef const int *iptr; iptr p = 0; ++p; } { /* AIX XL C 1.02.0.0 rejects this saying "k.c", line 2.27: 1506-025 (S) Operand must be a modifiable lvalue. */ struct s { int j; const int *ap[3]; }; struct s *b; b->j = 5; } { /* ULTRIX-32 V3.1 (Rev 9) vcc rejects this */ const int foo = 10; /* Get rid of unused variable warning */ if (foo); } ; return 0; } ================================================================================ TEST checkEndian from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:206) TESTING: checkEndian from config.types(config/BuildSystem/config/types.py:206) If the machine is big endian, defines WORDS_BIGENDIAN Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if !BYTE_ORDER || !BIG_ENDIAN || !LITTLE_ENDIAN bogus endian macros #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:11:3: error: unknown type name 'not' not big endian ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c:11:11: error: expected '=', ',', ';', 'asm' or '__attribute__' before 'endian' not big endian ^ Source: #include "confdefs.h" #include "conffix.h" #include #ifdef HAVE_SYS_PARAM_H #include #endif int main() { #if BYTE_ORDER != BIG_ENDIAN not big endian #endif ; return 0; } ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: char Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(char)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_CHAR" to "1" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: void * Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(void *)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_VOID_P" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: short Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(short)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_SHORT" to "2" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: int Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(int)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_INT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: long long Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(long long)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_LONG_LONG" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: float Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(float)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_FLOAT" to "4" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: double Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(double)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_DOUBLE" to "8" ================================================================================ TEST checkSizeof from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:259) TESTING: checkSizeof from config.types(config/BuildSystem/config/types.py:259) Determines the size of type "typeName", and defines SIZEOF_"typeName" to be the size Checking for size of type: size_t Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(size_t)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_SIZE_T" to "8" ================================================================================ TEST checkBitsPerByte from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:310) TESTING: checkBitsPerByte from config.types(config/BuildSystem/config/types.py:310) Determine the nubmer of bits per byte and define BITS_PER_BYTE Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if STDC_HEADERS #include #include #endif int main() { FILE *f = fopen("conftestval", "w"); char val[2]; int i = 0; if (!f) exit(1); val[0]='\1'; val[1]='\0'; while(val[0]) {val[0] <<= 1; i++;} fprintf(f, "%d\n", i); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Defined "BITS_PER_BYTE" to "8" ================================================================================ TEST checkVisibility from config.types(/Users/justin/Software/petsc/config/BuildSystem/config/types.py:356) TESTING: checkVisibility from config.types(config/BuildSystem/config/types.py:356) ================================================================================ TEST configureMemAlign from PETSc.options.memAlign(/Users/justin/Software/petsc/config/PETSc/options/memAlign.py:30) TESTING: configureMemAlign from PETSc.options.memAlign(config/PETSc/options/memAlign.py:30) Choose alignment Defined "MEMALIGN" to "16" Memory alignment is 16 ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [socket] in library ['socket', 'nsl'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char socket(); static void _check_socket() { socket(); } int main() { _check_socket();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lsocket -lnsl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lsocket collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [handle_sigfpes] in library ['fpe'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char handle_sigfpes(); static void _check_handle_sigfpes() { handle_sigfpes(); } int main() { _check_handle_sigfpes();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lfpe -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lfpe collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkMath from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:251) TESTING: checkMath from config.libraries(config/BuildSystem/config/libraries.py:251) Check for sin() in libm, the math library Checking for functions [sin floor log10 pow] in library [''] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_sin': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:41: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_sin() { double x = 0,y; y = sin(x); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_floor': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:8:43: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_floor() { double x = 0,y; y = floor(x); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_log10': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:11:43: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_log10() { double x = 0,y; y = log10(x); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_pow': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:14:41: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_pow() { double x = 0,y ; y = pow(x, x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double sin(double); static void _check_sin() { double x = 0,y; y = sin(x); ; } double floor(double); static void _check_floor() { double x = 0,y; y = floor(x); ; } double log10(double); static void _check_log10() { double x = 0,y; y = log10(x); ; } double pow(double, double); static void _check_pow() { double x = 0,y ; y = pow(x, x); ; } int main() { _check_sin(); _check_floor(); _check_log10(); _check_pow();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Math functions are linked in by default ================================================================================ TEST checkMathErf from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:267) TESTING: checkMathErf from config.libraries(config/BuildSystem/config/libraries.py:267) Check for erf() in libm, the math library Checking for functions [erf] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_erf': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:41: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_erf() { double x = 0,y; y = erf(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double erf(double); static void _check_erf() { double x = 0,y; y = erf(x); ; } int main() { _check_erf();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C erf() found Defined "HAVE_ERF" to "1" ================================================================================ TEST checkMathTgamma from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:276) TESTING: checkMathTgamma from config.libraries(config/BuildSystem/config/libraries.py:276) Check for tgama() in libm, the math library Checking for functions [tgamma] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_tgamma': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:44: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_tgamma() { double x = 0,y; y = tgamma(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double tgamma(double); static void _check_tgamma() { double x = 0,y; y = tgamma(x); ; } int main() { _check_tgamma();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C tgamma() found Defined "HAVE_TGAMMA" to "1" ================================================================================ TEST checkMathFenv from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:285) TESTING: checkMathFenv from config.libraries(config/BuildSystem/config/libraries.py:285) Checks if can be used with FE_DFL_ENV Checking for functions [fesetenv] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_fesetenv() { fesetenv(FE_DFL_ENV);; } int main() { _check_fesetenv();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Defined "HAVE_FENV_H" to "1" ================================================================================ TEST checkMathLog2 from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:293) TESTING: checkMathLog2 from config.libraries(config/BuildSystem/config/libraries.py:293) Check for log2() in libm, the math library Checking for functions [log2] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_log2': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:42: warning: variable 'y' set but not used [-Wunused-but-set-variable] static void _check_log2() { double x = 1,y; y = log2(x); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ double log2(double); static void _check_log2() { double x = 1,y; y = log2(x); ; } int main() { _check_log2();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C log2() found Defined "HAVE_LOG2" to "1" ================================================================================ TEST checkCompression from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:302) TESTING: checkCompression from config.libraries(config/BuildSystem/config/libraries.py:302) Check for libz, the compression library Checking for functions [compress uncompress] in library [''] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_compress': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:119: warning: variable 'ret' set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_uncompress': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:8:121: warning: variable 'ret' set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_compress", referenced from: _main in conftest.o "_uncompress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for functions [compress uncompress] in library ['z'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_compress': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:119: warning: variable 'ret' set but not used [-Wunused-but-set-variable] static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_uncompress': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:8:121: warning: variable 'ret' set but not used [-Wunused-but-set-variable] static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ int compress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_compress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = compress(dest, &destLen, source, sourceLen); ; } int uncompress(char *dest, unsigned long *destLen, const char *source, unsigned long sourceLen); static void _check_uncompress() { char *dest = 0; const char *source = 0; unsigned long destLen = 0, sourceLen = 0; int ret = 0; ret = uncompress(dest, &destLen, source, sourceLen); ; } int main() { _check_compress(); _check_uncompress();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBZ" to "1" Popping language C Using libz for the compression library ================================================================================ TEST checkRealtime from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:323) TESTING: checkRealtime from config.libraries(config/BuildSystem/config/libraries.py:323) Check for presence of clock_gettime() in realtime library (POSIX Realtime extensions) Checking for functions [clock_gettime] in library [''] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_clock_gettime': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:58: warning: implicit declaration of function 'clock_gettime' [-Wimplicit-function-declaration] static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:72: error: 'CLOCK_REALTIME' undeclared (first use in this function) static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:72: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Checking for functions [clock_gettime] in library ['rt'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c: In function '_check_clock_gettime': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:58: warning: implicit declaration of function 'clock_gettime' [-Wimplicit-function-declaration] static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:72: error: 'CLOCK_REALTIME' undeclared (first use in this function) static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:5:72: note: each undeclared identifier is reported only once for each function it appears in Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_clock_gettime() { struct timespec tp; clock_gettime(CLOCK_REALTIME,&tp);; } int main() { _check_clock_gettime();; return 0; } Compile failed inside link Popping language C Warning: No realtime library found ================================================================================ TEST checkDynamic from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:339) TESTING: checkDynamic from config.libraries(config/BuildSystem/config/libraries.py:339) Check for the header and libraries necessary for dynamic library manipulation Checking for functions [dlopen] in library ['dl'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char dlopen(); static void _check_dlopen() { dlopen(); } int main() { _check_dlopen();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBDL" to "1" Popping language C Checking for header: dlfcn.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/dlfcn.h" 1 3 4 # 37 "/usr/include/dlfcn.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 38 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdbool.h" 1 3 4 # 41 "/usr/include/dlfcn.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 42 "/usr/include/dlfcn.h" 2 3 4 # 45 "/usr/include/dlfcn.h" 3 4 typedef struct dl_info { const char *dli_fname; void *dli_fbase; const char *dli_sname; void *dli_saddr; } Dl_info; extern int dladdr(const void *, Dl_info *); extern int dlclose(void * __handle); extern char * dlerror(void); extern void * dlopen(const char * __path, int __mode); extern void * dlsym(void * __handle, const char * __symbol); extern _Bool dlopen_preflight(const char* __path) ; # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_DLFCN_H" to "1" ================================================================================ TEST configureLibraryOptions from PETSc.options.libraryOptions(/Users/justin/Software/petsc/config/PETSc/options/libraryOptions.py:37) TESTING: configureLibraryOptions from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:37) Sets PETSC_USE_DEBUG, PETSC_USE_INFO, PETSC_USE_LOG, PETSC_USE_CTABLE and PETSC_USE_FORTRAN_KERNELS Defined "USE_LOG" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -qversion Defined "USE_MALLOC_COALESCED" to "1" Defined "USE_INFO" to "1" Defined "USE_CTABLE" to "1" Defined "USE_BACKWARD_LOOP" to "1" **********Checking if running on BGL/IBM detected Checking for functions [bgl_perfctr_void] in library [''] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char bgl_perfctr_void(); static void _check_bgl_perfctr_void() { bgl_perfctr_void(); } int main() { _check_bgl_perfctr_void();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_bgl_perfctr_void", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for functions [ADIOI_BGL_Open] in library [''] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char ADIOI_BGL_Open(); static void _check_ADIOI_BGL_Open() { ADIOI_BGL_Open(); } int main() { _check_ADIOI_BGL_Open();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_ADIOI_BGL_Open", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C *********BGL/IBM test failure Defined "Alignx(a,b)" to " " ================================================================================ TEST configureISColorValueType from PETSc.options.libraryOptions(/Users/justin/Software/petsc/config/PETSc/options/libraryOptions.py:89) TESTING: configureISColorValueType from PETSc.options.libraryOptions(config/PETSc/options/libraryOptions.py:89) Sets PETSC_IS_COLOR_VALUE_TYPE, MPIU_COLORING_VALUE, IS_COLORING_MAX required by ISColor Defined "MPIU_COLORING_VALUE" to "MPI_UNSIGNED_SHORT" Defined "IS_COLORING_MAX" to "65535" Defined "IS_COLOR_VALUE_TYPE" to "short" Defined "IS_COLOR_VALUE_TYPE_SIZE" to "PETSC_SIZEOF_SHORT" ================================================================================ TEST configureCPURelax from config.atomics(/Users/justin/Software/petsc/config/BuildSystem/config/atomics.py:17) TESTING: configureCPURelax from config.atomics(config/BuildSystem/config/atomics.py:17) Definitions for cpu relax assembly instructions All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("rep; nop" ::: "memory");; return 0; } Defined "CPU_RELAX()" to "asm volatile("rep; nop" ::: "memory")" ================================================================================ TEST configureMemoryBarriers from config.atomics(/Users/justin/Software/petsc/config/BuildSystem/config/atomics.py:36) TESTING: configureMemoryBarriers from config.atomics(config/BuildSystem/config/atomics.py:36) Definitions for memory barrier instructions Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("mfence":::"memory"); return 0; } Defined "MEMORY_BARRIER()" to "asm volatile("mfence":::"memory")" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("lfence":::"memory"); return 0; } Defined "READ_MEMORY_BARRIER()" to "asm volatile("lfence":::"memory")" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" int main() { asm volatile("sfence":::"memory"); return 0; } Defined "WRITE_MEMORY_BARRIER()" to "asm volatile("sfence":::"memory")" ================================================================================ TEST checkMemcmp from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:110) TESTING: checkMemcmp from config.functions(config/BuildSystem/config/functions.py:110) Check for 8-bit clean memcmp Making executable to test memcmp() All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include void exit(int); int main() { char c0 = 0x40; char c1 = (char) 0x80; char c2 = (char) 0x81; exit(memcmp(&c0, &c2, 1) < 0 && memcmp(&c1, &c2, 1) < 0 ? 0 : 1); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest ================================================================================ TEST checkSysinfo from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:135) TESTING: checkSysinfo from config.functions(config/BuildSystem/config/functions.py:135) Check whether sysinfo takes three arguments, and if it does define HAVE_SYSINFO_3ARG Checking for functions [sysinfo] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sysinfo(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sysinfo) || defined (__stub___sysinfo) sysinfo_will_always_fail_with_ENOSYS(); #else sysinfo(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_sysinfo", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ================================================================================ TEST checkVPrintf from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:158) TESTING: checkVPrintf from config.functions(config/BuildSystem/config/functions.py:158) Checks whether vprintf requires a char * last argument, and if it does defines HAVE_VPRINTF_CHAR Checking for functions [vprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vprintf' char vprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vprintf) || defined (__stub___vprintf) vprintf_will_always_fail_with_ENOSYS(); #else vprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_VPRINTF" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vprintf( "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl ================================================================================ TEST checkVFPrintf from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:165) TESTING: checkVFPrintf from config.functions(config/BuildSystem/config/functions.py:165) Checks whether vfprintf requires a char * last argument, and if it does defines HAVE_VFPRINTF_CHAR Checking for functions [vfprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vfprintf' char vfprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vfprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vfprintf) || defined (__stub___vfprintf) vfprintf_will_always_fail_with_ENOSYS(); #else vfprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_VFPRINTF" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp; vfprintf(stdout, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl ================================================================================ TEST checkVSNPrintf from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:172) TESTING: checkVSNPrintf from config.functions(config/BuildSystem/config/functions.py:172) Checks whether vsnprintf requires a char * last argument, and if it does defines HAVE_VSNPRINTF_CHAR Checking for functions [_vsnprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__vsnprintf) || defined (__stub____vsnprintf) _vsnprintf_will_always_fail_with_ENOSYS(); #else _vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__vsnprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [vsnprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'vsnprintf' char vsnprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char vsnprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_vsnprintf) || defined (__stub___vsnprintf) vsnprintf_will_always_fail_with_ENOSYS(); #else vsnprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_VSNPRINTF" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include int main() { va_list Argp;char str[6]; vsnprintf(str,5, "%d", Argp ); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl ================================================================================ TEST checkNanosleep from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:216) TESTING: checkNanosleep from config.functions(config/BuildSystem/config/functions.py:216) Check for functional nanosleep() - as time.h behaves differently for different compiler flags - like -std=c89 Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { struct timespec tp; tp.tv_sec = 0; tp.tv_nsec = (long)(1e9); nanosleep(&tp,0); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_NANOSLEEP" to "1" ================================================================================ TEST checkSignalHandlerType from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:192) TESTING: checkSignalHandlerType from config.functions(config/BuildSystem/config/functions.py:192) Checks the type of C++ signals handlers, and defines SIGNAL_CAST to the correct value Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include static void myhandler(int sig) {} int main() { signal(SIGFPE,myhandler); ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "SIGNAL_CAST" to " " Popping language Cxx ================================================================================ TEST checkFreeReturnType from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:202) TESTING: checkFreeReturnType from config.functions(config/BuildSystem/config/functions.py:202) Checks whether free returns void or int, and defines HAVE_FREE_RETURN_INT Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:6:25: error: void value not ignored as it ought to be int ierr; void *p; ierr = free(p); return 0; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:6:5: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] int ierr; void *p; ierr = free(p); return 0; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int ierr; void *p; ierr = free(p); return 0; ; return 0; } Compile failed inside link ================================================================================ TEST checkVariableArgumentLists from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:208) TESTING: checkVariableArgumentLists from config.functions(config/BuildSystem/config/functions.py:208) Checks whether the variable argument list functionality is working Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { va_list l1, l2; va_copy(l1, l2); return 0; ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_VA_COPY" to "1" ================================================================================ TEST checkClassify from config.functions(/Users/justin/Software/petsc/config/BuildSystem/config/functions.py:89) TESTING: checkClassify from config.functions(config/BuildSystem/config/functions.py:89) Recursive decompose to rapidly classify functions as found or missing To confirm that a function is missing, we require a compile/link failure with only that function in a compilation unit. In contrast, we can confirm that many functions are present by compiling them all together in a large compilation unit. We optimistically compile everything together, then trim all functions that were named in the error message and bisect the result. The trimming is only an optimization to increase the likelihood of a big-batch compile succeeding; we do not rely on the compiler naming missing functions. Checking for functions [rand getdomainname _sleep snprintf realpath dlsym bzero _getcwd getwd uname _lseek sleep _access lseek usleep dlclose gethostname clock get_nprocs access _snprintf dlerror mkstemp fork getpagesize sbreak memalign sigset getcwd gethostbyname gettimeofday readlink _set_output_format PXFGETARG sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname stricmp] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:16:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:19:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:36:6: warning: conflicting types for built-in function 'fork' char fork(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:48:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:52:6: warning: conflicting types for built-in function 'memmove' char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char _sleep(); char snprintf(); char realpath(); char dlsym(); char bzero(); char _getcwd(); char getwd(); char uname(); char _lseek(); char sleep(); char _access(); char lseek(); char usleep(); char dlclose(); char gethostname(); char clock(); char get_nprocs(); char access(); char _snprintf(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); char sbreak(); char memalign(); char sigset(); char getcwd(); char gethostbyname(); char gettimeofday(); char readlink(); char _set_output_format(); char PXFGETARG(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o "__access", referenced from: _main in conftest.o "__getcwd", referenced from: _main in conftest.o "__lseek", referenced from: _main in conftest.o "__set_output_format", referenced from: _main in conftest.o "__sleep", referenced from: _main in conftest.o "__snprintf", referenced from: _main in conftest.o "_get_nprocs", referenced from: _main in conftest.o "_memalign", referenced from: _main in conftest.o "_sbreak", referenced from: _main in conftest.o "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [rand getdomainname realpath dlsym bzero getwd uname usleep dlclose gethostname clock dlerror mkstemp fork getpagesize] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:17:6: warning: conflicting types for built-in function 'bzero' char bzero(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:26:6: warning: conflicting types for built-in function 'fork' char fork(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char rand(); char getdomainname(); char realpath(); char dlsym(); char bzero(); char getwd(); char uname(); char usleep(); char dlclose(); char gethostname(); char clock(); char dlerror(); char mkstemp(); char fork(); char getpagesize(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_rand) || defined (__stub___rand) rand_will_always_fail_with_ENOSYS(); #else rand(); #endif #if defined (__stub_getdomainname) || defined (__stub___getdomainname) getdomainname_will_always_fail_with_ENOSYS(); #else getdomainname(); #endif #if defined (__stub_realpath) || defined (__stub___realpath) realpath_will_always_fail_with_ENOSYS(); #else realpath(); #endif #if defined (__stub_dlsym) || defined (__stub___dlsym) dlsym_will_always_fail_with_ENOSYS(); #else dlsym(); #endif #if defined (__stub_bzero) || defined (__stub___bzero) bzero_will_always_fail_with_ENOSYS(); #else bzero(); #endif #if defined (__stub_getwd) || defined (__stub___getwd) getwd_will_always_fail_with_ENOSYS(); #else getwd(); #endif #if defined (__stub_uname) || defined (__stub___uname) uname_will_always_fail_with_ENOSYS(); #else uname(); #endif #if defined (__stub_usleep) || defined (__stub___usleep) usleep_will_always_fail_with_ENOSYS(); #else usleep(); #endif #if defined (__stub_dlclose) || defined (__stub___dlclose) dlclose_will_always_fail_with_ENOSYS(); #else dlclose(); #endif #if defined (__stub_gethostname) || defined (__stub___gethostname) gethostname_will_always_fail_with_ENOSYS(); #else gethostname(); #endif #if defined (__stub_clock) || defined (__stub___clock) clock_will_always_fail_with_ENOSYS(); #else clock(); #endif #if defined (__stub_dlerror) || defined (__stub___dlerror) dlerror_will_always_fail_with_ENOSYS(); #else dlerror(); #endif #if defined (__stub_mkstemp) || defined (__stub___mkstemp) mkstemp_will_always_fail_with_ENOSYS(); #else mkstemp(); #endif #if defined (__stub_fork) || defined (__stub___fork) fork_will_always_fail_with_ENOSYS(); #else fork(); #endif #if defined (__stub_getpagesize) || defined (__stub___getpagesize) getpagesize_will_always_fail_with_ENOSYS(); #else getpagesize(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_RAND" to "1" Defined "HAVE_GETDOMAINNAME" to "1" Defined "HAVE_REALPATH" to "1" Defined "HAVE_DLSYM" to "1" Defined "HAVE_BZERO" to "1" Defined "HAVE_GETWD" to "1" Defined "HAVE_UNAME" to "1" Defined "HAVE_USLEEP" to "1" Defined "HAVE_DLCLOSE" to "1" Defined "HAVE_GETHOSTNAME" to "1" Defined "HAVE_CLOCK" to "1" Defined "HAVE_DLERROR" to "1" Defined "HAVE_MKSTEMP" to "1" Defined "HAVE_FORK" to "1" Defined "HAVE_GETPAGESIZE" to "1" Checking for functions [sigset gethostbyname gettimeofday readlink sigaction strcasecmp dlopen drand48 socket memmove signal popen getrusage times time sysctlbyname] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:18:6: warning: conflicting types for built-in function 'strcasecmp' char strcasecmp(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:22:6: warning: conflicting types for built-in function 'memmove' char memmove(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sigset(); char gethostbyname(); char gettimeofday(); char readlink(); char sigaction(); char strcasecmp(); char dlopen(); char drand48(); char socket(); char memmove(); char signal(); char popen(); char getrusage(); char times(); char time(); char sysctlbyname(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sigset) || defined (__stub___sigset) sigset_will_always_fail_with_ENOSYS(); #else sigset(); #endif #if defined (__stub_gethostbyname) || defined (__stub___gethostbyname) gethostbyname_will_always_fail_with_ENOSYS(); #else gethostbyname(); #endif #if defined (__stub_gettimeofday) || defined (__stub___gettimeofday) gettimeofday_will_always_fail_with_ENOSYS(); #else gettimeofday(); #endif #if defined (__stub_readlink) || defined (__stub___readlink) readlink_will_always_fail_with_ENOSYS(); #else readlink(); #endif #if defined (__stub_sigaction) || defined (__stub___sigaction) sigaction_will_always_fail_with_ENOSYS(); #else sigaction(); #endif #if defined (__stub_strcasecmp) || defined (__stub___strcasecmp) strcasecmp_will_always_fail_with_ENOSYS(); #else strcasecmp(); #endif #if defined (__stub_dlopen) || defined (__stub___dlopen) dlopen_will_always_fail_with_ENOSYS(); #else dlopen(); #endif #if defined (__stub_drand48) || defined (__stub___drand48) drand48_will_always_fail_with_ENOSYS(); #else drand48(); #endif #if defined (__stub_socket) || defined (__stub___socket) socket_will_always_fail_with_ENOSYS(); #else socket(); #endif #if defined (__stub_memmove) || defined (__stub___memmove) memmove_will_always_fail_with_ENOSYS(); #else memmove(); #endif #if defined (__stub_signal) || defined (__stub___signal) signal_will_always_fail_with_ENOSYS(); #else signal(); #endif #if defined (__stub_popen) || defined (__stub___popen) popen_will_always_fail_with_ENOSYS(); #else popen(); #endif #if defined (__stub_getrusage) || defined (__stub___getrusage) getrusage_will_always_fail_with_ENOSYS(); #else getrusage(); #endif #if defined (__stub_times) || defined (__stub___times) times_will_always_fail_with_ENOSYS(); #else times(); #endif #if defined (__stub_time) || defined (__stub___time) time_will_always_fail_with_ENOSYS(); #else time(); #endif #if defined (__stub_sysctlbyname) || defined (__stub___sysctlbyname) sysctlbyname_will_always_fail_with_ENOSYS(); #else sysctlbyname(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_SIGSET" to "1" Defined "HAVE_GETHOSTBYNAME" to "1" Defined "HAVE_GETTIMEOFDAY" to "1" Defined "HAVE_READLINK" to "1" Defined "HAVE_SIGACTION" to "1" Defined "HAVE_STRCASECMP" to "1" Defined "HAVE_DLOPEN" to "1" Defined "HAVE_DRAND48" to "1" Defined "HAVE_SOCKET" to "1" Defined "HAVE_MEMMOVE" to "1" Defined "HAVE_SIGNAL" to "1" Defined "HAVE_POPEN" to "1" Defined "HAVE_GETRUSAGE" to "1" Defined "HAVE_TIMES" to "1" Defined "HAVE_TIME" to "1" Defined "HAVE_SYSCTLBYNAME" to "1" Checking for functions [_sleep] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__sleep) || defined (__stub____sleep) _sleep_will_always_fail_with_ENOSYS(); #else _sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__sleep", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [snprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:6: warning: conflicting types for built-in function 'snprintf' char snprintf(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_snprintf) || defined (__stub___snprintf) snprintf_will_always_fail_with_ENOSYS(); #else snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_SNPRINTF" to "1" Checking for functions [_getcwd] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__getcwd) || defined (__stub____getcwd) _getcwd_will_always_fail_with_ENOSYS(); #else _getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__getcwd", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [_lseek] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__lseek) || defined (__stub____lseek) _lseek_will_always_fail_with_ENOSYS(); #else _lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__lseek", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [sleep] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sleep(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sleep) || defined (__stub___sleep) sleep_will_always_fail_with_ENOSYS(); #else sleep(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_SLEEP" to "1" Checking for functions [_access] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__access) || defined (__stub____access) _access_will_always_fail_with_ENOSYS(); #else _access(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__access", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [lseek] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char lseek(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_lseek) || defined (__stub___lseek) lseek_will_always_fail_with_ENOSYS(); #else lseek(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LSEEK" to "1" Checking for functions [get_nprocs] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char get_nprocs(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_get_nprocs) || defined (__stub___get_nprocs) get_nprocs_will_always_fail_with_ENOSYS(); #else get_nprocs(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_get_nprocs", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [access] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char access(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_access) || defined (__stub___access) access_will_always_fail_with_ENOSYS(); #else access(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_ACCESS" to "1" Checking for functions [_snprintf] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _snprintf(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__snprintf) || defined (__stub____snprintf) _snprintf_will_always_fail_with_ENOSYS(); #else _snprintf(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__snprintf", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [sbreak] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char sbreak(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_sbreak) || defined (__stub___sbreak) sbreak_will_always_fail_with_ENOSYS(); #else sbreak(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_sbreak", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [memalign] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char memalign(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_memalign) || defined (__stub___memalign) memalign_will_always_fail_with_ENOSYS(); #else memalign(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_memalign", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [getcwd] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char getcwd(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_getcwd) || defined (__stub___getcwd) getcwd_will_always_fail_with_ENOSYS(); #else getcwd(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_GETCWD" to "1" Checking for functions [_set_output_format] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _set_output_format(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__set_output_format) || defined (__stub____set_output_format) _set_output_format_will_always_fail_with_ENOSYS(); #else _set_output_format(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "__set_output_format", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [stricmp] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char stricmp(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_stricmp) || defined (__stub___stricmp) stricmp_will_always_fail_with_ENOSYS(); #else stricmp(); #endif ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_stricmp", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status ================================================================================ TEST configureMemorySize from config.utilities.getResidentSetSize(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/getResidentSetSize.py:31) TESTING: configureMemorySize from config.utilities.getResidentSetSize(config/BuildSystem/config/utilities/getResidentSetSize.py:31) Try to determine how to measure the memory usage All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize/conftest.c:38:18: warning: implicit declaration of function 'getpagesize' [-Wimplicit-function-declaration] f2 = getpagesize() * ((double)(temp2.ru_maxrss-temp1.ru_maxrss))/(4.0*ARRAYSIZE); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize/conftest.c:58:1: error: expected declaration or statement at end of input } ^ Source: #include "confdefs.h" #include "conffix.h" #include #include #include #include #include #include #include int main() { #define ARRAYSIZE 10000000 int i,*m; struct rusage temp1,temp2; double f0,f1,f2; if (getrusage(RUSAGE_SELF,&temp1)) { printf("Error calling getrusage()\n"); return -1; } m = malloc(ARRAYSIZE*sizeof(int)); if (!m) { printf("Error calling malloc()\n"); return -3; } for (i=0; i .90 && f0 < 1.1) { printf("uses bytes in getrusage()\n"); return 1; if (f1 > .90 && f1 < 1.1) { printf("uses 1024 size chunks in getrusage()\n"); return 2; } else if (f2 > .9 && f2 < 1.1) { printf("uses getpagesize() chunks in getrusage()\n"); return 3; } printf("unable to determine if uses bytes, 1024 or getpagesize() chunks in getrusage()\n"); return -2;; return 0; } Compile failed inside link Defined "USE_BYTES_FOR_SIZE" to "1" output from getrusage() ================================================================================ TEST configureFPTrap from config.utilities.FPTrap(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/FPTrap.py:27) TESTING: configureFPTrap from config.utilities.FPTrap(config/BuildSystem/config/utilities/FPTrap.py:27) Checking the handling of floating point traps Checking for header: sigfpe.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:20: fatal error: sigfpe.h: No such file or directorycompilation terminated.: Checking for header: fpxcp.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:19: fatal error: fpxcp.h: No such file or directorycompilation terminated.: Checking for header: floatingpoint.h Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:27: fatal error: floatingpoint.h: No such file or directorycompilation terminated.: ================================================================================ TEST configureFortranCommandLine from config.utilities.fortranCommandLine(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/fortranCommandLine.py:27) TESTING: configureFortranCommandLine from config.utilities.fortranCommandLine(config/BuildSystem/config/utilities/fortranCommandLine.py:27) Check for the mechanism to retrieve command line arguments in Fortran Defined "HAVE_FORTRAN_GET_COMMAND_ARGUMENT" to "1" Pushing language FC Checking for functions [] in library [''] [] Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.F Successful compile: Source: program main integer i character*(80) arg call get_command_argument(i,arg) end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language FC Popping language FC Pushing language C Defined "HAVE_GFORTRAN_IARGC" to "1" Popping language C Checking for functions [get_command_argument_] in library [''] ['-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-ldl', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-Wl,-rpath,/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-lgfortran', '-lquadmath', '-lm', '-lm'] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char get_command_argument_(); static void _check_get_command_argument_() { get_command_argument_(); } int main() { _check_get_command_argument_();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_get_command_argument_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for functions [getarg_] in library [''] ['-Wl,-rpath,/usr/local/opt/libevent/lib', '-L/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-L/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-ldl', '-lmpi_usempif08', '-lmpi_usempi_ignore_tkr', '-lmpi_mpifh', '-lgfortran', '-Wl,-rpath,/usr/local/opt/libevent/lib', '-Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0', '-Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5', '-lgfortran', '-lquadmath', '-lm', '-lm'] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char getarg_(); static void _check_getarg_() { getarg_(); } int main() { _check_getarg_();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_getarg_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Pushing language C Popping language C Checking for functions [ipxfargc_] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char ipxfargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_ipxfargc_) || defined (__stub___ipxfargc_) ipxfargc__will_always_fail_with_ENOSYS(); #else ipxfargc_(); #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_ipxfargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [f90_unix_MP_iargc] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char f90_unix_MP_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_f90_unix_MP_iargc) || defined (__stub___f90_unix_MP_iargc) f90_unix_MP_iargc_will_always_fail_with_ENOSYS(); #else f90_unix_MP_iargc(); #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_f90_unix_MP_iargc", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [PXFGETARG] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char PXFGETARG(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_PXFGETARG) || defined (__stub___PXFGETARG) PXFGETARG_will_always_fail_with_ENOSYS(); #else PXFGETARG(); #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_PXFGETARG", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [iargc_] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char iargc_(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_iargc_) || defined (__stub___iargc_) iargc__will_always_fail_with_ENOSYS(); #else iargc_(); #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_iargc_", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Checking for functions [GETARG@16] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:12: error: stray '@' in program char GETARG@16(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:13:13: error: expected '=', ',', ';', 'asm' or '__attribute__' before numeric constant char GETARG@16(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:21:27: error: missing ')' after "defined" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:21:28: error: missing binary operator before token "16" #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:24:7: error: stray '@' in program GETARG@16(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:24:1: error: 'GETARG' undeclared (first use in this function) GETARG@16(); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:24:1: note: each undeclared identifier is reported only once for each function it appears in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c:24:8: error: expected ';' before numeric constant GETARG@16(); ^ Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char GETARG@16(); #ifdef __cplusplus } #endif int main() { #if defined (__stub_GETARG@16) || defined (__stub___GETARG@16) GETARG@16_will_always_fail_with_ENOSYS(); #else GETARG@16(); #endif ; return 0; } Compile failed inside link Checking for functions [_gfortran_iargc] Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* System header to define __stub macros and hopefully no other prototypes since they would conflict with our 'char funcname()' declaration below. */ #include /* Override any gcc2 internal prototype to avoid an error. */ #ifdef __cplusplus extern "C" { #endif /* We use char because int might match the return type of a gcc2 builtin and then its argument prototype would still apply. */ char _gfortran_iargc(); #ifdef __cplusplus } #endif int main() { #if defined (__stub__gfortran_iargc) || defined (__stub____gfortran_iargc) _gfortran_iargc_will_always_fail_with_ENOSYS(); #else _gfortran_iargc(); #endif ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lgfortran -Wl,-rpath,/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lgfortran -lquadmath -lm -lm Defined "HAVE__GFORTRAN_IARGC" to "1" ================================================================================ TEST configureFeatureTestMacros from config.utilities.featureTestMacros(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/featureTestMacros.py:13) TESTING: configureFeatureTestMacros from config.utilities.featureTestMacros(config/BuildSystem/config/utilities/featureTestMacros.py:13) Checks if certain feature test macros are support All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c:4:20: fatal error: sysctl.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #define _POSIX_C_SOURCE 200112L #include int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _BSD_SOURCE #include int main() { ; return 0; } Defined "_BSD_SOURCE" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #define _DEFAULT_SOURCE #include int main() { ; return 0; } Defined "_DEFAULT_SOURCE" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c:7:1: error: unknown type name 'cpu_set_t' cpu_set_t mset; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros/conftest.c:8:1: warning: implicit declaration of function 'CPU_ZERO' [-Wimplicit-function-declaration] CPU_ZERO(&mset);; ^ Source: #include "confdefs.h" #include "conffix.h" #define _GNU_SOURCE #include int main() { cpu_set_t mset; CPU_ZERO(&mset);; return 0; } ================================================================================ TEST configureMissingDefines from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:57) TESTING: configureMissingDefines from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:57) Checks for limits All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_LIMITS_H #include #endif int main() { int i=INT_MAX; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_FLOAT_H #include #endif int main() { double d=DBL_MAX; if (d); ; return 0; } ================================================================================ TEST configureMissingUtypeTypedefs from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:67) TESTING: configureMissingUtypeTypedefs from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:67) Checks if u_short is undefined Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c:6:9: warning: unused variable 'foo' [-Wunused-variable] u_short foo; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { u_short foo; ; return 0; } ================================================================================ TEST configureMissingFunctions from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:73) TESTING: configureMissingFunctions from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:73) Checks for SOCKETS ================================================================================ TEST configureMissingSignals from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:93) TESTING: configureMissingSignals from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:93) Check for missing signals, and define MISSING_ if necessary Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGABRT; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGALRM; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGBUS; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCHLD; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGCONT; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGFPE; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGHUP; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGILL; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGINT; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGKILL; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGPIPE; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGQUIT; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSEGV; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSTOP; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGSYS; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTERM; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTRAP; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGTSTP; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGURG; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR1; if (i); ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int i=SIGUSR2; if (i); ; return 0; } ================================================================================ TEST configureMissingGetdomainnamePrototype from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:110) TESTING: configureMissingGetdomainnamePrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:110) Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c:21:42: warning: initialization from incompatible pointer type [-Wincompatible-pointer-types] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.cc Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.cc: In function 'int main()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.cc:21:42: error: invalid conversion from 'int (*)(char*, int)' to 'int (*)(char*, size_t) {aka int (*)(char*, long unsigned int)}' [-fpermissive] int (*getdomainname_ptr)(char*,size_t) = getdomainname; ^ Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,size_t) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Compile failed inside link Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_UNISTD_H #include #endif #ifdef PETSC_HAVE_NETDB_H #include #endif int main() { int (*getdomainname_ptr)(char*,int) = getdomainname; char test[10]; if (getdomainname_ptr(test,10)) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language Cxx ================================================================================ TEST configureMissingSrandPrototype from config.utilities.missing(/Users/justin/Software/petsc/config/BuildSystem/config/utilities/missing.py:135) TESTING: configureMissingSrandPrototype from config.utilities.missing(config/BuildSystem/config/utilities/missing.py:135) Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #if !defined(_BSD_SOURCE) #define _BSD_SOURCE #endif #if !defined(_DEFAULT_SOURCE) #define _DEFAULT_SOURCE #endif #ifdef PETSC_HAVE_STDLIB_H #include #endif int main() { double (*drand48_ptr)(void) = drand48; void (*srand48_ptr)(long int) = srand48; long int seed=10; srand48_ptr(seed); if (drand48_ptr() > 0.5) return 1; ; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language Cxx ================================================================================ TEST configureMkdir from config.programs(/Users/justin/Software/petsc/config/BuildSystem/config/programs.py:22) TESTING: configureMkdir from config.programs(config/BuildSystem/config/programs.py:22) Make sure we can have mkdir automatically make intermediate directories Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/local/bin/mkdir...not found Checking for program /usr/bin/mkdir...not found Checking for program /bin/mkdir...found Executing: /bin/mkdir -p .conftest/tmp Adding -p flag to /bin/mkdir -p to automatically create directories Defined make macro "MKDIR" to "/bin/mkdir -p" ================================================================================ TEST configureAutoreconf from config.programs(/Users/justin/Software/petsc/config/BuildSystem/config/programs.py:44) TESTING: configureAutoreconf from config.programs(config/BuildSystem/config/programs.py:44) Check for autoreconf Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/local/bin/autoreconf...not found Checking for program /usr/bin/autoreconf...not found Checking for program /bin/autoreconf...not found Checking for program /usr/sbin/autoreconf...not found Checking for program /sbin/autoreconf...not found Checking for program /opt/X11/bin/autoreconf...not found Checking for program /usr/texbin/autoreconf...not found Checking for program /Users/justin/autoreconf...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/autoreconf...not found ================================================================================ TEST configurePrograms from config.programs(/Users/justin/Software/petsc/config/BuildSystem/config/programs.py:66) TESTING: configurePrograms from config.programs(config/BuildSystem/config/programs.py:66) Check for the programs needed to build and run PETSc Checking for program /usr/local/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/local/bin/sh...not found Checking for program /usr/bin/sh...not found Checking for program /bin/sh...found Defined make macro "SHELL" to "/bin/sh" Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/local/bin/sed...not found Checking for program /usr/bin/sed...found Defined make macro "SED" to "/usr/bin/sed" All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.programs Executing: /usr/bin/sed -i s/sed/sd/g "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.programs/sed1" Rejected SEDINPLACE cmd: /usr/bin/sed -i Executing: /usr/bin/sed -i "" s/sed/sd/g "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.programs/sed1" Adding SEDINPLACE cmd: /usr/bin/sed -i "" Defined make macro "SEDINPLACE" to "/usr/bin/sed -i """ Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/local/bin/mv...not found Checking for program /usr/bin/mv...not found Checking for program /bin/mv...found Defined make macro "MV" to "/bin/mv" Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/local/bin/cp...not found Checking for program /usr/bin/cp...not found Checking for program /bin/cp...found Defined make macro "CP" to "/bin/cp" Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/local/bin/grep...not found Checking for program /usr/bin/grep...found Defined make macro "GREP" to "/usr/bin/grep" Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/local/bin/rm...not found Checking for program /usr/bin/rm...not found Checking for program /bin/rm...found Defined make macro "RM" to "/bin/rm -f" Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/local/bin/diff...not found Checking for program /usr/bin/diff...found Executing: "/usr/bin/diff" -w "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.programs/diff1" "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.programs/diff2" Defined make macro "DIFF" to "/usr/bin/diff -w" Checking for program /usr/ucb/ps...not found Checking for program /usr/usb/ps...not found Checking for program /Users/justin/ps...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/ps...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/local/bin/gzip...not found Checking for program /usr/bin/gzip...found Defined make macro "GZIP" to "/usr/bin/gzip" Defined "HAVE_GZIP" to "1" Defined make macro "PYTHON" to "/usr/bin/python" ================================================================================ TEST configureMake from config.packages.make(/Users/justin/Software/petsc/config/BuildSystem/config/packages/make.py:66) TESTING: configureMake from config.packages.make(config/BuildSystem/config/packages/make.py:66) Check for user specified make - or gmake, make Checking for program /usr/local/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/local/bin/gmake...not found Checking for program /usr/bin/gmake...not found Checking for program /bin/gmake...not found Checking for program /usr/sbin/gmake...not found Checking for program /sbin/gmake...not found Checking for program /opt/X11/bin/gmake...not found Checking for program /usr/texbin/gmake...not found Checking for program /Users/justin/gmake...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/gmake...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/local/bin/make...not found Checking for program /usr/bin/make...found Defined make macro "MAKE" to "/usr/bin/make" ================================================================================ TEST configureCheckGNUMake from config.packages.make(/Users/justin/Software/petsc/config/BuildSystem/config/packages/make.py:84) TESTING: configureCheckGNUMake from config.packages.make(config/BuildSystem/config/packages/make.py:84) Check for GNU make Executing: /usr/bin/make --version stdout: GNU Make 3.81 Copyright (C) 2006 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. This program built for i386-apple-darwin11.3.0 Defined make macro "MAKE_IS_GNUMAKE" to "1" Defined make rule "libc" with dependencies "${LIBNAME}(${OBJSC})" and code [] Defined make rule "libcxx" with dependencies "${LIBNAME}(${OBJSCXX})" and code [] Defined make rule "libcu" with dependencies "${LIBNAME}(${OBJSCU})" and code [] Defined make rule "libf" with dependencies "${OBJSF}" and code -${AR} ${AR_FLAGS} ${LIBNAME} ${OBJSF} ================================================================================ TEST configureMakeNP from config.packages.make(/Users/justin/Software/petsc/config/BuildSystem/config/packages/make.py:121) TESTING: configureMakeNP from config.packages.make(config/BuildSystem/config/packages/make.py:121) check no of cores on the build machine [perhaps to do make '-j ncores'] module multiprocessing found 4 cores: using make_np = 4 Defined make macro "MAKE_NP" to "4" Defined make macro "OMAKE_PRINTDIR " to "/usr/bin/make --print-directory" Defined make macro "OMAKE" to "/usr/bin/make --no-print-directory" Defined make macro "MAKE_PAR_OUT_FLG" to "" ================================================================================ TEST alternateConfigureLibrary from config.packages.OpenMPI(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.OpenMPI(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.MPICH(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.MPICH(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:480) TESTING: configureLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:480) Calls the regular package configureLibrary and then does an additional test needed by MPI ================================================================================== Checking for a functional MPI Checking for library in User specified root directory MPI: [] Contents: ['AUTHORS', 'bin', 'etc', 'include', 'INSTALL_RECEIPT.json', 'lib', 'libexec', 'LICENSE', 'NEWS', 'README', 'share'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [MPI_Init MPI_Comm_create] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Init(); static void _check_MPI_Init() { MPI_Init(); } char MPI_Comm_create(); static void _check_MPI_Comm_create() { MPI_Comm_create(); } int main() { _check_MPI_Init(); _check_MPI_Comm_create();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Checking for headers User specified root directory MPI: ['/usr/local/opt/open-mpi/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['mpi.h'] in ['/usr/local/opt/open-mpi/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/opt/open-mpi/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/local/opt/open-mpi/include/mpi.h" 1 # 223 "/usr/local/opt/open-mpi/include/mpi.h" # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 1 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 216 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef int wchar_t; # 426 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef struct { long long __max_align_ll __attribute__((__aligned__(__alignof__(long long)))); long double __max_align_ld __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 224 "/usr/local/opt/open-mpi/include/mpi.h" 2 # 256 "/usr/local/opt/open-mpi/include/mpi.h" # 1 "/usr/local/opt/open-mpi/include/mpi_portable_platform.h" 1 # 257 "/usr/local/opt/open-mpi/include/mpi.h" 2 # 321 "/usr/local/opt/open-mpi/include/mpi.h" # 321 "/usr/local/opt/open-mpi/include/mpi.h" typedef ptrdiff_t MPI_Aint; typedef long long MPI_Offset; typedef long long MPI_Count; typedef struct ompi_communicator_t *MPI_Comm; typedef struct ompi_datatype_t *MPI_Datatype; typedef struct ompi_errhandler_t *MPI_Errhandler; typedef struct ompi_file_t *MPI_File; typedef struct ompi_group_t *MPI_Group; typedef struct ompi_info_t *MPI_Info; typedef struct ompi_op_t *MPI_Op; typedef struct ompi_request_t *MPI_Request; typedef struct ompi_message_t *MPI_Message; typedef struct ompi_status_public_t MPI_Status; typedef struct ompi_win_t *MPI_Win; typedef struct mca_base_var_enum_t *MPI_T_enum; typedef struct ompi_mpit_cvar_handle_t *MPI_T_cvar_handle; typedef struct mca_base_pvar_handle_t *MPI_T_pvar_handle; typedef struct mca_base_pvar_session_t *MPI_T_pvar_session; struct ompi_status_public_t { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; int _cancelled; size_t _ucount; }; typedef struct ompi_status_public_t ompi_status_public_t; # 368 "/usr/local/opt/open-mpi/include/mpi.h" typedef int (MPI_Copy_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Delete_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype, MPI_Aint *, void *); typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn __attribute__((__deprecated__("MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead"))); typedef void (ompi_file_errhandler_fn)(MPI_File *, int *, ...); typedef ompi_file_errhandler_fn MPI_File_errhandler_fn __attribute__((__deprecated__("MPI_File_errhandler_fn was deprecated in MPI-2.2; use MPI_File_errhandler_function instead"))); typedef ompi_file_errhandler_fn MPI_File_errhandler_function; typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn __attribute__((__deprecated__("MPI_Win_errhandler_fn was deprecated in MPI-2.2; use MPI_Win_errhandler_function instead"))); typedef void (MPI_Handler_function)(MPI_Comm *, int *, ...); typedef void (MPI_User_function)(void *, void *, int *, MPI_Datatype *); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_cancel_function)(void *, int); # 504 "/usr/local/opt/open-mpi/include/mpi.h" enum { MPI_TAG_UB, MPI_HOST, MPI_IO, MPI_WTIME_IS_GLOBAL, MPI_APPNUM, MPI_LASTUSEDCODE, MPI_UNIVERSE_SIZE, MPI_WIN_BASE, MPI_WIN_SIZE, MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, MPI_WIN_MODEL, IMPI_CLIENT_SIZE, IMPI_CLIENT_COLOR, IMPI_HOST_SIZE, IMPI_HOST_COLOR }; # 619 "/usr/local/opt/open-mpi/include/mpi.h" enum { MPI_IDENT, MPI_CONGRUENT, MPI_SIMILAR, MPI_UNEQUAL }; enum { MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED, MPI_THREAD_MULTIPLE }; enum { MPI_COMBINER_NAMED, MPI_COMBINER_DUP, MPI_COMBINER_CONTIGUOUS, MPI_COMBINER_VECTOR, MPI_COMBINER_HVECTOR_INTEGER, MPI_COMBINER_HVECTOR, MPI_COMBINER_INDEXED, MPI_COMBINER_HINDEXED_INTEGER, MPI_COMBINER_HINDEXED, MPI_COMBINER_INDEXED_BLOCK, MPI_COMBINER_STRUCT_INTEGER, MPI_COMBINER_STRUCT, MPI_COMBINER_SUBARRAY, MPI_COMBINER_DARRAY, MPI_COMBINER_F90_REAL, MPI_COMBINER_F90_COMPLEX, MPI_COMBINER_F90_INTEGER, MPI_COMBINER_RESIZED, MPI_COMBINER_HINDEXED_BLOCK }; enum { MPI_COMM_TYPE_SHARED }; enum { MPI_T_VERBOSITY_USER_BASIC, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum { MPI_T_SCOPE_CONSTANT, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum { MPI_T_BIND_NO_OBJECT, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum { MPI_T_PVAR_CLASS_STATE, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 808 "/usr/local/opt/open-mpi/include/mpi.h" __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_DELETE_FN( MPI_Datatype datatype, int type_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_COPY_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_DUP_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ) __attribute__((__deprecated__("MPI_NULL_DELETE_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) __attribute__((__deprecated__("MPI_NULL_COPY_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) __attribute__((__deprecated__("MPI_DUP_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_DELETE_FN( MPI_Win window, int win_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_COPY_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_DUP_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); # 878 "/usr/local/opt/open-mpi/include/mpi.h" __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_world; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_self; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_null; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_empty; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_null; __attribute__((visibility("default"))) extern struct ompi_predefined_request_t ompi_request_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_no_proc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_null; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_min; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_max; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_sum; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_prod; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_land; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_band; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_maxloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_minloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_replace; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_no_op; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_datatype_null; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_lb __attribute__((__deprecated__("MPI_LB is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ub __attribute__((__deprecated__("MPI_UB is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_signed_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_byte; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_wchar; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_packed; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_character; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_longdbl_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex32; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_aint; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_offset; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_count; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_float_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_long_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errhandler_null; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_are_fatal; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_return; __attribute__((visibility("default"))) extern struct ompi_predefined_win_t ompi_mpi_win_null; __attribute__((visibility("default"))) extern struct ompi_predefined_file_t ompi_mpi_file_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_env; __attribute__((visibility("default"))) extern int *MPI_F_STATUS_IGNORE; __attribute__((visibility("default"))) extern int *MPI_F_STATUSES_IGNORE; # 1171 "/usr/local/opt/open-mpi/include/mpi.h" __attribute__((visibility("default"))) int MPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int MPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int MPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int MPI_Address(void *location, MPI_Aint *address) __attribute__((__deprecated__("MPI_Address is superseded by MPI_Get_address in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Attr_delete(MPI_Comm comm, int keyval) __attribute__((__deprecated__("MPI_Attr_delete is superseded by MPI_Comm_delete_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) __attribute__((__deprecated__("MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) __attribute__((__deprecated__("MPI_Attr_put is superseded by MPI_Comm_set_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int MPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int MPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int MPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int MPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int MPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm MPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int MPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int MPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int MPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int MPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int MPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int MPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_create is superseded by MPI_Comm_create_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) MPI_Errhandler MPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_get is superseded by MPI_Comm_get_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) __attribute__((__deprecated__("MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int MPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File MPI_File_f2c(int file); __attribute__((visibility("default"))) int MPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int MPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int MPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int MPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int MPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int MPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int MPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int MPI_Finalize(void); __attribute__((visibility("default"))) int MPI_Finalized(int *flag); __attribute__((visibility("default"))) int MPI_Free_mem(void *base); __attribute__((visibility("default"))) int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int MPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int MPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group MPI_Group_f2c(int group); __attribute__((visibility("default"))) int MPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int MPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int MPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info MPI_Info_f2c(int info); __attribute__((visibility("default"))) int MPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int MPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int MPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int MPI_Initialized(int *flag); __attribute__((visibility("default"))) int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) __attribute__((__deprecated__("MPI_Keyval_create is superseded by MPI_Comm_create_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Keyval_free(int *keyval) __attribute__((__deprecated__("MPI_Keyval_free is superseded by MPI_Comm_free_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int MPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message MPI_Message_f2c(int message); __attribute__((visibility("default"))) int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int MPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int MPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int MPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op MPI_Op_f2c(int op); __attribute__((visibility("default"))) int MPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Query_thread(int *provided); __attribute__((visibility("default"))) int MPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); __attribute__((visibility("default"))) int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int MPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request MPI_Request_f2c(int request); __attribute__((visibility("default"))) int MPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int MPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int MPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int MPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int MPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int MPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) __attribute__((__deprecated__("MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype MPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int MPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int MPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int MPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int MPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int MPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hindexed is superseded by MPI_Type_create_hindexed in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hvector is superseded by MPI_Type_create_hvector in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) __attribute__((__deprecated__("MPI_Type_lb is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int MPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int MPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int MPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int MPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) __attribute__((__deprecated__("MPI_Type_ub is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status *array_of_statuses); __attribute__((visibility("default"))) int MPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int MPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int MPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int MPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win MPI_Win_f2c(int win); __attribute__((visibility("default"))) int MPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int MPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int MPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double MPI_Wtick(void); __attribute__((visibility("default"))) double MPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int PMPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int PMPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int PMPI_Address(void *location, MPI_Aint *address) __attribute__((__deprecated__("MPI_Address is superseded by MPI_Get_address in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Attr_delete(MPI_Comm comm, int keyval) __attribute__((__deprecated__("MPI_Attr_delete is superseded by MPI_Comm_delete_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) __attribute__((__deprecated__("MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) __attribute__((__deprecated__("MPI_Attr_put is superseded by MPI_Comm_set_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int PMPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int PMPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int PMPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm PMPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int PMPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int PMPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int PMPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int PMPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int PMPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_create is superseded by MPI_Comm_create_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) MPI_Errhandler PMPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_get is superseded by MPI_Comm_get_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) __attribute__((__deprecated__("MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int PMPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File PMPI_File_f2c(int file); __attribute__((visibility("default"))) int PMPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int PMPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int PMPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int PMPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int PMPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int PMPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int PMPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int PMPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int PMPI_Finalize(void); __attribute__((visibility("default"))) int PMPI_Finalized(int *flag); __attribute__((visibility("default"))) int PMPI_Free_mem(void *base); __attribute__((visibility("default"))) int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int PMPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group PMPI_Group_f2c(int group); __attribute__((visibility("default"))) int PMPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int PMPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int PMPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info PMPI_Info_f2c(int info); __attribute__((visibility("default"))) int PMPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int PMPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int PMPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int PMPI_Initialized(int *flag); __attribute__((visibility("default"))) int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) __attribute__((__deprecated__("MPI_Keyval_create is superseded by MPI_Comm_create_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Keyval_free(int *keyval) __attribute__((__deprecated__("MPI_Keyval_free is superseded by MPI_Comm_free_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int PMPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message PMPI_Message_f2c(int message); __attribute__((visibility("default"))) int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int PMPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int PMPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op PMPI_Op_f2c(int op); __attribute__((visibility("default"))) int PMPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Query_thread(int *provided); __attribute__((visibility("default"))) int PMPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op); __attribute__((visibility("default"))) int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int PMPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request PMPI_Request_f2c(int request); __attribute__((visibility("default"))) int PMPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int PMPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int PMPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int PMPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int PMPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int PMPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) __attribute__((__deprecated__("MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype PMPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int PMPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int PMPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int PMPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int PMPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int PMPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hindexed is superseded by MPI_Type_create_hindexed in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hvector is superseded by MPI_Type_create_hvector in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) __attribute__((__deprecated__("MPI_Type_lb is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int PMPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int PMPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int PMPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int PMPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) __attribute__((__deprecated__("MPI_Type_ub is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int PMPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int PMPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int PMPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win PMPI_Win_f2c(int win); __attribute__((visibility("default"))) int PMPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int PMPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double PMPI_Wtick(void); __attribute__((visibility("default"))) double PMPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int PMPI_T_finalize (void); __attribute__((visibility("default"))) int PMPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int PMPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int PMPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int PMPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int PMPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int PMPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int PMPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int MPI_T_finalize (void); __attribute__((visibility("default"))) int MPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int MPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int MPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int MPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int MPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int MPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int MPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int MPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['mpi.h'] in ['/usr/local/opt/open-mpi/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Popping language C ================================================================================ TEST configureConversion from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:214) TESTING: configureConversion from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:214) Check for the functions which convert communicators between C and Fortran - Define HAVE_MPI_COMM_F2C and HAVE_MPI_COMM_C2F if they are present - Some older MPI 1 implementations are missing these All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_f2c((MPI_Fint)0)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPI_COMM_F2C" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_c2f(MPI_COMM_WORLD)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPI_COMM_C2F" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:10: warning: unused variable 'a' [-Wunused-variable] MPI_Fint a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Fint a; ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPI_FINT" to "1" ================================================================================ TEST configureMPI2 from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:180) TESTING: configureMPI2 from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:180) Check for functions added to the interface in MPI-2 Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { int flag;if (MPI_Finalized(&flag)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPI_FINALIZED" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Allreduce(MPI_IN_PLACE,0, 1, MPI_INT, MPI_SUM, MPI_COMM_SELF)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPI_IN_PLACE" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:94: warning: initialization makes pointer from integer without a cast [-Wint-conversion] int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:94: note: (near initialization for 'old_types[1]') Source: #include "confdefs.h" #include "conffix.h" #include int main() { int count=2; int blocklens[2]={0,1}; MPI_Aint indices[2]={0,1}; MPI_Datatype old_types[2]={0,1}; MPI_Datatype *newtype = 0; if (MPI_Type_create_struct(count, blocklens, indices, old_types, newtype)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:1: warning: 'MPI_Comm_errhandler_fn' is deprecated: MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead [-Wdeprecated-declarations] MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Comm_errhandler_fn * p_err_fun = 0; MPI_Errhandler * p_errhandler = 0; if (MPI_Comm_create_errhandler(p_err_fun,p_errhandler)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { if (MPI_Comm_set_errhandler(MPI_COMM_WORLD,MPI_ERRORS_RETURN)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl ================================================================================ TEST configureTypes from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:234) TESTING: configureTypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:234) Checking for MPI types Checking for size of type: MPI_Comm Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Comm)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_MPI_COMM" to "8" Checking for size of type: MPI_Fint Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #if STDC_HEADERS #include #include #include #endif #define MPICH_IGNORE_CXX_SEEK #define MPICH_SKIP_MPICXX 1 #define OMPI_SKIP_MPICXX 1 #include int main() { FILE *f = fopen("conftestval", "w"); if (!f) exit(1); fprintf(f, "%lu\n", (unsigned long)sizeof(MPI_Fint)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types/conftest Popping language C Defined "SIZEOF_MPI_FINT" to "4" ================================================================================ TEST configureMPITypes from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:246) TESTING: configureMPITypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:246) Checking for MPI Datatype handles Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_LONG_DOUBLE, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Defined "HAVE_MPI_LONG_DOUBLE" to "1" Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_INT64_T, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_INT64_T, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_INT64_T, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Defined "HAVE_MPI_INT64_T" to "1" Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:12:1: warning: 'MPI_Type_extent' is deprecated: MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0 [-Wdeprecated-declarations] ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); ^ In file included from /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:0: /usr/local/opt/open-mpi/include/mpi.h:1744:20: note: declared here OMPI_DECLSPEC int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) ^ Source: #include "confdefs.h" #include "conffix.h" #ifdef PETSC_HAVE_STDLIB_H #include #endif #include int main() { MPI_Aint size; int ierr; MPI_Init(0,0); ierr = MPI_Type_extent(MPI_C_DOUBLE_COMPLEX, &size); if(ierr || (size == 0)) exit(1); MPI_Finalize(); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest to see if it can be run Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Executing: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest Defined "HAVE_MPI_C_DOUBLE_COMPLEX" to "1" Popping language C ================================================================================ TEST configureMissingPrototypes from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:322) TESTING: configureMissingPrototypes from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:322) Checks for missing prototypes, which it adds to petscfix.h ================================================================================ TEST SGIMPICheck from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:341) TESTING: SGIMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:341) Returns true if SGI MPI is used Checking for functions [MPI_SGI_barrier] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_SGI_barrier(); static void _check_MPI_SGI_barrier() { MPI_SGI_barrier(); } int main() { _check_MPI_SGI_barrier();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_MPI_SGI_barrier", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C SGI MPI test failure ================================================================================ TEST CxxMPICheck from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:351) TESTING: CxxMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:351) Make sure C++ can compile and link Pushing language Cxx Checking for header mpi.h Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.cc Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { ; return 0; } Checking for C++ MPI_Finalize() Checking for functions [MPI_Finalize] in library [] [] Pushing language Cxx Executing: /usr/local/opt/open-mpi/bin/mpicxx -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.cc Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.cc: In function 'void _check_MPI_Finalize()': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.cc:5:41: warning: variable 'ierr' set but not used [-Wunused-but-set-variable] static void _check_MPI_Finalize() { int ierr; ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ #include static void _check_MPI_Finalize() { int ierr; ierr = MPI_Finalize();; } int main() { _check_MPI_Finalize();; return 0; } Pushing language CXX Popping language CXX Executing: /usr/local/opt/open-mpi/bin/mpicxx -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language Cxx Popping language Cxx ================================================================================ TEST FortranMPICheck from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:369) TESTING: FortranMPICheck from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:369) Make sure fortran include [mpif.h] and library symbols are found Pushing language FC Checking for header mpif.h Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" end Checking for fortran mpi_init() Checking for functions [] in library [] [] Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.F Successful compile: Source: program main #include "mpif.h" integer ierr call mpi_init(ierr) end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language FC Checking for mpi.mod Checking for functions [] in library [] [] Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.F Successful compile: Source: program main use mpi integer ierr,rank call mpi_init(ierr) call mpi_comm_rank(MPI_COMM_WORLD,rank,ierr) end Pushing language FC Popping language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wno-unused-variable -ffree-line-length-0 -Wno-unused-dummy-argument -O /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language FC Defined "HAVE_MPI_F90MODULE" to "1" Popping language FC ================================================================================ TEST configureIO from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:394) TESTING: configureIO from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:394) Check for the functions in MPI/IO - Define HAVE_MPIIO if they are present - Some older MPI 1 implementations are missing these Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_Aint lb, extent; if (MPI_Type_get_extent(MPI_INT, &lb, &extent)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'fh' is used uninitialized in this function [-Wuninitialized] if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'buf' is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_write_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'fh' is used uninitialized in this function [-Wuninitialized] if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'buf' is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; void *buf; MPI_Status status; if (MPI_File_read_all(fh, buf, 1, MPI_INT, &status)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'fh' is used uninitialized in this function [-Wuninitialized] if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'disp' is used uninitialized in this function [-Wuninitialized] /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:9:5: warning: 'info' is used uninitialized in this function [-Wuninitialized] Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Offset disp; MPI_Info info; if (MPI_File_set_view(fh, disp, MPI_INT, MPI_INT, "", info)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:8:5: warning: 'info' is used uninitialized in this function [-Wuninitialized] if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_open(MPI_COMM_SELF, "", 0, info, &fh)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:7:10: warning: unused variable 'info' [-Wunused-variable] MPI_Info info; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { MPI_File fh; MPI_Info info; if (MPI_File_close(&fh)); ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_MPIIO" to "1" ================================================================================ TEST findMPIInc from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:456) TESTING: findMPIInc from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:456) Find MPI include paths from "mpicc -show" Executing: /usr/local/opt/open-mpi/bin/mpicc -show stdout: gcc-5 -I/usr/local/Cellar/open-mpi/1.8.6/include -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -lmpi compilers: Checking arg gcc-5 compilers: Checking arg -I/usr/local/Cellar/open-mpi/1.8.6/include compilers: Found include directory: /usr/local/Cellar/open-mpi/1.8.6/include compilers: Checking arg -L/usr/local/opt/libevent/lib compilers: Checking arg -L/usr/local/Cellar/open-mpi/1.8.6/lib compilers: Checking arg -lmpi ================================================================================ TEST checkMPICHorOpenMPI from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:431) TESTING: checkMPICHorOpenMPI from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:431) Determine if MPICH_NUMVERSION or OMPI_MAJOR_VERSION exist in mpi.h Used for consistency checking of MPI installation at compile time Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:4:17: error: 'MPICH_NUMVERSION' undeclared here (not in a function) int mpich_ver = MPICH_NUMVERSION; ^ Source: #include "confdefs.h" #include "conffix.h" #include int mpich_ver = MPICH_NUMVERSION; int main() { ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; int main() { ; return 0; } Source: #include "confdefs.h" #include "conffix.h" #include int ompi_major = OMPI_MAJOR_VERSION; int ompi_minor = OMPI_MINOR_VERSION; int ompi_release = OMPI_RELEASE_VERSION; Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c" 2 # 1 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" 1 # 223 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 1 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 216 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long unsigned int size_t; # 328 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef int wchar_t; # 426 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef struct { long long __max_align_ll __attribute__((__aligned__(__alignof__(long long)))); long double __max_align_ld __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 224 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" 2 # 256 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" # 1 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi_portable_platform.h" 1 # 257 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" 2 # 321 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" # 321 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" typedef ptrdiff_t MPI_Aint; typedef long long MPI_Offset; typedef long long MPI_Count; typedef struct ompi_communicator_t *MPI_Comm; typedef struct ompi_datatype_t *MPI_Datatype; typedef struct ompi_errhandler_t *MPI_Errhandler; typedef struct ompi_file_t *MPI_File; typedef struct ompi_group_t *MPI_Group; typedef struct ompi_info_t *MPI_Info; typedef struct ompi_op_t *MPI_Op; typedef struct ompi_request_t *MPI_Request; typedef struct ompi_message_t *MPI_Message; typedef struct ompi_status_public_t MPI_Status; typedef struct ompi_win_t *MPI_Win; typedef struct mca_base_var_enum_t *MPI_T_enum; typedef struct ompi_mpit_cvar_handle_t *MPI_T_cvar_handle; typedef struct mca_base_pvar_handle_t *MPI_T_pvar_handle; typedef struct mca_base_pvar_session_t *MPI_T_pvar_session; struct ompi_status_public_t { int MPI_SOURCE; int MPI_TAG; int MPI_ERROR; int _cancelled; size_t _ucount; }; typedef struct ompi_status_public_t ompi_status_public_t; # 368 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" typedef int (MPI_Copy_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Delete_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Datarep_extent_function)(MPI_Datatype, MPI_Aint *, void *); typedef int (MPI_Datarep_conversion_function)(void *, MPI_Datatype, int, void *, MPI_Offset, void *); typedef void (MPI_Comm_errhandler_function)(MPI_Comm *, int *, ...); typedef MPI_Comm_errhandler_function MPI_Comm_errhandler_fn __attribute__((__deprecated__("MPI_Comm_errhandler_fn was deprecated in MPI-2.2; use MPI_Comm_errhandler_function instead"))); typedef void (ompi_file_errhandler_fn)(MPI_File *, int *, ...); typedef ompi_file_errhandler_fn MPI_File_errhandler_fn __attribute__((__deprecated__("MPI_File_errhandler_fn was deprecated in MPI-2.2; use MPI_File_errhandler_function instead"))); typedef ompi_file_errhandler_fn MPI_File_errhandler_function; typedef void (MPI_Win_errhandler_function)(MPI_Win *, int *, ...); typedef MPI_Win_errhandler_function MPI_Win_errhandler_fn __attribute__((__deprecated__("MPI_Win_errhandler_fn was deprecated in MPI-2.2; use MPI_Win_errhandler_function instead"))); typedef void (MPI_Handler_function)(MPI_Comm *, int *, ...); typedef void (MPI_User_function)(void *, void *, int *, MPI_Datatype *); typedef int (MPI_Comm_copy_attr_function)(MPI_Comm, int, void *, void *, void *, int *); typedef int (MPI_Comm_delete_attr_function)(MPI_Comm, int, void *, void *); typedef int (MPI_Type_copy_attr_function)(MPI_Datatype, int, void *, void *, void *, int *); typedef int (MPI_Type_delete_attr_function)(MPI_Datatype, int, void *, void *); typedef int (MPI_Win_copy_attr_function)(MPI_Win, int, void *, void *, void *, int *); typedef int (MPI_Win_delete_attr_function)(MPI_Win, int, void *, void *); typedef int (MPI_Grequest_query_function)(void *, MPI_Status *); typedef int (MPI_Grequest_free_function)(void *); typedef int (MPI_Grequest_cancel_function)(void *, int); # 504 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" enum { MPI_TAG_UB, MPI_HOST, MPI_IO, MPI_WTIME_IS_GLOBAL, MPI_APPNUM, MPI_LASTUSEDCODE, MPI_UNIVERSE_SIZE, MPI_WIN_BASE, MPI_WIN_SIZE, MPI_WIN_DISP_UNIT, MPI_WIN_CREATE_FLAVOR, MPI_WIN_MODEL, IMPI_CLIENT_SIZE, IMPI_CLIENT_COLOR, IMPI_HOST_SIZE, IMPI_HOST_COLOR }; # 619 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" enum { MPI_IDENT, MPI_CONGRUENT, MPI_SIMILAR, MPI_UNEQUAL }; enum { MPI_THREAD_SINGLE, MPI_THREAD_FUNNELED, MPI_THREAD_SERIALIZED, MPI_THREAD_MULTIPLE }; enum { MPI_COMBINER_NAMED, MPI_COMBINER_DUP, MPI_COMBINER_CONTIGUOUS, MPI_COMBINER_VECTOR, MPI_COMBINER_HVECTOR_INTEGER, MPI_COMBINER_HVECTOR, MPI_COMBINER_INDEXED, MPI_COMBINER_HINDEXED_INTEGER, MPI_COMBINER_HINDEXED, MPI_COMBINER_INDEXED_BLOCK, MPI_COMBINER_STRUCT_INTEGER, MPI_COMBINER_STRUCT, MPI_COMBINER_SUBARRAY, MPI_COMBINER_DARRAY, MPI_COMBINER_F90_REAL, MPI_COMBINER_F90_COMPLEX, MPI_COMBINER_F90_INTEGER, MPI_COMBINER_RESIZED, MPI_COMBINER_HINDEXED_BLOCK }; enum { MPI_COMM_TYPE_SHARED }; enum { MPI_T_VERBOSITY_USER_BASIC, MPI_T_VERBOSITY_USER_DETAIL, MPI_T_VERBOSITY_USER_ALL, MPI_T_VERBOSITY_TUNER_BASIC, MPI_T_VERBOSITY_TUNER_DETAIL, MPI_T_VERBOSITY_TUNER_ALL, MPI_T_VERBOSITY_MPIDEV_BASIC, MPI_T_VERBOSITY_MPIDEV_DETAIL, MPI_T_VERBOSITY_MPIDEV_ALL }; enum { MPI_T_SCOPE_CONSTANT, MPI_T_SCOPE_READONLY, MPI_T_SCOPE_LOCAL, MPI_T_SCOPE_GROUP, MPI_T_SCOPE_GROUP_EQ, MPI_T_SCOPE_ALL, MPI_T_SCOPE_ALL_EQ }; enum { MPI_T_BIND_NO_OBJECT, MPI_T_BIND_MPI_COMM, MPI_T_BIND_MPI_DATATYPE, MPI_T_BIND_MPI_ERRHANDLER, MPI_T_BIND_MPI_FILE, MPI_T_BIND_MPI_GROUP, MPI_T_BIND_MPI_OP, MPI_T_BIND_MPI_REQUEST, MPI_T_BIND_MPI_WIN, MPI_T_BIND_MPI_MESSAGE, MPI_T_BIND_MPI_INFO }; enum { MPI_T_PVAR_CLASS_STATE, MPI_T_PVAR_CLASS_LEVEL, MPI_T_PVAR_CLASS_SIZE, MPI_T_PVAR_CLASS_PERCENTAGE, MPI_T_PVAR_CLASS_HIGHWATERMARK, MPI_T_PVAR_CLASS_LOWWATERMARK, MPI_T_PVAR_CLASS_COUNTER, MPI_T_PVAR_CLASS_AGGREGATE, MPI_T_PVAR_CLASS_TIMER, MPI_T_PVAR_CLASS_GENERIC }; # 808 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_DELETE_FN( MPI_Datatype datatype, int type_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_NULL_COPY_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_TYPE_DUP_FN( MPI_Datatype datatype, int type_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_COMM_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_DELETE_FN( MPI_Comm comm, int comm_keyval, void* attribute_val_out, void* extra_state ) __attribute__((__deprecated__("MPI_NULL_DELETE_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_NULL_COPY_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) __attribute__((__deprecated__("MPI_NULL_COPY_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_DUP_FN( MPI_Comm comm, int comm_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ) __attribute__((__deprecated__("MPI_DUP_FN is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_DELETE_FN( MPI_Win window, int win_keyval, void* attribute_val_out, void* extra_state ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_NULL_COPY_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); __attribute__((visibility("default"))) int OMPI_C_MPI_WIN_DUP_FN( MPI_Win window, int win_keyval, void* extra_state, void* attribute_val_in, void* attribute_val_out, int* flag ); # 878 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_world; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_self; __attribute__((visibility("default"))) extern struct ompi_predefined_communicator_t ompi_mpi_comm_null; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_empty; __attribute__((visibility("default"))) extern struct ompi_predefined_group_t ompi_mpi_group_null; __attribute__((visibility("default"))) extern struct ompi_predefined_request_t ompi_request_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_null; __attribute__((visibility("default"))) extern struct ompi_predefined_message_t ompi_message_no_proc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_null; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_min; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_max; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_sum; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_prod; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_land; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_band; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_lxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_bxor; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_maxloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_minloc; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_replace; __attribute__((visibility("default"))) extern struct ompi_predefined_op_t ompi_mpi_op_no_op; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_datatype_null; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_lb __attribute__((__deprecated__("MPI_LB is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ub __attribute__((__deprecated__("MPI_UB is deprecated in MPI-2.0"))); __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_signed_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_char; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_byte; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_short; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_unsigned_long_long; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_double; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_wchar; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_packed; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cxx_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_character; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_ldblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2integer; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2real; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblprec; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2cplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_2dblcplex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_float_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_double_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_longdbl_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_short_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_long_int; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_logical8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer1; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_integer16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real2; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real4; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_real16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex8; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex16; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_complex32; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint8_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint16_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint32_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_int64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_uint64_t; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_aint; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_offset; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_count; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_bool; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_float_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_datatype_t ompi_mpi_c_long_double_complex; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errhandler_null; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_are_fatal; __attribute__((visibility("default"))) extern struct ompi_predefined_errhandler_t ompi_mpi_errors_return; __attribute__((visibility("default"))) extern struct ompi_predefined_win_t ompi_mpi_win_null; __attribute__((visibility("default"))) extern struct ompi_predefined_file_t ompi_mpi_file_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_null; __attribute__((visibility("default"))) extern struct ompi_predefined_info_t ompi_mpi_info_env; __attribute__((visibility("default"))) extern int *MPI_F_STATUS_IGNORE; __attribute__((visibility("default"))) extern int *MPI_F_STATUSES_IGNORE; # 1171 "/usr/local/Cellar/open-mpi/1.8.6/include/mpi.h" __attribute__((visibility("default"))) int MPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int MPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int MPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int MPI_Address(void *location, MPI_Aint *address) __attribute__((__deprecated__("MPI_Address is superseded by MPI_Get_address in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int MPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Attr_delete(MPI_Comm comm, int keyval) __attribute__((__deprecated__("MPI_Attr_delete is superseded by MPI_Comm_delete_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) __attribute__((__deprecated__("MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) __attribute__((__deprecated__("MPI_Attr_put is superseded by MPI_Comm_set_attr in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int MPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int MPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int MPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int MPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int MPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int MPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int MPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int MPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int MPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int MPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int MPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int MPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int MPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm MPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int MPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int MPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int MPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int MPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int MPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int MPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int MPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int MPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int MPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int MPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int MPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int MPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int MPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int MPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int MPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int MPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int MPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_create is superseded by MPI_Comm_create_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) MPI_Errhandler MPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_get is superseded by MPI_Comm_get_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) __attribute__((__deprecated__("MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int MPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int MPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File MPI_File_f2c(int file); __attribute__((visibility("default"))) int MPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int MPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int MPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int MPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int MPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int MPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int MPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int MPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int MPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int MPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int MPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int MPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int MPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int MPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int MPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int MPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int MPI_Finalize(void); __attribute__((visibility("default"))) int MPI_Finalized(int *flag); __attribute__((visibility("default"))) int MPI_Free_mem(void *base); __attribute__((visibility("default"))) int MPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int MPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int MPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int MPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int MPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int MPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int MPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int MPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int MPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int MPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int MPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int MPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int MPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int MPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int MPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int MPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group MPI_Group_f2c(int group); __attribute__((visibility("default"))) int MPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int MPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int MPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int MPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int MPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int MPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int MPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int MPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info MPI_Info_f2c(int info); __attribute__((visibility("default"))) int MPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int MPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int MPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int MPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int MPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int MPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int MPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int MPI_Initialized(int *flag); __attribute__((visibility("default"))) int MPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int MPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int MPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int MPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) __attribute__((__deprecated__("MPI_Keyval_create is superseded by MPI_Comm_create_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Keyval_free(int *keyval) __attribute__((__deprecated__("MPI_Keyval_free is superseded by MPI_Comm_free_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int MPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message MPI_Message_f2c(int message); __attribute__((visibility("default"))) int MPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int MPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int MPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int MPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op MPI_Op_f2c(int op); __attribute__((visibility("default"))) int MPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int MPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int MPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int MPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int MPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int MPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int MPI_Query_thread(int *provided); __attribute__((visibility("default"))) int MPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op op); __attribute__((visibility("default"))) int MPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int MPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request MPI_Request_f2c(int request); __attribute__((visibility("default"))) int MPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int MPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int MPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int MPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int MPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int MPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int MPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int MPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int MPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int MPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int MPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int MPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) __attribute__((__deprecated__("MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype MPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int MPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int MPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int MPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int MPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int MPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int MPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int MPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hindexed is superseded by MPI_Type_create_hindexed in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hvector is superseded by MPI_Type_create_hvector in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) __attribute__((__deprecated__("MPI_Type_lb is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int MPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int MPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int MPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int MPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int MPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) __attribute__((__deprecated__("MPI_Type_ub is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int MPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int MPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int MPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int MPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int MPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status *array_of_statuses); __attribute__((visibility("default"))) int MPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int MPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int MPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int MPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int MPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int MPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int MPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win MPI_Win_f2c(int win); __attribute__((visibility("default"))) int MPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int MPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int MPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int MPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int MPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int MPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int MPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int MPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int MPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int MPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int MPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int MPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int MPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int MPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int MPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double MPI_Wtick(void); __attribute__((visibility("default"))) double MPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_Abort(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Add_error_class(int *errorclass); __attribute__((visibility("default"))) int PMPI_Add_error_code(int errorclass, int *errorcode); __attribute__((visibility("default"))) int PMPI_Add_error_string(int errorcode, const char *string); __attribute__((visibility("default"))) int PMPI_Address(void *location, MPI_Aint *address) __attribute__((__deprecated__("MPI_Address is superseded by MPI_Get_address in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alloc_mem(MPI_Aint size, MPI_Info info, void *baseptr); __attribute__((visibility("default"))) int PMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iallreduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Alltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ialltoallw(const void *sendbuf, const int sendcounts[], const int sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const int rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Attr_delete(MPI_Comm comm, int keyval) __attribute__((__deprecated__("MPI_Attr_delete is superseded by MPI_Comm_delete_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Attr_get(MPI_Comm comm, int keyval, void *attribute_val, int *flag) __attribute__((__deprecated__("MPI_Attr_get is superseded by MPI_Comm_get_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Dist_graph_create(MPI_Comm comm_old, int n, const int nodes[], const int degrees[], const int targets[], const int weights[], MPI_Info info, int reorder, MPI_Comm * newcomm); __attribute__((visibility("default"))) int PMPI_Dist_graph_create_adjacent(MPI_Comm comm_old, int indegree, const int sources[], const int sourceweights[], int outdegree, const int destinations[], const int destweights[], MPI_Info info, int reorder, MPI_Comm *comm_dist_graph); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors(MPI_Comm comm, int maxindegree, int sources[], int sourceweights[], int maxoutdegree, int destinations[], int destweights[]); __attribute__((visibility("default"))) int PMPI_Dist_graph_neighbors_count(MPI_Comm comm, int *inneighbors, int *outneighbors, int *weighted); __attribute__((visibility("default"))) int PMPI_Attr_put(MPI_Comm comm, int keyval, void *attribute_val) __attribute__((__deprecated__("MPI_Attr_put is superseded by MPI_Comm_set_attr in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Barrier(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibarrier(MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ibcast(void *buffer, int count, MPI_Datatype datatype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Bsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Bsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Buffer_attach(void *buffer, int size); __attribute__((visibility("default"))) int PMPI_Buffer_detach(void *buffer, int *size); __attribute__((visibility("default"))) int PMPI_Cancel(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Cart_coords(MPI_Comm comm, int rank, int maxdims, int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_create(MPI_Comm old_comm, int ndims, const int dims[], const int periods[], int reorder, MPI_Comm *comm_cart); __attribute__((visibility("default"))) int PMPI_Cart_get(MPI_Comm comm, int maxdims, int dims[], int periods[], int coords[]); __attribute__((visibility("default"))) int PMPI_Cart_map(MPI_Comm comm, int ndims, const int dims[], const int periods[], int *newrank); __attribute__((visibility("default"))) int PMPI_Cart_rank(MPI_Comm comm, const int coords[], int *rank); __attribute__((visibility("default"))) int PMPI_Cart_shift(MPI_Comm comm, int direction, int disp, int *rank_source, int *rank_dest); __attribute__((visibility("default"))) int PMPI_Cart_sub(MPI_Comm comm, const int remain_dims[], MPI_Comm *new_comm); __attribute__((visibility("default"))) int PMPI_Cartdim_get(MPI_Comm comm, int *ndims); __attribute__((visibility("default"))) int PMPI_Close_port(const char *port_name); __attribute__((visibility("default"))) int PMPI_Comm_accept(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_c2f(MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Comm_call_errhandler(MPI_Comm comm, int errorcode); __attribute__((visibility("default"))) int PMPI_Comm_compare(MPI_Comm comm1, MPI_Comm comm2, int *result); __attribute__((visibility("default"))) int PMPI_Comm_connect(const char *port_name, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create_errhandler(MPI_Comm_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Comm_create_keyval(MPI_Comm_copy_attr_function *comm_copy_attr_fn, MPI_Comm_delete_attr_function *comm_delete_attr_fn, int *comm_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Comm_create_group(MPI_Comm comm, MPI_Group group, int tag, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_create(MPI_Comm comm, MPI_Group group, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_delete_attr(MPI_Comm comm, int comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_disconnect(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_dup(MPI_Comm comm, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_idup(MPI_Comm comm, MPI_Comm *newcomm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Comm_dup_with_info(MPI_Comm comm, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) MPI_Comm PMPI_Comm_f2c(int comm); __attribute__((visibility("default"))) int PMPI_Comm_free_keyval(int *comm_keyval); __attribute__((visibility("default"))) int PMPI_Comm_free(MPI_Comm *comm); __attribute__((visibility("default"))) int PMPI_Comm_get_attr(MPI_Comm comm, int comm_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Comm_get_errhandler(MPI_Comm comm, MPI_Errhandler *erhandler); __attribute__((visibility("default"))) int PMPI_Comm_get_info(MPI_Comm comm, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Comm_get_name(MPI_Comm comm, char *comm_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Comm_get_parent(MPI_Comm *parent); __attribute__((visibility("default"))) int PMPI_Comm_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_join(int fd, MPI_Comm *intercomm); __attribute__((visibility("default"))) int PMPI_Comm_rank(MPI_Comm comm, int *rank); __attribute__((visibility("default"))) int PMPI_Comm_remote_group(MPI_Comm comm, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Comm_remote_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_set_attr(MPI_Comm comm, int comm_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Comm_set_errhandler(MPI_Comm comm, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Comm_set_info(MPI_Comm comm, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Comm_set_name(MPI_Comm comm, const char *comm_name); __attribute__((visibility("default"))) int PMPI_Comm_size(MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Comm_spawn(const char *command, char *argv[], int maxprocs, MPI_Info info, int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_spawn_multiple(int count, char *array_of_commands[], char **array_of_argv[], const int array_of_maxprocs[], const MPI_Info array_of_info[], int root, MPI_Comm comm, MPI_Comm *intercomm, int array_of_errcodes[]); __attribute__((visibility("default"))) int PMPI_Comm_split(MPI_Comm comm, int color, int key, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_split_type(MPI_Comm comm, int split_type, int key, MPI_Info info, MPI_Comm *newcomm); __attribute__((visibility("default"))) int PMPI_Comm_test_inter(MPI_Comm comm, int *flag); __attribute__((visibility("default"))) int PMPI_Compare_and_swap(void *origin_addr, void *compare_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Dims_create(int nnodes, int ndims, int dims[]); __attribute__((visibility("default"))) int PMPI_Errhandler_c2f(MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_create(MPI_Handler_function *function, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_create is superseded by MPI_Comm_create_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) MPI_Errhandler PMPI_Errhandler_f2c(int errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_free(MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Errhandler_get(MPI_Comm comm, MPI_Errhandler *errhandler) __attribute__((__deprecated__("MPI_Errhandler_get is superseded by MPI_Comm_get_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Errhandler_set(MPI_Comm comm, MPI_Errhandler errhandler) __attribute__((__deprecated__("MPI_Errhandler_set is superseded by MPI_Comm_set_errhandler in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Error_class(int errorcode, int *errorclass); __attribute__((visibility("default"))) int PMPI_Error_string(int errorcode, char *string, int *resultlen); __attribute__((visibility("default"))) int PMPI_Exscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Fetch_and_op(void *origin_addr, void *result_addr, MPI_Datatype datatype, int target_rank, MPI_Aint target_disp, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Iexscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_c2f(MPI_File file); __attribute__((visibility("default"))) MPI_File PMPI_File_f2c(int file); __attribute__((visibility("default"))) int PMPI_File_call_errhandler(MPI_File fh, int errorcode); __attribute__((visibility("default"))) int PMPI_File_create_errhandler(MPI_File_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_set_errhandler( MPI_File file, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_File_get_errhandler( MPI_File file, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_File_open(MPI_Comm comm, const char *filename, int amode, MPI_Info info, MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_close(MPI_File *fh); __attribute__((visibility("default"))) int PMPI_File_delete(const char *filename, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_set_size(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_preallocate(MPI_File fh, MPI_Offset size); __attribute__((visibility("default"))) int PMPI_File_get_size(MPI_File fh, MPI_Offset *size); __attribute__((visibility("default"))) int PMPI_File_get_group(MPI_File fh, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_File_get_amode(MPI_File fh, int *amode); __attribute__((visibility("default"))) int PMPI_File_set_info(MPI_File fh, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_info(MPI_File fh, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_File_set_view(MPI_File fh, MPI_Offset disp, MPI_Datatype etype, MPI_Datatype filetype, const char *datarep, MPI_Info info); __attribute__((visibility("default"))) int PMPI_File_get_view(MPI_File fh, MPI_Offset *disp, MPI_Datatype *etype, MPI_Datatype *filetype, char *datarep); __attribute__((visibility("default"))) int PMPI_File_read_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_at_all(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_at(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_at(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_seek(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_get_byte_offset(MPI_File fh, MPI_Offset offset, MPI_Offset *disp); __attribute__((visibility("default"))) int PMPI_File_read_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_iread_shared(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_iwrite_shared(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_File_read_ordered(MPI_File fh, void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered(MPI_File fh, const void *buf, int count, MPI_Datatype datatype, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_seek_shared(MPI_File fh, MPI_Offset offset, int whence); __attribute__((visibility("default"))) int PMPI_File_get_position_shared(MPI_File fh, MPI_Offset *offset); __attribute__((visibility("default"))) int PMPI_File_read_at_all_begin(MPI_File fh, MPI_Offset offset, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_at_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_at_all_begin(MPI_File fh, MPI_Offset offset, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_at_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_all_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_all_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_all_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_all_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_read_ordered_begin(MPI_File fh, void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_read_ordered_end(MPI_File fh, void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_write_ordered_begin(MPI_File fh, const void *buf, int count, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_File_write_ordered_end(MPI_File fh, const void *buf, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_File_get_type_extent(MPI_File fh, MPI_Datatype datatype, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_File_set_atomicity(MPI_File fh, int flag); __attribute__((visibility("default"))) int PMPI_File_get_atomicity(MPI_File fh, int *flag); __attribute__((visibility("default"))) int PMPI_File_sync(MPI_File fh); __attribute__((visibility("default"))) int PMPI_Finalize(void); __attribute__((visibility("default"))) int PMPI_Finalized(int *flag); __attribute__((visibility("default"))) int PMPI_Free_mem(void *base); __attribute__((visibility("default"))) int PMPI_Gather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Gatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Igatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Get_address(const void *location, MPI_Aint *address); __attribute__((visibility("default"))) int PMPI_Get_count(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements(const MPI_Status *status, MPI_Datatype datatype, int *count); __attribute__((visibility("default"))) int PMPI_Get_elements_x(const MPI_Status *status, MPI_Datatype datatype, MPI_Count *count); __attribute__((visibility("default"))) int PMPI_Get(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Get_library_version(char *version, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_processor_name(char *name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Get_version(int *version, int *subversion); __attribute__((visibility("default"))) int PMPI_Graph_create(MPI_Comm comm_old, int nnodes, const int index[], const int edges[], int reorder, MPI_Comm *comm_graph); __attribute__((visibility("default"))) int PMPI_Graph_get(MPI_Comm comm, int maxindex, int maxedges, int index[], int edges[]); __attribute__((visibility("default"))) int PMPI_Graph_map(MPI_Comm comm, int nnodes, const int index[], const int edges[], int *newrank); __attribute__((visibility("default"))) int PMPI_Graph_neighbors_count(MPI_Comm comm, int rank, int *nneighbors); __attribute__((visibility("default"))) int PMPI_Graph_neighbors(MPI_Comm comm, int rank, int maxneighbors, int neighbors[]); __attribute__((visibility("default"))) int PMPI_Graphdims_get(MPI_Comm comm, int *nnodes, int *nedges); __attribute__((visibility("default"))) int PMPI_Grequest_complete(MPI_Request request); __attribute__((visibility("default"))) int PMPI_Grequest_start(MPI_Grequest_query_function *query_fn, MPI_Grequest_free_function *free_fn, MPI_Grequest_cancel_function *cancel_fn, void *extra_state, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Group_c2f(MPI_Group group); __attribute__((visibility("default"))) int PMPI_Group_compare(MPI_Group group1, MPI_Group group2, int *result); __attribute__((visibility("default"))) int PMPI_Group_difference(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_excl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) MPI_Group PMPI_Group_f2c(int group); __attribute__((visibility("default"))) int PMPI_Group_free(MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Group_incl(MPI_Group group, int n, const int ranks[], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_intersection(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_excl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_range_incl(MPI_Group group, int n, int ranges[][3], MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Group_rank(MPI_Group group, int *rank); __attribute__((visibility("default"))) int PMPI_Group_size(MPI_Group group, int *size); __attribute__((visibility("default"))) int PMPI_Group_translate_ranks(MPI_Group group1, int n, const int ranks1[], MPI_Group group2, int ranks2[]); __attribute__((visibility("default"))) int PMPI_Group_union(MPI_Group group1, MPI_Group group2, MPI_Group *newgroup); __attribute__((visibility("default"))) int PMPI_Ibsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Improbe(int source, int tag, MPI_Comm comm, int *flag, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Imrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Info_c2f(MPI_Info info); __attribute__((visibility("default"))) int PMPI_Info_create(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_delete(MPI_Info info, const char *key); __attribute__((visibility("default"))) int PMPI_Info_dup(MPI_Info info, MPI_Info *newinfo); __attribute__((visibility("default"))) MPI_Info PMPI_Info_f2c(int info); __attribute__((visibility("default"))) int PMPI_Info_free(MPI_Info *info); __attribute__((visibility("default"))) int PMPI_Info_get(MPI_Info info, const char *key, int valuelen, char *value, int *flag); __attribute__((visibility("default"))) int PMPI_Info_get_nkeys(MPI_Info info, int *nkeys); __attribute__((visibility("default"))) int PMPI_Info_get_nthkey(MPI_Info info, int n, char *key); __attribute__((visibility("default"))) int PMPI_Info_get_valuelen(MPI_Info info, const char *key, int *valuelen, int *flag); __attribute__((visibility("default"))) int PMPI_Info_set(MPI_Info info, const char *key, const char *value); __attribute__((visibility("default"))) int PMPI_Init(int *argc, char ***argv); __attribute__((visibility("default"))) int PMPI_Initialized(int *flag); __attribute__((visibility("default"))) int PMPI_Init_thread(int *argc, char ***argv, int required, int *provided); __attribute__((visibility("default"))) int PMPI_Intercomm_create(MPI_Comm local_comm, int local_leader, MPI_Comm bridge_comm, int remote_leader, int tag, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Intercomm_merge(MPI_Comm intercomm, int high, MPI_Comm *newintercomm); __attribute__((visibility("default"))) int PMPI_Iprobe(int source, int tag, MPI_Comm comm, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Irecv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Irsend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Isend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Issend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Is_thread_main(int *flag); __attribute__((visibility("default"))) int PMPI_Keyval_create(MPI_Copy_function *copy_fn, MPI_Delete_function *delete_fn, int *keyval, void *extra_state) __attribute__((__deprecated__("MPI_Keyval_create is superseded by MPI_Comm_create_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Keyval_free(int *keyval) __attribute__((__deprecated__("MPI_Keyval_free is superseded by MPI_Comm_free_keyval in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Lookup_name(const char *service_name, MPI_Info info, char *port_name); __attribute__((visibility("default"))) int PMPI_Message_c2f(MPI_Message message); __attribute__((visibility("default"))) MPI_Message PMPI_Message_f2c(int message); __attribute__((visibility("default"))) int PMPI_Mprobe(int source, int tag, MPI_Comm comm, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Mrecv(void *buf, int count, MPI_Datatype type, MPI_Message *message, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Neighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgather(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_allgatherv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int displs[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoall(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallv(const void *sendbuf, const int sendcounts[], const int sdispls[], MPI_Datatype sendtype, void *recvbuf, const int recvcounts[], const int rdispls[], MPI_Datatype recvtype, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Neighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ineighbor_alltoallw(const void *sendbuf, const int sendcounts[], const MPI_Aint sdispls[], const MPI_Datatype sendtypes[], void *recvbuf, const int recvcounts[], const MPI_Aint rdispls[], const MPI_Datatype recvtypes[], MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Op_c2f(MPI_Op op); __attribute__((visibility("default"))) int PMPI_Op_commutative(MPI_Op op, int *commute); __attribute__((visibility("default"))) int PMPI_Op_create(MPI_User_function *function, int commute, MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Open_port(MPI_Info info, char *port_name); __attribute__((visibility("default"))) MPI_Op PMPI_Op_f2c(int op); __attribute__((visibility("default"))) int PMPI_Op_free(MPI_Op *op); __attribute__((visibility("default"))) int PMPI_Pack_external(const char datarep[], const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, MPI_Aint outsize, MPI_Aint *position); __attribute__((visibility("default"))) int PMPI_Pack_external_size(const char datarep[], int incount, MPI_Datatype datatype, MPI_Aint *size); __attribute__((visibility("default"))) int PMPI_Pack(const void *inbuf, int incount, MPI_Datatype datatype, void *outbuf, int outsize, int *position, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Pack_size(int incount, MPI_Datatype datatype, MPI_Comm comm, int *size); __attribute__((visibility("default"))) int PMPI_Pcontrol(const int level, ...); __attribute__((visibility("default"))) int PMPI_Probe(int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Publish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Put(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Query_thread(int *provided); __attribute__((visibility("default"))) int PMPI_Raccumulate(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv_init(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Recv(void *buf, int count, MPI_Datatype datatype, int source, int tag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Reduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_local(const void *inbuf, void *inoutbuf, int count, MPI_Datatype datatype, MPI_Op); __attribute__((visibility("default"))) int PMPI_Reduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter(const void *sendbuf, void *recvbuf, const int recvcounts[], MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Reduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Ireduce_scatter_block(const void *sendbuf, void *recvbuf, int recvcount, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Register_datarep(const char *datarep, MPI_Datarep_conversion_function *read_conversion_fn, MPI_Datarep_conversion_function *write_conversion_fn, MPI_Datarep_extent_function *dtype_file_extent_fn, void *extra_state); __attribute__((visibility("default"))) int PMPI_Request_c2f(MPI_Request request); __attribute__((visibility("default"))) MPI_Request PMPI_Request_f2c(int request); __attribute__((visibility("default"))) int PMPI_Request_free(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Request_get_status(MPI_Request request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Rget(void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rget_accumulate(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, void *result_addr, int result_count, MPI_Datatype result_datatype, int target_rank, MPI_Aint target_disp, int target_count, MPI_Datatype target_datatype, MPI_Op op, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rput(const void *origin_addr, int origin_count, MPI_Datatype origin_datatype, int target_rank, MPI_Aint target_disp, int target_cout, MPI_Datatype target_datatype, MPI_Win win, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Rsend(const void *ibuf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Rsend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscan(const void *sendbuf, void *recvbuf, int count, MPI_Datatype datatype, MPI_Op op, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatter(const void *sendbuf, int sendcount, MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Scatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Iscatterv(const void *sendbuf, const int sendcounts[], const int displs[], MPI_Datatype sendtype, void *recvbuf, int recvcount, MPI_Datatype recvtype, int root, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Send(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Sendrecv(const void *sendbuf, int sendcount, MPI_Datatype sendtype, int dest, int sendtag, void *recvbuf, int recvcount, MPI_Datatype recvtype, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Sendrecv_replace(void * buf, int count, MPI_Datatype datatype, int dest, int sendtag, int source, int recvtag, MPI_Comm comm, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Ssend_init(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm, MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Ssend(const void *buf, int count, MPI_Datatype datatype, int dest, int tag, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Start(MPI_Request *request); __attribute__((visibility("default"))) int PMPI_Startall(int count, MPI_Request array_of_requests[]); __attribute__((visibility("default"))) int PMPI_Status_c2f(const MPI_Status *c_status, int *f_status); __attribute__((visibility("default"))) int PMPI_Status_f2c(const int *f_status, MPI_Status *c_status); __attribute__((visibility("default"))) int PMPI_Status_set_cancelled(MPI_Status *status, int flag); __attribute__((visibility("default"))) int PMPI_Status_set_elements(MPI_Status *status, MPI_Datatype datatype, int count); __attribute__((visibility("default"))) int PMPI_Status_set_elements_x(MPI_Status *status, MPI_Datatype datatype, MPI_Count count); __attribute__((visibility("default"))) int PMPI_Testall(int count, MPI_Request array_of_requests[], int *flag, MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Testany(int count, MPI_Request array_of_requests[], int *index, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test(MPI_Request *request, int *flag, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Test_cancelled(const MPI_Status *status, int *flag); __attribute__((visibility("default"))) int PMPI_Testsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Topo_test(MPI_Comm comm, int *status); __attribute__((visibility("default"))) int PMPI_Type_c2f(MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Type_commit(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_contiguous(int count, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_darray(int size, int rank, int ndims, const int gsize_array[], const int distrib_array[], const int darg_array[], const int psize_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_complex(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_integer(int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_f90_real(int p, int r, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed(int count, const int array_of_blocklengths[], const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_keyval(MPI_Type_copy_attr_function *type_copy_attr_fn, MPI_Type_delete_attr_function *type_delete_attr_fn, int *type_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Type_create_hindexed_block(int count, int blocklength, const MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_indexed_block(int count, int blocklength, const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_struct(int count, const int array_of_block_lengths[], const MPI_Aint array_of_displacements[], const MPI_Datatype array_of_types[], MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_subarray(int ndims, const int size_array[], const int subsize_array[], const int start_array[], int order, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_create_resized(MPI_Datatype oldtype, MPI_Aint lb, MPI_Aint extent, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_delete_attr(MPI_Datatype type, int type_keyval); __attribute__((visibility("default"))) int PMPI_Type_dup(MPI_Datatype type, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_extent(MPI_Datatype type, MPI_Aint *extent) __attribute__((__deprecated__("MPI_Type_extent is superseded by MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_free(MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_free_keyval(int *type_keyval); __attribute__((visibility("default"))) MPI_Datatype PMPI_Type_f2c(int datatype); __attribute__((visibility("default"))) int PMPI_Type_get_attr(MPI_Datatype type, int type_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Type_get_contents(MPI_Datatype mtype, int max_integers, int max_addresses, int max_datatypes, int array_of_integers[], MPI_Aint array_of_addresses[], MPI_Datatype array_of_datatypes[]); __attribute__((visibility("default"))) int PMPI_Type_get_envelope(MPI_Datatype type, int *num_integers, int *num_addresses, int *num_datatypes, int *combiner); __attribute__((visibility("default"))) int PMPI_Type_get_extent(MPI_Datatype type, MPI_Aint *lb, MPI_Aint *extent); __attribute__((visibility("default"))) int PMPI_Type_get_extent_x(MPI_Datatype type, MPI_Count *lb, MPI_Count *extent); __attribute__((visibility("default"))) int PMPI_Type_get_name(MPI_Datatype type, char *type_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent(MPI_Datatype datatype, MPI_Aint *true_lb, MPI_Aint *true_extent); __attribute__((visibility("default"))) int PMPI_Type_get_true_extent_x(MPI_Datatype datatype, MPI_Count *true_lb, MPI_Count *true_extent); __attribute__((visibility("default"))) int PMPI_Type_hindexed(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hindexed is superseded by MPI_Type_create_hindexed in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_hvector(int count, int blocklength, MPI_Aint stride, MPI_Datatype oldtype, MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_hvector is superseded by MPI_Type_create_hvector in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_indexed(int count, const int array_of_blocklengths[], const int array_of_displacements[], MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Type_lb(MPI_Datatype type, MPI_Aint *lb) __attribute__((__deprecated__("MPI_Type_lb is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_match_size(int typeclass, int size, MPI_Datatype *type); __attribute__((visibility("default"))) int PMPI_Type_set_attr(MPI_Datatype type, int type_keyval, void *attr_val); __attribute__((visibility("default"))) int PMPI_Type_set_name(MPI_Datatype type, const char *type_name); __attribute__((visibility("default"))) int PMPI_Type_size(MPI_Datatype type, int *size); __attribute__((visibility("default"))) int PMPI_Type_size_x(MPI_Datatype type, MPI_Count *size); __attribute__((visibility("default"))) int PMPI_Type_struct(int count, int array_of_blocklengths[], MPI_Aint array_of_displacements[], MPI_Datatype array_of_types[], MPI_Datatype *newtype) __attribute__((__deprecated__("MPI_Type_struct is superseded by MPI_Type_create_struct in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_ub(MPI_Datatype mtype, MPI_Aint *ub) __attribute__((__deprecated__("MPI_Type_ub is deprecated, use MPI_Type_get_extent in MPI-2.0"))); __attribute__((visibility("default"))) int PMPI_Type_vector(int count, int blocklength, int stride, MPI_Datatype oldtype, MPI_Datatype *newtype); __attribute__((visibility("default"))) int PMPI_Unpack(const void *inbuf, int insize, int *position, void *outbuf, int outcount, MPI_Datatype datatype, MPI_Comm comm); __attribute__((visibility("default"))) int PMPI_Unpublish_name(const char *service_name, MPI_Info info, const char *port_name); __attribute__((visibility("default"))) int PMPI_Unpack_external (const char datarep[], const void *inbuf, MPI_Aint insize, MPI_Aint *position, void *outbuf, int outcount, MPI_Datatype datatype); __attribute__((visibility("default"))) int PMPI_Waitall(int count, MPI_Request array_of_requests[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Waitany(int count, MPI_Request array_of_requests[], int *index, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Wait(MPI_Request *request, MPI_Status *status); __attribute__((visibility("default"))) int PMPI_Waitsome(int incount, MPI_Request array_of_requests[], int *outcount, int array_of_indices[], MPI_Status array_of_statuses[]); __attribute__((visibility("default"))) int PMPI_Win_allocate(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_allocate_shared(MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, void *baseptr, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_attach(MPI_Win win, void *base, MPI_Aint size); __attribute__((visibility("default"))) int PMPI_Win_c2f(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_call_errhandler(MPI_Win win, int errorcode); __attribute__((visibility("default"))) int PMPI_Win_complete(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_create(void *base, MPI_Aint size, int disp_unit, MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_dynamic(MPI_Info info, MPI_Comm comm, MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_create_errhandler(MPI_Win_errhandler_function *function, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_create_keyval(MPI_Win_copy_attr_function *win_copy_attr_fn, MPI_Win_delete_attr_function *win_delete_attr_fn, int *win_keyval, void *extra_state); __attribute__((visibility("default"))) int PMPI_Win_delete_attr(MPI_Win win, int win_keyval); __attribute__((visibility("default"))) int PMPI_Win_detach(MPI_Win win, void *base); __attribute__((visibility("default"))) MPI_Win PMPI_Win_f2c(int win); __attribute__((visibility("default"))) int PMPI_Win_fence(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_flush_local_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_free(MPI_Win *win); __attribute__((visibility("default"))) int PMPI_Win_free_keyval(int *win_keyval); __attribute__((visibility("default"))) int PMPI_Win_get_attr(MPI_Win win, int win_keyval, void *attribute_val, int *flag); __attribute__((visibility("default"))) int PMPI_Win_get_errhandler(MPI_Win win, MPI_Errhandler *errhandler); __attribute__((visibility("default"))) int PMPI_Win_get_group(MPI_Win win, MPI_Group *group); __attribute__((visibility("default"))) int PMPI_Win_get_info(MPI_Win win, MPI_Info *info_used); __attribute__((visibility("default"))) int PMPI_Win_get_name(MPI_Win win, char *win_name, int *resultlen); __attribute__((visibility("default"))) int PMPI_Win_lock(int lock_type, int rank, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_lock_all(int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_post(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_set_attr(MPI_Win win, int win_keyval, void *attribute_val); __attribute__((visibility("default"))) int PMPI_Win_set_errhandler(MPI_Win win, MPI_Errhandler errhandler); __attribute__((visibility("default"))) int PMPI_Win_set_info(MPI_Win win, MPI_Info info); __attribute__((visibility("default"))) int PMPI_Win_set_name(MPI_Win win, const char *win_name); __attribute__((visibility("default"))) int PMPI_Win_shared_query(MPI_Win win, int rank, MPI_Aint *size, int *disp_unit, void *baseptr); __attribute__((visibility("default"))) int PMPI_Win_start(MPI_Group group, int assert, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_sync(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_test(MPI_Win win, int *flag); __attribute__((visibility("default"))) int PMPI_Win_unlock(int rank, MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_unlock_all(MPI_Win win); __attribute__((visibility("default"))) int PMPI_Win_wait(MPI_Win win); __attribute__((visibility("default"))) double PMPI_Wtick(void); __attribute__((visibility("default"))) double PMPI_Wtime(void); __attribute__((visibility("default"))) int PMPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int PMPI_T_finalize (void); __attribute__((visibility("default"))) int PMPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int PMPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int PMPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int PMPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int PMPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int PMPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int PMPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int PMPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int PMPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int PMPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int PMPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int PMPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int PMPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int PMPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int PMPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int PMPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int PMPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_init_thread (int required, int *provided); __attribute__((visibility("default"))) int MPI_T_finalize (void); __attribute__((visibility("default"))) int MPI_T_cvar_get_num (int *num_cvar); __attribute__((visibility("default"))) int MPI_T_cvar_get_info (int cvar_index, char *name, int *name_len, int *verbosity, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *scope); __attribute__((visibility("default"))) int MPI_T_cvar_get_index (const char *name, int *cvar_index); __attribute__((visibility("default"))) int MPI_T_cvar_handle_alloc (int cvar_index, void *obj_handle, MPI_T_cvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_cvar_handle_free (MPI_T_cvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_cvar_read (MPI_T_cvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_cvar_write (MPI_T_cvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_category_get_num(int *num_cat); __attribute__((visibility("default"))) int MPI_T_category_get_info(int cat_index, char *name, int *name_len, char *desc, int *desc_len, int *num_cvars, int *num_pvars, int *num_categories); __attribute__((visibility("default"))) int MPI_T_category_get_index (const char *name, int *category_index); __attribute__((visibility("default"))) int MPI_T_category_get_cvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_pvars(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_get_categories(int cat_index, int len, int indices[]); __attribute__((visibility("default"))) int MPI_T_category_changed(int *stamp); __attribute__((visibility("default"))) int MPI_T_pvar_get_num(int *num_pvar); __attribute__((visibility("default"))) int MPI_T_pvar_get_info(int pvar_index, char *name, int *name_len, int *verbosity, int *var_class, MPI_Datatype *datatype, MPI_T_enum *enumtype, char *desc, int *desc_len, int *bind, int *readonly, int *continuous, int *atomic); __attribute__((visibility("default"))) int MPI_T_pvar_get_index (const char *name, int *pvar_index); __attribute__((visibility("default"))) int MPI_T_pvar_session_create(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_session_free(MPI_T_pvar_session *session); __attribute__((visibility("default"))) int MPI_T_pvar_handle_alloc(MPI_T_pvar_session session, int pvar_index, void *obj_handle, MPI_T_pvar_handle *handle, int *count); __attribute__((visibility("default"))) int MPI_T_pvar_handle_free(MPI_T_pvar_session session, MPI_T_pvar_handle *handle); __attribute__((visibility("default"))) int MPI_T_pvar_start(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_stop(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_read(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_write(MPI_T_pvar_session session, MPI_T_pvar_handle handle, const void *buf); __attribute__((visibility("default"))) int MPI_T_pvar_reset(MPI_T_pvar_session session, MPI_T_pvar_handle handle); __attribute__((visibility("default"))) int MPI_T_pvar_readreset(MPI_T_pvar_session session, MPI_T_pvar_handle handle, void *buf); __attribute__((visibility("default"))) int MPI_T_enum_get_info(MPI_T_enum enumtype, int *num, char *name, int *name_len); __attribute__((visibility("default"))) int MPI_T_enum_get_item(MPI_T_enum enumtype, int index, int *value, char *name, int *name_len); # 4 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c" 2 int ompi_major = 1; int ompi_minor = 8; int ompi_release = 6; Defined "HAVE_OMPI_MAJOR_VERSION" to "1" Defined "HAVE_OMPI_MINOR_VERSION" to "8" Defined "HAVE_OMPI_RELEASE_VERSION" to "6" Checking for functions [MPI_Alltoallw] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Alltoallw(); static void _check_MPI_Alltoallw() { MPI_Alltoallw(); } int main() { _check_MPI_Alltoallw();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Checking for functions [MPI_Type_create_indexed_block] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Type_create_indexed_block(); static void _check_MPI_Type_create_indexed_block() { MPI_Type_create_indexed_block(); } int main() { _check_MPI_Type_create_indexed_block();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Defined "HAVE_MPI_ALLTOALLW" to "1" Checking for functions [MPI_Win_create] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Win_create(); static void _check_MPI_Win_create() { MPI_Win_create(); } int main() { _check_MPI_Win_create();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Defined "HAVE_MPI_WIN_CREATE" to "1" Defined "HAVE_MPI_REPLACE" to "1" Checking for functions [MPI_Comm_spawn MPI_Type_get_envelope MPI_Type_get_extent MPI_Type_dup MPI_Init_thread MPI_Iallreduce MPI_Ibarrier MPI_Finalized MPI_Exscan] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPI_Comm_spawn(); static void _check_MPI_Comm_spawn() { MPI_Comm_spawn(); } char MPI_Type_get_envelope(); static void _check_MPI_Type_get_envelope() { MPI_Type_get_envelope(); } char MPI_Type_get_extent(); static void _check_MPI_Type_get_extent() { MPI_Type_get_extent(); } char MPI_Type_dup(); static void _check_MPI_Type_dup() { MPI_Type_dup(); } char MPI_Init_thread(); static void _check_MPI_Init_thread() { MPI_Init_thread(); } char MPI_Iallreduce(); static void _check_MPI_Iallreduce() { MPI_Iallreduce(); } char MPI_Ibarrier(); static void _check_MPI_Ibarrier() { MPI_Ibarrier(); } char MPI_Finalized(); static void _check_MPI_Finalized() { MPI_Finalized(); } char MPI_Exscan(); static void _check_MPI_Exscan() { MPI_Exscan(); } int main() { _check_MPI_Comm_spawn(); _check_MPI_Type_get_envelope(); _check_MPI_Type_get_extent(); _check_MPI_Type_dup(); _check_MPI_Init_thread(); _check_MPI_Iallreduce(); _check_MPI_Ibarrier(); _check_MPI_Finalized(); _check_MPI_Exscan();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Defined "HAVE_MPI_COMM_SPAWN" to "1" Defined "HAVE_MPI_TYPE_GET_ENVELOPE" to "1" Defined "HAVE_MPI_TYPE_GET_EXTENT" to "1" Defined "HAVE_MPI_TYPE_DUP" to "1" Defined "HAVE_MPI_INIT_THREAD" to "1" Defined "HAVE_MPI_IALLREDUCE" to "1" Defined "HAVE_MPI_IBARRIER" to "1" Defined "HAVE_MPI_FINALIZED" to "1" Defined "HAVE_MPI_EXSCAN" to "1" Checking for functions [MPIX_Iallreduce] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIX_Iallreduce(); static void _check_MPIX_Iallreduce() { MPIX_Iallreduce(); } int main() { _check_MPIX_Iallreduce();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_MPIX_Iallreduce", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_DUP;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_DUP;; return 0; } Defined "HAVE_MPI_COMBINER_DUP" to "1" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c:6:5: warning: unused variable 'combiner' [-Wunused-variable] int combiner = MPI_COMBINER_CONTIGUOUS;; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { int combiner = MPI_COMBINER_CONTIGUOUS;; return 0; } Defined "HAVE_MPI_COMBINER_CONTIGUOUS" to "1" Checking for functions [MPIDI_CH3I_sock_set] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_set(); static void _check_MPIDI_CH3I_sock_set() { MPIDI_CH3I_sock_set(); } int main() { _check_MPIDI_CH3I_sock_set();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_MPIDI_CH3I_sock_set", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for functions [MPIDI_CH3I_sock_fixed_nbc_progress] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char MPIDI_CH3I_sock_fixed_nbc_progress(); static void _check_MPIDI_CH3I_sock_fixed_nbc_progress() { MPIDI_CH3I_sock_fixed_nbc_progress(); } int main() { _check_MPIDI_CH3I_sock_fixed_nbc_progress();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_MPIDI_CH3I_sock_fixed_nbc_progress", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:130) TESTING: checkSharedLibrary from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:130) Sets flag indicating if MPI libraries are shared or not and determines if MPI libraries CANNOT be used by shared libraries ================================================================================ TEST configureMPIEXEC from config.packages.MPI(/Users/justin/Software/petsc/config/BuildSystem/config/packages/MPI.py:143) TESTING: configureMPIEXEC from config.packages.MPI(config/BuildSystem/config/packages/MPI.py:143) Checking for mpiexec Pushing language C Popping language C Checking for program /usr/local/opt/open-mpi/bin/mpiexec...found Defined make macro "MPIEXEC" to "/usr/local/opt/open-mpi/bin/mpiexec" Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int init(int argc, char *argv[]) { int isInitialized; MPI_Init(&argc, &argv); MPI_Initialized(&isInitialized); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #ifdef __cplusplus extern "C" #endif int checkInit(void) { int isInitialized; MPI_Initialized(&isInitialized); if (isInitialized) MPI_Finalize(); return (int) isInitialized; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/libconftest.dylib -dynamiclib -single_module -undefined dynamic_lookup -multiply_defined suppress -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" #include #include #ifdef PETSC_HAVE_DLFCN_H #include #endif int main() { int argc = 1; char *argv[2] = {(char *) "conftest", NULL}; void *lib; int (*init)(int, char **); int (*checkInit)(void); lib = dlopen("/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/lib1.dylib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib1.so: %s\n", dlerror()); exit(1); } init = (int (*)(int, char **)) dlsym(lib, "init"); if (!init) { fprintf(stderr, "Could not find initialization function\n"); exit(1); } if (!(*init)(argc, argv)) { fprintf(stderr, "Could not initialize library\n"); exit(1); } lib = dlopen("/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/lib2.dylib", RTLD_LAZY); if (!lib) { fprintf(stderr, "Could not open lib2.so: %s\n", dlerror()); exit(1); } checkInit = (int (*)(void)) dlsym(lib, "checkInit"); if (!checkInit) { fprintf(stderr, "Could not find initialization check function\n"); exit(1); } if (!(*checkInit)()) { fprintf(stderr, "Did not link with shared library\n"); exit(2); } ; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl -ldl Testing executable /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest to see if it can be run Executing: /usr/local/opt/open-mpi/bin/mpiexec /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest Executing: /usr/local/opt/open-mpi/bin/mpiexec /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest stdout: ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[62042,1],0] Exit code: 1 -------------------------------------------------------------------------- ERROR while running executable: Could not execute "/usr/local/opt/open-mpi/bin/mpiexec /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest": ------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code.. Per user-direction, the job has been aborted. ------------------------------------------------------- -------------------------------------------------------------------------- mpiexec detected that one or more processes exited with non-zero status, thus causing the job to be terminated. The first process to do so was: Process name: [[62042,1],0] Exit code: 1 --------------------------------------------------------------------------Could not find initialization check function Could not find initialization check function Library was not shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.yaml(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.yaml(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.valgrind(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:579) TESTING: configureLibrary from config.packages.valgrind(config/BuildSystem/config/package.py:579) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional valgrind Not checking for library in Compiler specific search VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Compiler specific search VALGRIND: ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directorycompilation terminated.: Popping language C Not checking for library in Package specific search directory VALGRIND: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Package specific search directory VALGRIND: ['/usr/local/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['valgrind/valgrind.h'] in ['/usr/local/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/usr/local/include -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Possible ERROR while running preprocessor: exit code 256 stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. Source: #include "confdefs.h" #include "conffix.h" #include Preprocess stderr before filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directory compilation terminated. : Preprocess stderr after filtering:/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c:3:31: fatal error: valgrind/valgrind.h: No such file or directorycompilation terminated.: Popping language C VALGRIND: DirPath not found.. skipping: /usr/local/lib64 VALGRIND: SearchDir DirPath not found.. skipping: /opt/local Executing: uname -s stdout: Darwin Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.tetgen(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.tetgen(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.tchem(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.tchem(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.ssl(/Users/justin/Software/petsc/config/BuildSystem/config/packages/ssl.py:23) TESTING: configureLibrary from config.packages.ssl(config/BuildSystem/config/packages/ssl.py:23) ================================================================================== Checking for a functional ssl Checking for library in Compiler specific search SSL: [] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_SSLv23_method", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search SSL: ['libssl.a', 'libcrypto.a'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SSLv23_method] in library ['libssl.a', 'libcrypto.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SSLv23_method(); static void _check_SSLv23_method() { SSLv23_method(); } int main() { _check_SSLv23_method();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lssl -lcrypto -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBSSL" to "1" Defined "HAVE_LIBCRYPTO" to "1" Popping language C Checking for headers Compiler specific search SSL: ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['openssl/ssl.h'] in ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 173 "/usr/include/openssl/ssl.h" 3 4 # 1 "/usr/include/AvailabilityMacros.h" 1 3 4 # 174 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 176 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/comp.h" 1 3 4 # 1 "/usr/include/openssl/crypto.h" 1 3 4 # 122 "/usr/include/openssl/crypto.h" 3 4 # 1 "/usr/include/stdlib.h" 1 3 4 # 61 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 62 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 64 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/wait.h" 1 3 4 # 79 "/usr/include/sys/wait.h" 3 4 typedef enum { P_ALL, P_PID, P_PGID } idtype_t; # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 90 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 91 "/usr/include/sys/wait.h" 2 3 4 # 109 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 73 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 74 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 148 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 155 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 156 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 110 "/usr/include/sys/wait.h" 2 3 4 # 1 "/usr/include/sys/resource.h" 1 3 4 # 72 "/usr/include/sys/resource.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 27 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 28 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 29 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 30 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 31 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 63 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 64 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 73 "/usr/include/sys/resource.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 81 "/usr/include/sys/resource.h" 2 3 4 # 89 "/usr/include/sys/resource.h" 3 4 typedef __uint64_t rlim_t; # 152 "/usr/include/sys/resource.h" 3 4 struct rusage { struct timeval ru_utime; struct timeval ru_stime; # 163 "/usr/include/sys/resource.h" 3 4 long ru_maxrss; long ru_ixrss; long ru_idrss; long ru_isrss; long ru_minflt; long ru_majflt; long ru_nswap; long ru_inblock; long ru_oublock; long ru_msgsnd; long ru_msgrcv; long ru_nsignals; long ru_nvcsw; long ru_nivcsw; }; # 192 "/usr/include/sys/resource.h" 3 4 typedef void *rusage_info_t; struct rusage_info_v0 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; }; struct rusage_info_v1 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; }; struct rusage_info_v2 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; }; struct rusage_info_v3 { uint8_t ri_uuid[16]; uint64_t ri_user_time; uint64_t ri_system_time; uint64_t ri_pkg_idle_wkups; uint64_t ri_interrupt_wkups; uint64_t ri_pageins; uint64_t ri_wired_size; uint64_t ri_resident_size; uint64_t ri_phys_footprint; uint64_t ri_proc_start_abstime; uint64_t ri_proc_exit_abstime; uint64_t ri_child_user_time; uint64_t ri_child_system_time; uint64_t ri_child_pkg_idle_wkups; uint64_t ri_child_interrupt_wkups; uint64_t ri_child_pageins; uint64_t ri_child_elapsed_abstime; uint64_t ri_diskio_bytesread; uint64_t ri_diskio_byteswritten; uint64_t ri_cpu_time_qos_default; uint64_t ri_cpu_time_qos_maintenance; uint64_t ri_cpu_time_qos_background; uint64_t ri_cpu_time_qos_utility; uint64_t ri_cpu_time_qos_legacy; uint64_t ri_cpu_time_qos_user_initiated; uint64_t ri_cpu_time_qos_user_interactive; uint64_t ri_billed_system_time; uint64_t ri_serviced_system_time; }; typedef struct rusage_info_v3 rusage_info_current; # 325 "/usr/include/sys/resource.h" 3 4 struct rlimit { rlim_t rlim_cur; rlim_t rlim_max; }; # 353 "/usr/include/sys/resource.h" 3 4 struct proc_rlimit_control_wakeupmon { uint32_t wm_flags; int32_t wm_rate; }; # 382 "/usr/include/sys/resource.h" 3 4 int getpriority(int, id_t); int getiopolicy_np(int, int) ; int getrlimit(int, struct rlimit *) __asm("_" "getrlimit" ); int getrusage(int, struct rusage *); int setpriority(int, id_t, int); int setiopolicy_np(int, int, int) ; int setrlimit(int, const struct rlimit *) __asm("_" "setrlimit" ); # 111 "/usr/include/sys/wait.h" 2 3 4 # 186 "/usr/include/sys/wait.h" 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 187 "/usr/include/sys/wait.h" 2 3 4 union wait { int w_status; struct { unsigned int w_Termsig:7, w_Coredump:1, w_Retcode:8, w_Filler:16; } w_T; struct { unsigned int w_Stopval:8, w_Stopsig:8, w_Filler:16; } w_S; }; # 247 "/usr/include/sys/wait.h" 3 4 pid_t wait(int *) __asm("_" "wait" ); pid_t waitpid(pid_t, int *, int) __asm("_" "waitpid" ); int waitid(idtype_t, id_t, siginfo_t *, int) __asm("_" "waitid" ); pid_t wait3(int *, int, struct rusage *); pid_t wait4(pid_t, int *, int, struct rusage *); # 66 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/alloca.h" 1 3 4 # 31 "/usr/include/alloca.h" 3 4 void *alloca(size_t); # 68 "/usr/include/stdlib.h" 2 3 4 # 76 "/usr/include/stdlib.h" 3 4 # 1 "/usr/include/sys/_types/_ct_rune_t.h" 1 3 4 # 31 "/usr/include/sys/_types/_ct_rune_t.h" 3 4 typedef __darwin_ct_rune_t ct_rune_t; # 77 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_rune_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rune_t.h" 3 4 typedef __darwin_rune_t rune_t; # 78 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_wchar_t.h" 1 3 4 # 33 "/usr/include/sys/_types/_wchar_t.h" 3 4 typedef __darwin_wchar_t wchar_t; # 81 "/usr/include/stdlib.h" 2 3 4 typedef struct { int quot; int rem; } div_t; typedef struct { long quot; long rem; } ldiv_t; typedef struct { long long quot; long long rem; } lldiv_t; # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 100 "/usr/include/stdlib.h" 2 3 4 # 117 "/usr/include/stdlib.h" 3 4 extern int __mb_cur_max; # 127 "/usr/include/stdlib.h" 3 4 void abort(void) __attribute__((noreturn)); int abs(int) __attribute__((const)); int atexit(void (*)(void)); double atof(const char *); int atoi(const char *); long atol(const char *); long long atoll(const char *); void *bsearch(const void *, const void *, size_t, size_t, int (*)(const void *, const void *)); void *calloc(size_t, size_t); div_t div(int, int) __attribute__((const)); void exit(int) __attribute__((noreturn)); void free(void *); char *getenv(const char *); long labs(long) __attribute__((const)); ldiv_t ldiv(long, long) __attribute__((const)); long long llabs(long long); lldiv_t lldiv(long long, long long); void *malloc(size_t); int mblen(const char *, size_t); size_t mbstowcs(wchar_t * restrict , const char * restrict, size_t); int mbtowc(wchar_t * restrict, const char * restrict, size_t); int posix_memalign(void **, size_t, size_t) ; void qsort(void *, size_t, size_t, int (*)(const void *, const void *)); int rand(void); void *realloc(void *, size_t); void srand(unsigned); double strtod(const char *, char **) __asm("_" "strtod" ); float strtof(const char *, char **) __asm("_" "strtof" ); long strtol(const char *, char **, int); long double strtold(const char *, char **); long long strtoll(const char *, char **, int); unsigned long strtoul(const char *, char **, int); unsigned long long strtoull(const char *, char **, int); int system(const char *) __asm("_" "system" ) ; size_t wcstombs(char * restrict, const wchar_t * restrict, size_t); int wctomb(char *, wchar_t); void _Exit(int) __attribute__((noreturn)); long a64l(const char *); double drand48(void); char *ecvt(double, int, int *restrict, int *restrict); double erand48(unsigned short[3]); char *fcvt(double, int, int *restrict, int *restrict); char *gcvt(double, int, char *); int getsubopt(char **, char * const *, char **); int grantpt(int); char *initstate(unsigned, char *, size_t); long jrand48(unsigned short[3]); char *l64a(long); void lcong48(unsigned short[7]); long lrand48(void); char *mktemp(char *); int mkstemp(char *); long mrand48(void); long nrand48(unsigned short[3]); int posix_openpt(int); char *ptsname(int); int putenv(char *) __asm("_" "putenv" ); long random(void); int rand_r(unsigned *); char *realpath(const char * restrict, char * restrict) __asm("_" "realpath" "$DARWIN_EXTSN"); unsigned short *seed48(unsigned short[3]); int setenv(const char *, const char *, int) __asm("_" "setenv" ); void setkey(const char *) __asm("_" "setkey" ); char *setstate(const char *); void srand48(long); void srandom(unsigned); int unlockpt(int); int unsetenv(const char *) __asm("_" "unsetenv" ); # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 81 "/usr/include/i386/types.h" 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 97 "/usr/include/i386/types.h" 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 239 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 241 "/usr/include/stdlib.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 242 "/usr/include/stdlib.h" 2 3 4 u_int32_t arc4random(void); void arc4random_addrandom(unsigned char * , int ); void arc4random_buf(void * , size_t ) ; void arc4random_stir(void); u_int32_t arc4random_uniform(u_int32_t ) ; char *cgetcap(char *, const char *, int); int cgetclose(void); int cgetent(char **, char **, const char *); int cgetfirst(char **, char **); int cgetmatch(const char *, const char *); int cgetnext(char **, char **); int cgetnum(char *, const char *, long *); int cgetset(const char *); int cgetstr(char *, const char *, char **); int cgetustr(char *, const char *, char **); int daemon(int, int) __asm("_" "daemon" "$1050") __attribute__((deprecated)); char *devname(dev_t, mode_t); char *devname_r(dev_t, mode_t, char *buf, int len); char *getbsize(int *, long *); int getloadavg(double [], int); const char *getprogname(void); int heapsort(void *, size_t, size_t, int (*)(const void *, const void *)); int mergesort(void *, size_t, size_t, int (*)(const void *, const void *)); void psort(void *, size_t, size_t, int (*)(const void *, const void *)) ; void psort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)) ; void qsort_r(void *, size_t, size_t, void *, int (*)(void *, const void *, const void *)); int radixsort(const unsigned char **, int, const unsigned char *, unsigned); void setprogname(const char *); int sradixsort(const unsigned char **, int, const unsigned char *, unsigned); void sranddev(void); void srandomdev(void); void *reallocf(void *, size_t); long long strtoq(const char *, char **, int); unsigned long long strtouq(const char *, char **, int); extern char *suboptarg; void *valloc(size_t); # 123 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 125 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/stdio.h" 1 3 4 # 71 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/sys/_types/_va_list.h" 1 3 4 # 31 "/usr/include/sys/_types/_va_list.h" 3 4 typedef __darwin_va_list va_list; # 72 "/usr/include/stdio.h" 2 3 4 # 1 "/usr/include/sys/stdio.h" 1 3 4 # 37 "/usr/include/sys/stdio.h" 3 4 int renameat(int, const char *, int, const char *) ; # 76 "/usr/include/stdio.h" 2 3 4 typedef __darwin_off_t fpos_t; # 88 "/usr/include/stdio.h" 3 4 struct __sbuf { unsigned char *_base; int _size; }; struct __sFILEX; # 122 "/usr/include/stdio.h" 3 4 typedef struct __sFILE { unsigned char *_p; int _r; int _w; short _flags; short _file; struct __sbuf _bf; int _lbfsize; void *_cookie; int (*_close)(void *); int (*_read) (void *, char *, int); fpos_t (*_seek) (void *, fpos_t, int); int (*_write)(void *, const char *, int); struct __sbuf _ub; struct __sFILEX *_extra; int _ur; unsigned char _ubuf[3]; unsigned char _nbuf[1]; struct __sbuf _lb; int _blksize; fpos_t _offset; } FILE; extern FILE *__stdinp; extern FILE *__stdoutp; extern FILE *__stderrp; # 230 "/usr/include/stdio.h" 3 4 void clearerr(FILE *); int fclose(FILE *); int feof(FILE *); int ferror(FILE *); int fflush(FILE *); int fgetc(FILE *); int fgetpos(FILE * restrict, fpos_t *); char *fgets(char * restrict, int, FILE *); FILE *fopen(const char * restrict, const char * restrict) __asm("_" "fopen" ); int fprintf(FILE * restrict, const char * restrict, ...) __attribute__((__format__ (__printf__, 2, 3))); int fputc(int, FILE *); int fputs(const char * restrict, FILE * restrict) __asm("_" "fputs" ); size_t fread(void * restrict, size_t, size_t, FILE * restrict); FILE *freopen(const char * restrict, const char * restrict, FILE * restrict) __asm("_" "freopen" ); int fscanf(FILE * restrict, const char * restrict, ...) __attribute__((__format__ (__scanf__, 2, 3))); int fseek(FILE *, long, int); int fsetpos(FILE *, const fpos_t *); long ftell(FILE *); size_t fwrite(const void * restrict, size_t, size_t, FILE * restrict) __asm("_" "fwrite" ); int getc(FILE *); int getchar(void); char *gets(char *); void perror(const char *); int printf(const char * restrict, ...) __attribute__((__format__ (__printf__, 1, 2))); int putc(int, FILE *); int putchar(int); int puts(const char *); int remove(const char *); int rename (const char *, const char *); void rewind(FILE *); int scanf(const char * restrict, ...) __attribute__((__format__ (__scanf__, 1, 2))); void setbuf(FILE * restrict, char * restrict); int setvbuf(FILE * restrict, char * restrict, int, size_t); int sprintf(char * restrict, const char * restrict, ...) __attribute__((__format__ (__printf__, 2, 3))); int sscanf(const char * restrict, const char * restrict, ...) __attribute__((__format__ (__scanf__, 2, 3))); FILE *tmpfile(void); __attribute__((deprecated("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tmpnam(3), it is highly recommended that you use mkstemp(3) instead."))) char *tmpnam(char *); int ungetc(int, FILE *); int vfprintf(FILE * restrict, const char * restrict, va_list) __attribute__((__format__ (__printf__, 2, 0))); int vprintf(const char * restrict, va_list) __attribute__((__format__ (__printf__, 1, 0))); int vsprintf(char * restrict, const char * restrict, va_list) __attribute__((__format__ (__printf__, 2, 0))); # 292 "/usr/include/stdio.h" 3 4 char *ctermid(char *); FILE *fdopen(int, const char *) __asm("_" "fdopen" ); int fileno(FILE *); # 314 "/usr/include/stdio.h" 3 4 int pclose(FILE *); FILE *popen(const char *, const char *) __asm("_" "popen" ); # 336 "/usr/include/stdio.h" 3 4 int __srget(FILE *); int __svfscanf(FILE *, const char *, va_list) __attribute__((__format__ (__scanf__, 2, 0))); int __swbuf(int, FILE *); extern __inline __attribute__((__gnu_inline__)) __attribute__ ((__always_inline__)) int __sputc(int _c, FILE *_p) { if (--_p->_w >= 0 || (_p->_w >= _p->_lbfsize && (char)_c != '\n')) return (*_p->_p++ = _c); else return (__swbuf(_c, _p)); } # 373 "/usr/include/stdio.h" 3 4 void flockfile(FILE *); int ftrylockfile(FILE *); void funlockfile(FILE *); int getc_unlocked(FILE *); int getchar_unlocked(void); int putc_unlocked(int, FILE *); int putchar_unlocked(int); int getw(FILE *); int putw(int, FILE *); __attribute__((deprecated("This function is provided for compatibility reasons only. Due to security concerns inherent in the design of tempnam(3), it is highly recommended that you use mkstemp(3) instead."))) char *tempnam(const char *, const char *) __asm("_" "tempnam" ); # 411 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 412 "/usr/include/stdio.h" 2 3 4 int fseeko(FILE *, off_t, int); off_t ftello(FILE *); int snprintf(char * restrict, size_t, const char * restrict, ...) __attribute__((__format__ (__printf__, 3, 4))); int vfscanf(FILE * restrict, const char * restrict, va_list) __attribute__((__format__ (__scanf__, 2, 0))); int vscanf(const char * restrict, va_list) __attribute__((__format__ (__scanf__, 1, 0))); int vsnprintf(char * restrict, size_t, const char * restrict, va_list) __attribute__((__format__ (__printf__, 3, 0))); int vsscanf(const char * restrict, const char * restrict, va_list) __attribute__((__format__ (__scanf__, 2, 0))); # 436 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 437 "/usr/include/stdio.h" 2 3 4 int dprintf(int, const char * restrict, ...) __attribute__((__format__ (__printf__, 2, 3))) ; int vdprintf(int, const char * restrict, va_list) __attribute__((__format__ (__printf__, 2, 0))) ; ssize_t getdelim(char ** restrict, size_t * restrict, int, FILE * restrict) ; ssize_t getline(char ** restrict, size_t * restrict, FILE * restrict) ; extern const int sys_nerr; extern const char *const sys_errlist[]; int asprintf(char ** restrict, const char * restrict, ...) __attribute__((__format__ (__printf__, 2, 3))); char *ctermid_r(char *); char *fgetln(FILE *, size_t *); const char *fmtcheck(const char *, const char *); int fpurge(FILE *); void setbuffer(FILE *, char *, int); int setlinebuf(FILE *); int vasprintf(char ** restrict, const char * restrict, va_list) __attribute__((__format__ (__printf__, 2, 0))); FILE *zopen(const char *, const char *, int); FILE *funopen(const void *, int (*)(void *, char *, int), int (*)(void *, const char *, int), fpos_t (*)(void *, fpos_t, int), int (*)(void *)); # 492 "/usr/include/stdio.h" 3 4 # 1 "/usr/include/secure/_stdio.h" 1 3 4 # 31 "/usr/include/secure/_stdio.h" 3 4 # 1 "/usr/include/secure/_common.h" 1 3 4 # 32 "/usr/include/secure/_stdio.h" 2 3 4 # 42 "/usr/include/secure/_stdio.h" 3 4 extern int __sprintf_chk (char * restrict, int, size_t, const char * restrict, ...); # 52 "/usr/include/secure/_stdio.h" 3 4 extern int __snprintf_chk (char * restrict, size_t, int, size_t, const char * restrict, ...); extern int __vsprintf_chk (char * restrict, int, size_t, const char * restrict, va_list); extern int __vsnprintf_chk (char * restrict, size_t, int, size_t, const char * restrict, va_list); # 493 "/usr/include/stdio.h" 2 3 4 # 128 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/stack.h" 1 3 4 # 68 "/usr/include/openssl/stack.h" 3 4 typedef struct stack_st { int num; char **data; int sorted; int num_alloc; int (*comp)(const char * const *, const char * const *) __attribute__((deprecated)); } STACK; int sk_num(const STACK *) __attribute__((deprecated)); char *sk_value(const STACK *, int) __attribute__((deprecated)); char *sk_set(STACK *, int, char *) __attribute__((deprecated)); STACK *sk_new(int (*cmp)(const char * const *, const char * const *)) __attribute__((deprecated)); STACK *sk_new_null(void) __attribute__((deprecated)); void sk_free(STACK *) __attribute__((deprecated)); void sk_pop_free(STACK *st, void (*func)(void *)) __attribute__((deprecated)); int sk_insert(STACK *sk,char *data,int where) __attribute__((deprecated)); char *sk_delete(STACK *st,int loc) __attribute__((deprecated)); char *sk_delete_ptr(STACK *st, char *p) __attribute__((deprecated)); int sk_find(STACK *st,char *data) __attribute__((deprecated)); int sk_find_ex(STACK *st,char *data) __attribute__((deprecated)); int sk_push(STACK *st,char *data) __attribute__((deprecated)); int sk_unshift(STACK *st,char *data) __attribute__((deprecated)); char *sk_shift(STACK *st) __attribute__((deprecated)); char *sk_pop(STACK *st) __attribute__((deprecated)); void sk_zero(STACK *st) __attribute__((deprecated)); int (*sk_set_cmp_func(STACK *sk, int (*c)(const char * const *, const char * const *))) (const char * const *, const char * const *) __attribute__((deprecated)); STACK *sk_dup(STACK *st) __attribute__((deprecated)); void sk_sort(STACK *st) __attribute__((deprecated)); int sk_is_sorted(const STACK *st) __attribute__((deprecated)); # 131 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/safestack.h" 1 3 4 # 132 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/opensslv.h" 1 3 4 # 133 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/ossl_typ.h" 1 3 4 # 58 "/usr/include/openssl/ossl_typ.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/ossl_typ.h" 2 3 4 # 79 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct asn1_string_st ASN1_INTEGER; typedef struct asn1_string_st ASN1_ENUMERATED; typedef struct asn1_string_st ASN1_BIT_STRING; typedef struct asn1_string_st ASN1_OCTET_STRING; typedef struct asn1_string_st ASN1_PRINTABLESTRING; typedef struct asn1_string_st ASN1_T61STRING; typedef struct asn1_string_st ASN1_IA5STRING; typedef struct asn1_string_st ASN1_GENERALSTRING; typedef struct asn1_string_st ASN1_UNIVERSALSTRING; typedef struct asn1_string_st ASN1_BMPSTRING; typedef struct asn1_string_st ASN1_UTCTIME; typedef struct asn1_string_st ASN1_TIME; typedef struct asn1_string_st ASN1_GENERALIZEDTIME; typedef struct asn1_string_st ASN1_VISIBLESTRING; typedef struct asn1_string_st ASN1_UTF8STRING; typedef int ASN1_BOOLEAN; typedef int ASN1_NULL; # 110 "/usr/include/openssl/ossl_typ.h" 3 4 typedef struct bignum_st BIGNUM; typedef struct bignum_ctx BN_CTX; typedef struct bn_blinding_st BN_BLINDING; typedef struct bn_mont_ctx_st BN_MONT_CTX; typedef struct bn_recp_ctx_st BN_RECP_CTX; typedef struct bn_gencb_st BN_GENCB; typedef struct buf_mem_st BUF_MEM; typedef struct evp_cipher_st EVP_CIPHER; typedef struct evp_cipher_ctx_st EVP_CIPHER_CTX; typedef struct env_md_st EVP_MD; typedef struct env_md_ctx_st EVP_MD_CTX; typedef struct evp_pkey_st EVP_PKEY; typedef struct dh_st DH; typedef struct dh_method DH_METHOD; typedef struct dsa_st DSA; typedef struct dsa_method DSA_METHOD; typedef struct rsa_st RSA; typedef struct rsa_meth_st RSA_METHOD; typedef struct rand_meth_st RAND_METHOD; typedef struct ecdh_method ECDH_METHOD; typedef struct ecdsa_method ECDSA_METHOD; typedef struct x509_st X509; typedef struct X509_algor_st X509_ALGOR; typedef struct X509_crl_st X509_CRL; typedef struct X509_name_st X509_NAME; typedef struct x509_store_st X509_STORE; typedef struct x509_store_ctx_st X509_STORE_CTX; typedef struct ssl_st SSL; typedef struct ssl_ctx_st SSL_CTX; typedef struct v3_ext_ctx X509V3_CTX; typedef struct conf_st CONF; typedef struct store_st STORE; typedef struct store_method_st STORE_METHOD; typedef struct ui_st UI; typedef struct ui_method_st UI_METHOD; typedef struct st_ERR_FNS ERR_FNS; typedef struct engine_st ENGINE; typedef struct X509_POLICY_NODE_st X509_POLICY_NODE; typedef struct X509_POLICY_LEVEL_st X509_POLICY_LEVEL; typedef struct X509_POLICY_TREE_st X509_POLICY_TREE; typedef struct X509_POLICY_CACHE_st X509_POLICY_CACHE; typedef struct crypto_ex_data_st CRYPTO_EX_DATA; typedef int CRYPTO_EX_new(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef void CRYPTO_EX_free(void *parent, void *ptr, CRYPTO_EX_DATA *ad, int idx, long argl, void *argp); typedef int CRYPTO_EX_dup(CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from, void *from_d, int idx, long argl, void *argp); typedef struct ocsp_req_ctx_st OCSP_REQ_CTX; typedef struct ocsp_response_st OCSP_RESPONSE; typedef struct ocsp_responder_id_st OCSP_RESPID; # 134 "/usr/include/openssl/crypto.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 58 "/usr/include/openssl/symhacks.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 59 "/usr/include/openssl/symhacks.h" 2 3 4 # 142 "/usr/include/openssl/crypto.h" 2 3 4 # 173 "/usr/include/openssl/crypto.h" 3 4 typedef struct openssl_item_st { int code; void *value; size_t value_size; size_t *value_length; } OPENSSL_ITEM; # 262 "/usr/include/openssl/crypto.h" 3 4 typedef struct { int references; struct CRYPTO_dynlock_value *data; } CRYPTO_dynlock; # 289 "/usr/include/openssl/crypto.h" 3 4 typedef struct bio_st BIO_dummy; struct crypto_ex_data_st { STACK *sk; int dummy; }; typedef struct crypto_ex_data_func_st { long argl; void *argp; CRYPTO_EX_new *new_func; CRYPTO_EX_free *free_func; CRYPTO_EX_dup *dup_func; } CRYPTO_EX_DATA_FUNCS; # 352 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_malloc_debug_init(void) __attribute__((deprecated)); int CRYPTO_mem_ctrl(int mode) __attribute__((deprecated)); int CRYPTO_is_mem_check_on(void) __attribute__((deprecated)); # 382 "/usr/include/openssl/crypto.h" 3 4 const char *SSLeay_version(int type) __attribute__((deprecated)); unsigned long SSLeay(void) __attribute__((deprecated)); int OPENSSL_issetugid(void) __attribute__((deprecated)); typedef struct st_CRYPTO_EX_DATA_IMPL CRYPTO_EX_DATA_IMPL; const CRYPTO_EX_DATA_IMPL *CRYPTO_get_ex_data_implementation(void) __attribute__((deprecated)); int CRYPTO_set_ex_data_implementation(const CRYPTO_EX_DATA_IMPL *i) __attribute__((deprecated)); int CRYPTO_ex_data_new_class(void) __attribute__((deprecated)); int CRYPTO_get_ex_new_index(int class_index, long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int CRYPTO_new_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad) __attribute__((deprecated)); int CRYPTO_dup_ex_data(int class_index, CRYPTO_EX_DATA *to, CRYPTO_EX_DATA *from) __attribute__((deprecated)); void CRYPTO_free_ex_data(int class_index, void *obj, CRYPTO_EX_DATA *ad) __attribute__((deprecated)); int CRYPTO_set_ex_data(CRYPTO_EX_DATA *ad, int idx, void *val) __attribute__((deprecated)); void *CRYPTO_get_ex_data(const CRYPTO_EX_DATA *ad,int idx) __attribute__((deprecated)); void CRYPTO_cleanup_all_ex_data(void) __attribute__((deprecated)); int CRYPTO_get_new_lockid(char *name) __attribute__((deprecated)); int CRYPTO_num_locks(void) __attribute__((deprecated)); void CRYPTO_lock(int mode, int type,const char *file,int line) __attribute__((deprecated)); void CRYPTO_set_locking_callback(void (*func)(int mode,int type, const char *file,int line)) __attribute__((deprecated)); void (*CRYPTO_get_locking_callback(void))(int mode,int type,const char *file, int line) __attribute__((deprecated)); void CRYPTO_set_add_lock_callback(int (*func)(int *num,int mount,int type, const char *file, int line)) __attribute__((deprecated)); int (*CRYPTO_get_add_lock_callback(void))(int *num,int mount,int type, const char *file,int line) __attribute__((deprecated)); void CRYPTO_set_id_callback(unsigned long (*func)(void)) __attribute__((deprecated)); unsigned long (*CRYPTO_get_id_callback(void))(void) __attribute__((deprecated)); unsigned long CRYPTO_thread_id(void) __attribute__((deprecated)); const char *CRYPTO_get_lock_name(int type) __attribute__((deprecated)); int CRYPTO_add_lock(int *pointer,int amount,int type, const char *file, int line) __attribute__((deprecated)); void int_CRYPTO_set_do_dynlock_callback( void (*do_dynlock_cb)(int mode, int type, const char *file, int line)) __attribute__((deprecated)); int CRYPTO_get_new_dynlockid(void) __attribute__((deprecated)); void CRYPTO_destroy_dynlockid(int i) __attribute__((deprecated)); struct CRYPTO_dynlock_value *CRYPTO_get_dynlock_value(int i) __attribute__((deprecated)); void CRYPTO_set_dynlock_create_callback(struct CRYPTO_dynlock_value *(*dyn_create_function)(const char *file, int line)) __attribute__((deprecated)); void CRYPTO_set_dynlock_lock_callback(void (*dyn_lock_function)(int mode, struct CRYPTO_dynlock_value *l, const char *file, int line)) __attribute__((deprecated)); void CRYPTO_set_dynlock_destroy_callback(void (*dyn_destroy_function)(struct CRYPTO_dynlock_value *l, const char *file, int line)) __attribute__((deprecated)); struct CRYPTO_dynlock_value *(*CRYPTO_get_dynlock_create_callback(void))(const char *file,int line) __attribute__((deprecated)); void (*CRYPTO_get_dynlock_lock_callback(void))(int mode, struct CRYPTO_dynlock_value *l, const char *file,int line) __attribute__((deprecated)); void (*CRYPTO_get_dynlock_destroy_callback(void))(struct CRYPTO_dynlock_value *l, const char *file,int line) __attribute__((deprecated)); int CRYPTO_set_mem_functions(void *(*m)(size_t),void *(*r)(void *,size_t), void (*f)(void *)) __attribute__((deprecated)); int CRYPTO_set_locked_mem_functions(void *(*m)(size_t), void (*free_func)(void *)) __attribute__((deprecated)); int CRYPTO_set_mem_ex_functions(void *(*m)(size_t,const char *,int), void *(*r)(void *,size_t,const char *,int), void (*f)(void *)) __attribute__((deprecated)); int CRYPTO_set_locked_mem_ex_functions(void *(*m)(size_t,const char *,int), void (*free_func)(void *)) __attribute__((deprecated)); int CRYPTO_set_mem_debug_functions(void (*m)(void *,int,const char *,int,int), void (*r)(void *,void *,int,const char *,int,int), void (*f)(void *,int), void (*so)(long), long (*go)(void)) __attribute__((deprecated)); void CRYPTO_set_mem_info_functions( int (*push_info_fn)(const char *info, const char *file, int line), int (*pop_info_fn)(void), int (*remove_all_info_fn)(void)) __attribute__((deprecated)); void CRYPTO_get_mem_functions(void *(**m)(size_t),void *(**r)(void *, size_t), void (**f)(void *)) __attribute__((deprecated)); void CRYPTO_get_locked_mem_functions(void *(**m)(size_t), void (**f)(void *)) __attribute__((deprecated)); void CRYPTO_get_mem_ex_functions(void *(**m)(size_t,const char *,int), void *(**r)(void *, size_t,const char *,int), void (**f)(void *)) __attribute__((deprecated)); void CRYPTO_get_locked_mem_ex_functions(void *(**m)(size_t,const char *,int), void (**f)(void *)) __attribute__((deprecated)); void CRYPTO_get_mem_debug_functions(void (**m)(void *,int,const char *,int,int), void (**r)(void *,void *,int,const char *,int,int), void (**f)(void *,int), void (**so)(long), long (**go)(void)) __attribute__((deprecated)); void *CRYPTO_malloc_locked(int num, const char *file, int line) __attribute__((deprecated)); void CRYPTO_free_locked(void *) __attribute__((deprecated)); void *CRYPTO_malloc(int num, const char *file, int line) __attribute__((deprecated)); char *CRYPTO_strdup(const char *str, const char *file, int line) __attribute__((deprecated)); void CRYPTO_free(void *) __attribute__((deprecated)); void *CRYPTO_realloc(void *addr,int num, const char *file, int line) __attribute__((deprecated)); void *CRYPTO_realloc_clean(void *addr,int old_num,int num,const char *file, int line) __attribute__((deprecated)); void *CRYPTO_remalloc(void *addr,int num, const char *file, int line) __attribute__((deprecated)); void OPENSSL_cleanse(void *ptr, size_t len) __attribute__((deprecated)); void CRYPTO_set_mem_debug_options(long bits) __attribute__((deprecated)); long CRYPTO_get_mem_debug_options(void) __attribute__((deprecated)); int CRYPTO_push_info_(const char *info, const char *file, int line) __attribute__((deprecated)); int CRYPTO_pop_info(void) __attribute__((deprecated)); int CRYPTO_remove_all_info(void) __attribute__((deprecated)); # 505 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_malloc(void *addr,int num,const char *file,int line,int before_p) __attribute__((deprecated)); void CRYPTO_dbg_realloc(void *addr1,void *addr2,int num,const char *file,int line,int before_p) __attribute__((deprecated)); void CRYPTO_dbg_free(void *addr,int before_p) __attribute__((deprecated)); # 516 "/usr/include/openssl/crypto.h" 3 4 void CRYPTO_dbg_set_options(long bits) __attribute__((deprecated)); long CRYPTO_dbg_get_options(void) __attribute__((deprecated)); int CRYPTO_dbg_push_info(const char *info, const char *file, int line) __attribute__((deprecated)); int CRYPTO_dbg_pop_info(void) __attribute__((deprecated)); int CRYPTO_dbg_remove_all_info(void) __attribute__((deprecated)); void CRYPTO_mem_leaks_fp(FILE *) __attribute__((deprecated)); void CRYPTO_mem_leaks(struct bio_st *bio) __attribute__((deprecated)); typedef void *CRYPTO_MEM_LEAK_CB(unsigned long, const char *, int, int, void *); void CRYPTO_mem_leaks_cb(CRYPTO_MEM_LEAK_CB *cb) __attribute__((deprecated)); void OpenSSLDie(const char *file,int line,const char *assertion) __attribute__((deprecated)); unsigned long *OPENSSL_ia32cap_loc(void) __attribute__((deprecated)); int OPENSSL_isservice(void) __attribute__((deprecated)); # 594 "/usr/include/openssl/crypto.h" 3 4 void OPENSSL_init(void) __attribute__((deprecated)); int CRYPTO_memcmp(const void *a, const void *b, size_t len) __attribute__((deprecated)); void ERR_load_CRYPTO_strings(void) __attribute__((deprecated)); # 8 "/usr/include/openssl/comp.h" 2 3 4 typedef struct comp_ctx_st COMP_CTX; typedef struct comp_method_st { int type; const char *name; int (*init)(COMP_CTX *ctx) __attribute__((deprecated)); void (*finish)(COMP_CTX *ctx) __attribute__((deprecated)); int (*compress)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen) __attribute__((deprecated)); int (*expand)(COMP_CTX *ctx, unsigned char *out, unsigned int olen, unsigned char *in, unsigned int ilen) __attribute__((deprecated)); long (*ctrl)(void) __attribute__((deprecated)); long (*callback_ctrl)(void) __attribute__((deprecated)); } COMP_METHOD; struct comp_ctx_st { COMP_METHOD *meth; unsigned long compress_in; unsigned long compress_out; unsigned long expand_in; unsigned long expand_out; CRYPTO_EX_DATA ex_data; }; COMP_CTX *COMP_CTX_new(COMP_METHOD *meth) __attribute__((deprecated)); void COMP_CTX_free(COMP_CTX *ctx) __attribute__((deprecated)); int COMP_compress_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen) __attribute__((deprecated)); int COMP_expand_block(COMP_CTX *ctx, unsigned char *out, int olen, unsigned char *in, int ilen) __attribute__((deprecated)); COMP_METHOD *COMP_rle(void ) __attribute__((deprecated)); COMP_METHOD *COMP_zlib(void ) __attribute__((deprecated)); void COMP_zlib_cleanup(void) __attribute__((deprecated)); # 64 "/usr/include/openssl/comp.h" 3 4 void ERR_load_COMP_strings(void) __attribute__((deprecated)); # 179 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/bio.h" 1 3 4 # 64 "/usr/include/openssl/bio.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/bio.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdarg.h" 1 3 4 # 40 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdarg.h" 3 4 typedef __builtin_va_list __gnuc_va_list; # 98 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdarg.h" 3 4 typedef __gnuc_va_list va_list; # 70 "/usr/include/openssl/bio.h" 2 3 4 # 206 "/usr/include/openssl/bio.h" 3 4 typedef struct bio_st BIO; void BIO_set_flags(BIO *b, int flags) __attribute__((deprecated)); int BIO_test_flags(const BIO *b, int flags) __attribute__((deprecated)); void BIO_clear_flags(BIO *b, int flags) __attribute__((deprecated)); # 260 "/usr/include/openssl/bio.h" 3 4 long (*BIO_get_callback(const BIO *b)) (struct bio_st *,int,const char *,int, long,long) __attribute__((deprecated)); void BIO_set_callback(BIO *b, long (*callback)(struct bio_st *,int,const char *,int, long,long)) __attribute__((deprecated)); char *BIO_get_callback_arg(const BIO *b) __attribute__((deprecated)); void BIO_set_callback_arg(BIO *b, char *arg) __attribute__((deprecated)); const char * BIO_method_name(const BIO *b) __attribute__((deprecated)); int BIO_method_type(const BIO *b) __attribute__((deprecated)); typedef void bio_info_cb(struct bio_st *, int, const char *, int, long, long); typedef struct bio_method_st { int type; const char *name; int (*bwrite)(BIO *, const char *, int) __attribute__((deprecated)); int (*bread)(BIO *, char *, int) __attribute__((deprecated)); int (*bputs)(BIO *, const char *) __attribute__((deprecated)); int (*bgets)(BIO *, char *, int) __attribute__((deprecated)); long (*ctrl)(BIO *, int, long, void *) __attribute__((deprecated)); int (*create)(BIO *) __attribute__((deprecated)); int (*destroy)(BIO *) __attribute__((deprecated)); long (*callback_ctrl)(BIO *, int, bio_info_cb *) __attribute__((deprecated)); } BIO_METHOD; # 301 "/usr/include/openssl/bio.h" 3 4 struct bio_st { BIO_METHOD *method; long (*callback)(struct bio_st *,int,const char *,int, long,long) __attribute__((deprecated)); char *cb_arg; int init; int shutdown; int flags; int retry_reason; int num; void *ptr; struct bio_st *next_bio; struct bio_st *prev_bio; int references; unsigned long num_read; unsigned long num_write; CRYPTO_EX_DATA ex_data; }; typedef struct bio_f_buffer_ctx_struct { # 337 "/usr/include/openssl/bio.h" 3 4 int ibuf_size; int obuf_size; char *ibuf; int ibuf_len; int ibuf_off; char *obuf; int obuf_len; int obuf_off; } BIO_F_BUFFER_CTX; # 527 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_pending(BIO *b) __attribute__((deprecated)); size_t BIO_ctrl_wpending(BIO *b) __attribute__((deprecated)); # 546 "/usr/include/openssl/bio.h" 3 4 size_t BIO_ctrl_get_write_guarantee(BIO *b) __attribute__((deprecated)); size_t BIO_ctrl_get_read_request(BIO *b) __attribute__((deprecated)); int BIO_ctrl_reset_read_request(BIO *b) __attribute__((deprecated)); # 567 "/usr/include/openssl/bio.h" 3 4 int BIO_set_ex_data(BIO *bio,int idx,void *data) __attribute__((deprecated)); void *BIO_get_ex_data(BIO *bio,int idx) __attribute__((deprecated)); int BIO_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); unsigned long BIO_number_read(BIO *bio) __attribute__((deprecated)); unsigned long BIO_number_written(BIO *bio) __attribute__((deprecated)); # 583 "/usr/include/openssl/bio.h" 3 4 BIO_METHOD *BIO_s_file(void ) __attribute__((deprecated)); BIO *BIO_new_file(const char *filename, const char *mode) __attribute__((deprecated)); BIO *BIO_new_fp(FILE *stream, int close_flag) __attribute__((deprecated)); BIO * BIO_new(BIO_METHOD *type) __attribute__((deprecated)); int BIO_set(BIO *a,BIO_METHOD *type) __attribute__((deprecated)); int BIO_free(BIO *a) __attribute__((deprecated)); void BIO_vfree(BIO *a) __attribute__((deprecated)); int BIO_read(BIO *b, void *data, int len) __attribute__((deprecated)); int BIO_gets(BIO *bp,char *buf, int size) __attribute__((deprecated)); int BIO_write(BIO *b, const void *data, int len) __attribute__((deprecated)); int BIO_puts(BIO *bp,const char *buf) __attribute__((deprecated)); int BIO_indent(BIO *b,int indent,int max) __attribute__((deprecated)); long BIO_ctrl(BIO *bp,int cmd,long larg,void *parg) __attribute__((deprecated)); long BIO_callback_ctrl(BIO *b, int cmd, void (*fp)(struct bio_st *, int, const char *, int, long, long)) __attribute__((deprecated)); char * BIO_ptr_ctrl(BIO *bp,int cmd,long larg) __attribute__((deprecated)); long BIO_int_ctrl(BIO *bp,int cmd,long larg,int iarg) __attribute__((deprecated)); BIO * BIO_push(BIO *b,BIO *append) __attribute__((deprecated)); BIO * BIO_pop(BIO *b) __attribute__((deprecated)); void BIO_free_all(BIO *a) __attribute__((deprecated)); BIO * BIO_find_type(BIO *b,int bio_type) __attribute__((deprecated)); BIO * BIO_next(BIO *b) __attribute__((deprecated)); BIO * BIO_get_retry_BIO(BIO *bio, int *reason) __attribute__((deprecated)); int BIO_get_retry_reason(BIO *bio) __attribute__((deprecated)); BIO * BIO_dup_chain(BIO *in) __attribute__((deprecated)); int BIO_nread0(BIO *bio, char **buf) __attribute__((deprecated)); int BIO_nread(BIO *bio, char **buf, int num) __attribute__((deprecated)); int BIO_nwrite0(BIO *bio, char **buf) __attribute__((deprecated)); int BIO_nwrite(BIO *bio, char **buf, int num) __attribute__((deprecated)); long BIO_debug_callback(BIO *bio,int cmd,const char *argp,int argi, long argl,long ret) __attribute__((deprecated)); BIO_METHOD *BIO_s_mem(void) __attribute__((deprecated)); BIO *BIO_new_mem_buf(void *buf, int len) __attribute__((deprecated)); BIO_METHOD *BIO_s_socket(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_connect(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_accept(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_fd(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_log(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_bio(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_null(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_null(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_buffer(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_nbio_test(void) __attribute__((deprecated)); BIO_METHOD *BIO_s_datagram(void) __attribute__((deprecated)); int BIO_sock_should_retry(int i) __attribute__((deprecated)); int BIO_sock_non_fatal_error(int error) __attribute__((deprecated)); int BIO_dgram_non_fatal_error(int error) __attribute__((deprecated)); int BIO_fd_should_retry(int i) __attribute__((deprecated)); int BIO_fd_non_fatal_error(int error) __attribute__((deprecated)); int BIO_dump_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len) __attribute__((deprecated)); int BIO_dump_indent_cb(int (*cb)(const void *data, size_t len, void *u), void *u, const char *s, int len, int indent) __attribute__((deprecated)); int BIO_dump(BIO *b,const char *bytes,int len) __attribute__((deprecated)); int BIO_dump_indent(BIO *b,const char *bytes,int len,int indent) __attribute__((deprecated)); int BIO_dump_fp(FILE *fp, const char *s, int len) __attribute__((deprecated)); int BIO_dump_indent_fp(FILE *fp, const char *s, int len, int indent) __attribute__((deprecated)); struct hostent *BIO_gethostbyname(const char *name) __attribute__((deprecated)); # 674 "/usr/include/openssl/bio.h" 3 4 int BIO_sock_error(int sock) __attribute__((deprecated)); int BIO_socket_ioctl(int fd, long type, void *arg) __attribute__((deprecated)); int BIO_socket_nbio(int fd,int mode) __attribute__((deprecated)); int BIO_get_port(const char *str, unsigned short *port_ptr) __attribute__((deprecated)); int BIO_get_host_ip(const char *str, unsigned char *ip) __attribute__((deprecated)); int BIO_get_accept_socket(char *host_port,int mode) __attribute__((deprecated)); int BIO_accept(int sock,char **ip_port) __attribute__((deprecated)); int BIO_sock_init(void ) __attribute__((deprecated)); void BIO_sock_cleanup(void) __attribute__((deprecated)); int BIO_set_tcp_ndelay(int sock,int turn_on) __attribute__((deprecated)); BIO *BIO_new_socket(int sock, int close_flag) __attribute__((deprecated)); BIO *BIO_new_dgram(int fd, int close_flag) __attribute__((deprecated)); BIO *BIO_new_fd(int fd, int close_flag) __attribute__((deprecated)); BIO *BIO_new_connect(char *host_port) __attribute__((deprecated)); BIO *BIO_new_accept(char *host_port) __attribute__((deprecated)); int BIO_new_bio_pair(BIO **bio1, size_t writebuf1, BIO **bio2, size_t writebuf2) __attribute__((deprecated)); void BIO_copy_next_retry(BIO *b) __attribute__((deprecated)); # 707 "/usr/include/openssl/bio.h" 3 4 int BIO_printf(BIO *bio, const char *format, ...) __attribute__((__format__(__printf__,2,3))) __attribute__((deprecated)); int BIO_vprintf(BIO *bio, const char *format, va_list args) __attribute__((__format__(__printf__,2,0))) __attribute__((deprecated)); int BIO_snprintf(char *buf, size_t n, const char *format, ...) __attribute__((__format__(__printf__,3,4))) __attribute__((deprecated)); int BIO_vsnprintf(char *buf, size_t n, const char *format, va_list args) __attribute__((__format__(__printf__,3,0))) __attribute__((deprecated)); void ERR_load_BIO_strings(void) __attribute__((deprecated)); # 182 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/x509.h" 1 3 4 # 69 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 70 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 71 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/buffer.h" 1 3 4 # 70 "/usr/include/openssl/buffer.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 1 3 4 # 149 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef long int ptrdiff_t; # 426 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 3 4 typedef struct { long long __max_align_ll __attribute__((__aligned__(__alignof__(long long)))); long double __max_align_ld __attribute__((__aligned__(__alignof__(long double)))); } max_align_t; # 71 "/usr/include/openssl/buffer.h" 2 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 84 "/usr/include/sys/types.h" 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 161 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 162 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 165 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 168 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 180 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 181 "/usr/include/sys/types.h" 2 3 4 typedef __int32_t fd_mask; # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 194 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 195 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 196 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 197 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 198 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 201 "/usr/include/sys/types.h" 2 3 4 # 212 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 74 "/usr/include/openssl/buffer.h" 2 3 4 struct buf_mem_st { int length; char *data; int max; }; BUF_MEM *BUF_MEM_new(void) __attribute__((deprecated)); void BUF_MEM_free(BUF_MEM *a) __attribute__((deprecated)); int BUF_MEM_grow(BUF_MEM *str, int len) __attribute__((deprecated)); int BUF_MEM_grow_clean(BUF_MEM *str, int len) __attribute__((deprecated)); char * BUF_strdup(const char *str) __attribute__((deprecated)); char * BUF_strndup(const char *str, size_t siz) __attribute__((deprecated)); void * BUF_memdup(const void *data, size_t siz) __attribute__((deprecated)); size_t BUF_strlcpy(char *dst,const char *src,size_t siz) __attribute__((deprecated)); size_t BUF_strlcat(char *dst,const char *src,size_t siz) __attribute__((deprecated)); void ERR_load_BUF_strings(void) __attribute__((deprecated)); # 73 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/evp.h" 1 3 4 # 68 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 69 "/usr/include/openssl/evp.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 75 "/usr/include/openssl/evp.h" 2 3 4 # 100 "/usr/include/openssl/evp.h" 3 4 # 1 "/usr/include/openssl/objects.h" 1 3 4 # 67 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/obj_mac.h" 1 3 4 # 68 "/usr/include/openssl/objects.h" 2 3 4 # 962 "/usr/include/openssl/objects.h" 3 4 # 1 "/usr/include/openssl/asn1.h" 1 3 4 # 64 "/usr/include/openssl/asn1.h" 3 4 # 1 "/usr/include/time.h" 1 3 4 # 71 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 72 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 65 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 66 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 73 "/usr/include/openssl/asn1.h" 2 3 4 # 1 "/usr/include/openssl/bn.h" 1 3 4 # 77 "/usr/include/openssl/bn.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 78 "/usr/include/openssl/bn.h" 2 3 4 # 290 "/usr/include/openssl/bn.h" 3 4 struct bignum_st { unsigned long *d; int top; int dmax; int neg; int flags; }; struct bn_mont_ctx_st { int ri; BIGNUM RR; BIGNUM N; BIGNUM Ni; unsigned long n0; int flags; }; struct bn_recp_ctx_st { BIGNUM N; BIGNUM Nr; int num_bits; int shift; int flags; }; struct bn_gencb_st { unsigned int ver; void *arg; union { void (*cb_1)(int, int, void *) __attribute__((deprecated)); int (*cb_2)(int, int, BN_GENCB *) __attribute__((deprecated)); } cb; }; int BN_GENCB_call(BN_GENCB *cb, int a, int b) __attribute__((deprecated)); # 401 "/usr/include/openssl/bn.h" 3 4 const BIGNUM *BN_value_one(void) __attribute__((deprecated)); char * BN_options(void) __attribute__((deprecated)); BN_CTX *BN_CTX_new(void) __attribute__((deprecated)); void BN_CTX_init(BN_CTX *c) __attribute__((deprecated)); void BN_CTX_free(BN_CTX *c) __attribute__((deprecated)); void BN_CTX_start(BN_CTX *ctx) __attribute__((deprecated)); BIGNUM *BN_CTX_get(BN_CTX *ctx) __attribute__((deprecated)); void BN_CTX_end(BN_CTX *ctx) __attribute__((deprecated)); int BN_rand(BIGNUM *rnd, int bits, int top,int bottom) __attribute__((deprecated)); int BN_pseudo_rand(BIGNUM *rnd, int bits, int top,int bottom) __attribute__((deprecated)); int BN_rand_range(BIGNUM *rnd, const BIGNUM *range) __attribute__((deprecated)); int BN_pseudo_rand_range(BIGNUM *rnd, const BIGNUM *range) __attribute__((deprecated)); int BN_num_bits(const BIGNUM *a) __attribute__((deprecated)); int BN_num_bits_word(unsigned long) __attribute__((deprecated)); BIGNUM *BN_new(void) __attribute__((deprecated)); void BN_init(BIGNUM *) __attribute__((deprecated)); void BN_clear_free(BIGNUM *a) __attribute__((deprecated)); BIGNUM *BN_copy(BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); void BN_swap(BIGNUM *a, BIGNUM *b) __attribute__((deprecated)); BIGNUM *BN_bin2bn(const unsigned char *s,int len,BIGNUM *ret) __attribute__((deprecated)); int BN_bn2bin(const BIGNUM *a, unsigned char *to) __attribute__((deprecated)); BIGNUM *BN_mpi2bn(const unsigned char *s,int len,BIGNUM *ret) __attribute__((deprecated)); int BN_bn2mpi(const BIGNUM *a, unsigned char *to) __attribute__((deprecated)); int BN_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_usub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_uadd(BIGNUM *r, const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, BN_CTX *ctx) __attribute__((deprecated)); int BN_sqr(BIGNUM *r, const BIGNUM *a,BN_CTX *ctx) __attribute__((deprecated)); void BN_set_negative(BIGNUM *b, int n) __attribute__((deprecated)); int BN_div(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx) __attribute__((deprecated)); int BN_nnmod(BIGNUM *r, const BIGNUM *m, const BIGNUM *d, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_add_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m) __attribute__((deprecated)); int BN_mod_sub(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_sub_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m) __attribute__((deprecated)); int BN_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_lshift1(BIGNUM *r, const BIGNUM *a, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_lshift1_quick(BIGNUM *r, const BIGNUM *a, const BIGNUM *m) __attribute__((deprecated)); int BN_mod_lshift(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_lshift_quick(BIGNUM *r, const BIGNUM *a, int n, const BIGNUM *m) __attribute__((deprecated)); unsigned long BN_mod_word(const BIGNUM *a, unsigned long w) __attribute__((deprecated)); unsigned long BN_div_word(BIGNUM *a, unsigned long w) __attribute__((deprecated)); int BN_mul_word(BIGNUM *a, unsigned long w) __attribute__((deprecated)); int BN_add_word(BIGNUM *a, unsigned long w) __attribute__((deprecated)); int BN_sub_word(BIGNUM *a, unsigned long w) __attribute__((deprecated)); int BN_set_word(BIGNUM *a, unsigned long w) __attribute__((deprecated)); unsigned long BN_get_word(const BIGNUM *a) __attribute__((deprecated)); int BN_cmp(const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); void BN_free(BIGNUM *a) __attribute__((deprecated)); int BN_is_bit_set(const BIGNUM *a, int n) __attribute__((deprecated)); int BN_lshift(BIGNUM *r, const BIGNUM *a, int n) __attribute__((deprecated)); int BN_lshift1(BIGNUM *r, const BIGNUM *a) __attribute__((deprecated)); int BN_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p,BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_exp_mont(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int BN_mod_exp_mont_consttime(BIGNUM *rr, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont) __attribute__((deprecated)); int BN_mod_exp_mont_word(BIGNUM *r, unsigned long a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int BN_mod_exp2_mont(BIGNUM *r, const BIGNUM *a1, const BIGNUM *p1, const BIGNUM *a2, const BIGNUM *p2,const BIGNUM *m, BN_CTX *ctx,BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int BN_mod_exp_simple(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m,BN_CTX *ctx) __attribute__((deprecated)); int BN_mask_bits(BIGNUM *a,int n) __attribute__((deprecated)); int BN_print_fp(FILE *fp, const BIGNUM *a) __attribute__((deprecated)); int BN_print(BIO *fp, const BIGNUM *a) __attribute__((deprecated)); int BN_reciprocal(BIGNUM *r, const BIGNUM *m, int len, BN_CTX *ctx) __attribute__((deprecated)); int BN_rshift(BIGNUM *r, const BIGNUM *a, int n) __attribute__((deprecated)); int BN_rshift1(BIGNUM *r, const BIGNUM *a) __attribute__((deprecated)); void BN_clear(BIGNUM *a) __attribute__((deprecated)); BIGNUM *BN_dup(const BIGNUM *a) __attribute__((deprecated)); int BN_ucmp(const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_set_bit(BIGNUM *a, int n) __attribute__((deprecated)); int BN_clear_bit(BIGNUM *a, int n) __attribute__((deprecated)); char * BN_bn2hex(const BIGNUM *a) __attribute__((deprecated)); char * BN_bn2dec(const BIGNUM *a) __attribute__((deprecated)); int BN_hex2bn(BIGNUM **a, const char *str) __attribute__((deprecated)); int BN_dec2bn(BIGNUM **a, const char *str) __attribute__((deprecated)); int BN_gcd(BIGNUM *r,const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx) __attribute__((deprecated)); int BN_kronecker(const BIGNUM *a,const BIGNUM *b,BN_CTX *ctx) __attribute__((deprecated)); BIGNUM *BN_mod_inverse(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx) __attribute__((deprecated)); BIGNUM *BN_mod_sqrt(BIGNUM *ret, const BIGNUM *a, const BIGNUM *n,BN_CTX *ctx) __attribute__((deprecated)); void BN_consttime_swap(unsigned long swap, BIGNUM *a, BIGNUM *b, int nwords) __attribute__((deprecated)); BIGNUM *BN_generate_prime(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, void (*callback)(int,int,void *),void *cb_arg) __attribute__((deprecated)); int BN_is_prime(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *), BN_CTX *ctx,void *cb_arg) __attribute__((deprecated)); int BN_is_prime_fasttest(const BIGNUM *p,int nchecks, void (*callback)(int,int,void *),BN_CTX *ctx,void *cb_arg, int do_trial_division) __attribute__((deprecated)); int BN_generate_prime_ex(BIGNUM *ret,int bits,int safe, const BIGNUM *add, const BIGNUM *rem, BN_GENCB *cb) __attribute__((deprecated)); int BN_is_prime_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, BN_GENCB *cb) __attribute__((deprecated)); int BN_is_prime_fasttest_ex(const BIGNUM *p,int nchecks, BN_CTX *ctx, int do_trial_division, BN_GENCB *cb) __attribute__((deprecated)); int BN_X931_generate_Xpq(BIGNUM *Xp, BIGNUM *Xq, int nbits, BN_CTX *ctx) __attribute__((deprecated)); int BN_X931_derive_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, const BIGNUM *Xp, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb) __attribute__((deprecated)); int BN_X931_generate_prime_ex(BIGNUM *p, BIGNUM *p1, BIGNUM *p2, BIGNUM *Xp1, BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *e, BN_CTX *ctx, BN_GENCB *cb) __attribute__((deprecated)); BN_MONT_CTX *BN_MONT_CTX_new(void ) __attribute__((deprecated)); void BN_MONT_CTX_init(BN_MONT_CTX *ctx) __attribute__((deprecated)); int BN_mod_mul_montgomery(BIGNUM *r,const BIGNUM *a,const BIGNUM *b, BN_MONT_CTX *mont, BN_CTX *ctx) __attribute__((deprecated)); int BN_from_montgomery(BIGNUM *r,const BIGNUM *a, BN_MONT_CTX *mont, BN_CTX *ctx) __attribute__((deprecated)); void BN_MONT_CTX_free(BN_MONT_CTX *mont) __attribute__((deprecated)); int BN_MONT_CTX_set(BN_MONT_CTX *mont,const BIGNUM *mod,BN_CTX *ctx) __attribute__((deprecated)); BN_MONT_CTX *BN_MONT_CTX_copy(BN_MONT_CTX *to,BN_MONT_CTX *from) __attribute__((deprecated)); BN_MONT_CTX *BN_MONT_CTX_set_locked(BN_MONT_CTX **pmont, int lock, const BIGNUM *mod, BN_CTX *ctx) __attribute__((deprecated)); BN_BLINDING *BN_BLINDING_new(const BIGNUM *A, const BIGNUM *Ai, BIGNUM *mod) __attribute__((deprecated)); void BN_BLINDING_free(BN_BLINDING *b) __attribute__((deprecated)); int BN_BLINDING_update(BN_BLINDING *b,BN_CTX *ctx) __attribute__((deprecated)); int BN_BLINDING_convert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx) __attribute__((deprecated)); int BN_BLINDING_invert(BIGNUM *n, BN_BLINDING *b, BN_CTX *ctx) __attribute__((deprecated)); int BN_BLINDING_convert_ex(BIGNUM *n, BIGNUM *r, BN_BLINDING *b, BN_CTX *) __attribute__((deprecated)); int BN_BLINDING_invert_ex(BIGNUM *n, const BIGNUM *r, BN_BLINDING *b, BN_CTX *) __attribute__((deprecated)); unsigned long BN_BLINDING_get_thread_id(const BN_BLINDING *) __attribute__((deprecated)); void BN_BLINDING_set_thread_id(BN_BLINDING *, unsigned long) __attribute__((deprecated)); unsigned long BN_BLINDING_get_flags(const BN_BLINDING *) __attribute__((deprecated)); void BN_BLINDING_set_flags(BN_BLINDING *, unsigned long) __attribute__((deprecated)); BN_BLINDING *BN_BLINDING_create_param(BN_BLINDING *b, const BIGNUM *e, BIGNUM *m, BN_CTX *ctx, int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx), BN_MONT_CTX *m_ctx) __attribute__((deprecated)); void BN_set_params(int mul,int high,int low,int mont) __attribute__((deprecated)); int BN_get_params(int which) __attribute__((deprecated)); void BN_RECP_CTX_init(BN_RECP_CTX *recp) __attribute__((deprecated)); BN_RECP_CTX *BN_RECP_CTX_new(void) __attribute__((deprecated)); void BN_RECP_CTX_free(BN_RECP_CTX *recp) __attribute__((deprecated)); int BN_RECP_CTX_set(BN_RECP_CTX *recp,const BIGNUM *rdiv,BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_mul_reciprocal(BIGNUM *r, const BIGNUM *x, const BIGNUM *y, BN_RECP_CTX *recp,BN_CTX *ctx) __attribute__((deprecated)); int BN_mod_exp_recp(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx) __attribute__((deprecated)); int BN_div_recp(BIGNUM *dv, BIGNUM *rem, const BIGNUM *m, BN_RECP_CTX *recp, BN_CTX *ctx) __attribute__((deprecated)); # 609 "/usr/include/openssl/bn.h" 3 4 int BN_GF2m_add(BIGNUM *r, const BIGNUM *a, const BIGNUM *b) __attribute__((deprecated)); int BN_GF2m_mod(BIGNUM *r, const BIGNUM *a, const BIGNUM *p) __attribute__((deprecated)); int BN_GF2m_mod_mul(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_sqr(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_inv(BIGNUM *r, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_div(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_exp(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_sqrt(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_solve_quad(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_arr(BIGNUM *r, const BIGNUM *a, const unsigned int p[]) __attribute__((deprecated)); int BN_GF2m_mod_mul_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_sqr_arr(BIGNUM *r, const BIGNUM *a, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_inv_arr(BIGNUM *r, const BIGNUM *b, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_div_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_exp_arr(BIGNUM *r, const BIGNUM *a, const BIGNUM *b, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_sqrt_arr(BIGNUM *r, const BIGNUM *a, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_mod_solve_quad_arr(BIGNUM *r, const BIGNUM *a, const unsigned int p[], BN_CTX *ctx) __attribute__((deprecated)); int BN_GF2m_poly2arr(const BIGNUM *a, unsigned int p[], int max) __attribute__((deprecated)); int BN_GF2m_arr2poly(const unsigned int p[], BIGNUM *a) __attribute__((deprecated)); int BN_nist_mod_192(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_nist_mod_224(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_nist_mod_256(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_nist_mod_384(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); int BN_nist_mod_521(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, BN_CTX *ctx) __attribute__((deprecated)); const BIGNUM *BN_get0_nist_prime_192(void) __attribute__((deprecated)); const BIGNUM *BN_get0_nist_prime_224(void) __attribute__((deprecated)); const BIGNUM *BN_get0_nist_prime_256(void) __attribute__((deprecated)); const BIGNUM *BN_get0_nist_prime_384(void) __attribute__((deprecated)); const BIGNUM *BN_get0_nist_prime_521(void) __attribute__((deprecated)); BIGNUM *bn_expand2(BIGNUM *a, int words) __attribute__((deprecated)); BIGNUM *bn_dup_expand(const BIGNUM *a, int words) __attribute__((deprecated)); # 775 "/usr/include/openssl/bn.h" 3 4 unsigned long bn_mul_add_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w) __attribute__((deprecated)); unsigned long bn_mul_words(unsigned long *rp, const unsigned long *ap, int num, unsigned long w) __attribute__((deprecated)); void bn_sqr_words(unsigned long *rp, const unsigned long *ap, int num) __attribute__((deprecated)); unsigned long bn_div_words(unsigned long h, unsigned long l, unsigned long d) __attribute__((deprecated)); unsigned long bn_add_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num) __attribute__((deprecated)); unsigned long bn_sub_words(unsigned long *rp, const unsigned long *ap, const unsigned long *bp,int num) __attribute__((deprecated)); BIGNUM *get_rfc2409_prime_768(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc2409_prime_1024(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_1536(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_2048(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_3072(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_4096(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_6144(BIGNUM *bn) __attribute__((deprecated)); BIGNUM *get_rfc3526_prime_8192(BIGNUM *bn) __attribute__((deprecated)); int BN_bntest_rand(BIGNUM *rnd, int bits, int top,int bottom) __attribute__((deprecated)); void ERR_load_BN_strings(void) __attribute__((deprecated)); # 77 "/usr/include/openssl/asn1.h" 2 3 4 # 167 "/usr/include/openssl/asn1.h" 3 4 struct X509_algor_st; # 177 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_ctx_st { unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; unsigned char *max; unsigned char *q; unsigned char **pp; int line; } ASN1_CTX; typedef struct asn1_const_ctx_st { const unsigned char *p; int eos; int error; int inf; int tag; int xclass; long slen; const unsigned char *max; const unsigned char *q; const unsigned char **pp; int line; } ASN1_const_CTX; typedef struct asn1_object_st { const char *sn,*ln; int nid; int length; unsigned char *data; int flags; } ASN1_OBJECT; # 236 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_string_st { int length; int type; unsigned char *data; long flags; } ASN1_STRING; typedef struct ASN1_ENCODING_st { unsigned char *enc; long len; int modified; } ASN1_ENCODING; # 269 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_string_table_st { int nid; long minsize; long maxsize; unsigned long mask; unsigned long flags; } ASN1_STRING_TABLE; # 293 "/usr/include/openssl/asn1.h" 3 4 typedef struct ASN1_TEMPLATE_st ASN1_TEMPLATE; typedef struct ASN1_ITEM_st ASN1_ITEM; typedef struct ASN1_TLC_st ASN1_TLC; typedef struct ASN1_VALUE_st ASN1_VALUE; # 356 "/usr/include/openssl/asn1.h" 3 4 typedef void *d2i_of_void(void **,const unsigned char **,long); typedef int i2d_of_void(void *,unsigned char **); # 396 "/usr/include/openssl/asn1.h" 3 4 typedef const ASN1_ITEM ASN1_ITEM_EXP; # 510 "/usr/include/openssl/asn1.h" 3 4 typedef struct asn1_type_st { int type; union { char *ptr; ASN1_BOOLEAN boolean; ASN1_STRING * asn1_string; ASN1_OBJECT * object; ASN1_INTEGER * integer; ASN1_ENUMERATED * enumerated; ASN1_BIT_STRING * bit_string; ASN1_OCTET_STRING * octet_string; ASN1_PRINTABLESTRING * printablestring; ASN1_T61STRING * t61string; ASN1_IA5STRING * ia5string; ASN1_GENERALSTRING * generalstring; ASN1_BMPSTRING * bmpstring; ASN1_UNIVERSALSTRING * universalstring; ASN1_UTCTIME * utctime; ASN1_GENERALIZEDTIME * generalizedtime; ASN1_VISIBLESTRING * visiblestring; ASN1_UTF8STRING * utf8string; ASN1_STRING * set; ASN1_STRING * sequence; ASN1_VALUE * asn1_value; } value; } ASN1_TYPE; typedef struct asn1_method_st { i2d_of_void *i2d; d2i_of_void *d2i; void *(*create)(void) __attribute__((deprecated)); void (*destroy)(void *) __attribute__((deprecated)); } ASN1_METHOD; typedef struct asn1_header_st { ASN1_OCTET_STRING *header; void *data; ASN1_METHOD *meth; } ASN1_HEADER; typedef struct BIT_STRING_BITNAME_st { int bitnum; const char *lname; const char *sname; } BIT_STRING_BITNAME; # 769 "/usr/include/openssl/asn1.h" 3 4 ASN1_TYPE *ASN1_TYPE_new(void); void ASN1_TYPE_free(ASN1_TYPE *a); ASN1_TYPE *d2i_ASN1_TYPE(ASN1_TYPE **a, const unsigned char **in, long len); int i2d_ASN1_TYPE(ASN1_TYPE *a, unsigned char **out); extern const ASN1_ITEM ASN1_ANY_it; int ASN1_TYPE_get(ASN1_TYPE *a) __attribute__((deprecated)); void ASN1_TYPE_set(ASN1_TYPE *a, int type, void *value) __attribute__((deprecated)); int ASN1_TYPE_set1(ASN1_TYPE *a, int type, const void *value) __attribute__((deprecated)); int ASN1_TYPE_cmp(const ASN1_TYPE *a, const ASN1_TYPE *b) __attribute__((deprecated)); ASN1_OBJECT * ASN1_OBJECT_new(void ) __attribute__((deprecated)); void ASN1_OBJECT_free(ASN1_OBJECT *a) __attribute__((deprecated)); int i2d_ASN1_OBJECT(ASN1_OBJECT *a,unsigned char **pp) __attribute__((deprecated)); ASN1_OBJECT * c2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length) __attribute__((deprecated)); ASN1_OBJECT * d2i_ASN1_OBJECT(ASN1_OBJECT **a,const unsigned char **pp, long length) __attribute__((deprecated)); extern const ASN1_ITEM ASN1_OBJECT_it; ASN1_STRING * ASN1_STRING_new(void) __attribute__((deprecated)); void ASN1_STRING_free(ASN1_STRING *a) __attribute__((deprecated)); ASN1_STRING * ASN1_STRING_dup(ASN1_STRING *a) __attribute__((deprecated)); ASN1_STRING * ASN1_STRING_type_new(int type ) __attribute__((deprecated)); int ASN1_STRING_cmp(ASN1_STRING *a, ASN1_STRING *b) __attribute__((deprecated)); int ASN1_STRING_set(ASN1_STRING *str, const void *data, int len) __attribute__((deprecated)); void ASN1_STRING_set0(ASN1_STRING *str, void *data, int len) __attribute__((deprecated)); int ASN1_STRING_length(ASN1_STRING *x) __attribute__((deprecated)); void ASN1_STRING_length_set(ASN1_STRING *x, int n) __attribute__((deprecated)); int ASN1_STRING_type(ASN1_STRING *x) __attribute__((deprecated)); unsigned char * ASN1_STRING_data(ASN1_STRING *x) __attribute__((deprecated)); ASN1_BIT_STRING *ASN1_BIT_STRING_new(void); void ASN1_BIT_STRING_free(ASN1_BIT_STRING *a); ASN1_BIT_STRING *d2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a, const unsigned char **in, long len); int i2d_ASN1_BIT_STRING(ASN1_BIT_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BIT_STRING_it; int i2c_ASN1_BIT_STRING(ASN1_BIT_STRING *a,unsigned char **pp) __attribute__((deprecated)); ASN1_BIT_STRING *c2i_ASN1_BIT_STRING(ASN1_BIT_STRING **a,const unsigned char **pp, long length) __attribute__((deprecated)); int ASN1_BIT_STRING_set(ASN1_BIT_STRING *a, unsigned char *d, int length ) __attribute__((deprecated)); int ASN1_BIT_STRING_set_bit(ASN1_BIT_STRING *a, int n, int value) __attribute__((deprecated)); int ASN1_BIT_STRING_get_bit(ASN1_BIT_STRING *a, int n) __attribute__((deprecated)); int ASN1_BIT_STRING_name_print(BIO *out, ASN1_BIT_STRING *bs, BIT_STRING_BITNAME *tbl, int indent) __attribute__((deprecated)); int ASN1_BIT_STRING_num_asc(char *name, BIT_STRING_BITNAME *tbl) __attribute__((deprecated)); int ASN1_BIT_STRING_set_asc(ASN1_BIT_STRING *bs, char *name, int value, BIT_STRING_BITNAME *tbl) __attribute__((deprecated)); int i2d_ASN1_BOOLEAN(int a,unsigned char **pp) __attribute__((deprecated)); int d2i_ASN1_BOOLEAN(int *a,const unsigned char **pp,long length) __attribute__((deprecated)); ASN1_INTEGER *ASN1_INTEGER_new(void); void ASN1_INTEGER_free(ASN1_INTEGER *a); ASN1_INTEGER *d2i_ASN1_INTEGER(ASN1_INTEGER **a, const unsigned char **in, long len); int i2d_ASN1_INTEGER(ASN1_INTEGER *a, unsigned char **out); extern const ASN1_ITEM ASN1_INTEGER_it; int i2c_ASN1_INTEGER(ASN1_INTEGER *a,unsigned char **pp) __attribute__((deprecated)); ASN1_INTEGER *c2i_ASN1_INTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length) __attribute__((deprecated)); ASN1_INTEGER *d2i_ASN1_UINTEGER(ASN1_INTEGER **a,const unsigned char **pp, long length) __attribute__((deprecated)); ASN1_INTEGER * ASN1_INTEGER_dup(ASN1_INTEGER *x) __attribute__((deprecated)); int ASN1_INTEGER_cmp(ASN1_INTEGER *x, ASN1_INTEGER *y) __attribute__((deprecated)); ASN1_ENUMERATED *ASN1_ENUMERATED_new(void); void ASN1_ENUMERATED_free(ASN1_ENUMERATED *a); ASN1_ENUMERATED *d2i_ASN1_ENUMERATED(ASN1_ENUMERATED **a, const unsigned char **in, long len); int i2d_ASN1_ENUMERATED(ASN1_ENUMERATED *a, unsigned char **out); extern const ASN1_ITEM ASN1_ENUMERATED_it; int ASN1_UTCTIME_check(ASN1_UTCTIME *a) __attribute__((deprecated)); ASN1_UTCTIME *ASN1_UTCTIME_set(ASN1_UTCTIME *s,time_t t) __attribute__((deprecated)); int ASN1_UTCTIME_set_string(ASN1_UTCTIME *s, const char *str) __attribute__((deprecated)); int ASN1_UTCTIME_cmp_time_t(const ASN1_UTCTIME *s, time_t t) __attribute__((deprecated)); int ASN1_GENERALIZEDTIME_check(ASN1_GENERALIZEDTIME *a) __attribute__((deprecated)); ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_set(ASN1_GENERALIZEDTIME *s,time_t t) __attribute__((deprecated)); int ASN1_GENERALIZEDTIME_set_string(ASN1_GENERALIZEDTIME *s, const char *str) __attribute__((deprecated)); ASN1_OCTET_STRING *ASN1_OCTET_STRING_new(void); void ASN1_OCTET_STRING_free(ASN1_OCTET_STRING *a); ASN1_OCTET_STRING *d2i_ASN1_OCTET_STRING(ASN1_OCTET_STRING **a, const unsigned char **in, long len); int i2d_ASN1_OCTET_STRING(ASN1_OCTET_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_OCTET_STRING_it; ASN1_OCTET_STRING * ASN1_OCTET_STRING_dup(ASN1_OCTET_STRING *a) __attribute__((deprecated)); int ASN1_OCTET_STRING_cmp(ASN1_OCTET_STRING *a, ASN1_OCTET_STRING *b) __attribute__((deprecated)); int ASN1_OCTET_STRING_set(ASN1_OCTET_STRING *str, const unsigned char *data, int len) __attribute__((deprecated)); ASN1_VISIBLESTRING *ASN1_VISIBLESTRING_new(void); void ASN1_VISIBLESTRING_free(ASN1_VISIBLESTRING *a); ASN1_VISIBLESTRING *d2i_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_VISIBLESTRING(ASN1_VISIBLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_VISIBLESTRING_it; ASN1_UNIVERSALSTRING *ASN1_UNIVERSALSTRING_new(void); void ASN1_UNIVERSALSTRING_free(ASN1_UNIVERSALSTRING *a); ASN1_UNIVERSALSTRING *d2i_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_UNIVERSALSTRING(ASN1_UNIVERSALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UNIVERSALSTRING_it; ASN1_UTF8STRING *ASN1_UTF8STRING_new(void); void ASN1_UTF8STRING_free(ASN1_UTF8STRING *a); ASN1_UTF8STRING *d2i_ASN1_UTF8STRING(ASN1_UTF8STRING **a, const unsigned char **in, long len); int i2d_ASN1_UTF8STRING(ASN1_UTF8STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTF8STRING_it; ASN1_NULL *ASN1_NULL_new(void); void ASN1_NULL_free(ASN1_NULL *a); ASN1_NULL *d2i_ASN1_NULL(ASN1_NULL **a, const unsigned char **in, long len); int i2d_ASN1_NULL(ASN1_NULL *a, unsigned char **out); extern const ASN1_ITEM ASN1_NULL_it; ASN1_BMPSTRING *ASN1_BMPSTRING_new(void); void ASN1_BMPSTRING_free(ASN1_BMPSTRING *a); ASN1_BMPSTRING *d2i_ASN1_BMPSTRING(ASN1_BMPSTRING **a, const unsigned char **in, long len); int i2d_ASN1_BMPSTRING(ASN1_BMPSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_BMPSTRING_it; int UTF8_getc(const unsigned char *str, int len, unsigned long *val) __attribute__((deprecated)); int UTF8_putc(unsigned char *str, int len, unsigned long value) __attribute__((deprecated)); ASN1_STRING *ASN1_PRINTABLE_new(void); void ASN1_PRINTABLE_free(ASN1_STRING *a); ASN1_STRING *d2i_ASN1_PRINTABLE(ASN1_STRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLE(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLE_it; ASN1_STRING *DIRECTORYSTRING_new(void); void DIRECTORYSTRING_free(ASN1_STRING *a); ASN1_STRING *d2i_DIRECTORYSTRING(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DIRECTORYSTRING(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DIRECTORYSTRING_it; ASN1_STRING *DISPLAYTEXT_new(void); void DISPLAYTEXT_free(ASN1_STRING *a); ASN1_STRING *d2i_DISPLAYTEXT(ASN1_STRING **a, const unsigned char **in, long len); int i2d_DISPLAYTEXT(ASN1_STRING *a, unsigned char **out); extern const ASN1_ITEM DISPLAYTEXT_it; ASN1_PRINTABLESTRING *ASN1_PRINTABLESTRING_new(void); void ASN1_PRINTABLESTRING_free(ASN1_PRINTABLESTRING *a); ASN1_PRINTABLESTRING *d2i_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING **a, const unsigned char **in, long len); int i2d_ASN1_PRINTABLESTRING(ASN1_PRINTABLESTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_PRINTABLESTRING_it; ASN1_T61STRING *ASN1_T61STRING_new(void); void ASN1_T61STRING_free(ASN1_T61STRING *a); ASN1_T61STRING *d2i_ASN1_T61STRING(ASN1_T61STRING **a, const unsigned char **in, long len); int i2d_ASN1_T61STRING(ASN1_T61STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_T61STRING_it; ASN1_IA5STRING *ASN1_IA5STRING_new(void); void ASN1_IA5STRING_free(ASN1_IA5STRING *a); ASN1_IA5STRING *d2i_ASN1_IA5STRING(ASN1_IA5STRING **a, const unsigned char **in, long len); int i2d_ASN1_IA5STRING(ASN1_IA5STRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_IA5STRING_it; ASN1_GENERALSTRING *ASN1_GENERALSTRING_new(void); void ASN1_GENERALSTRING_free(ASN1_GENERALSTRING *a); ASN1_GENERALSTRING *d2i_ASN1_GENERALSTRING(ASN1_GENERALSTRING **a, const unsigned char **in, long len); int i2d_ASN1_GENERALSTRING(ASN1_GENERALSTRING *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALSTRING_it; ASN1_UTCTIME *ASN1_UTCTIME_new(void); void ASN1_UTCTIME_free(ASN1_UTCTIME *a); ASN1_UTCTIME *d2i_ASN1_UTCTIME(ASN1_UTCTIME **a, const unsigned char **in, long len); int i2d_ASN1_UTCTIME(ASN1_UTCTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_UTCTIME_it; ASN1_GENERALIZEDTIME *ASN1_GENERALIZEDTIME_new(void); void ASN1_GENERALIZEDTIME_free(ASN1_GENERALIZEDTIME *a); ASN1_GENERALIZEDTIME *d2i_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME **a, const unsigned char **in, long len); int i2d_ASN1_GENERALIZEDTIME(ASN1_GENERALIZEDTIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_GENERALIZEDTIME_it; ASN1_TIME *ASN1_TIME_new(void); void ASN1_TIME_free(ASN1_TIME *a); ASN1_TIME *d2i_ASN1_TIME(ASN1_TIME **a, const unsigned char **in, long len); int i2d_ASN1_TIME(ASN1_TIME *a, unsigned char **out); extern const ASN1_ITEM ASN1_TIME_it; extern const ASN1_ITEM ASN1_OCTET_STRING_NDEF_it; ASN1_TIME *ASN1_TIME_set(ASN1_TIME *s,time_t t) __attribute__((deprecated)); int ASN1_TIME_check(ASN1_TIME *t) __attribute__((deprecated)); ASN1_GENERALIZEDTIME *ASN1_TIME_to_generalizedtime(ASN1_TIME *t, ASN1_GENERALIZEDTIME **out) __attribute__((deprecated)); int i2d_ASN1_SET(STACK *a, unsigned char **pp, i2d_of_void *i2d, int ex_tag, int ex_class, int is_set) __attribute__((deprecated)); STACK * d2i_ASN1_SET(STACK **a, const unsigned char **pp, long length, d2i_of_void *d2i, void (*free_func)(void *), int ex_tag, int ex_class) __attribute__((deprecated)); int i2a_ASN1_INTEGER(BIO *bp, ASN1_INTEGER *a) __attribute__((deprecated)); int a2i_ASN1_INTEGER(BIO *bp,ASN1_INTEGER *bs,char *buf,int size) __attribute__((deprecated)); int i2a_ASN1_ENUMERATED(BIO *bp, ASN1_ENUMERATED *a) __attribute__((deprecated)); int a2i_ASN1_ENUMERATED(BIO *bp,ASN1_ENUMERATED *bs,char *buf,int size) __attribute__((deprecated)); int i2a_ASN1_OBJECT(BIO *bp,ASN1_OBJECT *a) __attribute__((deprecated)); int a2i_ASN1_STRING(BIO *bp,ASN1_STRING *bs,char *buf,int size) __attribute__((deprecated)); int i2a_ASN1_STRING(BIO *bp, ASN1_STRING *a, int type) __attribute__((deprecated)); int i2t_ASN1_OBJECT(char *buf,int buf_len,ASN1_OBJECT *a) __attribute__((deprecated)); int a2d_ASN1_OBJECT(unsigned char *out,int olen, const char *buf, int num) __attribute__((deprecated)); ASN1_OBJECT *ASN1_OBJECT_create(int nid, unsigned char *data,int len, const char *sn, const char *ln) __attribute__((deprecated)); int ASN1_INTEGER_set(ASN1_INTEGER *a, long v) __attribute__((deprecated)); long ASN1_INTEGER_get(ASN1_INTEGER *a) __attribute__((deprecated)); ASN1_INTEGER *BN_to_ASN1_INTEGER(BIGNUM *bn, ASN1_INTEGER *ai) __attribute__((deprecated)); BIGNUM *ASN1_INTEGER_to_BN(ASN1_INTEGER *ai,BIGNUM *bn) __attribute__((deprecated)); int ASN1_ENUMERATED_set(ASN1_ENUMERATED *a, long v) __attribute__((deprecated)); long ASN1_ENUMERATED_get(ASN1_ENUMERATED *a) __attribute__((deprecated)); ASN1_ENUMERATED *BN_to_ASN1_ENUMERATED(BIGNUM *bn, ASN1_ENUMERATED *ai) __attribute__((deprecated)); BIGNUM *ASN1_ENUMERATED_to_BN(ASN1_ENUMERATED *ai,BIGNUM *bn) __attribute__((deprecated)); int ASN1_PRINTABLE_type(const unsigned char *s, int max) __attribute__((deprecated)); int i2d_ASN1_bytes(ASN1_STRING *a, unsigned char **pp, int tag, int xclass) __attribute__((deprecated)); ASN1_STRING *d2i_ASN1_bytes(ASN1_STRING **a, const unsigned char **pp, long length, int Ptag, int Pclass) __attribute__((deprecated)); unsigned long ASN1_tag2bit(int tag) __attribute__((deprecated)); ASN1_STRING *d2i_ASN1_type_bytes(ASN1_STRING **a,const unsigned char **pp, long length,int type) __attribute__((deprecated)); int asn1_Finish(ASN1_CTX *c) __attribute__((deprecated)); int asn1_const_Finish(ASN1_const_CTX *c) __attribute__((deprecated)); int ASN1_get_object(const unsigned char **pp, long *plength, int *ptag, int *pclass, long omax) __attribute__((deprecated)); int ASN1_check_infinite_end(unsigned char **p,long len) __attribute__((deprecated)); int ASN1_const_check_infinite_end(const unsigned char **p,long len) __attribute__((deprecated)); void ASN1_put_object(unsigned char **pp, int constructed, int length, int tag, int xclass) __attribute__((deprecated)); int ASN1_put_eoc(unsigned char **pp) __attribute__((deprecated)); int ASN1_object_size(int constructed, int length, int tag) __attribute__((deprecated)); void *ASN1_dup(i2d_of_void *i2d, d2i_of_void *d2i, char *x) __attribute__((deprecated)); # 948 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_item_dup(const ASN1_ITEM *it, void *x) __attribute__((deprecated)); # 957 "/usr/include/openssl/asn1.h" 3 4 void *ASN1_d2i_fp(void *(*xnew)(void), d2i_of_void *d2i, FILE *in, void **x) __attribute__((deprecated)); void *ASN1_item_d2i_fp(const ASN1_ITEM *it, FILE *in, void *x) __attribute__((deprecated)); int ASN1_i2d_fp(i2d_of_void *i2d,FILE *out,void *x) __attribute__((deprecated)); # 978 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_fp(const ASN1_ITEM *it, FILE *out, void *x) __attribute__((deprecated)); int ASN1_STRING_print_ex_fp(FILE *fp, ASN1_STRING *str, unsigned long flags) __attribute__((deprecated)); int ASN1_STRING_to_UTF8(unsigned char **out, ASN1_STRING *in) __attribute__((deprecated)); void *ASN1_d2i_bio(void *(*xnew)(void), d2i_of_void *d2i, BIO *in, void **x) __attribute__((deprecated)); void *ASN1_item_d2i_bio(const ASN1_ITEM *it, BIO *in, void *x) __attribute__((deprecated)); int ASN1_i2d_bio(i2d_of_void *i2d,BIO *out, unsigned char *x) __attribute__((deprecated)); # 1006 "/usr/include/openssl/asn1.h" 3 4 int ASN1_item_i2d_bio(const ASN1_ITEM *it, BIO *out, void *x) __attribute__((deprecated)); int ASN1_UTCTIME_print(BIO *fp,ASN1_UTCTIME *a) __attribute__((deprecated)); int ASN1_GENERALIZEDTIME_print(BIO *fp,ASN1_GENERALIZEDTIME *a) __attribute__((deprecated)); int ASN1_TIME_print(BIO *fp,ASN1_TIME *a) __attribute__((deprecated)); int ASN1_STRING_print(BIO *bp,ASN1_STRING *v) __attribute__((deprecated)); int ASN1_STRING_print_ex(BIO *out, ASN1_STRING *str, unsigned long flags) __attribute__((deprecated)); int ASN1_parse(BIO *bp,const unsigned char *pp,long len,int indent) __attribute__((deprecated)); int ASN1_parse_dump(BIO *bp,const unsigned char *pp,long len,int indent,int dump) __attribute__((deprecated)); const char *ASN1_tag2str(int tag) __attribute__((deprecated)); int i2d_ASN1_HEADER(ASN1_HEADER *a,unsigned char **pp) __attribute__((deprecated)); ASN1_HEADER *d2i_ASN1_HEADER(ASN1_HEADER **a,const unsigned char **pp, long length) __attribute__((deprecated)); ASN1_HEADER *ASN1_HEADER_new(void ) __attribute__((deprecated)); void ASN1_HEADER_free(ASN1_HEADER *a) __attribute__((deprecated)); int ASN1_UNIVERSALSTRING_to_string(ASN1_UNIVERSALSTRING *s) __attribute__((deprecated)); ASN1_METHOD *X509_asn1_meth(void) __attribute__((deprecated)); ASN1_METHOD *RSAPrivateKey_asn1_meth(void) __attribute__((deprecated)); ASN1_METHOD *ASN1_IA5STRING_asn1_meth(void) __attribute__((deprecated)); ASN1_METHOD *ASN1_BIT_STRING_asn1_meth(void) __attribute__((deprecated)); int ASN1_TYPE_set_octetstring(ASN1_TYPE *a, unsigned char *data, int len) __attribute__((deprecated)); int ASN1_TYPE_get_octetstring(ASN1_TYPE *a, unsigned char *data, int max_len) __attribute__((deprecated)); int ASN1_TYPE_set_int_octetstring(ASN1_TYPE *a, long num, unsigned char *data, int len) __attribute__((deprecated)); int ASN1_TYPE_get_int_octetstring(ASN1_TYPE *a,long *num, unsigned char *data, int max_len) __attribute__((deprecated)); STACK *ASN1_seq_unpack(const unsigned char *buf, int len, d2i_of_void *d2i, void (*free_func)(void *)) __attribute__((deprecated)); unsigned char *ASN1_seq_pack(STACK *safes, i2d_of_void *i2d, unsigned char **buf, int *len ) __attribute__((deprecated)); void *ASN1_unpack_string(ASN1_STRING *oct, d2i_of_void *d2i) __attribute__((deprecated)); void *ASN1_item_unpack(ASN1_STRING *oct, const ASN1_ITEM *it) __attribute__((deprecated)); ASN1_STRING *ASN1_pack_string(void *obj, i2d_of_void *i2d, ASN1_OCTET_STRING **oct) __attribute__((deprecated)); ASN1_STRING *ASN1_item_pack(void *obj, const ASN1_ITEM *it, ASN1_OCTET_STRING **oct) __attribute__((deprecated)); void ASN1_STRING_set_default_mask(unsigned long mask) __attribute__((deprecated)); int ASN1_STRING_set_default_mask_asc(const char *p) __attribute__((deprecated)); unsigned long ASN1_STRING_get_default_mask(void) __attribute__((deprecated)); int ASN1_mbstring_copy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask) __attribute__((deprecated)); int ASN1_mbstring_ncopy(ASN1_STRING **out, const unsigned char *in, int len, int inform, unsigned long mask, long minsize, long maxsize) __attribute__((deprecated)); ASN1_STRING *ASN1_STRING_set_by_NID(ASN1_STRING **out, const unsigned char *in, int inlen, int inform, int nid) __attribute__((deprecated)); ASN1_STRING_TABLE *ASN1_STRING_TABLE_get(int nid) __attribute__((deprecated)); int ASN1_STRING_TABLE_add(int, long, long, unsigned long, unsigned long) __attribute__((deprecated)); void ASN1_STRING_TABLE_cleanup(void) __attribute__((deprecated)); ASN1_VALUE *ASN1_item_new(const ASN1_ITEM *it) __attribute__((deprecated)); void ASN1_item_free(ASN1_VALUE *val, const ASN1_ITEM *it) __attribute__((deprecated)); ASN1_VALUE * ASN1_item_d2i(ASN1_VALUE **val, const unsigned char **in, long len, const ASN1_ITEM *it) __attribute__((deprecated)); int ASN1_item_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it) __attribute__((deprecated)); int ASN1_item_ndef_i2d(ASN1_VALUE *val, unsigned char **out, const ASN1_ITEM *it) __attribute__((deprecated)); void ASN1_add_oid_module(void) __attribute__((deprecated)); ASN1_TYPE *ASN1_generate_nconf(char *str, CONF *nconf) __attribute__((deprecated)); ASN1_TYPE *ASN1_generate_v3(char *str, X509V3_CTX *cnf) __attribute__((deprecated)); typedef int asn1_output_data_fn(BIO *out, BIO *data, ASN1_VALUE *val, int flags, const ASN1_ITEM *it); int int_smime_write_ASN1(BIO *bio, ASN1_VALUE *val, BIO *data, int flags, int ctype_nid, int econt_nid, STACK *mdalgs, asn1_output_data_fn *data_fn, const ASN1_ITEM *it) __attribute__((deprecated)); ASN1_VALUE *SMIME_read_ASN1(BIO *bio, BIO **bcont, const ASN1_ITEM *it) __attribute__((deprecated)); void ERR_load_ASN1_strings(void) __attribute__((deprecated)); # 963 "/usr/include/openssl/objects.h" 2 3 4 # 981 "/usr/include/openssl/objects.h" 3 4 typedef struct obj_name_st { int type; int alias; const char *name; const char *data; } OBJ_NAME; int OBJ_NAME_init(void) __attribute__((deprecated)); int OBJ_NAME_new_index(unsigned long (*hash_func)(const char *), int (*cmp_func)(const char *, const char *), void (*free_func)(const char *, int, const char *)) __attribute__((deprecated)); const char *OBJ_NAME_get(const char *name,int type) __attribute__((deprecated)); int OBJ_NAME_add(const char *name,int type,const char *data) __attribute__((deprecated)); int OBJ_NAME_remove(const char *name,int type) __attribute__((deprecated)); void OBJ_NAME_cleanup(int type) __attribute__((deprecated)); void OBJ_NAME_do_all(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg) __attribute__((deprecated)); void OBJ_NAME_do_all_sorted(int type,void (*fn)(const OBJ_NAME *,void *arg), void *arg) __attribute__((deprecated)); ASN1_OBJECT * OBJ_dup(const ASN1_OBJECT *o) __attribute__((deprecated)); ASN1_OBJECT * OBJ_nid2obj(int n) __attribute__((deprecated)); const char * OBJ_nid2ln(int n) __attribute__((deprecated)); const char * OBJ_nid2sn(int n) __attribute__((deprecated)); int OBJ_obj2nid(const ASN1_OBJECT *o) __attribute__((deprecated)); ASN1_OBJECT * OBJ_txt2obj(const char *s, int no_name) __attribute__((deprecated)); int OBJ_obj2txt(char *buf, int buf_len, const ASN1_OBJECT *a, int no_name) __attribute__((deprecated)); int OBJ_txt2nid(const char *s) __attribute__((deprecated)); int OBJ_ln2nid(const char *s) __attribute__((deprecated)); int OBJ_sn2nid(const char *s) __attribute__((deprecated)); int OBJ_cmp(const ASN1_OBJECT *a,const ASN1_OBJECT *b) __attribute__((deprecated)); const char * OBJ_bsearch(const char *key,const char *base,int num,int size, int (*cmp)(const void *, const void *)) __attribute__((deprecated)); const char * OBJ_bsearch_ex(const char *key,const char *base,int num, int size, int (*cmp)(const void *, const void *), int flags) __attribute__((deprecated)); int OBJ_new_nid(int num) __attribute__((deprecated)); int OBJ_add_object(const ASN1_OBJECT *obj) __attribute__((deprecated)); int OBJ_create(const char *oid,const char *sn,const char *ln) __attribute__((deprecated)); void OBJ_cleanup(void ) __attribute__((deprecated)); int OBJ_create_objects(BIO *in) __attribute__((deprecated)); void ERR_load_OBJ_strings(void) __attribute__((deprecated)); # 101 "/usr/include/openssl/evp.h" 2 3 4 # 132 "/usr/include/openssl/evp.h" 3 4 struct evp_pkey_st { int type; int save_type; int references; union { char *ptr; struct rsa_st *rsa; struct dsa_st *dsa; struct dh_st *dh; struct ec_key_st *ec; } pkey; int save_parameters; STACK *attributes; } ; # 229 "/usr/include/openssl/evp.h" 3 4 struct env_md_st { int type; int pkey_type; int md_size; unsigned long flags; int (*init)(EVP_MD_CTX *ctx) __attribute__((deprecated)); int (*update)(EVP_MD_CTX *ctx,const void *data,size_t count) __attribute__((deprecated)); int (*final)(EVP_MD_CTX *ctx,unsigned char *md) __attribute__((deprecated)); int (*copy)(EVP_MD_CTX *to,const EVP_MD_CTX *from) __attribute__((deprecated)); int (*cleanup)(EVP_MD_CTX *ctx) __attribute__((deprecated)); int (*sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, void *key) __attribute__((deprecated)); int (*verify)(int type, const unsigned char *m, unsigned int m_length, const unsigned char *sigbuf, unsigned int siglen, void *key) __attribute__((deprecated)); int required_pkey_type[5]; int block_size; int ctx_size; } ; typedef int evp_sign_method(int type,const unsigned char *m, unsigned int m_length,unsigned char *sigret, unsigned int *siglen, void *key); typedef int evp_verify_method(int type,const unsigned char *m, unsigned int m_length,const unsigned char *sigbuf, unsigned int siglen, void *key); typedef struct { EVP_MD_CTX *mctx; void *key; } EVP_MD_SVCTX; # 306 "/usr/include/openssl/evp.h" 3 4 struct env_md_ctx_st { const EVP_MD *digest; ENGINE *engine; unsigned long flags; void *md_data; } ; # 334 "/usr/include/openssl/evp.h" 3 4 struct evp_cipher_st { int nid; int block_size; int key_len; int iv_len; unsigned long flags; int (*init)(EVP_CIPHER_CTX *ctx, const unsigned char *key, const unsigned char *iv, int enc) __attribute__((deprecated)); int (*do_cipher)(EVP_CIPHER_CTX *ctx, unsigned char *out, const unsigned char *in, unsigned int inl) __attribute__((deprecated)); int (*cleanup)(EVP_CIPHER_CTX *) __attribute__((deprecated)); int ctx_size; int (*set_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *) __attribute__((deprecated)); int (*get_asn1_parameters)(EVP_CIPHER_CTX *, ASN1_TYPE *) __attribute__((deprecated)); int (*ctrl)(EVP_CIPHER_CTX *, int type, int arg, void *ptr) __attribute__((deprecated)); void *app_data; } ; # 396 "/usr/include/openssl/evp.h" 3 4 typedef struct evp_cipher_info_st { const EVP_CIPHER *cipher; unsigned char iv[16]; } EVP_CIPHER_INFO; struct evp_cipher_ctx_st { const EVP_CIPHER *cipher; ENGINE *engine; int encrypt; int buf_len; unsigned char oiv[16]; unsigned char iv[16]; unsigned char buf[32]; int num; void *app_data; int key_len; unsigned long flags; void *cipher_data; int final_used; int block_mask; unsigned char final[32]; } ; typedef struct evp_Encode_Ctx_st { int num; int length; unsigned char enc_data[80]; int line_num; int expect_nl; } EVP_ENCODE_CTX; typedef int (EVP_PBE_KEYGEN)(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de); # 479 "/usr/include/openssl/evp.h" 3 4 int EVP_MD_type(const EVP_MD *md) __attribute__((deprecated)); int EVP_MD_pkey_type(const EVP_MD *md) __attribute__((deprecated)); int EVP_MD_size(const EVP_MD *md) __attribute__((deprecated)); int EVP_MD_block_size(const EVP_MD *md) __attribute__((deprecated)); const EVP_MD * EVP_MD_CTX_md(const EVP_MD_CTX *ctx) __attribute__((deprecated)); int EVP_CIPHER_nid(const EVP_CIPHER *cipher) __attribute__((deprecated)); int EVP_CIPHER_block_size(const EVP_CIPHER *cipher) __attribute__((deprecated)); int EVP_CIPHER_key_length(const EVP_CIPHER *cipher) __attribute__((deprecated)); int EVP_CIPHER_iv_length(const EVP_CIPHER *cipher) __attribute__((deprecated)); unsigned long EVP_CIPHER_flags(const EVP_CIPHER *cipher) __attribute__((deprecated)); const EVP_CIPHER * EVP_CIPHER_CTX_cipher(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); int EVP_CIPHER_CTX_nid(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); int EVP_CIPHER_CTX_block_size(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); int EVP_CIPHER_CTX_key_length(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); int EVP_CIPHER_CTX_iv_length(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); void * EVP_CIPHER_CTX_get_app_data(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); void EVP_CIPHER_CTX_set_app_data(EVP_CIPHER_CTX *ctx, void *data) __attribute__((deprecated)); unsigned long EVP_CIPHER_CTX_flags(const EVP_CIPHER_CTX *ctx) __attribute__((deprecated)); # 533 "/usr/include/openssl/evp.h" 3 4 int EVP_Cipher(EVP_CIPHER_CTX *c, unsigned char *out, const unsigned char *in, unsigned int inl) __attribute__((deprecated)); # 547 "/usr/include/openssl/evp.h" 3 4 void EVP_MD_CTX_init(EVP_MD_CTX *ctx) __attribute__((deprecated)); int EVP_MD_CTX_cleanup(EVP_MD_CTX *ctx) __attribute__((deprecated)); EVP_MD_CTX *EVP_MD_CTX_create(void) __attribute__((deprecated)); void EVP_MD_CTX_destroy(EVP_MD_CTX *ctx) __attribute__((deprecated)); int EVP_MD_CTX_copy_ex(EVP_MD_CTX *out,const EVP_MD_CTX *in) __attribute__((deprecated)); void EVP_MD_CTX_set_flags(EVP_MD_CTX *ctx, int flags) __attribute__((deprecated)); void EVP_MD_CTX_clear_flags(EVP_MD_CTX *ctx, int flags) __attribute__((deprecated)); int EVP_MD_CTX_test_flags(const EVP_MD_CTX *ctx,int flags) __attribute__((deprecated)); int EVP_DigestInit_ex(EVP_MD_CTX *ctx, const EVP_MD *type, ENGINE *impl) __attribute__((deprecated)); int EVP_DigestUpdate(EVP_MD_CTX *ctx,const void *d, size_t cnt) __attribute__((deprecated)); int EVP_DigestFinal_ex(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s) __attribute__((deprecated)); int EVP_Digest(const void *data, size_t count, unsigned char *md, unsigned int *size, const EVP_MD *type, ENGINE *impl) __attribute__((deprecated)); int EVP_MD_CTX_copy(EVP_MD_CTX *out,const EVP_MD_CTX *in) __attribute__((deprecated)); int EVP_DigestInit(EVP_MD_CTX *ctx, const EVP_MD *type) __attribute__((deprecated)); int EVP_DigestFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s) __attribute__((deprecated)); int EVP_read_pw_string(char *buf,int length,const char *prompt,int verify) __attribute__((deprecated)); void EVP_set_pw_prompt(const char *prompt) __attribute__((deprecated)); char * EVP_get_pw_prompt(void) __attribute__((deprecated)); int EVP_BytesToKey(const EVP_CIPHER *type,const EVP_MD *md, const unsigned char *salt, const unsigned char *data, int datal, int count, unsigned char *key,unsigned char *iv) __attribute__((deprecated)); void EVP_CIPHER_CTX_set_flags(EVP_CIPHER_CTX *ctx, int flags) __attribute__((deprecated)); void EVP_CIPHER_CTX_clear_flags(EVP_CIPHER_CTX *ctx, int flags) __attribute__((deprecated)); int EVP_CIPHER_CTX_test_flags(const EVP_CIPHER_CTX *ctx,int flags) __attribute__((deprecated)); int EVP_EncryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv) __attribute__((deprecated)); int EVP_EncryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv) __attribute__((deprecated)); int EVP_EncryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl) __attribute__((deprecated)); int EVP_EncryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl) __attribute__((deprecated)); int EVP_EncryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl) __attribute__((deprecated)); int EVP_DecryptInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key, const unsigned char *iv) __attribute__((deprecated)); int EVP_DecryptInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key, const unsigned char *iv) __attribute__((deprecated)); int EVP_DecryptUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl) __attribute__((deprecated)); int EVP_DecryptFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl) __attribute__((deprecated)); int EVP_DecryptFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl) __attribute__((deprecated)); int EVP_CipherInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, const unsigned char *key,const unsigned char *iv, int enc) __attribute__((deprecated)); int EVP_CipherInit_ex(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *cipher, ENGINE *impl, const unsigned char *key,const unsigned char *iv, int enc) __attribute__((deprecated)); int EVP_CipherUpdate(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl, const unsigned char *in, int inl) __attribute__((deprecated)); int EVP_CipherFinal(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl) __attribute__((deprecated)); int EVP_CipherFinal_ex(EVP_CIPHER_CTX *ctx, unsigned char *outm, int *outl) __attribute__((deprecated)); int EVP_SignFinal(EVP_MD_CTX *ctx,unsigned char *md,unsigned int *s, EVP_PKEY *pkey) __attribute__((deprecated)); int EVP_VerifyFinal(EVP_MD_CTX *ctx,const unsigned char *sigbuf, unsigned int siglen,EVP_PKEY *pkey) __attribute__((deprecated)); int EVP_OpenInit(EVP_CIPHER_CTX *ctx,const EVP_CIPHER *type, const unsigned char *ek, int ekl, const unsigned char *iv, EVP_PKEY *priv) __attribute__((deprecated)); int EVP_OpenFinal(EVP_CIPHER_CTX *ctx, unsigned char *out, int *outl) __attribute__((deprecated)); int EVP_SealInit(EVP_CIPHER_CTX *ctx, const EVP_CIPHER *type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk) __attribute__((deprecated)); int EVP_SealFinal(EVP_CIPHER_CTX *ctx,unsigned char *out,int *outl) __attribute__((deprecated)); void EVP_EncodeInit(EVP_ENCODE_CTX *ctx) __attribute__((deprecated)); void EVP_EncodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in,int inl) __attribute__((deprecated)); void EVP_EncodeFinal(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl) __attribute__((deprecated)); int EVP_EncodeBlock(unsigned char *t, const unsigned char *f, int n) __attribute__((deprecated)); void EVP_DecodeInit(EVP_ENCODE_CTX *ctx) __attribute__((deprecated)); int EVP_DecodeUpdate(EVP_ENCODE_CTX *ctx,unsigned char *out,int *outl, const unsigned char *in, int inl) __attribute__((deprecated)); int EVP_DecodeFinal(EVP_ENCODE_CTX *ctx, unsigned char *out, int *outl) __attribute__((deprecated)); int EVP_DecodeBlock(unsigned char *t, const unsigned char *f, int n) __attribute__((deprecated)); void EVP_CIPHER_CTX_init(EVP_CIPHER_CTX *a) __attribute__((deprecated)); int EVP_CIPHER_CTX_cleanup(EVP_CIPHER_CTX *a) __attribute__((deprecated)); EVP_CIPHER_CTX *EVP_CIPHER_CTX_new(void) __attribute__((deprecated)); void EVP_CIPHER_CTX_free(EVP_CIPHER_CTX *a) __attribute__((deprecated)); int EVP_CIPHER_CTX_set_key_length(EVP_CIPHER_CTX *x, int keylen) __attribute__((deprecated)); int EVP_CIPHER_CTX_set_padding(EVP_CIPHER_CTX *c, int pad) __attribute__((deprecated)); int EVP_CIPHER_CTX_ctrl(EVP_CIPHER_CTX *ctx, int type, int arg, void *ptr) __attribute__((deprecated)); int EVP_CIPHER_CTX_rand_key(EVP_CIPHER_CTX *ctx, unsigned char *key) __attribute__((deprecated)); BIO_METHOD *BIO_f_md(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_base64(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_cipher(void) __attribute__((deprecated)); BIO_METHOD *BIO_f_reliable(void) __attribute__((deprecated)); void BIO_set_cipher(BIO *b,const EVP_CIPHER *c,const unsigned char *k, const unsigned char *i, int enc) __attribute__((deprecated)); const EVP_MD *EVP_md_null(void) __attribute__((deprecated)); const EVP_MD *EVP_md2(void) __attribute__((deprecated)); const EVP_MD *EVP_md4(void) __attribute__((deprecated)); const EVP_MD *EVP_md5(void) __attribute__((deprecated)); const EVP_MD *EVP_sha(void) __attribute__((deprecated)); const EVP_MD *EVP_sha1(void) __attribute__((deprecated)); const EVP_MD *EVP_dss(void) __attribute__((deprecated)); const EVP_MD *EVP_dss1(void) __attribute__((deprecated)); const EVP_MD *EVP_ecdsa(void) __attribute__((deprecated)); const EVP_MD *EVP_sha224(void) __attribute__((deprecated)); const EVP_MD *EVP_sha256(void) __attribute__((deprecated)); const EVP_MD *EVP_sha384(void) __attribute__((deprecated)); const EVP_MD *EVP_sha512(void) __attribute__((deprecated)); const EVP_MD *EVP_mdc2(void) __attribute__((deprecated)); const EVP_MD *EVP_ripemd160(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_enc_null(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_cfb1(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_cfb8(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_cfb1(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_cfb8(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_des_ede3_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_desx_cbc(void) __attribute__((deprecated)); # 724 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_rc4(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc4_40(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_40_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_64_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc2_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_bf_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_bf_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_bf_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_bf_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_cast5_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_cast5_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_cast5_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_cast5_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc5_32_12_16_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc5_32_12_16_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc5_32_12_16_cfb64(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_rc5_32_12_16_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_cfb1(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_cfb8(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_cfb128(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_128_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_cfb1(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_cfb8(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_cfb128(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_192_ofb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_cfb1(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_cfb8(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_cfb128(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_aes_256_ofb(void) __attribute__((deprecated)); # 814 "/usr/include/openssl/evp.h" 3 4 const EVP_CIPHER *EVP_seed_ecb(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_seed_cbc(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_seed_cfb128(void) __attribute__((deprecated)); const EVP_CIPHER *EVP_seed_ofb(void) __attribute__((deprecated)); void OPENSSL_add_all_algorithms_noconf(void) __attribute__((deprecated)); void OPENSSL_add_all_algorithms_conf(void) __attribute__((deprecated)); # 832 "/usr/include/openssl/evp.h" 3 4 void OpenSSL_add_all_ciphers(void) __attribute__((deprecated)); void OpenSSL_add_all_digests(void) __attribute__((deprecated)); int EVP_add_cipher(const EVP_CIPHER *cipher) __attribute__((deprecated)); int EVP_add_digest(const EVP_MD *digest) __attribute__((deprecated)); const EVP_CIPHER *EVP_get_cipherbyname(const char *name) __attribute__((deprecated)); const EVP_MD *EVP_get_digestbyname(const char *name) __attribute__((deprecated)); void EVP_cleanup(void) __attribute__((deprecated)); int EVP_PKEY_decrypt(unsigned char *dec_key, const unsigned char *enc_key,int enc_key_len, EVP_PKEY *private_key) __attribute__((deprecated)); int EVP_PKEY_encrypt(unsigned char *enc_key, const unsigned char *key,int key_len, EVP_PKEY *pub_key) __attribute__((deprecated)); int EVP_PKEY_type(int type) __attribute__((deprecated)); int EVP_PKEY_bits(EVP_PKEY *pkey) __attribute__((deprecated)); int EVP_PKEY_size(EVP_PKEY *pkey) __attribute__((deprecated)); int EVP_PKEY_assign(EVP_PKEY *pkey,int type,char *key) __attribute__((deprecated)); struct rsa_st; int EVP_PKEY_set1_RSA(EVP_PKEY *pkey,struct rsa_st *key) __attribute__((deprecated)); struct rsa_st *EVP_PKEY_get1_RSA(EVP_PKEY *pkey) __attribute__((deprecated)); struct dsa_st; int EVP_PKEY_set1_DSA(EVP_PKEY *pkey,struct dsa_st *key) __attribute__((deprecated)); struct dsa_st *EVP_PKEY_get1_DSA(EVP_PKEY *pkey) __attribute__((deprecated)); struct dh_st; int EVP_PKEY_set1_DH(EVP_PKEY *pkey,struct dh_st *key) __attribute__((deprecated)); struct dh_st *EVP_PKEY_get1_DH(EVP_PKEY *pkey) __attribute__((deprecated)); struct ec_key_st; int EVP_PKEY_set1_EC_KEY(EVP_PKEY *pkey,struct ec_key_st *key) __attribute__((deprecated)); struct ec_key_st *EVP_PKEY_get1_EC_KEY(EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY * EVP_PKEY_new(void) __attribute__((deprecated)); void EVP_PKEY_free(EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY * d2i_PublicKey(int type,EVP_PKEY **a, const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_PublicKey(EVP_PKEY *a, unsigned char **pp) __attribute__((deprecated)); EVP_PKEY * d2i_PrivateKey(int type,EVP_PKEY **a, const unsigned char **pp, long length) __attribute__((deprecated)); EVP_PKEY * d2i_AutoPrivateKey(EVP_PKEY **a, const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_PrivateKey(EVP_PKEY *a, unsigned char **pp) __attribute__((deprecated)); int EVP_PKEY_copy_parameters(EVP_PKEY *to, const EVP_PKEY *from) __attribute__((deprecated)); int EVP_PKEY_missing_parameters(const EVP_PKEY *pkey) __attribute__((deprecated)); int EVP_PKEY_save_parameters(EVP_PKEY *pkey,int mode) __attribute__((deprecated)); int EVP_PKEY_cmp_parameters(const EVP_PKEY *a, const EVP_PKEY *b) __attribute__((deprecated)); int EVP_PKEY_cmp(const EVP_PKEY *a, const EVP_PKEY *b) __attribute__((deprecated)); int EVP_CIPHER_type(const EVP_CIPHER *ctx) __attribute__((deprecated)); int EVP_CIPHER_param_to_asn1(EVP_CIPHER_CTX *c, ASN1_TYPE *type) __attribute__((deprecated)); int EVP_CIPHER_asn1_to_param(EVP_CIPHER_CTX *c, ASN1_TYPE *type) __attribute__((deprecated)); int EVP_CIPHER_set_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type) __attribute__((deprecated)); int EVP_CIPHER_get_asn1_iv(EVP_CIPHER_CTX *c,ASN1_TYPE *type) __attribute__((deprecated)); int PKCS5_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de) __attribute__((deprecated)); int PKCS5_PBKDF2_HMAC_SHA1(const char *pass, int passlen, const unsigned char *salt, int saltlen, int iter, int keylen, unsigned char *out) __attribute__((deprecated)); int PKCS5_v2_PBE_keyivgen(EVP_CIPHER_CTX *ctx, const char *pass, int passlen, ASN1_TYPE *param, const EVP_CIPHER *cipher, const EVP_MD *md, int en_de) __attribute__((deprecated)); void PKCS5_PBE_add(void) __attribute__((deprecated)); int EVP_PBE_CipherInit (ASN1_OBJECT *pbe_obj, const char *pass, int passlen, ASN1_TYPE *param, EVP_CIPHER_CTX *ctx, int en_de) __attribute__((deprecated)); int EVP_PBE_alg_add(int nid, const EVP_CIPHER *cipher, const EVP_MD *md, EVP_PBE_KEYGEN *keygen) __attribute__((deprecated)); void EVP_PBE_cleanup(void) __attribute__((deprecated)); # 942 "/usr/include/openssl/evp.h" 3 4 void EVP_add_alg_module(void) __attribute__((deprecated)); void ERR_load_EVP_strings(void) __attribute__((deprecated)); # 76 "/usr/include/openssl/x509.h" 2 3 4 # 85 "/usr/include/openssl/x509.h" 3 4 # 1 "/usr/include/openssl/ec.h" 1 3 4 # 77 "/usr/include/openssl/ec.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 78 "/usr/include/openssl/ec.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 85 "/usr/include/openssl/ec.h" 2 3 4 # 102 "/usr/include/openssl/ec.h" 3 4 typedef enum { POINT_CONVERSION_COMPRESSED = 2, POINT_CONVERSION_UNCOMPRESSED = 4, POINT_CONVERSION_HYBRID = 6 } point_conversion_form_t; typedef struct ec_method_st EC_METHOD; typedef struct ec_group_st # 121 "/usr/include/openssl/ec.h" 3 4 EC_GROUP; typedef struct ec_point_st EC_POINT; const EC_METHOD *EC_GFp_simple_method(void) __attribute__((deprecated)); const EC_METHOD *EC_GFp_mont_method(void) __attribute__((deprecated)); const EC_METHOD *EC_GFp_nist_method(void) __attribute__((deprecated)); const EC_METHOD *EC_GF2m_simple_method(void) __attribute__((deprecated)); EC_GROUP *EC_GROUP_new(const EC_METHOD *) __attribute__((deprecated)); void EC_GROUP_free(EC_GROUP *) __attribute__((deprecated)); void EC_GROUP_clear_free(EC_GROUP *) __attribute__((deprecated)); int EC_GROUP_copy(EC_GROUP *, const EC_GROUP *) __attribute__((deprecated)); EC_GROUP *EC_GROUP_dup(const EC_GROUP *) __attribute__((deprecated)); const EC_METHOD *EC_GROUP_method_of(const EC_GROUP *) __attribute__((deprecated)); int EC_METHOD_get_field_type(const EC_METHOD *) __attribute__((deprecated)); int EC_GROUP_set_generator(EC_GROUP *, const EC_POINT *generator, const BIGNUM *order, const BIGNUM *cofactor) __attribute__((deprecated)); const EC_POINT *EC_GROUP_get0_generator(const EC_GROUP *) __attribute__((deprecated)); int EC_GROUP_get_order(const EC_GROUP *, BIGNUM *order, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_get_cofactor(const EC_GROUP *, BIGNUM *cofactor, BN_CTX *) __attribute__((deprecated)); void EC_GROUP_set_curve_name(EC_GROUP *, int nid) __attribute__((deprecated)); int EC_GROUP_get_curve_name(const EC_GROUP *) __attribute__((deprecated)); void EC_GROUP_set_asn1_flag(EC_GROUP *, int flag) __attribute__((deprecated)); int EC_GROUP_get_asn1_flag(const EC_GROUP *) __attribute__((deprecated)); void EC_GROUP_set_point_conversion_form(EC_GROUP *, point_conversion_form_t) __attribute__((deprecated)); point_conversion_form_t EC_GROUP_get_point_conversion_form(const EC_GROUP *) __attribute__((deprecated)); unsigned char *EC_GROUP_get0_seed(const EC_GROUP *) __attribute__((deprecated)); size_t EC_GROUP_get_seed_len(const EC_GROUP *) __attribute__((deprecated)); size_t EC_GROUP_set_seed(EC_GROUP *, const unsigned char *, size_t len) __attribute__((deprecated)); int EC_GROUP_set_curve_GFp(EC_GROUP *, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_get_curve_GFp(const EC_GROUP *, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_set_curve_GF2m(EC_GROUP *, const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_get_curve_GF2m(const EC_GROUP *, BIGNUM *p, BIGNUM *a, BIGNUM *b, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_get_degree(const EC_GROUP *) __attribute__((deprecated)); int EC_GROUP_check(const EC_GROUP *group, BN_CTX *ctx) __attribute__((deprecated)); int EC_GROUP_check_discriminant(const EC_GROUP *, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_cmp(const EC_GROUP *, const EC_GROUP *, BN_CTX *) __attribute__((deprecated)); EC_GROUP *EC_GROUP_new_curve_GFp(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *) __attribute__((deprecated)); EC_GROUP *EC_GROUP_new_curve_GF2m(const BIGNUM *p, const BIGNUM *a, const BIGNUM *b, BN_CTX *) __attribute__((deprecated)); EC_GROUP *EC_GROUP_new_by_curve_name(int nid) __attribute__((deprecated)); typedef struct { int nid; const char *comment; } EC_builtin_curve; size_t EC_get_builtin_curves(EC_builtin_curve *r, size_t nitems) __attribute__((deprecated)); EC_POINT *EC_POINT_new(const EC_GROUP *) __attribute__((deprecated)); void EC_POINT_free(EC_POINT *) __attribute__((deprecated)); void EC_POINT_clear_free(EC_POINT *) __attribute__((deprecated)); int EC_POINT_copy(EC_POINT *, const EC_POINT *) __attribute__((deprecated)); EC_POINT *EC_POINT_dup(const EC_POINT *, const EC_GROUP *) __attribute__((deprecated)); const EC_METHOD *EC_POINT_method_of(const EC_POINT *) __attribute__((deprecated)); int EC_POINT_set_to_infinity(const EC_GROUP *, EC_POINT *) __attribute__((deprecated)); int EC_POINT_set_Jprojective_coordinates_GFp(const EC_GROUP *, EC_POINT *, const BIGNUM *x, const BIGNUM *y, const BIGNUM *z, BN_CTX *) __attribute__((deprecated)); int EC_POINT_get_Jprojective_coordinates_GFp(const EC_GROUP *, const EC_POINT *, BIGNUM *x, BIGNUM *y, BIGNUM *z, BN_CTX *) __attribute__((deprecated)); int EC_POINT_set_affine_coordinates_GFp(const EC_GROUP *, EC_POINT *, const BIGNUM *x, const BIGNUM *y, BN_CTX *) __attribute__((deprecated)); int EC_POINT_get_affine_coordinates_GFp(const EC_GROUP *, const EC_POINT *, BIGNUM *x, BIGNUM *y, BN_CTX *) __attribute__((deprecated)); int EC_POINT_set_compressed_coordinates_GFp(const EC_GROUP *, EC_POINT *, const BIGNUM *x, int y_bit, BN_CTX *) __attribute__((deprecated)); int EC_POINT_set_affine_coordinates_GF2m(const EC_GROUP *, EC_POINT *, const BIGNUM *x, const BIGNUM *y, BN_CTX *) __attribute__((deprecated)); int EC_POINT_get_affine_coordinates_GF2m(const EC_GROUP *, const EC_POINT *, BIGNUM *x, BIGNUM *y, BN_CTX *) __attribute__((deprecated)); int EC_POINT_set_compressed_coordinates_GF2m(const EC_GROUP *, EC_POINT *, const BIGNUM *x, int y_bit, BN_CTX *) __attribute__((deprecated)); size_t EC_POINT_point2oct(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, unsigned char *buf, size_t len, BN_CTX *) __attribute__((deprecated)); int EC_POINT_oct2point(const EC_GROUP *, EC_POINT *, const unsigned char *buf, size_t len, BN_CTX *) __attribute__((deprecated)); BIGNUM *EC_POINT_point2bn(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BIGNUM *, BN_CTX *) __attribute__((deprecated)); EC_POINT *EC_POINT_bn2point(const EC_GROUP *, const BIGNUM *, EC_POINT *, BN_CTX *) __attribute__((deprecated)); char *EC_POINT_point2hex(const EC_GROUP *, const EC_POINT *, point_conversion_form_t form, BN_CTX *) __attribute__((deprecated)); EC_POINT *EC_POINT_hex2point(const EC_GROUP *, const char *, EC_POINT *, BN_CTX *) __attribute__((deprecated)); int EC_POINT_add(const EC_GROUP *, EC_POINT *r, const EC_POINT *a, const EC_POINT *b, BN_CTX *) __attribute__((deprecated)); int EC_POINT_dbl(const EC_GROUP *, EC_POINT *r, const EC_POINT *a, BN_CTX *) __attribute__((deprecated)); int EC_POINT_invert(const EC_GROUP *, EC_POINT *, BN_CTX *) __attribute__((deprecated)); int EC_POINT_is_at_infinity(const EC_GROUP *, const EC_POINT *) __attribute__((deprecated)); int EC_POINT_is_on_curve(const EC_GROUP *, const EC_POINT *, BN_CTX *) __attribute__((deprecated)); int EC_POINT_cmp(const EC_GROUP *, const EC_POINT *a, const EC_POINT *b, BN_CTX *) __attribute__((deprecated)); int EC_POINT_make_affine(const EC_GROUP *, EC_POINT *, BN_CTX *) __attribute__((deprecated)); int EC_POINTs_make_affine(const EC_GROUP *, size_t num, EC_POINT *[], BN_CTX *) __attribute__((deprecated)); int EC_POINTs_mul(const EC_GROUP *, EC_POINT *r, const BIGNUM *, size_t num, const EC_POINT *[], const BIGNUM *[], BN_CTX *) __attribute__((deprecated)); int EC_POINT_mul(const EC_GROUP *, EC_POINT *r, const BIGNUM *, const EC_POINT *, const BIGNUM *, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_precompute_mult(EC_GROUP *, BN_CTX *) __attribute__((deprecated)); int EC_GROUP_have_precompute_mult(const EC_GROUP *) __attribute__((deprecated)); int EC_GROUP_get_basis_type(const EC_GROUP *) __attribute__((deprecated)); int EC_GROUP_get_trinomial_basis(const EC_GROUP *, unsigned int *k) __attribute__((deprecated)); int EC_GROUP_get_pentanomial_basis(const EC_GROUP *, unsigned int *k1, unsigned int *k2, unsigned int *k3) __attribute__((deprecated)); typedef struct ecpk_parameters_st ECPKPARAMETERS; EC_GROUP *d2i_ECPKParameters(EC_GROUP **, const unsigned char **in, long len) __attribute__((deprecated)); int i2d_ECPKParameters(const EC_GROUP *, unsigned char **out) __attribute__((deprecated)); # 292 "/usr/include/openssl/ec.h" 3 4 int ECPKParameters_print(BIO *bp, const EC_GROUP *x, int off) __attribute__((deprecated)); int ECPKParameters_print_fp(FILE *fp, const EC_GROUP *x, int off) __attribute__((deprecated)); typedef struct ec_key_st EC_KEY; EC_KEY *EC_KEY_new(void) __attribute__((deprecated)); EC_KEY *EC_KEY_new_by_curve_name(int nid) __attribute__((deprecated)); void EC_KEY_free(EC_KEY *) __attribute__((deprecated)); EC_KEY *EC_KEY_copy(EC_KEY *, const EC_KEY *) __attribute__((deprecated)); EC_KEY *EC_KEY_dup(const EC_KEY *) __attribute__((deprecated)); int EC_KEY_up_ref(EC_KEY *) __attribute__((deprecated)); const EC_GROUP *EC_KEY_get0_group(const EC_KEY *) __attribute__((deprecated)); int EC_KEY_set_group(EC_KEY *, const EC_GROUP *) __attribute__((deprecated)); const BIGNUM *EC_KEY_get0_private_key(const EC_KEY *) __attribute__((deprecated)); int EC_KEY_set_private_key(EC_KEY *, const BIGNUM *) __attribute__((deprecated)); const EC_POINT *EC_KEY_get0_public_key(const EC_KEY *) __attribute__((deprecated)); int EC_KEY_set_public_key(EC_KEY *, const EC_POINT *) __attribute__((deprecated)); unsigned EC_KEY_get_enc_flags(const EC_KEY *) __attribute__((deprecated)); void EC_KEY_set_enc_flags(EC_KEY *, unsigned int) __attribute__((deprecated)); point_conversion_form_t EC_KEY_get_conv_form(const EC_KEY *) __attribute__((deprecated)); void EC_KEY_set_conv_form(EC_KEY *, point_conversion_form_t) __attribute__((deprecated)); void *EC_KEY_get_key_method_data(EC_KEY *, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)) __attribute__((deprecated)); # 334 "/usr/include/openssl/ec.h" 3 4 void *EC_KEY_insert_key_method_data(EC_KEY *key, void *data, void *(*dup_func)(void *), void (*free_func)(void *), void (*clear_free_func)(void *)) __attribute__((deprecated)); void EC_KEY_set_asn1_flag(EC_KEY *, int) __attribute__((deprecated)); int EC_KEY_precompute_mult(EC_KEY *, BN_CTX *ctx) __attribute__((deprecated)); int EC_KEY_generate_key(EC_KEY *) __attribute__((deprecated)); int EC_KEY_check_key(const EC_KEY *) __attribute__((deprecated)); EC_KEY *d2i_ECPrivateKey(EC_KEY **a, const unsigned char **in, long len) __attribute__((deprecated)); int i2d_ECPrivateKey(EC_KEY *a, unsigned char **out) __attribute__((deprecated)); EC_KEY *d2i_ECParameters(EC_KEY **a, const unsigned char **in, long len) __attribute__((deprecated)); int i2d_ECParameters(EC_KEY *a, unsigned char **out) __attribute__((deprecated)); EC_KEY *o2i_ECPublicKey(EC_KEY **a, const unsigned char **in, long len) __attribute__((deprecated)); int i2o_ECPublicKey(EC_KEY *a, unsigned char **out) __attribute__((deprecated)); int ECParameters_print(BIO *bp, const EC_KEY *x) __attribute__((deprecated)); int EC_KEY_print(BIO *bp, const EC_KEY *x, int off) __attribute__((deprecated)); int ECParameters_print_fp(FILE *fp, const EC_KEY *x) __attribute__((deprecated)); int EC_KEY_print_fp(FILE *fp, const EC_KEY *x, int off) __attribute__((deprecated)); # 379 "/usr/include/openssl/ec.h" 3 4 void ERR_load_EC_strings(void) __attribute__((deprecated)); # 86 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdsa.h" 1 3 4 # 64 "/usr/include/openssl/ecdsa.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 65 "/usr/include/openssl/ecdsa.h" 2 3 4 # 80 "/usr/include/openssl/ecdsa.h" 3 4 typedef struct ECDSA_SIG_st { BIGNUM *r; BIGNUM *s; } ECDSA_SIG; ECDSA_SIG *ECDSA_SIG_new(void) __attribute__((deprecated)); void ECDSA_SIG_free(ECDSA_SIG *a) __attribute__((deprecated)); # 105 "/usr/include/openssl/ecdsa.h" 3 4 int i2d_ECDSA_SIG(const ECDSA_SIG *a, unsigned char **pp) __attribute__((deprecated)); # 115 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *d2i_ECDSA_SIG(ECDSA_SIG **v, const unsigned char **pp, long len) __attribute__((deprecated)); # 125 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign(const unsigned char *dgst,int dgst_len,EC_KEY *eckey) __attribute__((deprecated)); # 138 "/usr/include/openssl/ecdsa.h" 3 4 ECDSA_SIG *ECDSA_do_sign_ex(const unsigned char *dgst, int dgstlen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey) __attribute__((deprecated)); # 150 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_do_verify(const unsigned char *dgst, int dgst_len, const ECDSA_SIG *sig, EC_KEY* eckey) __attribute__((deprecated)); const ECDSA_METHOD *ECDSA_OpenSSL(void) __attribute__((deprecated)); void ECDSA_set_default_method(const ECDSA_METHOD *meth) __attribute__((deprecated)); const ECDSA_METHOD *ECDSA_get_default_method(void) __attribute__((deprecated)); int ECDSA_set_method(EC_KEY *eckey, const ECDSA_METHOD *meth) __attribute__((deprecated)); int ECDSA_size(const EC_KEY *eckey) __attribute__((deprecated)); # 190 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_setup(EC_KEY *eckey, BN_CTX *ctx, BIGNUM **kinv, BIGNUM **rp) __attribute__((deprecated)); # 204 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, EC_KEY *eckey) __attribute__((deprecated)); # 222 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_sign_ex(int type, const unsigned char *dgst, int dgstlen, unsigned char *sig, unsigned int *siglen, const BIGNUM *kinv, const BIGNUM *rp, EC_KEY *eckey) __attribute__((deprecated)); # 237 "/usr/include/openssl/ecdsa.h" 3 4 int ECDSA_verify(int type, const unsigned char *dgst, int dgstlen, const unsigned char *sig, int siglen, EC_KEY *eckey) __attribute__((deprecated)); int ECDSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int ECDSA_set_ex_data(EC_KEY *d, int idx, void *arg) __attribute__((deprecated)); void *ECDSA_get_ex_data(EC_KEY *d, int idx) __attribute__((deprecated)); void ERR_load_ECDSA_strings(void) __attribute__((deprecated)); # 90 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/ecdh.h" 1 3 4 # 74 "/usr/include/openssl/ecdh.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 75 "/usr/include/openssl/ecdh.h" 2 3 4 # 90 "/usr/include/openssl/ecdh.h" 3 4 const ECDH_METHOD *ECDH_OpenSSL(void) __attribute__((deprecated)); void ECDH_set_default_method(const ECDH_METHOD *) __attribute__((deprecated)); const ECDH_METHOD *ECDH_get_default_method(void) __attribute__((deprecated)); int ECDH_set_method(EC_KEY *, const ECDH_METHOD *) __attribute__((deprecated)); int ECDH_compute_key(void *out, size_t outlen, const EC_POINT *pub_key, EC_KEY *ecdh, void *(*KDF)(const void *in, size_t inlen, void *out, size_t *outlen)) __attribute__((deprecated)); int ECDH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int ECDH_set_ex_data(EC_KEY *d, int idx, void *arg) __attribute__((deprecated)); void *ECDH_get_ex_data(EC_KEY *d, int idx) __attribute__((deprecated)); void ERR_load_ECDH_strings(void) __attribute__((deprecated)); # 94 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/rsa.h" 1 3 4 # 106 "/usr/include/openssl/rsa.h" 3 4 struct rsa_meth_st { const char *name; int (*rsa_pub_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int (*rsa_pub_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int (*rsa_priv_enc)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int (*rsa_priv_dec)(int flen,const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int (*rsa_mod_exp)(BIGNUM *r0,const BIGNUM *I,RSA *rsa,BN_CTX *ctx) __attribute__((deprecated)); int (*bn_mod_exp)(BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int (*init)(RSA *rsa) __attribute__((deprecated)); int (*finish)(RSA *rsa) __attribute__((deprecated)); int flags; char *app_data; int (*rsa_sign)(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, const RSA *rsa) __attribute__((deprecated)); int (*rsa_verify)(int dtype, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, const RSA *rsa) __attribute__((deprecated)); int (*rsa_keygen)(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb) __attribute__((deprecated)); }; struct rsa_st { int pad; long version; const RSA_METHOD *meth; ENGINE *engine; BIGNUM *n; BIGNUM *e; BIGNUM *d; BIGNUM *p; BIGNUM *q; BIGNUM *dmp1; BIGNUM *dmq1; BIGNUM *iqmp; CRYPTO_EX_DATA ex_data; int references; int flags; BN_MONT_CTX *_method_mod_n; BN_MONT_CTX *_method_mod_p; BN_MONT_CTX *_method_mod_q; char *bignum_data; BN_BLINDING *blinding; BN_BLINDING *mt_blinding; }; # 254 "/usr/include/openssl/rsa.h" 3 4 RSA * RSA_new(void) __attribute__((deprecated)); RSA * RSA_new_method(ENGINE *engine) __attribute__((deprecated)); int RSA_size(const RSA *) __attribute__((deprecated)); RSA * RSA_generate_key(int bits, unsigned long e,void (*callback)(int,int,void *),void *cb_arg) __attribute__((deprecated)); int RSA_generate_key_ex(RSA *rsa, int bits, BIGNUM *e, BN_GENCB *cb) __attribute__((deprecated)); int RSA_X931_derive_ex(RSA *rsa, BIGNUM *p1, BIGNUM *p2, BIGNUM *q1, BIGNUM *q2, const BIGNUM *Xp1, const BIGNUM *Xp2, const BIGNUM *Xp, const BIGNUM *Xq1, const BIGNUM *Xq2, const BIGNUM *Xq, const BIGNUM *e, BN_GENCB *cb) __attribute__((deprecated)); int RSA_X931_generate_key_ex(RSA *rsa, int bits, const BIGNUM *e, BN_GENCB *cb) __attribute__((deprecated)); int RSA_check_key(const RSA *) __attribute__((deprecated)); int RSA_public_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int RSA_private_encrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int RSA_public_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); int RSA_private_decrypt(int flen, const unsigned char *from, unsigned char *to, RSA *rsa,int padding) __attribute__((deprecated)); void RSA_free (RSA *r) __attribute__((deprecated)); int RSA_up_ref(RSA *r) __attribute__((deprecated)); int RSA_flags(const RSA *r) __attribute__((deprecated)); void RSA_set_default_method(const RSA_METHOD *meth) __attribute__((deprecated)); const RSA_METHOD *RSA_get_default_method(void) __attribute__((deprecated)); const RSA_METHOD *RSA_get_method(const RSA *rsa) __attribute__((deprecated)); int RSA_set_method(RSA *rsa, const RSA_METHOD *meth) __attribute__((deprecated)); int RSA_memory_lock(RSA *r) __attribute__((deprecated)); const RSA_METHOD *RSA_PKCS1_SSLeay(void) __attribute__((deprecated)); const RSA_METHOD *RSA_null_method(void) __attribute__((deprecated)); RSA *d2i_RSAPublicKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPublicKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPublicKey_it; RSA *d2i_RSAPrivateKey(RSA **a, const unsigned char **in, long len); int i2d_RSAPrivateKey(const RSA *a, unsigned char **out); extern const ASN1_ITEM RSAPrivateKey_it; int RSA_print_fp(FILE *fp, const RSA *r,int offset) __attribute__((deprecated)); int RSA_print(BIO *bp, const RSA *r,int offset) __attribute__((deprecated)); int i2d_RSA_NET(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey) __attribute__((deprecated)); RSA *d2i_RSA_NET(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify), int sgckey) __attribute__((deprecated)); int i2d_Netscape_RSA(const RSA *a, unsigned char **pp, int (*cb)(char *buf, int len, const char *prompt, int verify)) __attribute__((deprecated)); RSA *d2i_Netscape_RSA(RSA **a, const unsigned char **pp, long length, int (*cb)(char *buf, int len, const char *prompt, int verify)) __attribute__((deprecated)); int RSA_sign(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa) __attribute__((deprecated)); int RSA_verify(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa) __attribute__((deprecated)); int RSA_sign_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigret, unsigned int *siglen, RSA *rsa) __attribute__((deprecated)); int RSA_verify_ASN1_OCTET_STRING(int type, const unsigned char *m, unsigned int m_length, unsigned char *sigbuf, unsigned int siglen, RSA *rsa) __attribute__((deprecated)); int RSA_blinding_on(RSA *rsa, BN_CTX *ctx) __attribute__((deprecated)); void RSA_blinding_off(RSA *rsa) __attribute__((deprecated)); BN_BLINDING *RSA_setup_blinding(RSA *rsa, BN_CTX *ctx) __attribute__((deprecated)); int RSA_padding_add_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl) __attribute__((deprecated)); int RSA_padding_check_PKCS1_type_1(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len) __attribute__((deprecated)); int RSA_padding_add_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl) __attribute__((deprecated)); int RSA_padding_check_PKCS1_type_2(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len) __attribute__((deprecated)); int PKCS1_MGF1(unsigned char *mask, long len, const unsigned char *seed, long seedlen, const EVP_MD *dgst) __attribute__((deprecated)); int RSA_padding_add_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl, const unsigned char *p,int pl) __attribute__((deprecated)); int RSA_padding_check_PKCS1_OAEP(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len, const unsigned char *p,int pl) __attribute__((deprecated)); int RSA_padding_add_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl) __attribute__((deprecated)); int RSA_padding_check_SSLv23(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len) __attribute__((deprecated)); int RSA_padding_add_none(unsigned char *to,int tlen, const unsigned char *f,int fl) __attribute__((deprecated)); int RSA_padding_check_none(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len) __attribute__((deprecated)); int RSA_padding_add_X931(unsigned char *to,int tlen, const unsigned char *f,int fl) __attribute__((deprecated)); int RSA_padding_check_X931(unsigned char *to,int tlen, const unsigned char *f,int fl,int rsa_len) __attribute__((deprecated)); int RSA_X931_hash_id(int nid) __attribute__((deprecated)); int RSA_verify_PKCS1_PSS(RSA *rsa, const unsigned char *mHash, const EVP_MD *Hash, const unsigned char *EM, int sLen) __attribute__((deprecated)); int RSA_padding_add_PKCS1_PSS(RSA *rsa, unsigned char *EM, const unsigned char *mHash, const EVP_MD *Hash, int sLen) __attribute__((deprecated)); int RSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int RSA_set_ex_data(RSA *r,int idx,void *arg) __attribute__((deprecated)); void *RSA_get_ex_data(const RSA *r, int idx) __attribute__((deprecated)); RSA *RSAPublicKey_dup(RSA *rsa) __attribute__((deprecated)); RSA *RSAPrivateKey_dup(RSA *rsa) __attribute__((deprecated)); void ERR_load_RSA_strings(void) __attribute__((deprecated)); # 99 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/dsa.h" 1 3 4 # 70 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 71 "/usr/include/openssl/dsa.h" 2 3 4 # 85 "/usr/include/openssl/dsa.h" 3 4 # 1 "/usr/include/openssl/dh.h" 1 3 4 # 64 "/usr/include/openssl/dh.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/dh.h" 2 3 4 # 101 "/usr/include/openssl/dh.h" 3 4 struct dh_method { const char *name; int (*generate_key)(DH *dh) __attribute__((deprecated)); int (*compute_key)(unsigned char *key,const BIGNUM *pub_key,DH *dh) __attribute__((deprecated)); int (*bn_mod_exp)(const DH *dh, BIGNUM *r, const BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int (*init)(DH *dh) __attribute__((deprecated)); int (*finish)(DH *dh) __attribute__((deprecated)); int flags; char *app_data; int (*generate_params)(DH *dh, int prime_len, int generator, BN_GENCB *cb) __attribute__((deprecated)); }; struct dh_st { int pad; int version; BIGNUM *p; BIGNUM *g; long length; BIGNUM *pub_key; BIGNUM *priv_key; int flags; BN_MONT_CTX *method_mont_p; BIGNUM *q; BIGNUM *j; unsigned char *seed; int seedlen; BIGNUM *counter; int references; CRYPTO_EX_DATA ex_data; const DH_METHOD *meth; ENGINE *engine; }; # 172 "/usr/include/openssl/dh.h" 3 4 const DH_METHOD *DH_OpenSSL(void) __attribute__((deprecated)); void DH_set_default_method(const DH_METHOD *meth) __attribute__((deprecated)); const DH_METHOD *DH_get_default_method(void) __attribute__((deprecated)); int DH_set_method(DH *dh, const DH_METHOD *meth) __attribute__((deprecated)); DH *DH_new_method(ENGINE *engine) __attribute__((deprecated)); DH * DH_new(void) __attribute__((deprecated)); void DH_free(DH *dh) __attribute__((deprecated)); int DH_up_ref(DH *dh) __attribute__((deprecated)); int DH_size(const DH *dh) __attribute__((deprecated)); int DH_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int DH_set_ex_data(DH *d, int idx, void *arg) __attribute__((deprecated)); void *DH_get_ex_data(DH *d, int idx) __attribute__((deprecated)); DH * DH_generate_parameters(int prime_len,int generator, void (*callback)(int,int,void *),void *cb_arg) __attribute__((deprecated)); int DH_generate_parameters_ex(DH *dh, int prime_len,int generator, BN_GENCB *cb) __attribute__((deprecated)); int DH_check(const DH *dh,int *codes) __attribute__((deprecated)); int DH_check_pub_key(const DH *dh,const BIGNUM *pub_key, int *codes) __attribute__((deprecated)); int DH_generate_key(DH *dh) __attribute__((deprecated)); int DH_compute_key(unsigned char *key,const BIGNUM *pub_key,DH *dh) __attribute__((deprecated)); DH * d2i_DHparams(DH **a,const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_DHparams(const DH *a,unsigned char **pp) __attribute__((deprecated)); int DHparams_print_fp(FILE *fp, const DH *x) __attribute__((deprecated)); int DHparams_print(BIO *bp, const DH *x) __attribute__((deprecated)); # 221 "/usr/include/openssl/dh.h" 3 4 void ERR_load_DH_strings(void) __attribute__((deprecated)); # 86 "/usr/include/openssl/dsa.h" 2 3 4 # 131 "/usr/include/openssl/dsa.h" 3 4 typedef struct DSA_SIG_st { BIGNUM *r; BIGNUM *s; } DSA_SIG; struct dsa_method { const char *name; DSA_SIG * (*dsa_do_sign)(const unsigned char *dgst, int dlen, DSA *dsa) __attribute__((deprecated)); int (*dsa_sign_setup)(DSA *dsa, BN_CTX *ctx_in, BIGNUM **kinvp, BIGNUM **rp) __attribute__((deprecated)); int (*dsa_do_verify)(const unsigned char *dgst, int dgst_len, DSA_SIG *sig, DSA *dsa) __attribute__((deprecated)); int (*dsa_mod_exp)(DSA *dsa, BIGNUM *rr, BIGNUM *a1, BIGNUM *p1, BIGNUM *a2, BIGNUM *p2, BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *in_mont) __attribute__((deprecated)); int (*bn_mod_exp)(DSA *dsa, BIGNUM *r, BIGNUM *a, const BIGNUM *p, const BIGNUM *m, BN_CTX *ctx, BN_MONT_CTX *m_ctx) __attribute__((deprecated)); int (*init)(DSA *dsa) __attribute__((deprecated)); int (*finish)(DSA *dsa) __attribute__((deprecated)); int flags; char *app_data; int (*dsa_paramgen)(DSA *dsa, int bits, unsigned char *seed, int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb) __attribute__((deprecated)); int (*dsa_keygen)(DSA *dsa) __attribute__((deprecated)); }; struct dsa_st { int pad; long version; int write_params; BIGNUM *p; BIGNUM *q; BIGNUM *g; BIGNUM *pub_key; BIGNUM *priv_key; BIGNUM *kinv; BIGNUM *r; int flags; BN_MONT_CTX *method_mont_p; int references; CRYPTO_EX_DATA ex_data; const DSA_METHOD *meth; ENGINE *engine; }; # 200 "/usr/include/openssl/dsa.h" 3 4 DSA_SIG * DSA_SIG_new(void) __attribute__((deprecated)); void DSA_SIG_free(DSA_SIG *a) __attribute__((deprecated)); int i2d_DSA_SIG(const DSA_SIG *a, unsigned char **pp) __attribute__((deprecated)); DSA_SIG * d2i_DSA_SIG(DSA_SIG **v, const unsigned char **pp, long length) __attribute__((deprecated)); DSA_SIG * DSA_do_sign(const unsigned char *dgst,int dlen,DSA *dsa) __attribute__((deprecated)); int DSA_do_verify(const unsigned char *dgst,int dgst_len, DSA_SIG *sig,DSA *dsa) __attribute__((deprecated)); const DSA_METHOD *DSA_OpenSSL(void) __attribute__((deprecated)); void DSA_set_default_method(const DSA_METHOD *) __attribute__((deprecated)); const DSA_METHOD *DSA_get_default_method(void) __attribute__((deprecated)); int DSA_set_method(DSA *dsa, const DSA_METHOD *) __attribute__((deprecated)); DSA * DSA_new(void) __attribute__((deprecated)); DSA * DSA_new_method(ENGINE *engine) __attribute__((deprecated)); void DSA_free (DSA *r) __attribute__((deprecated)); int DSA_up_ref(DSA *r) __attribute__((deprecated)); int DSA_size(const DSA *) __attribute__((deprecated)); int DSA_sign_setup( DSA *dsa,BN_CTX *ctx_in,BIGNUM **kinvp,BIGNUM **rp) __attribute__((deprecated)); int DSA_sign(int type,const unsigned char *dgst,int dlen, unsigned char *sig, unsigned int *siglen, DSA *dsa) __attribute__((deprecated)); int DSA_verify(int type,const unsigned char *dgst,int dgst_len, const unsigned char *sigbuf, int siglen, DSA *dsa) __attribute__((deprecated)); int DSA_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int DSA_set_ex_data(DSA *d, int idx, void *arg) __attribute__((deprecated)); void *DSA_get_ex_data(DSA *d, int idx) __attribute__((deprecated)); DSA * d2i_DSAPublicKey(DSA **a, const unsigned char **pp, long length) __attribute__((deprecated)); DSA * d2i_DSAPrivateKey(DSA **a, const unsigned char **pp, long length) __attribute__((deprecated)); DSA * d2i_DSAparams(DSA **a, const unsigned char **pp, long length) __attribute__((deprecated)); DSA * DSA_generate_parameters(int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret,void (*callback)(int, int, void *),void *cb_arg) __attribute__((deprecated)); int DSA_generate_parameters_ex(DSA *dsa, int bits, unsigned char *seed,int seed_len, int *counter_ret, unsigned long *h_ret, BN_GENCB *cb) __attribute__((deprecated)); int DSA_generate_key(DSA *a) __attribute__((deprecated)); int i2d_DSAPublicKey(const DSA *a, unsigned char **pp) __attribute__((deprecated)); int i2d_DSAPrivateKey(const DSA *a, unsigned char **pp) __attribute__((deprecated)); int i2d_DSAparams(const DSA *a,unsigned char **pp) __attribute__((deprecated)); int DSAparams_print(BIO *bp, const DSA *x) __attribute__((deprecated)); int DSA_print(BIO *bp, const DSA *x, int off) __attribute__((deprecated)); int DSAparams_print_fp(FILE *fp, const DSA *x) __attribute__((deprecated)); int DSA_print_fp(FILE *bp, const DSA *x, int off) __attribute__((deprecated)); # 277 "/usr/include/openssl/dsa.h" 3 4 DH *DSA_dup_DH(const DSA *r) __attribute__((deprecated)); # 289 "/usr/include/openssl/dsa.h" 3 4 void ERR_load_DSA_strings(void) __attribute__((deprecated)); # 102 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/sha.h" 1 3 4 # 64 "/usr/include/openssl/sha.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/sha.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stddef.h" 1 3 4 # 66 "/usr/include/openssl/sha.h" 2 3 4 # 102 "/usr/include/openssl/sha.h" 3 4 typedef struct SHAstate_st { unsigned int h0,h1,h2,h3,h4; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num; } SHA_CTX; int SHA_Init(SHA_CTX *c) __attribute__((deprecated)); int SHA_Update(SHA_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA_Final(unsigned char *md, SHA_CTX *c) __attribute__((deprecated)); unsigned char *SHA(const unsigned char *d, size_t n, unsigned char *md) __attribute__((deprecated)); void SHA_Transform(SHA_CTX *c, const unsigned char *data) __attribute__((deprecated)); int SHA1_Init(SHA_CTX *c) __attribute__((deprecated)); int SHA1_Update(SHA_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA1_Final(unsigned char *md, SHA_CTX *c) __attribute__((deprecated)); unsigned char *SHA1(const unsigned char *d, size_t n, unsigned char *md) __attribute__((deprecated)); void SHA1_Transform(SHA_CTX *c, const unsigned char *data) __attribute__((deprecated)); # 134 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA256state_st { unsigned int h[8]; unsigned int Nl,Nh; unsigned int data[16]; unsigned int num,md_len; } SHA256_CTX; int SHA224_Init(SHA256_CTX *c) __attribute__((deprecated)); int SHA224_Update(SHA256_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA224_Final(unsigned char *md, SHA256_CTX *c) __attribute__((deprecated)); unsigned char *SHA224(const unsigned char *d, size_t n,unsigned char *md) __attribute__((deprecated)); int SHA256_Init(SHA256_CTX *c) __attribute__((deprecated)); int SHA256_Update(SHA256_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA256_Final(unsigned char *md, SHA256_CTX *c) __attribute__((deprecated)); unsigned char *SHA256(const unsigned char *d, size_t n,unsigned char *md) __attribute__((deprecated)); void SHA256_Transform(SHA256_CTX *c, const unsigned char *data) __attribute__((deprecated)); # 177 "/usr/include/openssl/sha.h" 3 4 typedef struct SHA512state_st { unsigned long long h[8]; unsigned long long Nl,Nh; union { unsigned long long d[16]; unsigned char p[(16*8)]; } u; unsigned int num,md_len; } SHA512_CTX; int SHA384_Init(SHA512_CTX *c) __attribute__((deprecated)); int SHA384_Update(SHA512_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA384_Final(unsigned char *md, SHA512_CTX *c) __attribute__((deprecated)); unsigned char *SHA384(const unsigned char *d, size_t n,unsigned char *md) __attribute__((deprecated)); int SHA512_Init(SHA512_CTX *c) __attribute__((deprecated)); int SHA512_Update(SHA512_CTX *c, const void *data, size_t len) __attribute__((deprecated)); int SHA512_Final(unsigned char *md, SHA512_CTX *c) __attribute__((deprecated)); unsigned char *SHA512(const unsigned char *d, size_t n,unsigned char *md) __attribute__((deprecated)); void SHA512_Transform(SHA512_CTX *c, const unsigned char *data) __attribute__((deprecated)); # 110 "/usr/include/openssl/x509.h" 2 3 4 # 139 "/usr/include/openssl/x509.h" 3 4 typedef struct X509_objects_st { int nid; int (*a2i)(void) __attribute__((deprecated)); int (*i2a)(void) __attribute__((deprecated)); } X509_OBJECTS; struct X509_algor_st { ASN1_OBJECT *algorithm; ASN1_TYPE *parameter; } ; typedef STACK X509_ALGORS; typedef struct X509_val_st { ASN1_TIME *notBefore; ASN1_TIME *notAfter; } X509_VAL; typedef struct X509_pubkey_st { X509_ALGOR *algor; ASN1_BIT_STRING *public_key; EVP_PKEY *pkey; } X509_PUBKEY; typedef struct X509_sig_st { X509_ALGOR *algor; ASN1_OCTET_STRING *digest; } X509_SIG; typedef struct X509_name_entry_st { ASN1_OBJECT *object; ASN1_STRING *value; int set; int size; } X509_NAME_ENTRY; struct X509_name_st { STACK *entries; int modified; BUF_MEM *bytes; unsigned long hash; } ; typedef struct X509_extension_st { ASN1_OBJECT *object; ASN1_BOOLEAN critical; ASN1_OCTET_STRING *value; } X509_EXTENSION; typedef STACK X509_EXTENSIONS; typedef struct x509_attributes_st { ASN1_OBJECT *object; int single; union { char *ptr; STACK *set; ASN1_TYPE *single; } value; } X509_ATTRIBUTE; typedef struct X509_req_info_st { ASN1_ENCODING enc; ASN1_INTEGER *version; X509_NAME *subject; X509_PUBKEY *pubkey; STACK *attributes; } X509_REQ_INFO; typedef struct X509_req_st { X509_REQ_INFO *req_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } X509_REQ; typedef struct x509_cinf_st { ASN1_INTEGER *version; ASN1_INTEGER *serialNumber; X509_ALGOR *signature; X509_NAME *issuer; X509_VAL *validity; X509_NAME *subject; X509_PUBKEY *key; ASN1_BIT_STRING *issuerUID; ASN1_BIT_STRING *subjectUID; STACK *extensions; ASN1_ENCODING enc; } X509_CINF; typedef struct x509_cert_aux_st { STACK *trust; STACK *reject; ASN1_UTF8STRING *alias; ASN1_OCTET_STRING *keyid; STACK *other; } X509_CERT_AUX; struct x509_st { X509_CINF *cert_info; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int valid; int references; char *name; CRYPTO_EX_DATA ex_data; long ex_pathlen; long ex_pcpathlen; unsigned long ex_flags; unsigned long ex_kusage; unsigned long ex_xkusage; unsigned long ex_nscert; ASN1_OCTET_STRING *skid; struct AUTHORITY_KEYID_st *akid; X509_POLICY_CACHE *policy_cache; unsigned char sha1_hash[20]; X509_CERT_AUX *aux; } ; typedef struct x509_trust_st { int trust; int flags; int (*check_trust)(struct x509_trust_st *, X509 *, int) __attribute__((deprecated)); char *name; int arg1; void *arg2; } X509_TRUST; typedef struct x509_cert_pair_st { X509 *forward; X509 *reverse; } X509_CERT_PAIR; # 430 "/usr/include/openssl/x509.h" 3 4 typedef struct X509_revoked_st { ASN1_INTEGER *serialNumber; ASN1_TIME *revocationDate; STACK *extensions; int sequence; } X509_REVOKED; typedef struct X509_crl_info_st { ASN1_INTEGER *version; X509_ALGOR *sig_alg; X509_NAME *issuer; ASN1_TIME *lastUpdate; ASN1_TIME *nextUpdate; STACK *revoked; STACK *extensions; ASN1_ENCODING enc; } X509_CRL_INFO; struct X509_crl_st { X509_CRL_INFO *crl; X509_ALGOR *sig_alg; ASN1_BIT_STRING *signature; int references; } ; typedef struct private_key_st { int version; X509_ALGOR *enc_algor; ASN1_OCTET_STRING *enc_pkey; EVP_PKEY *dec_pkey; int key_length; char *key_data; int key_free; EVP_CIPHER_INFO cipher; int references; } X509_PKEY; typedef struct X509_info_st { X509 *x509; X509_CRL *crl; X509_PKEY *x_pkey; EVP_CIPHER_INFO enc_cipher; int enc_len; char *enc_data; int references; } X509_INFO; typedef struct Netscape_spkac_st { X509_PUBKEY *pubkey; ASN1_IA5STRING *challenge; } NETSCAPE_SPKAC; typedef struct Netscape_spki_st { NETSCAPE_SPKAC *spkac; X509_ALGOR *sig_algor; ASN1_BIT_STRING *signature; } NETSCAPE_SPKI; typedef struct Netscape_certificate_sequence { ASN1_OBJECT *type; STACK *certs; } NETSCAPE_CERT_SEQUENCE; # 536 "/usr/include/openssl/x509.h" 3 4 typedef struct PBEPARAM_st { ASN1_OCTET_STRING *salt; ASN1_INTEGER *iter; } PBEPARAM; typedef struct PBE2PARAM_st { X509_ALGOR *keyfunc; X509_ALGOR *encryption; } PBE2PARAM; typedef struct PBKDF2PARAM_st { ASN1_TYPE *salt; ASN1_INTEGER *iter; ASN1_INTEGER *keylength; X509_ALGOR *prf; } PBKDF2PARAM; typedef struct pkcs8_priv_key_info_st { int broken; ASN1_INTEGER *version; X509_ALGOR *pkeyalg; ASN1_TYPE *pkey; STACK *attributes; } PKCS8_PRIV_KEY_INFO; # 1 "/usr/include/openssl/x509_vfy.h" 1 3 4 # 70 "/usr/include/openssl/x509_vfy.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 71 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 1 "/usr/include/openssl/lhash.h" 1 3 4 # 68 "/usr/include/openssl/lhash.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 69 "/usr/include/openssl/lhash.h" 2 3 4 # 81 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_node_st { void *data; struct lhash_node_st *next; unsigned long hash; } LHASH_NODE; typedef int (*LHASH_COMP_FN_TYPE)(const void *, const void *); typedef unsigned long (*LHASH_HASH_FN_TYPE)(const void *); typedef void (*LHASH_DOALL_FN_TYPE)(void *); typedef void (*LHASH_DOALL_ARG_FN_TYPE)(void *, void *); # 140 "/usr/include/openssl/lhash.h" 3 4 typedef struct lhash_st { LHASH_NODE **b; LHASH_COMP_FN_TYPE comp; LHASH_HASH_FN_TYPE hash; unsigned int num_nodes; unsigned int num_alloc_nodes; unsigned int p; unsigned int pmax; unsigned long up_load; unsigned long down_load; unsigned long num_items; unsigned long num_expands; unsigned long num_expand_reallocs; unsigned long num_contracts; unsigned long num_contract_reallocs; unsigned long num_hash_calls; unsigned long num_comp_calls; unsigned long num_insert; unsigned long num_replace; unsigned long num_delete; unsigned long num_no_delete; unsigned long num_retrieve; unsigned long num_retrieve_miss; unsigned long num_hash_comps; int error; } LHASH; LHASH *lh_new(LHASH_HASH_FN_TYPE h, LHASH_COMP_FN_TYPE c) __attribute__((deprecated)); void lh_free(LHASH *lh) __attribute__((deprecated)); void *lh_insert(LHASH *lh, void *data) __attribute__((deprecated)); void *lh_delete(LHASH *lh, const void *data) __attribute__((deprecated)); void *lh_retrieve(LHASH *lh, const void *data) __attribute__((deprecated)); void lh_doall(LHASH *lh, LHASH_DOALL_FN_TYPE func) __attribute__((deprecated)); void lh_doall_arg(LHASH *lh, LHASH_DOALL_ARG_FN_TYPE func, void *arg) __attribute__((deprecated)); unsigned long lh_strhash(const char *c) __attribute__((deprecated)); unsigned long lh_num_items(const LHASH *lh) __attribute__((deprecated)); void lh_stats(const LHASH *lh, FILE *out) __attribute__((deprecated)); void lh_node_stats(const LHASH *lh, FILE *out) __attribute__((deprecated)); void lh_node_usage_stats(const LHASH *lh, FILE *out) __attribute__((deprecated)); void lh_stats_bio(const LHASH *lh, BIO *out) __attribute__((deprecated)); void lh_node_stats_bio(const LHASH *lh, BIO *out) __attribute__((deprecated)); void lh_node_usage_stats_bio(const LHASH *lh, BIO *out) __attribute__((deprecated)); # 73 "/usr/include/openssl/x509_vfy.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 77 "/usr/include/openssl/x509_vfy.h" 2 3 4 typedef struct x509_hash_dir_st { int num_dirs; char **dirs; int *dirs_type; int num_dirs_alloced; } X509_HASH_DIR_CTX; typedef struct x509_file_st { int num_paths; int num_alloced; char **paths; int *path_type; } X509_CERT_FILE_CTX; # 123 "/usr/include/openssl/x509_vfy.h" 3 4 typedef struct x509_object_st { int type; union { char *ptr; X509 *x509; X509_CRL *crl; EVP_PKEY *pkey; } data; } X509_OBJECT; typedef struct x509_lookup_st X509_LOOKUP; typedef struct x509_lookup_method_st { const char *name; int (*new_item)(X509_LOOKUP *ctx) __attribute__((deprecated)); void (*free)(X509_LOOKUP *ctx) __attribute__((deprecated)); int (*init)(X509_LOOKUP *ctx) __attribute__((deprecated)); int (*shutdown)(X509_LOOKUP *ctx) __attribute__((deprecated)); int (*ctrl)(X509_LOOKUP *ctx,int cmd,const char *argc,long argl, char **ret) __attribute__((deprecated)); int (*get_by_subject)(X509_LOOKUP *ctx,int type,X509_NAME *name, X509_OBJECT *ret) __attribute__((deprecated)); int (*get_by_issuer_serial)(X509_LOOKUP *ctx,int type,X509_NAME *name, ASN1_INTEGER *serial,X509_OBJECT *ret) __attribute__((deprecated)); int (*get_by_fingerprint)(X509_LOOKUP *ctx,int type, unsigned char *bytes,int len, X509_OBJECT *ret) __attribute__((deprecated)); int (*get_by_alias)(X509_LOOKUP *ctx,int type,char *str,int len, X509_OBJECT *ret) __attribute__((deprecated)); } X509_LOOKUP_METHOD; typedef struct X509_VERIFY_PARAM_st { char *name; time_t check_time; unsigned long inh_flags; unsigned long flags; int purpose; int trust; int depth; STACK *policies; } X509_VERIFY_PARAM; struct x509_store_st { int cache; STACK *objs; STACK *get_cert_methods; X509_VERIFY_PARAM *param; int (*verify)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*verify_cb)(int ok,X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x) __attribute__((deprecated)); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer) __attribute__((deprecated)); int (*check_revocation)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x) __attribute__((deprecated)); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl) __attribute__((deprecated)); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x) __attribute__((deprecated)); int (*cleanup)(X509_STORE_CTX *ctx) __attribute__((deprecated)); CRYPTO_EX_DATA ex_data; int references; } ; int X509_STORE_set_depth(X509_STORE *store, int depth) __attribute__((deprecated)); struct x509_lookup_st { int init; int skip; X509_LOOKUP_METHOD *method; char *method_data; X509_STORE *store_ctx; } ; struct x509_store_ctx_st { X509_STORE *ctx; int current_method; X509 *cert; STACK *untrusted; STACK *crls; X509_VERIFY_PARAM *param; void *other_ctx; int (*verify)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*verify_cb)(int ok,X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*get_issuer)(X509 **issuer, X509_STORE_CTX *ctx, X509 *x) __attribute__((deprecated)); int (*check_issued)(X509_STORE_CTX *ctx, X509 *x, X509 *issuer) __attribute__((deprecated)); int (*check_revocation)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*get_crl)(X509_STORE_CTX *ctx, X509_CRL **crl, X509 *x) __attribute__((deprecated)); int (*check_crl)(X509_STORE_CTX *ctx, X509_CRL *crl) __attribute__((deprecated)); int (*cert_crl)(X509_STORE_CTX *ctx, X509_CRL *crl, X509 *x) __attribute__((deprecated)); int (*check_policy)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int (*cleanup)(X509_STORE_CTX *ctx) __attribute__((deprecated)); int valid; int last_untrusted; STACK *chain; X509_POLICY_TREE *tree; int explicit_policy; int error_depth; int error; X509 *current_cert; X509 *current_issuer; X509_CRL *current_crl; CRYPTO_EX_DATA ex_data; } ; void X509_STORE_CTX_set_depth(X509_STORE_CTX *ctx, int depth) __attribute__((deprecated)); # 383 "/usr/include/openssl/x509_vfy.h" 3 4 int X509_OBJECT_idx_by_subject(STACK *h, int type, X509_NAME *name) __attribute__((deprecated)); X509_OBJECT *X509_OBJECT_retrieve_by_subject(STACK *h,int type,X509_NAME *name) __attribute__((deprecated)); X509_OBJECT *X509_OBJECT_retrieve_match(STACK *h, X509_OBJECT *x) __attribute__((deprecated)); void X509_OBJECT_up_ref_count(X509_OBJECT *a) __attribute__((deprecated)); void X509_OBJECT_free_contents(X509_OBJECT *a) __attribute__((deprecated)); X509_STORE *X509_STORE_new(void ) __attribute__((deprecated)); void X509_STORE_free(X509_STORE *v) __attribute__((deprecated)); int X509_STORE_set_flags(X509_STORE *ctx, unsigned long flags) __attribute__((deprecated)); int X509_STORE_set_purpose(X509_STORE *ctx, int purpose) __attribute__((deprecated)); int X509_STORE_set_trust(X509_STORE *ctx, int trust) __attribute__((deprecated)); int X509_STORE_set1_param(X509_STORE *ctx, X509_VERIFY_PARAM *pm) __attribute__((deprecated)); X509_STORE_CTX *X509_STORE_CTX_new(void) __attribute__((deprecated)); int X509_STORE_CTX_get1_issuer(X509 **issuer, X509_STORE_CTX *ctx, X509 *x) __attribute__((deprecated)); void X509_STORE_CTX_free(X509_STORE_CTX *ctx) __attribute__((deprecated)); int X509_STORE_CTX_init(X509_STORE_CTX *ctx, X509_STORE *store, X509 *x509, STACK *chain) __attribute__((deprecated)); void X509_STORE_CTX_trusted_stack(X509_STORE_CTX *ctx, STACK *sk) __attribute__((deprecated)); void X509_STORE_CTX_cleanup(X509_STORE_CTX *ctx) __attribute__((deprecated)); X509_LOOKUP *X509_STORE_add_lookup(X509_STORE *v, X509_LOOKUP_METHOD *m) __attribute__((deprecated)); X509_LOOKUP_METHOD *X509_LOOKUP_hash_dir(void) __attribute__((deprecated)); X509_LOOKUP_METHOD *X509_LOOKUP_file(void) __attribute__((deprecated)); int X509_STORE_add_cert(X509_STORE *ctx, X509 *x) __attribute__((deprecated)); int X509_STORE_add_crl(X509_STORE *ctx, X509_CRL *x) __attribute__((deprecated)); int X509_STORE_get_by_subject(X509_STORE_CTX *vs,int type,X509_NAME *name, X509_OBJECT *ret) __attribute__((deprecated)); int X509_LOOKUP_ctrl(X509_LOOKUP *ctx, int cmd, const char *argc, long argl, char **ret) __attribute__((deprecated)); int X509_load_cert_file(X509_LOOKUP *ctx, const char *file, int type) __attribute__((deprecated)); int X509_load_crl_file(X509_LOOKUP *ctx, const char *file, int type) __attribute__((deprecated)); int X509_load_cert_crl_file(X509_LOOKUP *ctx, const char *file, int type) __attribute__((deprecated)); X509_LOOKUP *X509_LOOKUP_new(X509_LOOKUP_METHOD *method) __attribute__((deprecated)); void X509_LOOKUP_free(X509_LOOKUP *ctx) __attribute__((deprecated)); int X509_LOOKUP_init(X509_LOOKUP *ctx) __attribute__((deprecated)); int X509_LOOKUP_by_subject(X509_LOOKUP *ctx, int type, X509_NAME *name, X509_OBJECT *ret) __attribute__((deprecated)); int X509_LOOKUP_by_issuer_serial(X509_LOOKUP *ctx, int type, X509_NAME *name, ASN1_INTEGER *serial, X509_OBJECT *ret) __attribute__((deprecated)); int X509_LOOKUP_by_fingerprint(X509_LOOKUP *ctx, int type, unsigned char *bytes, int len, X509_OBJECT *ret) __attribute__((deprecated)); int X509_LOOKUP_by_alias(X509_LOOKUP *ctx, int type, char *str, int len, X509_OBJECT *ret) __attribute__((deprecated)); int X509_LOOKUP_shutdown(X509_LOOKUP *ctx) __attribute__((deprecated)); int X509_STORE_load_locations (X509_STORE *ctx, const char *file, const char *dir) __attribute__((deprecated)); int X509_STORE_set_default_paths(X509_STORE *ctx) __attribute__((deprecated)); int X509_STORE_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int X509_STORE_CTX_set_ex_data(X509_STORE_CTX *ctx,int idx,void *data) __attribute__((deprecated)); void * X509_STORE_CTX_get_ex_data(X509_STORE_CTX *ctx,int idx) __attribute__((deprecated)); int X509_STORE_CTX_get_error(X509_STORE_CTX *ctx) __attribute__((deprecated)); void X509_STORE_CTX_set_error(X509_STORE_CTX *ctx,int s) __attribute__((deprecated)); int X509_STORE_CTX_get_error_depth(X509_STORE_CTX *ctx) __attribute__((deprecated)); X509 * X509_STORE_CTX_get_current_cert(X509_STORE_CTX *ctx) __attribute__((deprecated)); STACK *X509_STORE_CTX_get_chain(X509_STORE_CTX *ctx) __attribute__((deprecated)); STACK *X509_STORE_CTX_get1_chain(X509_STORE_CTX *ctx) __attribute__((deprecated)); void X509_STORE_CTX_set_cert(X509_STORE_CTX *c,X509 *x) __attribute__((deprecated)); void X509_STORE_CTX_set_chain(X509_STORE_CTX *c,STACK *sk) __attribute__((deprecated)); void X509_STORE_CTX_set0_crls(X509_STORE_CTX *c,STACK *sk) __attribute__((deprecated)); int X509_STORE_CTX_set_purpose(X509_STORE_CTX *ctx, int purpose) __attribute__((deprecated)); int X509_STORE_CTX_set_trust(X509_STORE_CTX *ctx, int trust) __attribute__((deprecated)); int X509_STORE_CTX_purpose_inherit(X509_STORE_CTX *ctx, int def_purpose, int purpose, int trust) __attribute__((deprecated)); void X509_STORE_CTX_set_flags(X509_STORE_CTX *ctx, unsigned long flags) __attribute__((deprecated)); void X509_STORE_CTX_set_time(X509_STORE_CTX *ctx, unsigned long flags, time_t t) __attribute__((deprecated)); void X509_STORE_CTX_set_verify_cb(X509_STORE_CTX *ctx, int (*verify_cb)(int, X509_STORE_CTX *)) __attribute__((deprecated)); X509_POLICY_TREE *X509_STORE_CTX_get0_policy_tree(X509_STORE_CTX *ctx) __attribute__((deprecated)); int X509_STORE_CTX_get_explicit_policy(X509_STORE_CTX *ctx) __attribute__((deprecated)); X509_VERIFY_PARAM *X509_STORE_CTX_get0_param(X509_STORE_CTX *ctx) __attribute__((deprecated)); void X509_STORE_CTX_set0_param(X509_STORE_CTX *ctx, X509_VERIFY_PARAM *param) __attribute__((deprecated)); int X509_STORE_CTX_set_default(X509_STORE_CTX *ctx, const char *name) __attribute__((deprecated)); X509_VERIFY_PARAM *X509_VERIFY_PARAM_new(void) __attribute__((deprecated)); void X509_VERIFY_PARAM_free(X509_VERIFY_PARAM *param) __attribute__((deprecated)); int X509_VERIFY_PARAM_inherit(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from) __attribute__((deprecated)); int X509_VERIFY_PARAM_set1(X509_VERIFY_PARAM *to, const X509_VERIFY_PARAM *from) __attribute__((deprecated)); int X509_VERIFY_PARAM_set1_name(X509_VERIFY_PARAM *param, const char *name) __attribute__((deprecated)); int X509_VERIFY_PARAM_set_flags(X509_VERIFY_PARAM *param, unsigned long flags) __attribute__((deprecated)); int X509_VERIFY_PARAM_clear_flags(X509_VERIFY_PARAM *param, unsigned long flags) __attribute__((deprecated)); unsigned long X509_VERIFY_PARAM_get_flags(X509_VERIFY_PARAM *param) __attribute__((deprecated)); int X509_VERIFY_PARAM_set_purpose(X509_VERIFY_PARAM *param, int purpose) __attribute__((deprecated)); int X509_VERIFY_PARAM_set_trust(X509_VERIFY_PARAM *param, int trust) __attribute__((deprecated)); void X509_VERIFY_PARAM_set_depth(X509_VERIFY_PARAM *param, int depth) __attribute__((deprecated)); void X509_VERIFY_PARAM_set_time(X509_VERIFY_PARAM *param, time_t t) __attribute__((deprecated)); int X509_VERIFY_PARAM_add0_policy(X509_VERIFY_PARAM *param, ASN1_OBJECT *policy) __attribute__((deprecated)); int X509_VERIFY_PARAM_set1_policies(X509_VERIFY_PARAM *param, STACK *policies) __attribute__((deprecated)); int X509_VERIFY_PARAM_get_depth(const X509_VERIFY_PARAM *param) __attribute__((deprecated)); int X509_VERIFY_PARAM_add0_table(X509_VERIFY_PARAM *param) __attribute__((deprecated)); const X509_VERIFY_PARAM *X509_VERIFY_PARAM_lookup(const char *name) __attribute__((deprecated)); void X509_VERIFY_PARAM_table_cleanup(void) __attribute__((deprecated)); int X509_policy_check(X509_POLICY_TREE **ptree, int *pexplicit_policy, STACK *certs, STACK *policy_oids, unsigned int flags) __attribute__((deprecated)); void X509_policy_tree_free(X509_POLICY_TREE *tree) __attribute__((deprecated)); int X509_policy_tree_level_count(const X509_POLICY_TREE *tree) __attribute__((deprecated)); X509_POLICY_LEVEL * X509_policy_tree_get0_level(const X509_POLICY_TREE *tree, int i) __attribute__((deprecated)); STACK * X509_policy_tree_get0_policies(const X509_POLICY_TREE *tree) __attribute__((deprecated)); STACK * X509_policy_tree_get0_user_policies(const X509_POLICY_TREE *tree) __attribute__((deprecated)); int X509_policy_level_node_count(X509_POLICY_LEVEL *level) __attribute__((deprecated)); X509_POLICY_NODE *X509_policy_level_get0_node(X509_POLICY_LEVEL *level, int i) __attribute__((deprecated)); const ASN1_OBJECT *X509_policy_node_get0_policy(const X509_POLICY_NODE *node) __attribute__((deprecated)); STACK * X509_policy_node_get0_qualifiers(const X509_POLICY_NODE *node) __attribute__((deprecated)); const X509_POLICY_NODE * X509_policy_node_get0_parent(const X509_POLICY_NODE *node) __attribute__((deprecated)); # 576 "/usr/include/openssl/x509.h" 2 3 4 # 1 "/usr/include/openssl/pkcs7.h" 1 3 4 # 66 "/usr/include/openssl/pkcs7.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 67 "/usr/include/openssl/pkcs7.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 69 "/usr/include/openssl/pkcs7.h" 2 3 4 # 88 "/usr/include/openssl/pkcs7.h" 3 4 typedef struct pkcs7_issuer_and_serial_st { X509_NAME *issuer; ASN1_INTEGER *serial; } PKCS7_ISSUER_AND_SERIAL; typedef struct pkcs7_signer_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *digest_alg; STACK *auth_attr; X509_ALGOR *digest_enc_alg; ASN1_OCTET_STRING *enc_digest; STACK *unauth_attr; EVP_PKEY *pkey; } PKCS7_SIGNER_INFO; typedef struct pkcs7_recip_info_st { ASN1_INTEGER *version; PKCS7_ISSUER_AND_SERIAL *issuer_and_serial; X509_ALGOR *key_enc_algor; ASN1_OCTET_STRING *enc_key; X509 *cert; } PKCS7_RECIP_INFO; typedef struct pkcs7_signed_st { ASN1_INTEGER *version; STACK *md_algs; STACK *cert; STACK *crl; STACK *signer_info; struct pkcs7_st *contents; } PKCS7_SIGNED; typedef struct pkcs7_enc_content_st { ASN1_OBJECT *content_type; X509_ALGOR *algorithm; ASN1_OCTET_STRING *enc_data; const EVP_CIPHER *cipher; } PKCS7_ENC_CONTENT; typedef struct pkcs7_enveloped_st { ASN1_INTEGER *version; STACK *recipientinfo; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENVELOPE; typedef struct pkcs7_signedandenveloped_st { ASN1_INTEGER *version; STACK *md_algs; STACK *cert; STACK *crl; STACK *signer_info; PKCS7_ENC_CONTENT *enc_data; STACK *recipientinfo; } PKCS7_SIGN_ENVELOPE; typedef struct pkcs7_digest_st { ASN1_INTEGER *version; X509_ALGOR *md; struct pkcs7_st *contents; ASN1_OCTET_STRING *digest; } PKCS7_DIGEST; typedef struct pkcs7_encrypted_st { ASN1_INTEGER *version; PKCS7_ENC_CONTENT *enc_data; } PKCS7_ENCRYPT; typedef struct pkcs7_st { unsigned char *asn1; long length; int state; int detached; ASN1_OBJECT *type; union { char *ptr; ASN1_OCTET_STRING *data; PKCS7_SIGNED *sign; PKCS7_ENVELOPE *enveloped; PKCS7_SIGN_ENVELOPE *signed_and_enveloped; PKCS7_DIGEST *digest; PKCS7_ENCRYPT *encrypted; ASN1_TYPE *other; } d; } PKCS7; # 284 "/usr/include/openssl/pkcs7.h" 3 4 PKCS7_ISSUER_AND_SERIAL *PKCS7_ISSUER_AND_SERIAL_new(void); void PKCS7_ISSUER_AND_SERIAL_free(PKCS7_ISSUER_AND_SERIAL *a); PKCS7_ISSUER_AND_SERIAL *d2i_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL **a, const unsigned char **in, long len); int i2d_PKCS7_ISSUER_AND_SERIAL(PKCS7_ISSUER_AND_SERIAL *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ISSUER_AND_SERIAL_it; int PKCS7_ISSUER_AND_SERIAL_digest(PKCS7_ISSUER_AND_SERIAL *data,const EVP_MD *type, unsigned char *md,unsigned int *len) __attribute__((deprecated)); PKCS7 *d2i_PKCS7_fp(FILE *fp,PKCS7 **p7) __attribute__((deprecated)); int i2d_PKCS7_fp(FILE *fp,PKCS7 *p7) __attribute__((deprecated)); PKCS7 *PKCS7_dup(PKCS7 *p7) __attribute__((deprecated)); PKCS7 *d2i_PKCS7_bio(BIO *bp,PKCS7 **p7) __attribute__((deprecated)); int i2d_PKCS7_bio(BIO *bp,PKCS7 *p7) __attribute__((deprecated)); PKCS7_SIGNER_INFO *PKCS7_SIGNER_INFO_new(void); void PKCS7_SIGNER_INFO_free(PKCS7_SIGNER_INFO *a); PKCS7_SIGNER_INFO *d2i_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNER_INFO(PKCS7_SIGNER_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNER_INFO_it; PKCS7_RECIP_INFO *PKCS7_RECIP_INFO_new(void); void PKCS7_RECIP_INFO_free(PKCS7_RECIP_INFO *a); PKCS7_RECIP_INFO *d2i_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO **a, const unsigned char **in, long len); int i2d_PKCS7_RECIP_INFO(PKCS7_RECIP_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS7_RECIP_INFO_it; PKCS7_SIGNED *PKCS7_SIGNED_new(void); void PKCS7_SIGNED_free(PKCS7_SIGNED *a); PKCS7_SIGNED *d2i_PKCS7_SIGNED(PKCS7_SIGNED **a, const unsigned char **in, long len); int i2d_PKCS7_SIGNED(PKCS7_SIGNED *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGNED_it; PKCS7_ENC_CONTENT *PKCS7_ENC_CONTENT_new(void); void PKCS7_ENC_CONTENT_free(PKCS7_ENC_CONTENT *a); PKCS7_ENC_CONTENT *d2i_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT **a, const unsigned char **in, long len); int i2d_PKCS7_ENC_CONTENT(PKCS7_ENC_CONTENT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENC_CONTENT_it; PKCS7_ENVELOPE *PKCS7_ENVELOPE_new(void); void PKCS7_ENVELOPE_free(PKCS7_ENVELOPE *a); PKCS7_ENVELOPE *d2i_PKCS7_ENVELOPE(PKCS7_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_ENVELOPE(PKCS7_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENVELOPE_it; PKCS7_SIGN_ENVELOPE *PKCS7_SIGN_ENVELOPE_new(void); void PKCS7_SIGN_ENVELOPE_free(PKCS7_SIGN_ENVELOPE *a); PKCS7_SIGN_ENVELOPE *d2i_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE **a, const unsigned char **in, long len); int i2d_PKCS7_SIGN_ENVELOPE(PKCS7_SIGN_ENVELOPE *a, unsigned char **out); extern const ASN1_ITEM PKCS7_SIGN_ENVELOPE_it; PKCS7_DIGEST *PKCS7_DIGEST_new(void); void PKCS7_DIGEST_free(PKCS7_DIGEST *a); PKCS7_DIGEST *d2i_PKCS7_DIGEST(PKCS7_DIGEST **a, const unsigned char **in, long len); int i2d_PKCS7_DIGEST(PKCS7_DIGEST *a, unsigned char **out); extern const ASN1_ITEM PKCS7_DIGEST_it; PKCS7_ENCRYPT *PKCS7_ENCRYPT_new(void); void PKCS7_ENCRYPT_free(PKCS7_ENCRYPT *a); PKCS7_ENCRYPT *d2i_PKCS7_ENCRYPT(PKCS7_ENCRYPT **a, const unsigned char **in, long len); int i2d_PKCS7_ENCRYPT(PKCS7_ENCRYPT *a, unsigned char **out); extern const ASN1_ITEM PKCS7_ENCRYPT_it; PKCS7 *PKCS7_new(void); void PKCS7_free(PKCS7 *a); PKCS7 *d2i_PKCS7(PKCS7 **a, const unsigned char **in, long len); int i2d_PKCS7(PKCS7 *a, unsigned char **out); extern const ASN1_ITEM PKCS7_it; extern const ASN1_ITEM PKCS7_ATTR_SIGN_it; extern const ASN1_ITEM PKCS7_ATTR_VERIFY_it; int i2d_PKCS7_NDEF(PKCS7 *a, unsigned char **out); long PKCS7_ctrl(PKCS7 *p7, int cmd, long larg, char *parg) __attribute__((deprecated)); int PKCS7_set_type(PKCS7 *p7, int type) __attribute__((deprecated)); int PKCS7_set0_type_other(PKCS7 *p7, int type, ASN1_TYPE *other) __attribute__((deprecated)); int PKCS7_set_content(PKCS7 *p7, PKCS7 *p7_data) __attribute__((deprecated)); int PKCS7_SIGNER_INFO_set(PKCS7_SIGNER_INFO *p7i, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst) __attribute__((deprecated)); int PKCS7_add_signer(PKCS7 *p7, PKCS7_SIGNER_INFO *p7i) __attribute__((deprecated)); int PKCS7_add_certificate(PKCS7 *p7, X509 *x509) __attribute__((deprecated)); int PKCS7_add_crl(PKCS7 *p7, X509_CRL *x509) __attribute__((deprecated)); int PKCS7_content_new(PKCS7 *p7, int nid) __attribute__((deprecated)); int PKCS7_dataVerify(X509_STORE *cert_store, X509_STORE_CTX *ctx, BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si) __attribute__((deprecated)); int PKCS7_signatureVerify(BIO *bio, PKCS7 *p7, PKCS7_SIGNER_INFO *si, X509 *x509) __attribute__((deprecated)); BIO *PKCS7_dataInit(PKCS7 *p7, BIO *bio) __attribute__((deprecated)); int PKCS7_dataFinal(PKCS7 *p7, BIO *bio) __attribute__((deprecated)); BIO *PKCS7_dataDecode(PKCS7 *p7, EVP_PKEY *pkey, BIO *in_bio, X509 *pcert) __attribute__((deprecated)); PKCS7_SIGNER_INFO *PKCS7_add_signature(PKCS7 *p7, X509 *x509, EVP_PKEY *pkey, const EVP_MD *dgst) __attribute__((deprecated)); X509 *PKCS7_cert_from_signer_info(PKCS7 *p7, PKCS7_SIGNER_INFO *si) __attribute__((deprecated)); int PKCS7_set_digest(PKCS7 *p7, const EVP_MD *md) __attribute__((deprecated)); STACK *PKCS7_get_signer_info(PKCS7 *p7) __attribute__((deprecated)); PKCS7_RECIP_INFO *PKCS7_add_recipient(PKCS7 *p7, X509 *x509) __attribute__((deprecated)); int PKCS7_add_recipient_info(PKCS7 *p7, PKCS7_RECIP_INFO *ri) __attribute__((deprecated)); int PKCS7_RECIP_INFO_set(PKCS7_RECIP_INFO *p7i, X509 *x509) __attribute__((deprecated)); int PKCS7_set_cipher(PKCS7 *p7, const EVP_CIPHER *cipher) __attribute__((deprecated)); PKCS7_ISSUER_AND_SERIAL *PKCS7_get_issuer_and_serial(PKCS7 *p7, int idx) __attribute__((deprecated)); ASN1_OCTET_STRING *PKCS7_digest_from_attributes(STACK *sk) __attribute__((deprecated)); int PKCS7_add_signed_attribute(PKCS7_SIGNER_INFO *p7si,int nid,int type, void *data) __attribute__((deprecated)); int PKCS7_add_attribute (PKCS7_SIGNER_INFO *p7si, int nid, int atrtype, void *value) __attribute__((deprecated)); ASN1_TYPE *PKCS7_get_attribute(PKCS7_SIGNER_INFO *si, int nid) __attribute__((deprecated)); ASN1_TYPE *PKCS7_get_signed_attribute(PKCS7_SIGNER_INFO *si, int nid) __attribute__((deprecated)); int PKCS7_set_signed_attributes(PKCS7_SIGNER_INFO *p7si, STACK *sk) __attribute__((deprecated)); int PKCS7_set_attributes(PKCS7_SIGNER_INFO *p7si,STACK *sk) __attribute__((deprecated)); PKCS7 *PKCS7_sign(X509 *signcert, EVP_PKEY *pkey, STACK *certs, BIO *data, int flags) __attribute__((deprecated)); int PKCS7_verify(PKCS7 *p7, STACK *certs, X509_STORE *store, BIO *indata, BIO *out, int flags) __attribute__((deprecated)); STACK *PKCS7_get0_signers(PKCS7 *p7, STACK *certs, int flags) __attribute__((deprecated)); PKCS7 *PKCS7_encrypt(STACK *certs, BIO *in, const EVP_CIPHER *cipher, int flags) __attribute__((deprecated)); int PKCS7_decrypt(PKCS7 *p7, EVP_PKEY *pkey, X509 *cert, BIO *data, int flags) __attribute__((deprecated)); int PKCS7_add_attrib_smimecap(PKCS7_SIGNER_INFO *si, STACK *cap) __attribute__((deprecated)); STACK *PKCS7_get_smimecap(PKCS7_SIGNER_INFO *si) __attribute__((deprecated)); int PKCS7_simple_smimecap(STACK *sk, int nid, int arg) __attribute__((deprecated)); int SMIME_write_PKCS7(BIO *bio, PKCS7 *p7, BIO *data, int flags) __attribute__((deprecated)); PKCS7 *SMIME_read_PKCS7(BIO *bio, BIO **bcont) __attribute__((deprecated)); int SMIME_crlf_copy(BIO *in, BIO *out, int flags) __attribute__((deprecated)); int SMIME_text(BIO *in, BIO *out) __attribute__((deprecated)); void ERR_load_PKCS7_strings(void) __attribute__((deprecated)); # 577 "/usr/include/openssl/x509.h" 2 3 4 # 752 "/usr/include/openssl/x509.h" 3 4 const char *X509_verify_cert_error_string(long n) __attribute__((deprecated)); int X509_verify(X509 *a, EVP_PKEY *r) __attribute__((deprecated)); int X509_REQ_verify(X509_REQ *a, EVP_PKEY *r) __attribute__((deprecated)); int X509_CRL_verify(X509_CRL *a, EVP_PKEY *r) __attribute__((deprecated)); int NETSCAPE_SPKI_verify(NETSCAPE_SPKI *a, EVP_PKEY *r) __attribute__((deprecated)); NETSCAPE_SPKI * NETSCAPE_SPKI_b64_decode(const char *str, int len) __attribute__((deprecated)); char * NETSCAPE_SPKI_b64_encode(NETSCAPE_SPKI *x) __attribute__((deprecated)); EVP_PKEY *NETSCAPE_SPKI_get_pubkey(NETSCAPE_SPKI *x) __attribute__((deprecated)); int NETSCAPE_SPKI_set_pubkey(NETSCAPE_SPKI *x, EVP_PKEY *pkey) __attribute__((deprecated)); int NETSCAPE_SPKI_print(BIO *out, NETSCAPE_SPKI *spki) __attribute__((deprecated)); int X509_signature_print(BIO *bp,X509_ALGOR *alg, ASN1_STRING *sig) __attribute__((deprecated)); int X509_sign(X509 *x, EVP_PKEY *pkey, const EVP_MD *md) __attribute__((deprecated)); int X509_REQ_sign(X509_REQ *x, EVP_PKEY *pkey, const EVP_MD *md) __attribute__((deprecated)); int X509_CRL_sign(X509_CRL *x, EVP_PKEY *pkey, const EVP_MD *md) __attribute__((deprecated)); int NETSCAPE_SPKI_sign(NETSCAPE_SPKI *x, EVP_PKEY *pkey, const EVP_MD *md) __attribute__((deprecated)); int X509_pubkey_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len) __attribute__((deprecated)); int X509_digest(const X509 *data,const EVP_MD *type, unsigned char *md, unsigned int *len) __attribute__((deprecated)); int X509_CRL_digest(const X509_CRL *data,const EVP_MD *type, unsigned char *md, unsigned int *len) __attribute__((deprecated)); int X509_REQ_digest(const X509_REQ *data,const EVP_MD *type, unsigned char *md, unsigned int *len) __attribute__((deprecated)); int X509_NAME_digest(const X509_NAME *data,const EVP_MD *type, unsigned char *md, unsigned int *len) __attribute__((deprecated)); X509 *d2i_X509_fp(FILE *fp, X509 **x509) __attribute__((deprecated)); int i2d_X509_fp(FILE *fp,X509 *x509) __attribute__((deprecated)); X509_CRL *d2i_X509_CRL_fp(FILE *fp,X509_CRL **crl) __attribute__((deprecated)); int i2d_X509_CRL_fp(FILE *fp,X509_CRL *crl) __attribute__((deprecated)); X509_REQ *d2i_X509_REQ_fp(FILE *fp,X509_REQ **req) __attribute__((deprecated)); int i2d_X509_REQ_fp(FILE *fp,X509_REQ *req) __attribute__((deprecated)); RSA *d2i_RSAPrivateKey_fp(FILE *fp,RSA **rsa) __attribute__((deprecated)); int i2d_RSAPrivateKey_fp(FILE *fp,RSA *rsa) __attribute__((deprecated)); RSA *d2i_RSAPublicKey_fp(FILE *fp,RSA **rsa) __attribute__((deprecated)); int i2d_RSAPublicKey_fp(FILE *fp,RSA *rsa) __attribute__((deprecated)); RSA *d2i_RSA_PUBKEY_fp(FILE *fp,RSA **rsa) __attribute__((deprecated)); int i2d_RSA_PUBKEY_fp(FILE *fp,RSA *rsa) __attribute__((deprecated)); DSA *d2i_DSA_PUBKEY_fp(FILE *fp, DSA **dsa) __attribute__((deprecated)); int i2d_DSA_PUBKEY_fp(FILE *fp, DSA *dsa) __attribute__((deprecated)); DSA *d2i_DSAPrivateKey_fp(FILE *fp, DSA **dsa) __attribute__((deprecated)); int i2d_DSAPrivateKey_fp(FILE *fp, DSA *dsa) __attribute__((deprecated)); EC_KEY *d2i_EC_PUBKEY_fp(FILE *fp, EC_KEY **eckey) __attribute__((deprecated)); int i2d_EC_PUBKEY_fp(FILE *fp, EC_KEY *eckey) __attribute__((deprecated)); EC_KEY *d2i_ECPrivateKey_fp(FILE *fp, EC_KEY **eckey) __attribute__((deprecated)); int i2d_ECPrivateKey_fp(FILE *fp, EC_KEY *eckey) __attribute__((deprecated)); X509_SIG *d2i_PKCS8_fp(FILE *fp,X509_SIG **p8) __attribute__((deprecated)); int i2d_PKCS8_fp(FILE *fp,X509_SIG *p8) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_fp(FILE *fp, PKCS8_PRIV_KEY_INFO **p8inf) __attribute__((deprecated)); int i2d_PKCS8_PRIV_KEY_INFO_fp(FILE *fp,PKCS8_PRIV_KEY_INFO *p8inf) __attribute__((deprecated)); int i2d_PKCS8PrivateKeyInfo_fp(FILE *fp, EVP_PKEY *key) __attribute__((deprecated)); int i2d_PrivateKey_fp(FILE *fp, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY *d2i_PrivateKey_fp(FILE *fp, EVP_PKEY **a) __attribute__((deprecated)); int i2d_PUBKEY_fp(FILE *fp, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY *d2i_PUBKEY_fp(FILE *fp, EVP_PKEY **a) __attribute__((deprecated)); X509 *d2i_X509_bio(BIO *bp,X509 **x509) __attribute__((deprecated)); int i2d_X509_bio(BIO *bp,X509 *x509) __attribute__((deprecated)); X509_CRL *d2i_X509_CRL_bio(BIO *bp,X509_CRL **crl) __attribute__((deprecated)); int i2d_X509_CRL_bio(BIO *bp,X509_CRL *crl) __attribute__((deprecated)); X509_REQ *d2i_X509_REQ_bio(BIO *bp,X509_REQ **req) __attribute__((deprecated)); int i2d_X509_REQ_bio(BIO *bp,X509_REQ *req) __attribute__((deprecated)); RSA *d2i_RSAPrivateKey_bio(BIO *bp,RSA **rsa) __attribute__((deprecated)); int i2d_RSAPrivateKey_bio(BIO *bp,RSA *rsa) __attribute__((deprecated)); RSA *d2i_RSAPublicKey_bio(BIO *bp,RSA **rsa) __attribute__((deprecated)); int i2d_RSAPublicKey_bio(BIO *bp,RSA *rsa) __attribute__((deprecated)); RSA *d2i_RSA_PUBKEY_bio(BIO *bp,RSA **rsa) __attribute__((deprecated)); int i2d_RSA_PUBKEY_bio(BIO *bp,RSA *rsa) __attribute__((deprecated)); DSA *d2i_DSA_PUBKEY_bio(BIO *bp, DSA **dsa) __attribute__((deprecated)); int i2d_DSA_PUBKEY_bio(BIO *bp, DSA *dsa) __attribute__((deprecated)); DSA *d2i_DSAPrivateKey_bio(BIO *bp, DSA **dsa) __attribute__((deprecated)); int i2d_DSAPrivateKey_bio(BIO *bp, DSA *dsa) __attribute__((deprecated)); EC_KEY *d2i_EC_PUBKEY_bio(BIO *bp, EC_KEY **eckey) __attribute__((deprecated)); int i2d_EC_PUBKEY_bio(BIO *bp, EC_KEY *eckey) __attribute__((deprecated)); EC_KEY *d2i_ECPrivateKey_bio(BIO *bp, EC_KEY **eckey) __attribute__((deprecated)); int i2d_ECPrivateKey_bio(BIO *bp, EC_KEY *eckey) __attribute__((deprecated)); X509_SIG *d2i_PKCS8_bio(BIO *bp,X509_SIG **p8) __attribute__((deprecated)); int i2d_PKCS8_bio(BIO *bp,X509_SIG *p8) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO_bio(BIO *bp, PKCS8_PRIV_KEY_INFO **p8inf) __attribute__((deprecated)); int i2d_PKCS8_PRIV_KEY_INFO_bio(BIO *bp,PKCS8_PRIV_KEY_INFO *p8inf) __attribute__((deprecated)); int i2d_PKCS8PrivateKeyInfo_bio(BIO *bp, EVP_PKEY *key) __attribute__((deprecated)); int i2d_PrivateKey_bio(BIO *bp, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY *d2i_PrivateKey_bio(BIO *bp, EVP_PKEY **a) __attribute__((deprecated)); int i2d_PUBKEY_bio(BIO *bp, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY *d2i_PUBKEY_bio(BIO *bp, EVP_PKEY **a) __attribute__((deprecated)); X509 *X509_dup(X509 *x509) __attribute__((deprecated)); X509_ATTRIBUTE *X509_ATTRIBUTE_dup(X509_ATTRIBUTE *xa) __attribute__((deprecated)); X509_EXTENSION *X509_EXTENSION_dup(X509_EXTENSION *ex) __attribute__((deprecated)); X509_CRL *X509_CRL_dup(X509_CRL *crl) __attribute__((deprecated)); X509_REQ *X509_REQ_dup(X509_REQ *req) __attribute__((deprecated)); X509_ALGOR *X509_ALGOR_dup(X509_ALGOR *xn) __attribute__((deprecated)); int X509_ALGOR_set0(X509_ALGOR *alg, ASN1_OBJECT *aobj, int ptype, void *pval) __attribute__((deprecated)); void X509_ALGOR_get0(ASN1_OBJECT **paobj, int *pptype, void **ppval, X509_ALGOR *algor) __attribute__((deprecated)); int X509_ALGOR_cmp(const X509_ALGOR *a, const X509_ALGOR *b) __attribute__((deprecated)); X509_NAME *X509_NAME_dup(X509_NAME *xn) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_ENTRY_dup(X509_NAME_ENTRY *ne) __attribute__((deprecated)); int X509_cmp_time(ASN1_TIME *s, time_t *t) __attribute__((deprecated)); int X509_cmp_current_time(ASN1_TIME *s) __attribute__((deprecated)); ASN1_TIME * X509_time_adj(ASN1_TIME *s, long adj, time_t *t) __attribute__((deprecated)); ASN1_TIME * X509_gmtime_adj(ASN1_TIME *s, long adj) __attribute__((deprecated)); const char * X509_get_default_cert_area(void ) __attribute__((deprecated)); const char * X509_get_default_cert_dir(void ) __attribute__((deprecated)); const char * X509_get_default_cert_file(void ) __attribute__((deprecated)); const char * X509_get_default_cert_dir_env(void ) __attribute__((deprecated)); const char * X509_get_default_cert_file_env(void ) __attribute__((deprecated)); const char * X509_get_default_private_dir(void ) __attribute__((deprecated)); X509_REQ * X509_to_X509_REQ(X509 *x, EVP_PKEY *pkey, const EVP_MD *md) __attribute__((deprecated)); X509 * X509_REQ_to_X509(X509_REQ *r, int days,EVP_PKEY *pkey) __attribute__((deprecated)); X509_ALGOR *X509_ALGOR_new(void); void X509_ALGOR_free(X509_ALGOR *a); X509_ALGOR *d2i_X509_ALGOR(X509_ALGOR **a, const unsigned char **in, long len); int i2d_X509_ALGOR(X509_ALGOR *a, unsigned char **out); extern const ASN1_ITEM X509_ALGOR_it; X509_ALGORS *d2i_X509_ALGORS(X509_ALGORS **a, const unsigned char **in, long len); int i2d_X509_ALGORS(X509_ALGORS *a, unsigned char **out); extern const ASN1_ITEM X509_ALGORS_it; X509_VAL *X509_VAL_new(void); void X509_VAL_free(X509_VAL *a); X509_VAL *d2i_X509_VAL(X509_VAL **a, const unsigned char **in, long len); int i2d_X509_VAL(X509_VAL *a, unsigned char **out); extern const ASN1_ITEM X509_VAL_it; X509_PUBKEY *X509_PUBKEY_new(void); void X509_PUBKEY_free(X509_PUBKEY *a); X509_PUBKEY *d2i_X509_PUBKEY(X509_PUBKEY **a, const unsigned char **in, long len); int i2d_X509_PUBKEY(X509_PUBKEY *a, unsigned char **out); extern const ASN1_ITEM X509_PUBKEY_it; int X509_PUBKEY_set(X509_PUBKEY **x, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY * X509_PUBKEY_get(X509_PUBKEY *key) __attribute__((deprecated)); int X509_get_pubkey_parameters(EVP_PKEY *pkey, STACK *chain) __attribute__((deprecated)); int i2d_PUBKEY(EVP_PKEY *a,unsigned char **pp) __attribute__((deprecated)); EVP_PKEY * d2i_PUBKEY(EVP_PKEY **a,const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_RSA_PUBKEY(RSA *a,unsigned char **pp) __attribute__((deprecated)); RSA * d2i_RSA_PUBKEY(RSA **a,const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_DSA_PUBKEY(DSA *a,unsigned char **pp) __attribute__((deprecated)); DSA * d2i_DSA_PUBKEY(DSA **a,const unsigned char **pp, long length) __attribute__((deprecated)); int i2d_EC_PUBKEY(EC_KEY *a, unsigned char **pp) __attribute__((deprecated)); EC_KEY *d2i_EC_PUBKEY(EC_KEY **a, const unsigned char **pp, long length) __attribute__((deprecated)); X509_SIG *X509_SIG_new(void); void X509_SIG_free(X509_SIG *a); X509_SIG *d2i_X509_SIG(X509_SIG **a, const unsigned char **in, long len); int i2d_X509_SIG(X509_SIG *a, unsigned char **out); extern const ASN1_ITEM X509_SIG_it; X509_REQ_INFO *X509_REQ_INFO_new(void); void X509_REQ_INFO_free(X509_REQ_INFO *a); X509_REQ_INFO *d2i_X509_REQ_INFO(X509_REQ_INFO **a, const unsigned char **in, long len); int i2d_X509_REQ_INFO(X509_REQ_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_INFO_it; X509_REQ *X509_REQ_new(void); void X509_REQ_free(X509_REQ *a); X509_REQ *d2i_X509_REQ(X509_REQ **a, const unsigned char **in, long len); int i2d_X509_REQ(X509_REQ *a, unsigned char **out); extern const ASN1_ITEM X509_REQ_it; X509_ATTRIBUTE *X509_ATTRIBUTE_new(void); void X509_ATTRIBUTE_free(X509_ATTRIBUTE *a); X509_ATTRIBUTE *d2i_X509_ATTRIBUTE(X509_ATTRIBUTE **a, const unsigned char **in, long len); int i2d_X509_ATTRIBUTE(X509_ATTRIBUTE *a, unsigned char **out); extern const ASN1_ITEM X509_ATTRIBUTE_it; X509_ATTRIBUTE *X509_ATTRIBUTE_create(int nid, int atrtype, void *value) __attribute__((deprecated)); X509_EXTENSION *X509_EXTENSION_new(void); void X509_EXTENSION_free(X509_EXTENSION *a); X509_EXTENSION *d2i_X509_EXTENSION(X509_EXTENSION **a, const unsigned char **in, long len); int i2d_X509_EXTENSION(X509_EXTENSION *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSION_it; X509_EXTENSIONS *d2i_X509_EXTENSIONS(X509_EXTENSIONS **a, const unsigned char **in, long len); int i2d_X509_EXTENSIONS(X509_EXTENSIONS *a, unsigned char **out); extern const ASN1_ITEM X509_EXTENSIONS_it; X509_NAME_ENTRY *X509_NAME_ENTRY_new(void); void X509_NAME_ENTRY_free(X509_NAME_ENTRY *a); X509_NAME_ENTRY *d2i_X509_NAME_ENTRY(X509_NAME_ENTRY **a, const unsigned char **in, long len); int i2d_X509_NAME_ENTRY(X509_NAME_ENTRY *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_ENTRY_it; X509_NAME *X509_NAME_new(void); void X509_NAME_free(X509_NAME *a); X509_NAME *d2i_X509_NAME(X509_NAME **a, const unsigned char **in, long len); int i2d_X509_NAME(X509_NAME *a, unsigned char **out); extern const ASN1_ITEM X509_NAME_it; int X509_NAME_set(X509_NAME **xn, X509_NAME *name) __attribute__((deprecated)); X509_CINF *X509_CINF_new(void); void X509_CINF_free(X509_CINF *a); X509_CINF *d2i_X509_CINF(X509_CINF **a, const unsigned char **in, long len); int i2d_X509_CINF(X509_CINF *a, unsigned char **out); extern const ASN1_ITEM X509_CINF_it; X509 *X509_new(void); void X509_free(X509 *a); X509 *d2i_X509(X509 **a, const unsigned char **in, long len); int i2d_X509(X509 *a, unsigned char **out); extern const ASN1_ITEM X509_it; X509_CERT_AUX *X509_CERT_AUX_new(void); void X509_CERT_AUX_free(X509_CERT_AUX *a); X509_CERT_AUX *d2i_X509_CERT_AUX(X509_CERT_AUX **a, const unsigned char **in, long len); int i2d_X509_CERT_AUX(X509_CERT_AUX *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_AUX_it; X509_CERT_PAIR *X509_CERT_PAIR_new(void); void X509_CERT_PAIR_free(X509_CERT_PAIR *a); X509_CERT_PAIR *d2i_X509_CERT_PAIR(X509_CERT_PAIR **a, const unsigned char **in, long len); int i2d_X509_CERT_PAIR(X509_CERT_PAIR *a, unsigned char **out); extern const ASN1_ITEM X509_CERT_PAIR_it; int X509_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int X509_set_ex_data(X509 *r, int idx, void *arg) __attribute__((deprecated)); void *X509_get_ex_data(X509 *r, int idx) __attribute__((deprecated)); int i2d_X509_AUX(X509 *a,unsigned char **pp) __attribute__((deprecated)); X509 * d2i_X509_AUX(X509 **a,const unsigned char **pp,long length) __attribute__((deprecated)); int X509_alias_set1(X509 *x, unsigned char *name, int len) __attribute__((deprecated)); int X509_keyid_set1(X509 *x, unsigned char *id, int len) __attribute__((deprecated)); unsigned char * X509_alias_get0(X509 *x, int *len) __attribute__((deprecated)); unsigned char * X509_keyid_get0(X509 *x, int *len) __attribute__((deprecated)); int (*X509_TRUST_set_default(int (*trust)(int , X509 *, int)))(int, X509 *, int) __attribute__((deprecated)); int X509_TRUST_set(int *t, int trust) __attribute__((deprecated)); int X509_add1_trust_object(X509 *x, ASN1_OBJECT *obj) __attribute__((deprecated)); int X509_add1_reject_object(X509 *x, ASN1_OBJECT *obj) __attribute__((deprecated)); void X509_trust_clear(X509 *x) __attribute__((deprecated)); void X509_reject_clear(X509 *x) __attribute__((deprecated)); X509_REVOKED *X509_REVOKED_new(void); void X509_REVOKED_free(X509_REVOKED *a); X509_REVOKED *d2i_X509_REVOKED(X509_REVOKED **a, const unsigned char **in, long len); int i2d_X509_REVOKED(X509_REVOKED *a, unsigned char **out); extern const ASN1_ITEM X509_REVOKED_it; X509_CRL_INFO *X509_CRL_INFO_new(void); void X509_CRL_INFO_free(X509_CRL_INFO *a); X509_CRL_INFO *d2i_X509_CRL_INFO(X509_CRL_INFO **a, const unsigned char **in, long len); int i2d_X509_CRL_INFO(X509_CRL_INFO *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_INFO_it; X509_CRL *X509_CRL_new(void); void X509_CRL_free(X509_CRL *a); X509_CRL *d2i_X509_CRL(X509_CRL **a, const unsigned char **in, long len); int i2d_X509_CRL(X509_CRL *a, unsigned char **out); extern const ASN1_ITEM X509_CRL_it; int X509_CRL_add0_revoked(X509_CRL *crl, X509_REVOKED *rev) __attribute__((deprecated)); X509_PKEY * X509_PKEY_new(void ) __attribute__((deprecated)); void X509_PKEY_free(X509_PKEY *a) __attribute__((deprecated)); int i2d_X509_PKEY(X509_PKEY *a,unsigned char **pp) __attribute__((deprecated)); X509_PKEY * d2i_X509_PKEY(X509_PKEY **a,const unsigned char **pp,long length) __attribute__((deprecated)); NETSCAPE_SPKI *NETSCAPE_SPKI_new(void); void NETSCAPE_SPKI_free(NETSCAPE_SPKI *a); NETSCAPE_SPKI *d2i_NETSCAPE_SPKI(NETSCAPE_SPKI **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKI(NETSCAPE_SPKI *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKI_it; NETSCAPE_SPKAC *NETSCAPE_SPKAC_new(void); void NETSCAPE_SPKAC_free(NETSCAPE_SPKAC *a); NETSCAPE_SPKAC *d2i_NETSCAPE_SPKAC(NETSCAPE_SPKAC **a, const unsigned char **in, long len); int i2d_NETSCAPE_SPKAC(NETSCAPE_SPKAC *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_SPKAC_it; NETSCAPE_CERT_SEQUENCE *NETSCAPE_CERT_SEQUENCE_new(void); void NETSCAPE_CERT_SEQUENCE_free(NETSCAPE_CERT_SEQUENCE *a); NETSCAPE_CERT_SEQUENCE *d2i_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE **a, const unsigned char **in, long len); int i2d_NETSCAPE_CERT_SEQUENCE(NETSCAPE_CERT_SEQUENCE *a, unsigned char **out); extern const ASN1_ITEM NETSCAPE_CERT_SEQUENCE_it; X509_INFO * X509_INFO_new(void) __attribute__((deprecated)); void X509_INFO_free(X509_INFO *a) __attribute__((deprecated)); char * X509_NAME_oneline(X509_NAME *a,char *buf,int size) __attribute__((deprecated)); int ASN1_verify(i2d_of_void *i2d, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,char *data,EVP_PKEY *pkey) __attribute__((deprecated)); int ASN1_digest(i2d_of_void *i2d,const EVP_MD *type,char *data, unsigned char *md,unsigned int *len) __attribute__((deprecated)); int ASN1_sign(i2d_of_void *i2d, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, char *data,EVP_PKEY *pkey, const EVP_MD *type) __attribute__((deprecated)); int ASN1_item_digest(const ASN1_ITEM *it,const EVP_MD *type,void *data, unsigned char *md,unsigned int *len) __attribute__((deprecated)); int ASN1_item_verify(const ASN1_ITEM *it, X509_ALGOR *algor1, ASN1_BIT_STRING *signature,void *data,EVP_PKEY *pkey) __attribute__((deprecated)); int ASN1_item_sign(const ASN1_ITEM *it, X509_ALGOR *algor1, X509_ALGOR *algor2, ASN1_BIT_STRING *signature, void *data, EVP_PKEY *pkey, const EVP_MD *type) __attribute__((deprecated)); int X509_set_version(X509 *x,long version) __attribute__((deprecated)); int X509_set_serialNumber(X509 *x, ASN1_INTEGER *serial) __attribute__((deprecated)); ASN1_INTEGER * X509_get_serialNumber(X509 *x) __attribute__((deprecated)); int X509_set_issuer_name(X509 *x, X509_NAME *name) __attribute__((deprecated)); X509_NAME * X509_get_issuer_name(X509 *a) __attribute__((deprecated)); int X509_set_subject_name(X509 *x, X509_NAME *name) __attribute__((deprecated)); X509_NAME * X509_get_subject_name(X509 *a) __attribute__((deprecated)); int X509_set_notBefore(X509 *x, ASN1_TIME *tm) __attribute__((deprecated)); int X509_set_notAfter(X509 *x, ASN1_TIME *tm) __attribute__((deprecated)); int X509_set_pubkey(X509 *x, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY * X509_get_pubkey(X509 *x) __attribute__((deprecated)); ASN1_BIT_STRING * X509_get0_pubkey_bitstr(const X509 *x) __attribute__((deprecated)); int X509_certificate_type(X509 *x,EVP_PKEY *pubkey ) __attribute__((deprecated)); int X509_REQ_set_version(X509_REQ *x,long version) __attribute__((deprecated)); int X509_REQ_set_subject_name(X509_REQ *req,X509_NAME *name) __attribute__((deprecated)); int X509_REQ_set_pubkey(X509_REQ *x, EVP_PKEY *pkey) __attribute__((deprecated)); EVP_PKEY * X509_REQ_get_pubkey(X509_REQ *req) __attribute__((deprecated)); int X509_REQ_extension_nid(int nid) __attribute__((deprecated)); int * X509_REQ_get_extension_nids(void) __attribute__((deprecated)); void X509_REQ_set_extension_nids(int *nids) __attribute__((deprecated)); STACK *X509_REQ_get_extensions(X509_REQ *req) __attribute__((deprecated)); int X509_REQ_add_extensions_nid(X509_REQ *req, STACK *exts, int nid) __attribute__((deprecated)); int X509_REQ_add_extensions(X509_REQ *req, STACK *exts) __attribute__((deprecated)); int X509_REQ_get_attr_count(const X509_REQ *req) __attribute__((deprecated)); int X509_REQ_get_attr_by_NID(const X509_REQ *req, int nid, int lastpos) __attribute__((deprecated)); int X509_REQ_get_attr_by_OBJ(const X509_REQ *req, ASN1_OBJECT *obj, int lastpos) __attribute__((deprecated)); X509_ATTRIBUTE *X509_REQ_get_attr(const X509_REQ *req, int loc) __attribute__((deprecated)); X509_ATTRIBUTE *X509_REQ_delete_attr(X509_REQ *req, int loc) __attribute__((deprecated)); int X509_REQ_add1_attr(X509_REQ *req, X509_ATTRIBUTE *attr) __attribute__((deprecated)); int X509_REQ_add1_attr_by_OBJ(X509_REQ *req, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_REQ_add1_attr_by_NID(X509_REQ *req, int nid, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_REQ_add1_attr_by_txt(X509_REQ *req, const char *attrname, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_CRL_set_version(X509_CRL *x, long version) __attribute__((deprecated)); int X509_CRL_set_issuer_name(X509_CRL *x, X509_NAME *name) __attribute__((deprecated)); int X509_CRL_set_lastUpdate(X509_CRL *x, ASN1_TIME *tm) __attribute__((deprecated)); int X509_CRL_set_nextUpdate(X509_CRL *x, ASN1_TIME *tm) __attribute__((deprecated)); int X509_CRL_sort(X509_CRL *crl) __attribute__((deprecated)); int X509_REVOKED_set_serialNumber(X509_REVOKED *x, ASN1_INTEGER *serial) __attribute__((deprecated)); int X509_REVOKED_set_revocationDate(X509_REVOKED *r, ASN1_TIME *tm) __attribute__((deprecated)); int X509_REQ_check_private_key(X509_REQ *x509,EVP_PKEY *pkey) __attribute__((deprecated)); int X509_check_private_key(X509 *x509,EVP_PKEY *pkey) __attribute__((deprecated)); int X509_issuer_and_serial_cmp(const X509 *a, const X509 *b) __attribute__((deprecated)); unsigned long X509_issuer_and_serial_hash(X509 *a) __attribute__((deprecated)); int X509_issuer_name_cmp(const X509 *a, const X509 *b) __attribute__((deprecated)); unsigned long X509_issuer_name_hash(X509 *a) __attribute__((deprecated)); int X509_subject_name_cmp(const X509 *a, const X509 *b) __attribute__((deprecated)); unsigned long X509_subject_name_hash(X509 *x) __attribute__((deprecated)); int X509_cmp(const X509 *a, const X509 *b) __attribute__((deprecated)); int X509_NAME_cmp(const X509_NAME *a, const X509_NAME *b) __attribute__((deprecated)); unsigned long X509_NAME_hash(X509_NAME *x) __attribute__((deprecated)); int X509_CRL_cmp(const X509_CRL *a, const X509_CRL *b) __attribute__((deprecated)); int X509_print_ex_fp(FILE *bp,X509 *x, unsigned long nmflag, unsigned long cflag) __attribute__((deprecated)); int X509_print_fp(FILE *bp,X509 *x) __attribute__((deprecated)); int X509_CRL_print_fp(FILE *bp,X509_CRL *x) __attribute__((deprecated)); int X509_REQ_print_fp(FILE *bp,X509_REQ *req) __attribute__((deprecated)); int X509_NAME_print_ex_fp(FILE *fp, X509_NAME *nm, int indent, unsigned long flags) __attribute__((deprecated)); int X509_NAME_print(BIO *bp, X509_NAME *name, int obase) __attribute__((deprecated)); int X509_NAME_print_ex(BIO *out, X509_NAME *nm, int indent, unsigned long flags) __attribute__((deprecated)); int X509_print_ex(BIO *bp,X509 *x, unsigned long nmflag, unsigned long cflag) __attribute__((deprecated)); int X509_print(BIO *bp,X509 *x) __attribute__((deprecated)); int X509_ocspid_print(BIO *bp,X509 *x) __attribute__((deprecated)); int X509_CERT_AUX_print(BIO *bp,X509_CERT_AUX *x, int indent) __attribute__((deprecated)); int X509_CRL_print(BIO *bp,X509_CRL *x) __attribute__((deprecated)); int X509_REQ_print_ex(BIO *bp, X509_REQ *x, unsigned long nmflag, unsigned long cflag) __attribute__((deprecated)); int X509_REQ_print(BIO *bp,X509_REQ *req) __attribute__((deprecated)); int X509_NAME_entry_count(X509_NAME *name) __attribute__((deprecated)); int X509_NAME_get_text_by_NID(X509_NAME *name, int nid, char *buf,int len) __attribute__((deprecated)); int X509_NAME_get_text_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, char *buf,int len) __attribute__((deprecated)); int X509_NAME_get_index_by_NID(X509_NAME *name,int nid,int lastpos) __attribute__((deprecated)); int X509_NAME_get_index_by_OBJ(X509_NAME *name,ASN1_OBJECT *obj, int lastpos) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_get_entry(X509_NAME *name, int loc) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_delete_entry(X509_NAME *name, int loc) __attribute__((deprecated)); int X509_NAME_add_entry(X509_NAME *name,X509_NAME_ENTRY *ne, int loc, int set) __attribute__((deprecated)); int X509_NAME_add_entry_by_OBJ(X509_NAME *name, ASN1_OBJECT *obj, int type, unsigned char *bytes, int len, int loc, int set) __attribute__((deprecated)); int X509_NAME_add_entry_by_NID(X509_NAME *name, int nid, int type, unsigned char *bytes, int len, int loc, int set) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_txt(X509_NAME_ENTRY **ne, const char *field, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_NID(X509_NAME_ENTRY **ne, int nid, int type,unsigned char *bytes, int len) __attribute__((deprecated)); int X509_NAME_add_entry_by_txt(X509_NAME *name, const char *field, int type, const unsigned char *bytes, int len, int loc, int set) __attribute__((deprecated)); X509_NAME_ENTRY *X509_NAME_ENTRY_create_by_OBJ(X509_NAME_ENTRY **ne, ASN1_OBJECT *obj, int type,const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_NAME_ENTRY_set_object(X509_NAME_ENTRY *ne, ASN1_OBJECT *obj) __attribute__((deprecated)); int X509_NAME_ENTRY_set_data(X509_NAME_ENTRY *ne, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); ASN1_OBJECT * X509_NAME_ENTRY_get_object(X509_NAME_ENTRY *ne) __attribute__((deprecated)); ASN1_STRING * X509_NAME_ENTRY_get_data(X509_NAME_ENTRY *ne) __attribute__((deprecated)); int X509v3_get_ext_count(const STACK *x) __attribute__((deprecated)); int X509v3_get_ext_by_NID(const STACK *x, int nid, int lastpos) __attribute__((deprecated)); int X509v3_get_ext_by_OBJ(const STACK *x, ASN1_OBJECT *obj,int lastpos) __attribute__((deprecated)); int X509v3_get_ext_by_critical(const STACK *x, int crit, int lastpos) __attribute__((deprecated)); X509_EXTENSION *X509v3_get_ext(const STACK *x, int loc) __attribute__((deprecated)); X509_EXTENSION *X509v3_delete_ext(STACK *x, int loc) __attribute__((deprecated)); STACK *X509v3_add_ext(STACK **x, X509_EXTENSION *ex, int loc) __attribute__((deprecated)); int X509_get_ext_count(X509 *x) __attribute__((deprecated)); int X509_get_ext_by_NID(X509 *x, int nid, int lastpos) __attribute__((deprecated)); int X509_get_ext_by_OBJ(X509 *x,ASN1_OBJECT *obj,int lastpos) __attribute__((deprecated)); int X509_get_ext_by_critical(X509 *x, int crit, int lastpos) __attribute__((deprecated)); X509_EXTENSION *X509_get_ext(X509 *x, int loc) __attribute__((deprecated)); X509_EXTENSION *X509_delete_ext(X509 *x, int loc) __attribute__((deprecated)); int X509_add_ext(X509 *x, X509_EXTENSION *ex, int loc) __attribute__((deprecated)); void * X509_get_ext_d2i(X509 *x, int nid, int *crit, int *idx) __attribute__((deprecated)); int X509_add1_ext_i2d(X509 *x, int nid, void *value, int crit, unsigned long flags) __attribute__((deprecated)); int X509_CRL_get_ext_count(X509_CRL *x) __attribute__((deprecated)); int X509_CRL_get_ext_by_NID(X509_CRL *x, int nid, int lastpos) __attribute__((deprecated)); int X509_CRL_get_ext_by_OBJ(X509_CRL *x,ASN1_OBJECT *obj,int lastpos) __attribute__((deprecated)); int X509_CRL_get_ext_by_critical(X509_CRL *x, int crit, int lastpos) __attribute__((deprecated)); X509_EXTENSION *X509_CRL_get_ext(X509_CRL *x, int loc) __attribute__((deprecated)); X509_EXTENSION *X509_CRL_delete_ext(X509_CRL *x, int loc) __attribute__((deprecated)); int X509_CRL_add_ext(X509_CRL *x, X509_EXTENSION *ex, int loc) __attribute__((deprecated)); void * X509_CRL_get_ext_d2i(X509_CRL *x, int nid, int *crit, int *idx) __attribute__((deprecated)); int X509_CRL_add1_ext_i2d(X509_CRL *x, int nid, void *value, int crit, unsigned long flags) __attribute__((deprecated)); int X509_REVOKED_get_ext_count(X509_REVOKED *x) __attribute__((deprecated)); int X509_REVOKED_get_ext_by_NID(X509_REVOKED *x, int nid, int lastpos) __attribute__((deprecated)); int X509_REVOKED_get_ext_by_OBJ(X509_REVOKED *x,ASN1_OBJECT *obj,int lastpos) __attribute__((deprecated)); int X509_REVOKED_get_ext_by_critical(X509_REVOKED *x, int crit, int lastpos) __attribute__((deprecated)); X509_EXTENSION *X509_REVOKED_get_ext(X509_REVOKED *x, int loc) __attribute__((deprecated)); X509_EXTENSION *X509_REVOKED_delete_ext(X509_REVOKED *x, int loc) __attribute__((deprecated)); int X509_REVOKED_add_ext(X509_REVOKED *x, X509_EXTENSION *ex, int loc) __attribute__((deprecated)); void * X509_REVOKED_get_ext_d2i(X509_REVOKED *x, int nid, int *crit, int *idx) __attribute__((deprecated)); int X509_REVOKED_add1_ext_i2d(X509_REVOKED *x, int nid, void *value, int crit, unsigned long flags) __attribute__((deprecated)); X509_EXTENSION *X509_EXTENSION_create_by_NID(X509_EXTENSION **ex, int nid, int crit, ASN1_OCTET_STRING *data) __attribute__((deprecated)); X509_EXTENSION *X509_EXTENSION_create_by_OBJ(X509_EXTENSION **ex, ASN1_OBJECT *obj,int crit,ASN1_OCTET_STRING *data) __attribute__((deprecated)); int X509_EXTENSION_set_object(X509_EXTENSION *ex,ASN1_OBJECT *obj) __attribute__((deprecated)); int X509_EXTENSION_set_critical(X509_EXTENSION *ex, int crit) __attribute__((deprecated)); int X509_EXTENSION_set_data(X509_EXTENSION *ex, ASN1_OCTET_STRING *data) __attribute__((deprecated)); ASN1_OBJECT * X509_EXTENSION_get_object(X509_EXTENSION *ex) __attribute__((deprecated)); ASN1_OCTET_STRING *X509_EXTENSION_get_data(X509_EXTENSION *ne) __attribute__((deprecated)); int X509_EXTENSION_get_critical(X509_EXTENSION *ex) __attribute__((deprecated)); int X509at_get_attr_count(const STACK *x) __attribute__((deprecated)); int X509at_get_attr_by_NID(const STACK *x, int nid, int lastpos) __attribute__((deprecated)); int X509at_get_attr_by_OBJ(const STACK *sk, ASN1_OBJECT *obj, int lastpos) __attribute__((deprecated)); X509_ATTRIBUTE *X509at_get_attr(const STACK *x, int loc) __attribute__((deprecated)); X509_ATTRIBUTE *X509at_delete_attr(STACK *x, int loc) __attribute__((deprecated)); STACK *X509at_add1_attr(STACK **x, X509_ATTRIBUTE *attr) __attribute__((deprecated)); STACK *X509at_add1_attr_by_OBJ(STACK **x, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); STACK *X509at_add1_attr_by_NID(STACK **x, int nid, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); STACK *X509at_add1_attr_by_txt(STACK **x, const char *attrname, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); void *X509at_get0_data_by_OBJ(STACK *x, ASN1_OBJECT *obj, int lastpos, int type) __attribute__((deprecated)); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_NID(X509_ATTRIBUTE **attr, int nid, int atrtype, const void *data, int len) __attribute__((deprecated)); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_OBJ(X509_ATTRIBUTE **attr, const ASN1_OBJECT *obj, int atrtype, const void *data, int len) __attribute__((deprecated)); X509_ATTRIBUTE *X509_ATTRIBUTE_create_by_txt(X509_ATTRIBUTE **attr, const char *atrname, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_ATTRIBUTE_set1_object(X509_ATTRIBUTE *attr, const ASN1_OBJECT *obj) __attribute__((deprecated)); int X509_ATTRIBUTE_set1_data(X509_ATTRIBUTE *attr, int attrtype, const void *data, int len) __attribute__((deprecated)); void *X509_ATTRIBUTE_get0_data(X509_ATTRIBUTE *attr, int idx, int atrtype, void *data) __attribute__((deprecated)); int X509_ATTRIBUTE_count(X509_ATTRIBUTE *attr) __attribute__((deprecated)); ASN1_OBJECT *X509_ATTRIBUTE_get0_object(X509_ATTRIBUTE *attr) __attribute__((deprecated)); ASN1_TYPE *X509_ATTRIBUTE_get0_type(X509_ATTRIBUTE *attr, int idx) __attribute__((deprecated)); int EVP_PKEY_get_attr_count(const EVP_PKEY *key) __attribute__((deprecated)); int EVP_PKEY_get_attr_by_NID(const EVP_PKEY *key, int nid, int lastpos) __attribute__((deprecated)); int EVP_PKEY_get_attr_by_OBJ(const EVP_PKEY *key, ASN1_OBJECT *obj, int lastpos) __attribute__((deprecated)); X509_ATTRIBUTE *EVP_PKEY_get_attr(const EVP_PKEY *key, int loc) __attribute__((deprecated)); X509_ATTRIBUTE *EVP_PKEY_delete_attr(EVP_PKEY *key, int loc) __attribute__((deprecated)); int EVP_PKEY_add1_attr(EVP_PKEY *key, X509_ATTRIBUTE *attr) __attribute__((deprecated)); int EVP_PKEY_add1_attr_by_OBJ(EVP_PKEY *key, const ASN1_OBJECT *obj, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int EVP_PKEY_add1_attr_by_NID(EVP_PKEY *key, int nid, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int EVP_PKEY_add1_attr_by_txt(EVP_PKEY *key, const char *attrname, int type, const unsigned char *bytes, int len) __attribute__((deprecated)); int X509_verify_cert(X509_STORE_CTX *ctx) __attribute__((deprecated)); X509 *X509_find_by_issuer_and_serial(STACK *sk,X509_NAME *name, ASN1_INTEGER *serial) __attribute__((deprecated)); X509 *X509_find_by_subject(STACK *sk,X509_NAME *name) __attribute__((deprecated)); PBEPARAM *PBEPARAM_new(void); void PBEPARAM_free(PBEPARAM *a); PBEPARAM *d2i_PBEPARAM(PBEPARAM **a, const unsigned char **in, long len); int i2d_PBEPARAM(PBEPARAM *a, unsigned char **out); extern const ASN1_ITEM PBEPARAM_it; PBE2PARAM *PBE2PARAM_new(void); void PBE2PARAM_free(PBE2PARAM *a); PBE2PARAM *d2i_PBE2PARAM(PBE2PARAM **a, const unsigned char **in, long len); int i2d_PBE2PARAM(PBE2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBE2PARAM_it; PBKDF2PARAM *PBKDF2PARAM_new(void); void PBKDF2PARAM_free(PBKDF2PARAM *a); PBKDF2PARAM *d2i_PBKDF2PARAM(PBKDF2PARAM **a, const unsigned char **in, long len); int i2d_PBKDF2PARAM(PBKDF2PARAM *a, unsigned char **out); extern const ASN1_ITEM PBKDF2PARAM_it; X509_ALGOR *PKCS5_pbe_set(int alg, int iter, unsigned char *salt, int saltlen) __attribute__((deprecated)); X509_ALGOR *PKCS5_pbe2_set(const EVP_CIPHER *cipher, int iter, unsigned char *salt, int saltlen) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *PKCS8_PRIV_KEY_INFO_new(void); void PKCS8_PRIV_KEY_INFO_free(PKCS8_PRIV_KEY_INFO *a); PKCS8_PRIV_KEY_INFO *d2i_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO **a, const unsigned char **in, long len); int i2d_PKCS8_PRIV_KEY_INFO(PKCS8_PRIV_KEY_INFO *a, unsigned char **out); extern const ASN1_ITEM PKCS8_PRIV_KEY_INFO_it; EVP_PKEY *EVP_PKCS82PKEY(PKCS8_PRIV_KEY_INFO *p8) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8(EVP_PKEY *pkey) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *EVP_PKEY2PKCS8_broken(EVP_PKEY *pkey, int broken) __attribute__((deprecated)); PKCS8_PRIV_KEY_INFO *PKCS8_set_broken(PKCS8_PRIV_KEY_INFO *p8, int broken) __attribute__((deprecated)); int X509_check_trust(X509 *x, int id, int flags) __attribute__((deprecated)); int X509_TRUST_get_count(void) __attribute__((deprecated)); X509_TRUST * X509_TRUST_get0(int idx) __attribute__((deprecated)); int X509_TRUST_get_by_id(int id) __attribute__((deprecated)); int X509_TRUST_add(int id, int flags, int (*ck)(X509_TRUST *, X509 *, int), char *name, int arg1, void *arg2) __attribute__((deprecated)); void X509_TRUST_cleanup(void) __attribute__((deprecated)); int X509_TRUST_get_flags(X509_TRUST *xp) __attribute__((deprecated)); char *X509_TRUST_get0_name(X509_TRUST *xp) __attribute__((deprecated)); int X509_TRUST_get_trust(X509_TRUST *xp) __attribute__((deprecated)); void ERR_load_X509_strings(void) __attribute__((deprecated)); # 186 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/pem.h" 1 3 4 # 64 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/e_os2.h" 1 3 4 # 56 "/usr/include/openssl/e_os2.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 57 "/usr/include/openssl/e_os2.h" 2 3 4 # 65 "/usr/include/openssl/pem.h" 2 3 4 # 73 "/usr/include/openssl/pem.h" 3 4 # 1 "/usr/include/openssl/pem2.h" 1 3 4 # 74 "/usr/include/openssl/pem.h" 2 3 4 # 143 "/usr/include/openssl/pem.h" 3 4 typedef struct PEM_Encode_Seal_st { EVP_ENCODE_CTX encode; EVP_MD_CTX md; EVP_CIPHER_CTX cipher; } PEM_ENCODE_SEAL_CTX; typedef struct pem_recip_st { char *name; X509_NAME *dn; int cipher; int key_enc; } PEM_USER; typedef struct pem_ctx_st { int type; struct { int version; int mode; } proc_type; char *domain; struct { int cipher; } DEK_info; PEM_USER *originator; int num_recipient; PEM_USER **recipient; STACK *x509_chain; EVP_MD *md; int md_enc; int md_len; char *md_data; EVP_CIPHER *dec; int key_len; unsigned char *key; int data_enc; int data_len; unsigned char *data; } PEM_CTX; # 567 "/usr/include/openssl/pem.h" 3 4 typedef int pem_password_cb(char *buf, int size, int rwflag, void *userdata); int PEM_get_EVP_CIPHER_INFO(char *header, EVP_CIPHER_INFO *cipher) __attribute__((deprecated)); int PEM_do_header (EVP_CIPHER_INFO *cipher, unsigned char *data,long *len, pem_password_cb *callback,void *u) __attribute__((deprecated)); int PEM_read_bio(BIO *bp, char **name, char **header, unsigned char **data,long *len) __attribute__((deprecated)); int PEM_write_bio(BIO *bp,const char *name,char *hdr,unsigned char *data, long len) __attribute__((deprecated)); int PEM_bytes_read_bio(unsigned char **pdata, long *plen, char **pnm, const char *name, BIO *bp, pem_password_cb *cb, void *u) __attribute__((deprecated)); void * PEM_ASN1_read_bio(d2i_of_void *d2i, const char *name, BIO *bp, void **x, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_ASN1_write_bio(i2d_of_void *i2d,const char *name,BIO *bp,char *x, const EVP_CIPHER *enc,unsigned char *kstr,int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); STACK * PEM_X509_INFO_read_bio(BIO *bp, STACK *sk, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_X509_INFO_write_bio(BIO *bp,X509_INFO *xi, EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cd, void *u) __attribute__((deprecated)); int PEM_read(FILE *fp, char **name, char **header, unsigned char **data,long *len) __attribute__((deprecated)); int PEM_write(FILE *fp,char *name,char *hdr,unsigned char *data,long len) __attribute__((deprecated)); void * PEM_ASN1_read(d2i_of_void *d2i, const char *name, FILE *fp, void **x, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_ASN1_write(i2d_of_void *i2d,const char *name,FILE *fp, char *x,const EVP_CIPHER *enc,unsigned char *kstr, int klen,pem_password_cb *callback, void *u) __attribute__((deprecated)); STACK * PEM_X509_INFO_read(FILE *fp, STACK *sk, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_SealInit(PEM_ENCODE_SEAL_CTX *ctx, EVP_CIPHER *type, EVP_MD *md_type, unsigned char **ek, int *ekl, unsigned char *iv, EVP_PKEY **pubk, int npubk) __attribute__((deprecated)); void PEM_SealUpdate(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *out, int *outl, unsigned char *in, int inl) __attribute__((deprecated)); int PEM_SealFinal(PEM_ENCODE_SEAL_CTX *ctx, unsigned char *sig,int *sigl, unsigned char *out, int *outl, EVP_PKEY *priv) __attribute__((deprecated)); void PEM_SignInit(EVP_MD_CTX *ctx, EVP_MD *type) __attribute__((deprecated)); void PEM_SignUpdate(EVP_MD_CTX *ctx,unsigned char *d,unsigned int cnt) __attribute__((deprecated)); int PEM_SignFinal(EVP_MD_CTX *ctx, unsigned char *sigret, unsigned int *siglen, EVP_PKEY *pkey) __attribute__((deprecated)); int PEM_def_callback(char *buf, int num, int w, void *key) __attribute__((deprecated)); void PEM_proc_type(char *buf, int type) __attribute__((deprecated)); void PEM_dek_info(char *buf, const char *type, int len, char *str) __attribute__((deprecated)); # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 641 "/usr/include/openssl/pem.h" 2 3 4 X509 *PEM_read_bio_X509(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509(BIO *bp, X509 *x); int PEM_write_X509(FILE *fp, X509 *x); X509 *PEM_read_bio_X509_AUX(BIO *bp, X509 **x, pem_password_cb *cb, void *u); X509 *PEM_read_X509_AUX(FILE *fp, X509 **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_AUX(BIO *bp, X509 *x); int PEM_write_X509_AUX(FILE *fp, X509 *x); X509_CERT_PAIR *PEM_read_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); X509_CERT_PAIR *PEM_read_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CERT_PAIR(BIO *bp, X509_CERT_PAIR *x); int PEM_write_X509_CERT_PAIR(FILE *fp, X509_CERT_PAIR *x); X509_REQ *PEM_read_bio_X509_REQ(BIO *bp, X509_REQ **x, pem_password_cb *cb, void *u); X509_REQ *PEM_read_X509_REQ(FILE *fp, X509_REQ **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_REQ(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ(FILE *fp, X509_REQ *x); int PEM_write_bio_X509_REQ_NEW(BIO *bp, X509_REQ *x); int PEM_write_X509_REQ_NEW(FILE *fp, X509_REQ *x); X509_CRL *PEM_read_bio_X509_CRL(BIO *bp, X509_CRL **x, pem_password_cb *cb, void *u); X509_CRL *PEM_read_X509_CRL(FILE *fp, X509_CRL **x, pem_password_cb *cb, void *u); int PEM_write_bio_X509_CRL(BIO *bp, X509_CRL *x); int PEM_write_X509_CRL(FILE *fp, X509_CRL *x); PKCS7 *PEM_read_bio_PKCS7(BIO *bp, PKCS7 **x, pem_password_cb *cb, void *u); PKCS7 *PEM_read_PKCS7(FILE *fp, PKCS7 **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS7(BIO *bp, PKCS7 *x); int PEM_write_PKCS7(FILE *fp, PKCS7 *x); NETSCAPE_CERT_SEQUENCE *PEM_read_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); NETSCAPE_CERT_SEQUENCE *PEM_read_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE **x, pem_password_cb *cb, void *u); int PEM_write_bio_NETSCAPE_CERT_SEQUENCE(BIO *bp, NETSCAPE_CERT_SEQUENCE *x); int PEM_write_NETSCAPE_CERT_SEQUENCE(FILE *fp, NETSCAPE_CERT_SEQUENCE *x); X509_SIG *PEM_read_bio_PKCS8(BIO *bp, X509_SIG **x, pem_password_cb *cb, void *u); X509_SIG *PEM_read_PKCS8(FILE *fp, X509_SIG **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8(BIO *bp, X509_SIG *x); int PEM_write_PKCS8(FILE *fp, X509_SIG *x); PKCS8_PRIV_KEY_INFO *PEM_read_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); PKCS8_PRIV_KEY_INFO *PEM_read_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO **x, pem_password_cb *cb, void *u); int PEM_write_bio_PKCS8_PRIV_KEY_INFO(BIO *bp, PKCS8_PRIV_KEY_INFO *x); int PEM_write_PKCS8_PRIV_KEY_INFO(FILE *fp, PKCS8_PRIV_KEY_INFO *x); RSA *PEM_read_bio_RSAPrivateKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPrivateKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPrivateKey(BIO *bp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_RSAPrivateKey(FILE *fp, RSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); RSA *PEM_read_bio_RSAPublicKey(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSAPublicKey(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSAPublicKey(BIO *bp, const RSA *x); int PEM_write_RSAPublicKey(FILE *fp, const RSA *x); RSA *PEM_read_bio_RSA_PUBKEY(BIO *bp, RSA **x, pem_password_cb *cb, void *u); RSA *PEM_read_RSA_PUBKEY(FILE *fp, RSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_RSA_PUBKEY(BIO *bp, RSA *x); int PEM_write_RSA_PUBKEY(FILE *fp, RSA *x); DSA *PEM_read_bio_DSAPrivateKey(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAPrivateKey(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAPrivateKey(BIO *bp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_DSAPrivateKey(FILE *fp, DSA *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); DSA *PEM_read_bio_DSA_PUBKEY(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSA_PUBKEY(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSA_PUBKEY(BIO *bp, DSA *x); int PEM_write_DSA_PUBKEY(FILE *fp, DSA *x); DSA *PEM_read_bio_DSAparams(BIO *bp, DSA **x, pem_password_cb *cb, void *u); DSA *PEM_read_DSAparams(FILE *fp, DSA **x, pem_password_cb *cb, void *u); int PEM_write_bio_DSAparams(BIO *bp, const DSA *x); int PEM_write_DSAparams(FILE *fp, const DSA *x); EC_GROUP *PEM_read_bio_ECPKParameters(BIO *bp, EC_GROUP **x, pem_password_cb *cb, void *u); EC_GROUP *PEM_read_ECPKParameters(FILE *fp, EC_GROUP **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPKParameters(BIO *bp, const EC_GROUP *x); int PEM_write_ECPKParameters(FILE *fp, const EC_GROUP *x); EC_KEY *PEM_read_bio_ECPrivateKey(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_ECPrivateKey(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_ECPrivateKey(BIO *bp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_ECPrivateKey(FILE *fp, EC_KEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EC_KEY *PEM_read_bio_EC_PUBKEY(BIO *bp, EC_KEY **x, pem_password_cb *cb, void *u); EC_KEY *PEM_read_EC_PUBKEY(FILE *fp, EC_KEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_EC_PUBKEY(BIO *bp, EC_KEY *x); int PEM_write_EC_PUBKEY(FILE *fp, EC_KEY *x); DH *PEM_read_bio_DHparams(BIO *bp, DH **x, pem_password_cb *cb, void *u); DH *PEM_read_DHparams(FILE *fp, DH **x, pem_password_cb *cb, void *u); int PEM_write_bio_DHparams(BIO *bp, const DH *x); int PEM_write_DHparams(FILE *fp, const DH *x); EVP_PKEY *PEM_read_bio_PrivateKey(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PrivateKey(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PrivateKey(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); int PEM_write_PrivateKey(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, unsigned char *kstr, int klen, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_bio_PUBKEY(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u); EVP_PKEY *PEM_read_PUBKEY(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u); int PEM_write_bio_PUBKEY(BIO *bp, EVP_PKEY *x); int PEM_write_PUBKEY(FILE *fp, EVP_PKEY *x); int PEM_write_bio_PKCS8PrivateKey_nid(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_write_bio_PKCS8PrivateKey(BIO *, EVP_PKEY *, const EVP_CIPHER *, char *, int, pem_password_cb *, void *) __attribute__((deprecated)); int i2d_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); int i2d_PKCS8PrivateKey_nid_bio(BIO *bp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); EVP_PKEY *d2i_PKCS8PrivateKey_bio(BIO *bp, EVP_PKEY **x, pem_password_cb *cb, void *u) __attribute__((deprecated)); int i2d_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY *x, const EVP_CIPHER *enc, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); int i2d_PKCS8PrivateKey_nid_fp(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_write_PKCS8PrivateKey_nid(FILE *fp, EVP_PKEY *x, int nid, char *kstr, int klen, pem_password_cb *cb, void *u) __attribute__((deprecated)); EVP_PKEY *d2i_PKCS8PrivateKey_fp(FILE *fp, EVP_PKEY **x, pem_password_cb *cb, void *u) __attribute__((deprecated)); int PEM_write_PKCS8PrivateKey(FILE *fp,EVP_PKEY *x,const EVP_CIPHER *enc, char *kstr,int klen, pem_password_cb *cd, void *u) __attribute__((deprecated)); # 731 "/usr/include/openssl/pem.h" 3 4 void ERR_load_PEM_strings(void) __attribute__((deprecated)); # 192 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/hmac.h" 1 3 4 # 63 "/usr/include/openssl/hmac.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 64 "/usr/include/openssl/hmac.h" 2 3 4 # 77 "/usr/include/openssl/hmac.h" 3 4 typedef struct hmac_ctx_st { const EVP_MD *md; EVP_MD_CTX md_ctx; EVP_MD_CTX i_ctx; EVP_MD_CTX o_ctx; unsigned int key_length; unsigned char key[128]; } HMAC_CTX; void HMAC_CTX_init(HMAC_CTX *ctx) __attribute__((deprecated)); void HMAC_CTX_cleanup(HMAC_CTX *ctx) __attribute__((deprecated)); void HMAC_Init(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md) __attribute__((deprecated)); void HMAC_Init_ex(HMAC_CTX *ctx, const void *key, int len, const EVP_MD *md, ENGINE *impl) __attribute__((deprecated)); void HMAC_Update(HMAC_CTX *ctx, const unsigned char *data, size_t len) __attribute__((deprecated)); void HMAC_Final(HMAC_CTX *ctx, unsigned char *md, unsigned int *len) __attribute__((deprecated)); unsigned char *HMAC(const EVP_MD *evp_md, const void *key, int key_len, const unsigned char *d, size_t n, unsigned char *md, unsigned int *md_len) __attribute__((deprecated)); void HMAC_CTX_set_flags(HMAC_CTX *ctx, unsigned long flags) __attribute__((deprecated)); # 193 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/kssl.h" 1 3 4 # 68 "/usr/include/openssl/kssl.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 69 "/usr/include/openssl/kssl.h" 2 3 4 # 195 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/symhacks.h" 1 3 4 # 197 "/usr/include/openssl/ssl.h" 2 3 4 # 348 "/usr/include/openssl/ssl.h" 3 4 typedef struct ssl_st *ssl_crock_st; typedef struct ssl_cipher_st { int valid; const char *name; unsigned long id; unsigned long algorithms; unsigned long algo_strength; unsigned long algorithm2; int strength_bits; int alg_bits; unsigned long mask; unsigned long mask_strength; } SSL_CIPHER; typedef struct ssl_method_st { int version; int (*ssl_new)(SSL *s) __attribute__((deprecated)); void (*ssl_clear)(SSL *s) __attribute__((deprecated)); void (*ssl_free)(SSL *s) __attribute__((deprecated)); int (*ssl_accept)(SSL *s) __attribute__((deprecated)); int (*ssl_connect)(SSL *s) __attribute__((deprecated)); int (*ssl_read)(SSL *s,void *buf,int len) __attribute__((deprecated)); int (*ssl_peek)(SSL *s,void *buf,int len) __attribute__((deprecated)); int (*ssl_write)(SSL *s,const void *buf,int len) __attribute__((deprecated)); int (*ssl_shutdown)(SSL *s) __attribute__((deprecated)); int (*ssl_renegotiate)(SSL *s) __attribute__((deprecated)); int (*ssl_renegotiate_check)(SSL *s) __attribute__((deprecated)); long (*ssl_get_message)(SSL *s, int st1, int stn, int mt, long max, int *ok) __attribute__((deprecated)); int (*ssl_read_bytes)(SSL *s, int type, unsigned char *buf, int len, int peek) __attribute__((deprecated)); int (*ssl_write_bytes)(SSL *s, int type, const void *buf_, int len) __attribute__((deprecated)); int (*ssl_dispatch_alert)(SSL *s) __attribute__((deprecated)); long (*ssl_ctrl)(SSL *s,int cmd,long larg,void *parg) __attribute__((deprecated)); long (*ssl_ctx_ctrl)(SSL_CTX *ctx,int cmd,long larg,void *parg) __attribute__((deprecated)); SSL_CIPHER *(*get_cipher_by_char)(const unsigned char *ptr) __attribute__((deprecated)); int (*put_cipher_by_char)(const SSL_CIPHER *cipher,unsigned char *ptr) __attribute__((deprecated)); int (*ssl_pending)(const SSL *s) __attribute__((deprecated)); int (*num_ciphers)(void) __attribute__((deprecated)); SSL_CIPHER *(*get_cipher)(unsigned ncipher) __attribute__((deprecated)); struct ssl_method_st *(*get_ssl_method)(int version) __attribute__((deprecated)); long (*get_timeout)(void) __attribute__((deprecated)); struct ssl3_enc_method *ssl3_enc; int (*ssl_version)(void) __attribute__((deprecated)); long (*ssl_callback_ctrl)(SSL *s, int cb_id, void (*fp)(void)) __attribute__((deprecated)); long (*ssl_ctx_callback_ctrl)(SSL_CTX *s, int cb_id, void (*fp)(void)) __attribute__((deprecated)); } SSL_METHOD; # 422 "/usr/include/openssl/ssl.h" 3 4 typedef struct ssl_session_st { int ssl_version; unsigned int key_arg_length; unsigned char key_arg[8]; int master_key_length; unsigned char master_key[48]; unsigned int session_id_length; unsigned char session_id[32]; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int not_resumable; struct sess_cert_st *sess_cert; X509 *peer; long verify_result; int references; long timeout; long time; int compress_meth; SSL_CIPHER *cipher; unsigned long cipher_id; STACK *ciphers; CRYPTO_EX_DATA ex_data; struct ssl_session_st *prev,*next; char *tlsext_hostname; unsigned char *tlsext_tick; size_t tlsext_ticklen; long tlsext_tick_lifetime_hint; } SSL_SESSION; # 612 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_msg_callback(SSL_CTX *ctx, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)) __attribute__((deprecated)); void SSL_set_msg_callback(SSL *ssl, void (*cb)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg)) __attribute__((deprecated)); # 640 "/usr/include/openssl/ssl.h" 3 4 typedef int (*GEN_SESSION_CB)(const SSL *ssl, unsigned char *id, unsigned int *id_len); typedef struct ssl_comp_st { int id; const char *name; COMP_METHOD *method; } SSL_COMP; struct ssl_ctx_st { SSL_METHOD *method; STACK *cipher_list; STACK *cipher_list_by_id; struct x509_store_st *cert_store; struct lhash_st *sessions; unsigned long session_cache_size; struct ssl_session_st *session_cache_head; struct ssl_session_st *session_cache_tail; int session_cache_mode; long session_timeout; # 692 "/usr/include/openssl/ssl.h" 3 4 int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess) __attribute__((deprecated)); void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess) __attribute__((deprecated)); SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy) __attribute__((deprecated)); struct { int sess_connect; int sess_connect_renegotiate; int sess_connect_good; int sess_accept; int sess_accept_renegotiate; int sess_accept_good; int sess_miss; int sess_timeout; int sess_cache_full; int sess_hit; int sess_cb_hit; } stats; int references; int (*app_verify_callback)(X509_STORE_CTX *, void *) __attribute__((deprecated)); void *app_verify_arg; pem_password_cb *default_passwd_callback; void *default_passwd_callback_userdata; int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey) __attribute__((deprecated)); int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len) __attribute__((deprecated)); int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len) __attribute__((deprecated)); CRYPTO_EX_DATA ex_data; const EVP_MD *rsa_md5; const EVP_MD *md5; const EVP_MD *sha1; STACK *extra_certs; STACK *comp_methods; void (*info_callback)(const SSL *ssl,int type,int val) __attribute__((deprecated)); STACK *client_CA; unsigned long options; unsigned long mode; long max_cert_list; struct cert_st *cert; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg) __attribute__((deprecated)); void *msg_callback_arg; int verify_mode; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; int (*default_verify_callback)(int ok,X509_STORE_CTX *ctx) __attribute__((deprecated)); GEN_SESSION_CB generate_session_id; X509_VERIFY_PARAM *param; int quiet_shutdown; ENGINE *client_cert_engine; int (*tlsext_servername_callback)(SSL*, int *, void *) __attribute__((deprecated)); void *tlsext_servername_arg; unsigned char tlsext_tick_key_name[16]; unsigned char tlsext_tick_hmac_key[16]; unsigned char tlsext_tick_aes_key[16]; int (*tlsext_ticket_key_cb)(SSL *ssl, unsigned char *name, unsigned char *iv, EVP_CIPHER_CTX *ectx, HMAC_CTX *hctx, int enc) __attribute__((deprecated)); int (*tlsext_status_cb)(SSL *ssl, void *arg) __attribute__((deprecated)); void *tlsext_status_arg; }; # 829 "/usr/include/openssl/ssl.h" 3 4 struct lhash_st *SSL_CTX_sessions(SSL_CTX *ctx) __attribute__((deprecated)); # 855 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_sess_set_new_cb(SSL_CTX *ctx, int (*new_session_cb)(struct ssl_st *ssl,SSL_SESSION *sess)) __attribute__((deprecated)); int (*SSL_CTX_sess_get_new_cb(SSL_CTX *ctx))(struct ssl_st *ssl, SSL_SESSION *sess) __attribute__((deprecated)); void SSL_CTX_sess_set_remove_cb(SSL_CTX *ctx, void (*remove_session_cb)(struct ssl_ctx_st *ctx,SSL_SESSION *sess)) __attribute__((deprecated)); void (*SSL_CTX_sess_get_remove_cb(SSL_CTX *ctx))(struct ssl_ctx_st *ctx, SSL_SESSION *sess) __attribute__((deprecated)); void SSL_CTX_sess_set_get_cb(SSL_CTX *ctx, SSL_SESSION *(*get_session_cb)(struct ssl_st *ssl, unsigned char *data,int len,int *copy)) __attribute__((deprecated)); SSL_SESSION *(*SSL_CTX_sess_get_get_cb(SSL_CTX *ctx))(struct ssl_st *ssl, unsigned char *Data, int len, int *copy) __attribute__((deprecated)); void SSL_CTX_set_info_callback(SSL_CTX *ctx, void (*cb)(const SSL *ssl,int type,int val)) __attribute__((deprecated)); void (*SSL_CTX_get_info_callback(SSL_CTX *ctx))(const SSL *ssl,int type,int val) __attribute__((deprecated)); void SSL_CTX_set_client_cert_cb(SSL_CTX *ctx, int (*client_cert_cb)(SSL *ssl, X509 **x509, EVP_PKEY **pkey)) __attribute__((deprecated)); int (*SSL_CTX_get_client_cert_cb(SSL_CTX *ctx))(SSL *ssl, X509 **x509, EVP_PKEY **pkey) __attribute__((deprecated)); int SSL_CTX_set_client_cert_engine(SSL_CTX *ctx, ENGINE *e) __attribute__((deprecated)); void SSL_CTX_set_cookie_generate_cb(SSL_CTX *ctx, int (*app_gen_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int *cookie_len)) __attribute__((deprecated)); void SSL_CTX_set_cookie_verify_cb(SSL_CTX *ctx, int (*app_verify_cookie_cb)(SSL *ssl, unsigned char *cookie, unsigned int cookie_len)) __attribute__((deprecated)); # 882 "/usr/include/openssl/ssl.h" 3 4 struct ssl_st { int version; int type; SSL_METHOD *method; BIO *rbio; BIO *wbio; BIO *bbio; # 910 "/usr/include/openssl/ssl.h" 3 4 int rwstate; int in_handshake; int (*handshake_func)(SSL *) __attribute__((deprecated)); # 924 "/usr/include/openssl/ssl.h" 3 4 int server; int new_session; int quiet_shutdown; int shutdown; int state; int rstate; BUF_MEM *init_buf; void *init_msg; int init_num; int init_off; unsigned char *packet; unsigned int packet_length; struct ssl2_state_st *s2; struct ssl3_state_st *s3; struct dtls1_state_st *d1; int read_ahead; void (*msg_callback)(int write_p, int version, int content_type, const void *buf, size_t len, SSL *ssl, void *arg) __attribute__((deprecated)); void *msg_callback_arg; int hit; X509_VERIFY_PARAM *param; STACK *cipher_list; STACK *cipher_list_by_id; EVP_CIPHER_CTX *enc_read_ctx; const EVP_MD *read_hash; COMP_CTX *expand; EVP_CIPHER_CTX *enc_write_ctx; const EVP_MD *write_hash; COMP_CTX *compress; # 994 "/usr/include/openssl/ssl.h" 3 4 struct cert_st *cert; unsigned int sid_ctx_length; unsigned char sid_ctx[32]; SSL_SESSION *session; GEN_SESSION_CB generate_session_id; int verify_mode; int (*verify_callback)(int ok,X509_STORE_CTX *ctx) __attribute__((deprecated)); void (*info_callback)(const SSL *ssl,int type,int val) __attribute__((deprecated)); int error; int error_code; SSL_CTX *ctx; int debug; long verify_result; CRYPTO_EX_DATA ex_data; STACK *client_CA; int references; unsigned long options; unsigned long mode; long max_cert_list; int first_packet; int client_version; void (*tlsext_debug_cb)(SSL *s, int client_server, int type, unsigned char *data, int len, void *arg) __attribute__((deprecated)); void *tlsext_debug_arg; char *tlsext_hostname; int servername_done; int tlsext_status_type; int tlsext_status_expected; STACK *tlsext_ocsp_ids; X509_EXTENSIONS *tlsext_ocsp_exts; unsigned char *tlsext_ocsp_resp; int tlsext_ocsp_resplen; int tlsext_ticket_expected; SSL_CTX * initial_ctx; }; # 1 "/usr/include/openssl/ssl2.h" 1 3 4 # 158 "/usr/include/openssl/ssl2.h" 3 4 typedef struct ssl2_state_st { int three_byte_header; int clear_text; int escape; int ssl2_rollback; unsigned int wnum; int wpend_tot; const unsigned char *wpend_buf; int wpend_off; int wpend_len; int wpend_ret; int rbuf_left; int rbuf_offs; unsigned char *rbuf; unsigned char *wbuf; unsigned char *write_ptr; unsigned int padding; unsigned int rlength; int ract_data_length; unsigned int wlength; int wact_data_length; unsigned char *ract_data; unsigned char *wact_data; unsigned char *mac_data; unsigned char *read_key; unsigned char *write_key; unsigned int challenge_length; unsigned char challenge[32]; unsigned int conn_id_length; unsigned char conn_id[16]; unsigned int key_material_length; unsigned char key_material[24*2]; unsigned long read_sequence; unsigned long write_sequence; struct { unsigned int conn_id_length; unsigned int cert_type; unsigned int cert_length; unsigned int csl; unsigned int clear; unsigned int enc; unsigned char ccl[32]; unsigned int cipher_spec_length; unsigned int session_id_length; unsigned int clen; unsigned int rlen; } tmp; } SSL2_STATE; # 1078 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl3.h" 1 3 4 # 125 "/usr/include/openssl/ssl3.h" 3 4 # 1 "/usr/include/openssl/ssl.h" 1 3 4 # 126 "/usr/include/openssl/ssl3.h" 2 3 4 # 1 "/usr/include/openssl/pq_compat.h" 1 3 4 # 63 "/usr/include/openssl/pq_compat.h" 3 4 # 1 "/usr/include/openssl/opensslconf.h" 1 3 4 # 64 "/usr/include/openssl/pq_compat.h" 2 3 4 # 127 "/usr/include/openssl/ssl3.h" 2 3 4 # 302 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_record_st { int type; unsigned int length; unsigned int off; unsigned char *data; unsigned char *input; unsigned char *comp; unsigned long epoch; unsigned long seq_num; } SSL3_RECORD; typedef struct ssl3_buffer_st { unsigned char *buf; size_t len; int offset; int left; } SSL3_BUFFER; # 354 "/usr/include/openssl/ssl3.h" 3 4 typedef struct ssl3_state_st { long flags; int delay_buf_pop_ret; unsigned char read_sequence[8]; unsigned char read_mac_secret[64]; unsigned char write_sequence[8]; unsigned char write_mac_secret[64]; unsigned char server_random[32]; unsigned char client_random[32]; int need_empty_fragments; int empty_fragment_done; SSL3_BUFFER rbuf; SSL3_BUFFER wbuf; SSL3_RECORD rrec; SSL3_RECORD wrec; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[4]; unsigned int handshake_fragment_len; unsigned int wnum; int wpend_tot; int wpend_type; int wpend_ret; const unsigned char *wpend_buf; EVP_MD_CTX finish_dgst1; EVP_MD_CTX finish_dgst2; int change_cipher_spec; int warn_alert; int fatal_alert; int alert_dispatch; unsigned char send_alert[2]; int renegotiate; int total_renegotiations; int num_renegotiations; int in_read_app_data; struct { unsigned char cert_verify_md[64*2]; unsigned char finish_md[64*2]; int finish_md_len; unsigned char peer_finish_md[64*2]; int peer_finish_md_len; unsigned long message_size; int message_type; SSL_CIPHER *new_cipher; DH *dh; EC_KEY *ecdh; int next_state; int reuse_message; int cert_req; int ctype_num; char ctype[7]; STACK *ca_names; int use_rsa_tmp; int key_block_length; unsigned char *key_block; const EVP_CIPHER *new_sym_enc; const EVP_MD *new_hash; const SSL_COMP *new_compression; int cert_request; } tmp; unsigned char previous_client_finished[64]; unsigned char previous_client_finished_len; unsigned char previous_server_finished[64]; unsigned char previous_server_finished_len; int send_connection_binding; char is_probably_safari; } SSL3_STATE; # 1079 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/tls1.h" 1 3 4 # 154 "/usr/include/openssl/tls1.h" 3 4 const char *SSL_get_servername(const SSL *s, const int type) __attribute__((deprecated)); int SSL_get_servername_type(const SSL *s) __attribute__((deprecated)); # 1080 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/dtls1.h" 1 3 4 # 64 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/openssl/pqueue.h" 1 3 4 # 67 "/usr/include/openssl/pqueue.h" 3 4 # 1 "/usr/include/string.h" 1 3 4 # 69 "/usr/include/string.h" 3 4 void *memchr(const void *, int, size_t); int memcmp(const void *, const void *, size_t); void *memcpy(void *, const void *, size_t); void *memmove(void *, const void *, size_t); void *memset(void *, int, size_t); char *strcat(char *, const char *); char *strchr(const char *, int); int strcmp(const char *, const char *); int strcoll(const char *, const char *); char *strcpy(char *, const char *); size_t strcspn(const char *, const char *); char *strerror(int) __asm("_" "strerror" ); size_t strlen(const char *); char *strncat(char *, const char *, size_t); int strncmp(const char *, const char *, size_t); char *strncpy(char *, const char *, size_t); char *strpbrk(const char *, const char *); char *strrchr(const char *, int); size_t strspn(const char *, const char *); char *strstr(const char *, const char *); char *strtok(char *, const char *); size_t strxfrm(char *, const char *, size_t); # 103 "/usr/include/string.h" 3 4 char *strtok_r(char *, const char *, char **); # 115 "/usr/include/string.h" 3 4 int strerror_r(int, char *, size_t); char *strdup(const char *); void *memccpy(void *, const void *, int, size_t); # 129 "/usr/include/string.h" 3 4 char *stpcpy(char *, const char *); char *stpncpy(char *, const char *, size_t) ; char *strndup(const char *, size_t) ; size_t strnlen(const char *, size_t) ; char *strsignal(int sig); # 144 "/usr/include/string.h" 3 4 errno_t memset_s(void *, rsize_t, int, rsize_t) ; void *memmem(const void *, size_t, const void *, size_t) ; void memset_pattern4(void *, const void *, size_t) ; void memset_pattern8(void *, const void *, size_t) ; void memset_pattern16(void *, const void *, size_t) ; char *strcasestr(const char *, const char *); char *strnstr(const char *, const char *, size_t); size_t strlcat(char *, const char *, size_t); size_t strlcpy(char *, const char *, size_t); void strmode(int, char *); char *strsep(char **, const char *); void swab(const void * restrict, void * restrict, ssize_t); # 1 "/usr/include/strings.h" 1 3 4 # 67 "/usr/include/strings.h" 3 4 int bcmp(const void *, const void *, size_t) ; void bcopy(const void *, void *, size_t) ; void bzero(void *, size_t) ; char *index(const char *, int) ; char *rindex(const char *, int) ; int ffs(int); int strcasecmp(const char *, const char *); int strncasecmp(const char *, const char *, size_t); int ffsl(long) ; int ffsll(long long) ; int fls(int) ; int flsl(long) ; int flsll(long long) ; # 1 "/usr/include/string.h" 1 3 4 # 93 "/usr/include/strings.h" 2 3 4 # 177 "/usr/include/string.h" 2 3 4 # 186 "/usr/include/string.h" 3 4 # 1 "/usr/include/secure/_string.h" 1 3 4 # 187 "/usr/include/string.h" 2 3 4 # 68 "/usr/include/openssl/pqueue.h" 2 3 4 typedef struct _pqueue *pqueue; typedef struct _pitem { unsigned long priority; void *data; struct _pitem *next; } pitem; typedef struct _pitem *piterator; pitem *pitem_new(unsigned long priority, void *data) __attribute__((deprecated)); void pitem_free(pitem *item) __attribute__((deprecated)); pqueue pqueue_new(void) __attribute__((deprecated)); void pqueue_free(pqueue pq) __attribute__((deprecated)); pitem *pqueue_insert(pqueue pq, pitem *item) __attribute__((deprecated)); pitem *pqueue_peek(pqueue pq) __attribute__((deprecated)); pitem *pqueue_pop(pqueue pq) __attribute__((deprecated)); pitem *pqueue_find(pqueue pq, unsigned long priority) __attribute__((deprecated)); pitem *pqueue_iterator(pqueue pq) __attribute__((deprecated)); pitem *pqueue_next(piterator *iter) __attribute__((deprecated)); void pqueue_print(pqueue pq) __attribute__((deprecated)); int pqueue_size(pqueue pq) __attribute__((deprecated)); # 65 "/usr/include/openssl/dtls1.h" 2 3 4 # 75 "/usr/include/openssl/dtls1.h" 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 86 "/usr/include/sys/time.h" 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 124 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 167 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) ; int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * restrict, void * restrict); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 194 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * restrict, struct itimerval * restrict); int utimes(const char *, const struct timeval *); # 76 "/usr/include/openssl/dtls1.h" 2 3 4 # 111 "/usr/include/openssl/dtls1.h" 3 4 typedef struct dtls1_bitmap_st { unsigned long map; unsigned long length; unsigned long max_seq_num; } DTLS1_BITMAP; struct dtls1_retransmit_state { EVP_CIPHER_CTX *enc_write_ctx; const EVP_MD *write_hash; COMP_CTX *compress; SSL_SESSION *session; unsigned short epoch; }; struct hm_header_st { unsigned char type; unsigned long msg_len; unsigned short seq; unsigned long frag_off; unsigned long frag_len; unsigned int is_ccs; struct dtls1_retransmit_state saved_retransmit_state; }; struct ccs_header_st { unsigned char type; unsigned short seq; }; struct dtls1_timeout_st { unsigned int read_timeouts; unsigned int write_timeouts; unsigned int num_alerts; }; typedef struct record_pqueue_st { unsigned short epoch; pqueue q; } record_pqueue; typedef struct hm_fragment_st { struct hm_header_st msg_header; unsigned char *fragment; unsigned char *reassembly; } hm_fragment; typedef struct dtls1_state_st { unsigned int send_cookie; unsigned char cookie[256]; unsigned char rcvd_cookie[256]; unsigned int cookie_len; unsigned short r_epoch; unsigned short w_epoch; DTLS1_BITMAP bitmap; DTLS1_BITMAP next_bitmap; unsigned short handshake_write_seq; unsigned short next_handshake_write_seq; unsigned short handshake_read_seq; unsigned char last_write_sequence[8]; record_pqueue unprocessed_rcds; record_pqueue processed_rcds; pqueue buffered_messages; pqueue sent_messages; record_pqueue buffered_app_data; unsigned int listen; unsigned int mtu; struct hm_header_st w_msg_hdr; struct hm_header_st r_msg_hdr; struct dtls1_timeout_st timeout; struct timeval next_timeout; unsigned short timeout_duration; unsigned char alert_fragment[2]; unsigned int alert_fragment_len; unsigned char handshake_fragment[12]; unsigned int handshake_fragment_len; unsigned int retransmitting; unsigned int change_cipher_spec_ok; } DTLS1_STATE; typedef struct dtls1_record_data_st { unsigned char *packet; unsigned int packet_length; SSL3_BUFFER rbuf; SSL3_RECORD rrec; } DTLS1_RECORD_DATA; # 1081 "/usr/include/openssl/ssl.h" 2 3 4 # 1 "/usr/include/openssl/ssl23.h" 1 3 4 # 1082 "/usr/include/openssl/ssl.h" 2 3 4 # 1142 "/usr/include/openssl/ssl.h" 3 4 size_t SSL_get_finished(const SSL *s, void *buf, size_t count) __attribute__((deprecated)); size_t SSL_get_peer_finished(const SSL *s, void *buf, size_t count) __attribute__((deprecated)); # 1352 "/usr/include/openssl/ssl.h" 3 4 BIO_METHOD *BIO_f_ssl(void) __attribute__((deprecated)); BIO *BIO_new_ssl(SSL_CTX *ctx,int client) __attribute__((deprecated)); BIO *BIO_new_ssl_connect(SSL_CTX *ctx) __attribute__((deprecated)); BIO *BIO_new_buffer_ssl_connect(SSL_CTX *ctx) __attribute__((deprecated)); int BIO_ssl_copy_session_id(BIO *to,BIO *from) __attribute__((deprecated)); void BIO_ssl_shutdown(BIO *ssl_bio) __attribute__((deprecated)); int SSL_CTX_set_cipher_list(SSL_CTX *,const char *str) __attribute__((deprecated)); SSL_CTX *SSL_CTX_new(SSL_METHOD *meth) __attribute__((deprecated)); void SSL_CTX_free(SSL_CTX *) __attribute__((deprecated)); long SSL_CTX_set_timeout(SSL_CTX *ctx,long t) __attribute__((deprecated)); long SSL_CTX_get_timeout(const SSL_CTX *ctx) __attribute__((deprecated)); X509_STORE *SSL_CTX_get_cert_store(const SSL_CTX *) __attribute__((deprecated)); void SSL_CTX_set_cert_store(SSL_CTX *,X509_STORE *) __attribute__((deprecated)); int SSL_want(const SSL *s) __attribute__((deprecated)); int SSL_clear(SSL *s) __attribute__((deprecated)); void SSL_CTX_flush_sessions(SSL_CTX *ctx,long tm) __attribute__((deprecated)); SSL_CIPHER *SSL_get_current_cipher(const SSL *s) __attribute__((deprecated)); int SSL_CIPHER_get_bits(const SSL_CIPHER *c,int *alg_bits) __attribute__((deprecated)); char * SSL_CIPHER_get_version(const SSL_CIPHER *c) __attribute__((deprecated)); const char * SSL_CIPHER_get_name(const SSL_CIPHER *c) __attribute__((deprecated)); int SSL_get_fd(const SSL *s) __attribute__((deprecated)); int SSL_get_rfd(const SSL *s) __attribute__((deprecated)); int SSL_get_wfd(const SSL *s) __attribute__((deprecated)); const char * SSL_get_cipher_list(const SSL *s,int n) __attribute__((deprecated)); char * SSL_get_shared_ciphers(const SSL *s, char *buf, int len) __attribute__((deprecated)); int SSL_get_read_ahead(const SSL * s) __attribute__((deprecated)); int SSL_pending(const SSL *s) __attribute__((deprecated)); int SSL_set_fd(SSL *s, int fd) __attribute__((deprecated)); int SSL_set_rfd(SSL *s, int fd) __attribute__((deprecated)); int SSL_set_wfd(SSL *s, int fd) __attribute__((deprecated)); void SSL_set_bio(SSL *s, BIO *rbio,BIO *wbio) __attribute__((deprecated)); BIO * SSL_get_rbio(const SSL *s) __attribute__((deprecated)); BIO * SSL_get_wbio(const SSL *s) __attribute__((deprecated)); int SSL_set_cipher_list(SSL *s, const char *str) __attribute__((deprecated)); void SSL_set_read_ahead(SSL *s, int yes) __attribute__((deprecated)); int SSL_get_verify_mode(const SSL *s) __attribute__((deprecated)); int SSL_get_verify_depth(const SSL *s) __attribute__((deprecated)); int (*SSL_get_verify_callback(const SSL *s))(int,X509_STORE_CTX *) __attribute__((deprecated)); void SSL_set_verify(SSL *s, int mode, int (*callback)(int ok,X509_STORE_CTX *ctx)) __attribute__((deprecated)); void SSL_set_verify_depth(SSL *s, int depth) __attribute__((deprecated)); int SSL_use_RSAPrivateKey(SSL *ssl, RSA *rsa) __attribute__((deprecated)); int SSL_use_RSAPrivateKey_ASN1(SSL *ssl, unsigned char *d, long len) __attribute__((deprecated)); int SSL_use_PrivateKey(SSL *ssl, EVP_PKEY *pkey) __attribute__((deprecated)); int SSL_use_PrivateKey_ASN1(int pk,SSL *ssl, const unsigned char *d, long len) __attribute__((deprecated)); int SSL_use_certificate(SSL *ssl, X509 *x) __attribute__((deprecated)); int SSL_use_certificate_ASN1(SSL *ssl, const unsigned char *d, int len) __attribute__((deprecated)); int SSL_use_RSAPrivateKey_file(SSL *ssl, const char *file, int type) __attribute__((deprecated)); int SSL_use_PrivateKey_file(SSL *ssl, const char *file, int type) __attribute__((deprecated)); int SSL_use_certificate_file(SSL *ssl, const char *file, int type) __attribute__((deprecated)); int SSL_CTX_use_RSAPrivateKey_file(SSL_CTX *ctx, const char *file, int type) __attribute__((deprecated)); int SSL_CTX_use_PrivateKey_file(SSL_CTX *ctx, const char *file, int type) __attribute__((deprecated)); int SSL_CTX_use_certificate_file(SSL_CTX *ctx, const char *file, int type) __attribute__((deprecated)); int SSL_CTX_use_certificate_chain_file(SSL_CTX *ctx, const char *file) __attribute__((deprecated)); STACK *SSL_load_client_CA_file(const char *file) __attribute__((deprecated)); int SSL_add_file_cert_subjects_to_stack(STACK *stackCAs, const char *file) __attribute__((deprecated)); int SSL_add_dir_cert_subjects_to_stack(STACK *stackCAs, const char *dir) __attribute__((deprecated)); void SSL_load_error_strings(void ) __attribute__((deprecated)); const char *SSL_state_string(const SSL *s) __attribute__((deprecated)); const char *SSL_rstate_string(const SSL *s) __attribute__((deprecated)); const char *SSL_state_string_long(const SSL *s) __attribute__((deprecated)); const char *SSL_rstate_string_long(const SSL *s) __attribute__((deprecated)); long SSL_SESSION_get_time(const SSL_SESSION *s) __attribute__((deprecated)); long SSL_SESSION_set_time(SSL_SESSION *s, long t) __attribute__((deprecated)); long SSL_SESSION_get_timeout(const SSL_SESSION *s) __attribute__((deprecated)); long SSL_SESSION_set_timeout(SSL_SESSION *s, long t) __attribute__((deprecated)); void SSL_copy_session_id(SSL *to,const SSL *from) __attribute__((deprecated)); SSL_SESSION *SSL_SESSION_new(void) __attribute__((deprecated)); unsigned long SSL_SESSION_hash(const SSL_SESSION *a) __attribute__((deprecated)); int SSL_SESSION_cmp(const SSL_SESSION *a,const SSL_SESSION *b) __attribute__((deprecated)); const unsigned char *SSL_SESSION_get_id(const SSL_SESSION *s, unsigned int *len) __attribute__((deprecated)); int SSL_SESSION_print_fp(FILE *fp,const SSL_SESSION *ses) __attribute__((deprecated)); int SSL_SESSION_print(BIO *fp,const SSL_SESSION *ses) __attribute__((deprecated)); void SSL_SESSION_free(SSL_SESSION *ses) __attribute__((deprecated)); int i2d_SSL_SESSION(SSL_SESSION *in,unsigned char **pp) __attribute__((deprecated)); int SSL_set_session(SSL *to, SSL_SESSION *session) __attribute__((deprecated)); int SSL_CTX_add_session(SSL_CTX *s, SSL_SESSION *c) __attribute__((deprecated)); int SSL_CTX_remove_session(SSL_CTX *,SSL_SESSION *c) __attribute__((deprecated)); int SSL_CTX_set_generate_session_id(SSL_CTX *, GEN_SESSION_CB) __attribute__((deprecated)); int SSL_set_generate_session_id(SSL *, GEN_SESSION_CB) __attribute__((deprecated)); int SSL_has_matching_session_id(const SSL *ssl, const unsigned char *id, unsigned int id_len) __attribute__((deprecated)); SSL_SESSION *d2i_SSL_SESSION(SSL_SESSION **a,const unsigned char **pp, long length) __attribute__((deprecated)); X509 * SSL_get_peer_certificate(const SSL *s) __attribute__((deprecated)); STACK *SSL_get_peer_cert_chain(const SSL *s) __attribute__((deprecated)); int SSL_CTX_get_verify_mode(const SSL_CTX *ctx) __attribute__((deprecated)); int SSL_CTX_get_verify_depth(const SSL_CTX *ctx) __attribute__((deprecated)); int (*SSL_CTX_get_verify_callback(const SSL_CTX *ctx))(int,X509_STORE_CTX *) __attribute__((deprecated)); void SSL_CTX_set_verify(SSL_CTX *ctx,int mode, int (*callback)(int, X509_STORE_CTX *)) __attribute__((deprecated)); void SSL_CTX_set_verify_depth(SSL_CTX *ctx,int depth) __attribute__((deprecated)); void SSL_CTX_set_cert_verify_callback(SSL_CTX *ctx, int (*cb)(X509_STORE_CTX *,void *), void *arg) __attribute__((deprecated)); int SSL_CTX_use_RSAPrivateKey(SSL_CTX *ctx, RSA *rsa) __attribute__((deprecated)); int SSL_CTX_use_RSAPrivateKey_ASN1(SSL_CTX *ctx, const unsigned char *d, long len) __attribute__((deprecated)); int SSL_CTX_use_PrivateKey(SSL_CTX *ctx, EVP_PKEY *pkey) __attribute__((deprecated)); int SSL_CTX_use_PrivateKey_ASN1(int pk,SSL_CTX *ctx, const unsigned char *d, long len) __attribute__((deprecated)); int SSL_CTX_use_certificate(SSL_CTX *ctx, X509 *x) __attribute__((deprecated)); int SSL_CTX_use_certificate_ASN1(SSL_CTX *ctx, int len, const unsigned char *d) __attribute__((deprecated)); void SSL_CTX_set_default_passwd_cb(SSL_CTX *ctx, pem_password_cb *cb) __attribute__((deprecated)); void SSL_CTX_set_default_passwd_cb_userdata(SSL_CTX *ctx, void *u) __attribute__((deprecated)); int SSL_CTX_check_private_key(const SSL_CTX *ctx) __attribute__((deprecated)); int SSL_check_private_key(const SSL *ctx) __attribute__((deprecated)); int SSL_CTX_set_session_id_context(SSL_CTX *ctx,const unsigned char *sid_ctx, unsigned int sid_ctx_len) __attribute__((deprecated)); SSL * SSL_new(SSL_CTX *ctx) __attribute__((deprecated)); int SSL_set_session_id_context(SSL *ssl,const unsigned char *sid_ctx, unsigned int sid_ctx_len) __attribute__((deprecated)); int SSL_CTX_set_purpose(SSL_CTX *s, int purpose) __attribute__((deprecated)); int SSL_set_purpose(SSL *s, int purpose) __attribute__((deprecated)); int SSL_CTX_set_trust(SSL_CTX *s, int trust) __attribute__((deprecated)); int SSL_set_trust(SSL *s, int trust) __attribute__((deprecated)); void SSL_free(SSL *ssl) __attribute__((deprecated)); int SSL_accept(SSL *ssl) __attribute__((deprecated)); int SSL_connect(SSL *ssl) __attribute__((deprecated)); int SSL_read(SSL *ssl,void *buf,int num) __attribute__((deprecated)); int SSL_peek(SSL *ssl,void *buf,int num) __attribute__((deprecated)); int SSL_write(SSL *ssl,const void *buf,int num) __attribute__((deprecated)); long SSL_ctrl(SSL *ssl,int cmd, long larg, void *parg) __attribute__((deprecated)); long SSL_callback_ctrl(SSL *, int, void (*)(void)) __attribute__((deprecated)); long SSL_CTX_ctrl(SSL_CTX *ctx,int cmd, long larg, void *parg) __attribute__((deprecated)); long SSL_CTX_callback_ctrl(SSL_CTX *, int, void (*)(void)) __attribute__((deprecated)); int SSL_get_error(const SSL *s,int ret_code) __attribute__((deprecated)); const char *SSL_get_version(const SSL *s) __attribute__((deprecated)); int SSL_CTX_set_ssl_version(SSL_CTX *ctx,SSL_METHOD *meth) __attribute__((deprecated)); SSL_METHOD *SSLv2_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv2_server_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv2_client_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv3_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv3_server_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv3_client_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv23_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv23_server_method(void) __attribute__((deprecated)); SSL_METHOD *SSLv23_client_method(void) __attribute__((deprecated)); SSL_METHOD *TLSv1_method(void) __attribute__((deprecated)); SSL_METHOD *TLSv1_server_method(void) __attribute__((deprecated)); SSL_METHOD *TLSv1_client_method(void) __attribute__((deprecated)); SSL_METHOD *DTLSv1_method(void) __attribute__((deprecated)); SSL_METHOD *DTLSv1_server_method(void) __attribute__((deprecated)); SSL_METHOD *DTLSv1_client_method(void) __attribute__((deprecated)); STACK *SSL_get_ciphers(const SSL *s) __attribute__((deprecated)); int SSL_do_handshake(SSL *s) __attribute__((deprecated)); int SSL_renegotiate(SSL *s) __attribute__((deprecated)); int SSL_renegotiate_pending(SSL *s) __attribute__((deprecated)); int SSL_shutdown(SSL *s) __attribute__((deprecated)); SSL_METHOD *SSL_get_ssl_method(SSL *s) __attribute__((deprecated)); int SSL_set_ssl_method(SSL *s,SSL_METHOD *method) __attribute__((deprecated)); const char *SSL_alert_type_string_long(int value) __attribute__((deprecated)); const char *SSL_alert_type_string(int value) __attribute__((deprecated)); const char *SSL_alert_desc_string_long(int value) __attribute__((deprecated)); const char *SSL_alert_desc_string(int value) __attribute__((deprecated)); void SSL_set_client_CA_list(SSL *s, STACK *name_list) __attribute__((deprecated)); void SSL_CTX_set_client_CA_list(SSL_CTX *ctx, STACK *name_list) __attribute__((deprecated)); STACK *SSL_get_client_CA_list(const SSL *s) __attribute__((deprecated)); STACK *SSL_CTX_get_client_CA_list(const SSL_CTX *s) __attribute__((deprecated)); int SSL_add_client_CA(SSL *ssl,X509 *x) __attribute__((deprecated)); int SSL_CTX_add_client_CA(SSL_CTX *ctx,X509 *x) __attribute__((deprecated)); void SSL_set_connect_state(SSL *s) __attribute__((deprecated)); void SSL_set_accept_state(SSL *s) __attribute__((deprecated)); long SSL_get_default_timeout(const SSL *s) __attribute__((deprecated)); int SSL_library_init(void ) __attribute__((deprecated)); char *SSL_CIPHER_description(const SSL_CIPHER *,char *buf,int size) __attribute__((deprecated)); STACK *SSL_dup_CA_list(STACK *sk) __attribute__((deprecated)); SSL *SSL_dup(SSL *ssl) __attribute__((deprecated)); X509 *SSL_get_certificate(const SSL *ssl) __attribute__((deprecated)); struct evp_pkey_st *SSL_get_privatekey(SSL *ssl) __attribute__((deprecated)); void SSL_CTX_set_quiet_shutdown(SSL_CTX *ctx,int mode) __attribute__((deprecated)); int SSL_CTX_get_quiet_shutdown(const SSL_CTX *ctx) __attribute__((deprecated)); void SSL_set_quiet_shutdown(SSL *ssl,int mode) __attribute__((deprecated)); int SSL_get_quiet_shutdown(const SSL *ssl) __attribute__((deprecated)); void SSL_set_shutdown(SSL *ssl,int mode) __attribute__((deprecated)); int SSL_get_shutdown(const SSL *ssl) __attribute__((deprecated)); int SSL_version(const SSL *ssl) __attribute__((deprecated)); int SSL_CTX_set_default_verify_paths(SSL_CTX *ctx) __attribute__((deprecated)); int SSL_CTX_load_verify_locations(SSL_CTX *ctx, const char *CAfile, const char *CApath) __attribute__((deprecated)); SSL_SESSION *SSL_get_session(const SSL *ssl) __attribute__((deprecated)); SSL_SESSION *SSL_get1_session(SSL *ssl) __attribute__((deprecated)); SSL_CTX *SSL_get_SSL_CTX(const SSL *ssl) __attribute__((deprecated)); SSL_CTX *SSL_set_SSL_CTX(SSL *ssl, SSL_CTX* ctx) __attribute__((deprecated)); void SSL_set_info_callback(SSL *ssl, void (*cb)(const SSL *ssl,int type,int val)) __attribute__((deprecated)); void (*SSL_get_info_callback(const SSL *ssl))(const SSL *ssl,int type,int val) __attribute__((deprecated)); int SSL_state(const SSL *ssl) __attribute__((deprecated)); void SSL_set_verify_result(SSL *ssl,long v) __attribute__((deprecated)); long SSL_get_verify_result(const SSL *ssl) __attribute__((deprecated)); int SSL_set_ex_data(SSL *ssl,int idx,void *data) __attribute__((deprecated)); void *SSL_get_ex_data(const SSL *ssl,int idx) __attribute__((deprecated)); int SSL_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int SSL_SESSION_set_ex_data(SSL_SESSION *ss,int idx,void *data) __attribute__((deprecated)); void *SSL_SESSION_get_ex_data(const SSL_SESSION *ss,int idx) __attribute__((deprecated)); int SSL_SESSION_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int SSL_CTX_set_ex_data(SSL_CTX *ssl,int idx,void *data) __attribute__((deprecated)); void *SSL_CTX_get_ex_data(const SSL_CTX *ssl,int idx) __attribute__((deprecated)); int SSL_CTX_get_ex_new_index(long argl, void *argp, CRYPTO_EX_new *new_func, CRYPTO_EX_dup *dup_func, CRYPTO_EX_free *free_func) __attribute__((deprecated)); int SSL_get_ex_data_X509_STORE_CTX_idx(void ) __attribute__((deprecated)); # 1645 "/usr/include/openssl/ssl.h" 3 4 void SSL_CTX_set_tmp_rsa_callback(SSL_CTX *ctx, RSA *(*cb)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); void SSL_set_tmp_rsa_callback(SSL *ssl, RSA *(*cb)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); void SSL_CTX_set_tmp_dh_callback(SSL_CTX *ctx, DH *(*dh)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); void SSL_set_tmp_dh_callback(SSL *ssl, DH *(*dh)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); void SSL_CTX_set_tmp_ecdh_callback(SSL_CTX *ctx, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); void SSL_set_tmp_ecdh_callback(SSL *ssl, EC_KEY *(*ecdh)(SSL *ssl,int is_export, int keylength)) __attribute__((deprecated)); const COMP_METHOD *SSL_get_current_compression(SSL *s) __attribute__((deprecated)); const COMP_METHOD *SSL_get_current_expansion(SSL *s) __attribute__((deprecated)); const char *SSL_COMP_get_name(const COMP_METHOD *comp) __attribute__((deprecated)); STACK *SSL_COMP_get_compression_methods(void) __attribute__((deprecated)); int SSL_COMP_add_compression_method(int id,COMP_METHOD *cm) __attribute__((deprecated)); # 1688 "/usr/include/openssl/ssl.h" 3 4 void ERR_load_SSL_strings(void) __attribute__((deprecated)); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['openssl/ssl.h'] in ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.ssl(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.ssl(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.sprng(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.sprng(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default PETSc clone, checking for Sowing Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/local/bin/pdflatex...not found Checking for program /usr/bin/pdflatex...not found Checking for program /bin/pdflatex...not found Checking for program /usr/sbin/pdflatex...not found Checking for program /sbin/pdflatex...not found Checking for program /opt/X11/bin/pdflatex...not found Checking for program /usr/texbin/pdflatex...found Defined make macro "PDFLATEX" to "/usr/texbin/pdflatex" Checking for program /usr/local/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/local/bin/bfort...not found Checking for program /usr/bin/bfort...not found Checking for program /bin/bfort...not found Checking for program /usr/sbin/bfort...not found Checking for program /sbin/bfort...not found Checking for program /opt/X11/bin/bfort...not found Checking for program /usr/texbin/bfort...not found Checking for program /Users/justin/bfort...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/bfort...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/local/bin/doctext...not found Checking for program /usr/bin/doctext...not found Checking for program /bin/doctext...not found Checking for program /usr/sbin/doctext...not found Checking for program /sbin/doctext...not found Checking for program /opt/X11/bin/doctext...not found Checking for program /usr/texbin/doctext...not found Checking for program /Users/justin/doctext...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/doctext...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/local/bin/mapnames...not found Checking for program /usr/bin/mapnames...not found Checking for program /bin/mapnames...not found Checking for program /usr/sbin/mapnames...not found Checking for program /sbin/mapnames...not found Checking for program /opt/X11/bin/mapnames...not found Checking for program /usr/texbin/mapnames...not found Checking for program /Users/justin/mapnames...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/mapnames...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/local/bin/bib2html...not found Checking for program /usr/bin/bib2html...not found Checking for program /bin/bib2html...not found Checking for program /usr/sbin/bib2html...not found Checking for program /sbin/bib2html...not found Checking for program /opt/X11/bin/bib2html...not found Checking for program /usr/texbin/bib2html...not found Checking for program /Users/justin/bib2html...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/bib2html...not found Bfort not found. Installing sowing for FortranStubs Pushing language C ================================================================================ TEST configureLibrary from config.packages.sowing(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:579) TESTING: configureLibrary from config.packages.sowing(config/BuildSystem/config/package.py:579) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional sowing Looking for SOWING in directory starting with sowing Could not locate an existing copy of sowing: [] Downloading sowing =============================================================================== Trying to download https://bitbucket.org/petsc/pkg-sowing.git for SOWING =============================================================================== Executing: ['git', 'clone', 'https://bitbucket.org/petsc/pkg-sowing.git', '/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing'] Executing: ['git', 'checkout', '-f', '82c0163'] Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Looking for SOWING in directory starting with sowing Found a copy of SOWING in sowing Have to rebuild sowing, /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing/sowing.petscconf != /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf/sowing =============================================================================== Running configure on SOWING; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing && ./configure --prefix=/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake stdout: checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/texbin/latex checking for gs... /usr/local/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commands =============================================================================== Running make on SOWING; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing && /usr/bin/make clean stdout: for dir in src docs ; do ( cd $dir && /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ; done for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ; done rm -f *.o *~ /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ; fi ) rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit /bin/rm -f doctext\ win32/debug/* /bin/rm -f *.o *~ /bin/rm -f *.o *~ mapnames ccc rm -f tout.htm tout-bib.htm rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /Applications/Xcode.app/Contents/Developer/usr/bin/make clean) rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf /bin/rm -f lib/libsowing.a lib/libtfilter.a Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing && /usr/bin/make stdout: (cd src/sys && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a (cd src/tohtml && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a (cd src/bfort && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -DBASEDEF='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/bfort-base.txt"' -DBASEPATH='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/bfort-base.txt"' -DBASEPATH='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a (cd src/textfilt && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a (cd src/doctext && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a (cd src/textfilt && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) make[1]: Nothing to be done for `ALL'. (cd src/mapnames && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a =============================================================================== Running make install on SOWING; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing && /usr/bin/make install stdout: /usr/bin/install -c bin/bib2html /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bib2html /usr/bin/install -c src/doctext/doctext /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doctext /usr/bin/install -c src/doctext/doc2lt /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/tohtml if [ "`cd bin && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bfort /usr/bin/install -c src/mapnames/mapnames /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/bfort.1 ;\ fi ********Output of running make on sowing follows ******* checking for ranlib... ranlib checking for a BSD-compatible install... /usr/bin/install -c checking whether install works... yes checking for ar... ar checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for c++... c++ checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for virtual path format... VPATH checking for latex... /usr/texbin/latex checking for gs... /usr/local/bin/gs checking for pnmcrop... no checking for pbmtoxbm... no checking for ppmtogif... no checking for pnmquant... no checking for perl... /usr/bin/perl checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking for stdlib.h... (cached) yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking for string.h... (cached) yes checking for an ANSI C-conforming const... yes checking for C/C++ restrict keyword... __restrict checking for uid_t in sys/types.h... yes checking for size_t... yes checking whether time.h and sys/time.h may both be included... yes checking whether struct tm is in sys/time.h or time.h... time.h checking size of void *... 8 checking size of int... 4 checking size of long... 8 checking size of long long... 8 checking for vprintf... yes checking for _doprnt... no checking for getcwd... yes checking for gethostname... yes checking for getwd... yes checking for mkdir... yes checking that mkdir accepts -p... yes checking for uname... yes checking for gethostbyname... yes checking how to run the C++ preprocessor... c++ -E checking time.h usability... yes checking time.h presence... yes checking for time.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for realpath... yes checking for readlink... yes configure: creating ./config.status config.status: creating Makefile config.status: creating Makerules config.status: creating src/Makefile config.status: creating src/sys/Makefile config.status: creating src/sys/testing/Makefile config.status: creating src/tohtml/Makefile config.status: creating src/tohtml/tohtmlpath.h config.status: creating src/tohtml/testing/Makefile config.status: creating bin/pstoxbm config.status: creating bin/pstogif config.status: creating bin/bib2html config.status: creating src/bfort/Makefile config.status: creating src/bfort/testing/Makefile config.status: creating src/textfilt/Makefile config.status: creating src/doctext/Makefile config.status: creating src/doctext/docpath.h config.status: creating src/doctext/test/Makefile config.status: creating src/mapnames/Makefile config.status: creating src/bib2html/Makefile config.status: creating docs/Makefile config.status: creating docs/doctext/Makefile config.status: creating include/patchlevel.h config.status: creating include/textfilt/textpath.h config.status: creating include/sowingconfig.h config.status: executing bib2html commandsfor dir in src docs ; do ( cd $dir && /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ; done for dir in sys bfort tohtml doctext textfilt mapnames bib2html ; do ( cd $dir ; /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) ; done rm -f *.o *~ /bin/rm -f *.o *~ bfort /bin/rm -f bfort\ win32/debug/* /bin/rm -f *.o *~ tohtml tortf /bin/rm -f tohtml\ win32/debug/* (cd testing && /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ) rm -rf test[1-9] test1[0-9] test2[0-9] rm -f test[1-9].html rm -f latex.err *.hux img*.xbm img*.gif rm -f up.gif previous.gif next.gif rm -f test1[0-9].html test2[0-9].html test7a.html rm -f test[0-9].htm test[1-2][0-9].htm rm -f testf1.ps testf1.gif rm -f inplace subfiles rm -f *.ler *.aux *.out /bin/rm -f *.o *~ doctext doc2lt (cd test ; if [ -s Makefile ] ; then /Applications/Xcode.app/Contents/Developer/usr/bin/make clean ; fi ) rm -f *.o *~ *.3 *.2 *.html *.tex f1.cit /bin/rm -f doctext\ win32/debug/* /bin/rm -f *.o *~ /bin/rm -f *.o *~ mapnames ccc rm -f tout.htm tout-bib.htm rm -f bfort.ps tohtml.ps install.ps doctext.ps \ bfort.pdf tohtml.pdf install.pdf doctext.pdf \ *.aux *.dvi *.toc *.log *.fn *.hux *.err *.blg *.bbl (cd doctext&& /Applications/Xcode.app/Contents/Developer/usr/bin/make clean) rm -f *.fn *.aux *.blg *.toc *.lof *.lot *.dvi *.fns *.bbl *.log \ *.err *.hux doctext.ps doctext.pdf /bin/rm -f lib/libsowing.a lib/libtfilter.a(cd src/sys && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -I../../include -I../../include -c arch.c gcc -I../../include -I../../include -c txt.c gcc -I../../include -I../../include -c daytime.c gcc -I../../include -I../../include -c file.c gcc -I../../include -I../../include -c tr.c gcc -I../../include -I../../include -c getopts.c gcc -I../../include -I../../include -c rdconfig.c ar cr ../../lib/libsowing.a arch.o txt.o daytime.o file.o tr.o getopts.o rdconfig.o ranlib ../../lib/libsowing.a (cd src/tohtml && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -I../../include -I. -I../../include -c tohtml.c gcc -I../../include -I. -I../../include -c tex2html.c gcc -I../../include -I. -I../../include -c search.c gcc -I../../include -I. -I../../include -c texactio.c gcc -I../../include -I. -I../../include -c rdaux.c gcc -I../../include -I. -I../../include -c rdindx.c gcc -I../../include -I. -I../../include -c label.c gcc -I../../include -I. -I../../include -c scan.c gcc -I../../include -I. -I../../include -c refmap.c gcc -I../../include -I. -I../../include -c style.c gcc -I../../include -I. -I../../include -c dimen.c gcc -I../../include -I. -I../../include -c userdef.c gcc -I../../include -I. -I../../include -c tabular.c gcc -I../../include -I. -I../../include -c biblio.c gcc -I../../include -I. -I../../include -c environ.c gcc -I../../include -I. -I../../include -c math.c gcc -I../../include -I. -I../../include -c rddefs.c gcc -I../../include -I. -I../../include -c latexinfo.c gcc -I../../include -I. -I../../include -c accent.c gcc -I../../include -I. -I../../include -c simpleif.c gcc -o tohtml tohtml.o tex2html.o search.o texactio.o rdaux.o rdindx.o label.o scan.o refmap.o style.o dimen.o userdef.o tabular.o biblio.o environ.o math.o rddefs.o latexinfo.o accent.o simpleif.o ../../lib/libsowing.a (cd src/bfort && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) gcc -DBASEDEF='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/bfort-base.txt"' -DBASEPATH='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share"' -I../../include -I../../include -c bfort.c gcc -DBASEDEF='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/bfort-base.txt"' -DBASEPATH='"/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share"' -I../../include -I../../include -c doc.c gcc -o bfort bfort.o doc.o ../../lib/libsowing.a (cd src/textfilt && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c cmdline.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c file.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c instream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c outstream.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c search.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c maptok.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textout.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texthtml.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c textnroff.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c texttex.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c inutil.cc c++ -I../../include/textfilt -I../../include -I../../include -I../../include/textfilt -c errhand.cc ar cr ../../lib/libtfilter.a cmdline.o file.o instream.o outstream.o search.o maptok.o textout.o texthtml.o textnroff.o texttex.o inutil.o errhand.o ranlib ../../lib/libtfilter.a (cd src/doctext && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -I. -I../../include -c doctext.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docutil.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c keyword.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c dotfmat.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c incfiles.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c quotefmt.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c textb.cc c++ -I../../include/textfilt -I../../include -I. -I../../include -c docfields.cc c++ -o doctext doctext.o docutil.o keyword.o dotfmat.o \ incfiles.o quotefmt.o textb.o docfields.o ../../lib/libtfilter.a c++ -I../../include/textfilt -I../../include -I. -I../../include -c doc2lt.cc c++ -o doc2lt doc2lt.o docutil.o docfields.o ../../lib/libtfilter.a (cd src/textfilt && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) make[1]: Nothing to be done for `ALL'. (cd src/mapnames && /Applications/Xcode.app/Contents/Developer/usr/bin/make ) c++ -I../../include/textfilt -I../../include -c mapnames.cc c++ -o mapnames mapnames.o ../../lib/libtfilter.a/usr/bin/install -c bin/bib2html /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bib2html /usr/bin/install -c src/doctext/doctext /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doctext /usr/bin/install -c src/doctext/doc2lt /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doc2lt /usr/bin/install -c src/tohtml/tohtml /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/tohtml if [ "`cd bin && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin && pwd`" ] ; then \ /usr/bin/install -c bin/pstoxbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/pstoxbm ; \ /usr/bin/install -c bin/pstogif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/pstogif ; \ fi /usr/bin/install -c src/bfort/bfort /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bfort /usr/bin/install -c src/mapnames/mapnames /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/mapnames if [ "`cd ./share && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./share/pstoppm.ps /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/pstoppm.ps ;\ /usr/bin/install -c -m 644 ./share/basedefs.txt /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/basedefs.txt ;\ /usr/bin/install -c -m 644 ./share/blueball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/blueball.gif ;\ /usr/bin/install -c -m 644 ./share/greenball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/greenball.gif ;\ /usr/bin/install -c -m 644 ./share/purpleball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/purpleball.gif ;\ /usr/bin/install -c -m 644 ./share/redball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/redball.gif ;\ /usr/bin/install -c -m 644 ./share/yellowball.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/yellowball.gif ;\ /usr/bin/install -c -m 644 ./share/next.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/next.xbm ;\ /usr/bin/install -c -m 644 ./share/up.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/up.xbm ;\ /usr/bin/install -c -m 644 ./share/previous.xbm /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/previous.xbm ;\ /usr/bin/install -c -m 644 ./share/next.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/next.gif ;\ /usr/bin/install -c -m 644 ./share/up.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/up.gif ;\ /usr/bin/install -c -m 644 ./share/previous.gif /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/previous.gif ;\ /usr/bin/install -c -m 644 ./share/html.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/html.def ;\ /usr/bin/install -c -m 644 ./share/latex.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/latex.def ;\ /usr/bin/install -c -m 644 ./share/nroff.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/nroff.def ;\ /usr/bin/install -c -m 644 ./share/refman.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/refman.def ;\ /usr/bin/install -c -m 644 ./share/refman.sty /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/refman.sty ;\ /usr/bin/install -c -m 644 ./share/doctext/html.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/html.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlcolor.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmlcolor.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmltabl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmltabl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/htmlargtbl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/htmlargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latex.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/latex.def ;\ /usr/bin/install -c -m 644 ./share/doctext/latexargtbl.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/latexargtbl.def ;\ /usr/bin/install -c -m 644 ./share/doctext/nroff.def /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/doctext/nroff.def ;\ fi if [ "`cd ./man/man1 && pwd`" != "`cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1 && pwd`" ] ; then \ /usr/bin/install -c -m 644 ./man/man1/tohtml.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/tohtml.1 ;\ /usr/bin/install -c -m 644 ./man/man1/doctext.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/doctext.1 ;\ /usr/bin/install -c -m 644 ./man/man1/bfort.1 /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/share/man/man1/bfort.1 ;\ fi********End of Output of running make on sowing ******* Executing: cp -f /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/sowing/sowing.petscconf /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf/sowing Not checking for library in Download SOWING: [] because no functions given to check for ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names No functions to check for in library [] [] Checking for headers Download SOWING: ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] ================================================================================ TEST checkSharedLibrary from config.packages.sowing(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.sowing(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C Checking for program /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bfort...found Defined make macro "BFORT" to "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bfort" Checking for program /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doctext...found Defined make macro "DOCTEXT" to "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/doctext" Checking for program /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/mapnames...found Defined make macro "MAPNAMES" to "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/mapnames" Checking for program /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bib2html...found Defined make macro "BIB2HTML" to "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bib2html" Running /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/bin/bfort to generate fortran stubs ================================================================================ TEST alternateConfigureLibrary from config.packages.saws(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.saws(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.pthread(/Users/justin/Software/petsc/config/BuildSystem/config/packages/pthread.py:19) TESTING: configureLibrary from config.packages.pthread(config/BuildSystem/config/packages/pthread.py:19) Checks for pthread_barrier_t, cpu_set_t, and sys/sysctl.h ================================================================================== Checking for a functional pthread Checking for library in Compiler specific search PTHREAD: [] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [pthread_create] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_create(); static void _check_pthread_create() { pthread_create(); } int main() { _check_pthread_create();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Popping language C Checking for headers Compiler specific search PTHREAD: ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['pthread.h'] in ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/usr/include/pthread.h" 1 3 4 # 55 "/usr/include/pthread.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 27 "/usr/include/_types.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 32 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 33 "/usr/include/sys/_types.h" 2 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 28 "/usr/include/_types.h" 2 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 56 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/pthread_impl.h" 1 3 4 # 58 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/sched.h" 1 3 4 # 27 "/usr/include/pthread/sched.h" 3 4 # 1 "/usr/include/pthread_impl.h" 1 3 4 # 28 "/usr/include/pthread/sched.h" 2 3 4 struct sched_param { int sched_priority; char __opaque[4]; }; extern int sched_yield(void); extern int sched_get_priority_min(int); extern int sched_get_priority_max(int); # 60 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/time.h" 1 3 4 # 67 "/usr/include/time.h" 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 71 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 72 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 61 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 63 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 64 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 65 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 66 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 67 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 68 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 69 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 70 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 71 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 72 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/pthread/qos.h" 1 3 4 # 28 "/usr/include/pthread/qos.h" 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 29 "/usr/include/pthread/qos.h" 2 3 4 # 1 "/usr/include/sys/qos.h" 1 3 4 # 124 "/usr/include/sys/qos.h" 3 4 enum { QOS_CLASS_USER_INTERACTIVE = 0x21, QOS_CLASS_USER_INITIATED = 0x19, QOS_CLASS_DEFAULT = 0x15, QOS_CLASS_UTILITY = 0x11, QOS_CLASS_BACKGROUND = 0x09, QOS_CLASS_UNSPECIFIED = 0x00, }; typedef unsigned int qos_class_t # 137 "/usr/include/sys/qos.h" 3 4 ; # 153 "/usr/include/sys/qos.h" 3 4 # 164 "/usr/include/sys/qos.h" 3 4 qos_class_t qos_class_self(void); # 186 "/usr/include/sys/qos.h" 3 4 qos_class_t qos_class_main(void); # 33 "/usr/include/pthread/qos.h" 2 3 4 # 76 "/usr/include/pthread/qos.h" 3 4 int pthread_attr_set_qos_class_np(pthread_attr_t *__attr, qos_class_t __qos_class, int __relative_priority); # 107 "/usr/include/pthread/qos.h" 3 4 int pthread_attr_get_qos_class_np(pthread_attr_t * restrict __attr, qos_class_t * restrict __qos_class, int * restrict __relative_priority); # 148 "/usr/include/pthread/qos.h" 3 4 int pthread_set_qos_class_self_np(qos_class_t __qos_class, int __relative_priority); # 179 "/usr/include/pthread/qos.h" 3 4 int pthread_get_qos_class_np(pthread_t __pthread, qos_class_t * restrict __qos_class, int * restrict __relative_priority); # 206 "/usr/include/pthread/qos.h" 3 4 typedef struct pthread_override_s* pthread_override_t; # 258 "/usr/include/pthread/qos.h" 3 4 pthread_override_t pthread_override_qos_class_start_np(pthread_t __pthread, qos_class_t __qos_class, int __relative_priority); # 286 "/usr/include/pthread/qos.h" 3 4 int pthread_override_qos_class_end_np(pthread_override_t __override); # 74 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_types/_mach_port_t.h" 1 3 4 # 49 "/usr/include/sys/_types/_mach_port_t.h" 3 4 typedef __darwin_mach_port_t mach_port_t; # 78 "/usr/include/pthread.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 79 "/usr/include/pthread.h" 2 3 4 # 105 "/usr/include/pthread.h" 3 4 # 209 "/usr/include/pthread.h" 3 4 int pthread_atfork(void (*)(void), void (*)(void), void (*)(void)); int pthread_attr_destroy(pthread_attr_t *); int pthread_attr_getdetachstate(const pthread_attr_t *, int *); int pthread_attr_getguardsize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_getinheritsched(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getschedparam(const pthread_attr_t * restrict, struct sched_param * restrict); int pthread_attr_getschedpolicy(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getscope(const pthread_attr_t * restrict, int * restrict); int pthread_attr_getstack(const pthread_attr_t * restrict, void ** restrict, size_t * restrict); int pthread_attr_getstackaddr(const pthread_attr_t * restrict, void ** restrict); int pthread_attr_getstacksize(const pthread_attr_t * restrict, size_t * restrict); int pthread_attr_init(pthread_attr_t *); int pthread_attr_setdetachstate(pthread_attr_t *, int); int pthread_attr_setguardsize(pthread_attr_t *, size_t); int pthread_attr_setinheritsched(pthread_attr_t *, int); int pthread_attr_setschedparam(pthread_attr_t * restrict, const struct sched_param * restrict); int pthread_attr_setschedpolicy(pthread_attr_t *, int); int pthread_attr_setscope(pthread_attr_t *, int); int pthread_attr_setstack(pthread_attr_t *, void *, size_t); int pthread_attr_setstackaddr(pthread_attr_t *, void *); int pthread_attr_setstacksize(pthread_attr_t *, size_t); int pthread_cancel(pthread_t) __asm("_" "pthread_cancel" ); int pthread_cond_broadcast(pthread_cond_t *); int pthread_cond_destroy(pthread_cond_t *); int pthread_cond_init(pthread_cond_t * restrict, const pthread_condattr_t * restrict) __asm("_" "pthread_cond_init" ); int pthread_cond_signal(pthread_cond_t *); int pthread_cond_timedwait(pthread_cond_t * restrict, pthread_mutex_t * restrict, const struct timespec * restrict) __asm("_" "pthread_cond_timedwait" ); int pthread_cond_wait(pthread_cond_t * restrict, pthread_mutex_t * restrict) __asm("_" "pthread_cond_wait" ); int pthread_condattr_destroy(pthread_condattr_t *); int pthread_condattr_init(pthread_condattr_t *); int pthread_condattr_getpshared(const pthread_condattr_t * restrict, int * restrict); int pthread_condattr_setpshared(pthread_condattr_t *, int); int pthread_create(pthread_t * restrict, const pthread_attr_t * restrict, void *(*)(void *), void * restrict); int pthread_detach(pthread_t); int pthread_equal(pthread_t, pthread_t); void pthread_exit(void *) __attribute__((noreturn)); int pthread_getconcurrency(void); int pthread_getschedparam(pthread_t , int * restrict, struct sched_param * restrict); void* pthread_getspecific(pthread_key_t); int pthread_join(pthread_t , void **) __asm("_" "pthread_join" ); int pthread_key_create(pthread_key_t *, void (*)(void *)); int pthread_key_delete(pthread_key_t); int pthread_mutex_destroy(pthread_mutex_t *); int pthread_mutex_getprioceiling(const pthread_mutex_t * restrict, int * restrict); int pthread_mutex_init(pthread_mutex_t * restrict, const pthread_mutexattr_t * restrict); int pthread_mutex_lock(pthread_mutex_t *); int pthread_mutex_setprioceiling(pthread_mutex_t * restrict, int, int * restrict); int pthread_mutex_trylock(pthread_mutex_t *); int pthread_mutex_unlock(pthread_mutex_t *); int pthread_mutexattr_destroy(pthread_mutexattr_t *) __asm("_" "pthread_mutexattr_destroy" ); int pthread_mutexattr_getprioceiling(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getprotocol(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_getpshared(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_gettype(const pthread_mutexattr_t * restrict, int * restrict); int pthread_mutexattr_init(pthread_mutexattr_t *); int pthread_mutexattr_setprioceiling(pthread_mutexattr_t *, int); int pthread_mutexattr_setprotocol(pthread_mutexattr_t *, int); int pthread_mutexattr_setpshared(pthread_mutexattr_t *, int); int pthread_mutexattr_settype(pthread_mutexattr_t *, int); int pthread_once(pthread_once_t *, void (*)(void)); int pthread_rwlock_destroy(pthread_rwlock_t * ) __asm("_" "pthread_rwlock_destroy" ); int pthread_rwlock_init(pthread_rwlock_t * restrict, const pthread_rwlockattr_t * restrict) __asm("_" "pthread_rwlock_init" ); int pthread_rwlock_rdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_rdlock" ); int pthread_rwlock_tryrdlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_tryrdlock" ); int pthread_rwlock_trywrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_trywrlock" ); int pthread_rwlock_wrlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_wrlock" ); int pthread_rwlock_unlock(pthread_rwlock_t *) __asm("_" "pthread_rwlock_unlock" ); int pthread_rwlockattr_destroy(pthread_rwlockattr_t *); int pthread_rwlockattr_getpshared(const pthread_rwlockattr_t * restrict, int * restrict); int pthread_rwlockattr_init(pthread_rwlockattr_t *); int pthread_rwlockattr_setpshared(pthread_rwlockattr_t *, int); pthread_t pthread_self(void); int pthread_setcancelstate(int , int *) __asm("_" "pthread_setcancelstate" ); int pthread_setcanceltype(int , int *) __asm("_" "pthread_setcanceltype" ); int pthread_setconcurrency(int); int pthread_setschedparam(pthread_t, int, const struct sched_param *); int pthread_setspecific(pthread_key_t , const void *); void pthread_testcancel(void) __asm("_" "pthread_testcancel" ); int pthread_is_threaded_np(void); int pthread_threadid_np(pthread_t,__uint64_t*); int pthread_getname_np(pthread_t,char*,size_t); int pthread_setname_np(const char*); int pthread_main_np(void); mach_port_t pthread_mach_thread_np(pthread_t); size_t pthread_get_stacksize_np(pthread_t); void* pthread_get_stackaddr_np(pthread_t); int pthread_cond_signal_thread_np(pthread_cond_t *, pthread_t); int pthread_cond_timedwait_relative_np(pthread_cond_t *, pthread_mutex_t *, const struct timespec *); int pthread_create_suspended_np(pthread_t *, const pthread_attr_t *, void *(*)(void *), void *); int pthread_kill(pthread_t, int); pthread_t pthread_from_mach_thread_np(mach_port_t); int pthread_sigmask(int, const sigset_t *, sigset_t *) __asm("_" "pthread_sigmask" ); void pthread_yield_np(void); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['pthread.h'] in ['/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Popping language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c:6:1: error: unknown type name 'pthread_barrier_t' pthread_barrier_t *a; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c:6:20: warning: unused variable 'a' [-Wunused-variable] pthread_barrier_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { pthread_barrier_t *a; ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c Possible ERROR while running compiler: exit code 256 stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c: In function 'main': /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c:6:1: error: unknown type name 'cpu_set_t' cpu_set_t *a; ^ /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c:6:12: warning: unused variable 'a' [-Wunused-variable] cpu_set_t *a; ^ Source: #include "confdefs.h" #include "conffix.h" #include int main() { cpu_set_t *a; ; return 0; } Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c" 2 # 1 "/usr/include/sys/sysctl.h" 1 3 4 # 79 "/usr/include/sys/sysctl.h" 3 4 # 1 "/usr/include/sys/cdefs.h" 1 3 4 # 506 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_symbol_aliasing.h" 1 3 4 # 507 "/usr/include/sys/cdefs.h" 2 3 4 # 572 "/usr/include/sys/cdefs.h" 3 4 # 1 "/usr/include/sys/_posix_availability.h" 1 3 4 # 573 "/usr/include/sys/cdefs.h" 2 3 4 # 80 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/appleapiopts.h" 1 3 4 # 82 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/time.h" 1 3 4 # 68 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/_types.h" 1 3 4 # 33 "/usr/include/sys/_types.h" 3 4 # 1 "/usr/include/machine/_types.h" 1 3 4 # 32 "/usr/include/machine/_types.h" 3 4 # 1 "/usr/include/i386/_types.h" 1 3 4 # 37 "/usr/include/i386/_types.h" 3 4 # 37 "/usr/include/i386/_types.h" 3 4 typedef signed char __int8_t; typedef unsigned char __uint8_t; typedef short __int16_t; typedef unsigned short __uint16_t; typedef int __int32_t; typedef unsigned int __uint32_t; typedef long long __int64_t; typedef unsigned long long __uint64_t; typedef long __darwin_intptr_t; typedef unsigned int __darwin_natural_t; # 70 "/usr/include/i386/_types.h" 3 4 typedef int __darwin_ct_rune_t; typedef union { char __mbstate8[128]; long long _mbstateL; } __mbstate_t; typedef __mbstate_t __darwin_mbstate_t; typedef long int __darwin_ptrdiff_t; typedef long unsigned int __darwin_size_t; typedef __builtin_va_list __darwin_va_list; typedef int __darwin_wchar_t; typedef __darwin_wchar_t __darwin_rune_t; typedef int __darwin_wint_t; typedef unsigned long __darwin_clock_t; typedef __uint32_t __darwin_socklen_t; typedef long __darwin_ssize_t; typedef long __darwin_time_t; # 33 "/usr/include/machine/_types.h" 2 3 4 # 34 "/usr/include/sys/_types.h" 2 3 4 # 55 "/usr/include/sys/_types.h" 3 4 typedef __int64_t __darwin_blkcnt_t; typedef __int32_t __darwin_blksize_t; typedef __int32_t __darwin_dev_t; typedef unsigned int __darwin_fsblkcnt_t; typedef unsigned int __darwin_fsfilcnt_t; typedef __uint32_t __darwin_gid_t; typedef __uint32_t __darwin_id_t; typedef __uint64_t __darwin_ino64_t; typedef __darwin_ino64_t __darwin_ino_t; typedef __darwin_natural_t __darwin_mach_port_name_t; typedef __darwin_mach_port_name_t __darwin_mach_port_t; typedef __uint16_t __darwin_mode_t; typedef __int64_t __darwin_off_t; typedef __int32_t __darwin_pid_t; typedef __uint32_t __darwin_sigset_t; typedef __int32_t __darwin_suseconds_t; typedef __uint32_t __darwin_uid_t; typedef __uint32_t __darwin_useconds_t; typedef unsigned char __darwin_uuid_t[16]; typedef char __darwin_uuid_string_t[37]; # 1 "/usr/include/sys/_pthread/_pthread_types.h" 1 3 4 # 57 "/usr/include/sys/_pthread/_pthread_types.h" 3 4 struct __darwin_pthread_handler_rec { void (*__routine)(void *); void *__arg; struct __darwin_pthread_handler_rec *__next; }; struct _opaque_pthread_attr_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_cond_t { long __sig; char __opaque[40]; }; struct _opaque_pthread_condattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_mutex_t { long __sig; char __opaque[56]; }; struct _opaque_pthread_mutexattr_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_once_t { long __sig; char __opaque[8]; }; struct _opaque_pthread_rwlock_t { long __sig; char __opaque[192]; }; struct _opaque_pthread_rwlockattr_t { long __sig; char __opaque[16]; }; struct _opaque_pthread_t { long __sig; struct __darwin_pthread_handler_rec *__cleanup_stack; char __opaque[8176]; }; typedef struct _opaque_pthread_attr_t __darwin_pthread_attr_t; typedef struct _opaque_pthread_cond_t __darwin_pthread_cond_t; typedef struct _opaque_pthread_condattr_t __darwin_pthread_condattr_t; typedef unsigned long __darwin_pthread_key_t; typedef struct _opaque_pthread_mutex_t __darwin_pthread_mutex_t; typedef struct _opaque_pthread_mutexattr_t __darwin_pthread_mutexattr_t; typedef struct _opaque_pthread_once_t __darwin_pthread_once_t; typedef struct _opaque_pthread_rwlock_t __darwin_pthread_rwlock_t; typedef struct _opaque_pthread_rwlockattr_t __darwin_pthread_rwlockattr_t; typedef struct _opaque_pthread_t *__darwin_pthread_t; # 81 "/usr/include/sys/_types.h" 2 3 4 # 69 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/Availability.h" 1 3 4 # 153 "/usr/include/Availability.h" 3 4 # 1 "/usr/include/AvailabilityInternal.h" 1 3 4 # 154 "/usr/include/Availability.h" 2 3 4 # 70 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_def.h" 1 3 4 # 45 "/usr/include/sys/_types/_fd_def.h" 3 4 typedef struct fd_set { __int32_t fds_bits[((((1024) % ((sizeof(__int32_t) * 8))) == 0) ? ((1024) / ((sizeof(__int32_t) * 8))) : (((1024) / ((sizeof(__int32_t) * 8))) + 1))]; } fd_set; static __inline int __darwin_fd_isset(int _n, const struct fd_set *_p) { return (_p->fds_bits[(unsigned long)_n/(sizeof(__int32_t) * 8)] & ((__int32_t)(1<<((unsigned long)_n % (sizeof(__int32_t) * 8))))); } # 76 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timespec.h" 1 3 4 # 30 "/usr/include/sys/_types/_timespec.h" 3 4 struct timespec { __darwin_time_t tv_sec; long tv_nsec; }; # 77 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_timeval.h" 1 3 4 # 30 "/usr/include/sys/_types/_timeval.h" 3 4 struct timeval { __darwin_time_t tv_sec; __darwin_suseconds_t tv_usec; }; # 78 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_time_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_time_t.h" 3 4 typedef __darwin_time_t time_t; # 80 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_suseconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_suseconds_t.h" 3 4 typedef __darwin_suseconds_t suseconds_t; # 81 "/usr/include/sys/time.h" 2 3 4 struct itimerval { struct timeval it_interval; struct timeval it_value; }; # 105 "/usr/include/sys/time.h" 3 4 # 1 "/usr/include/sys/_types/_fd_setsize.h" 1 3 4 # 106 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_set.h" 1 3 4 # 107 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_clr.h" 1 3 4 # 108 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_isset.h" 1 3 4 # 109 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_zero.h" 1 3 4 # 110 "/usr/include/sys/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_fd_copy.h" 1 3 4 # 114 "/usr/include/sys/time.h" 2 3 4 # 124 "/usr/include/sys/time.h" 3 4 struct timezone { int tz_minuteswest; int tz_dsttime; }; # 167 "/usr/include/sys/time.h" 3 4 struct clockinfo { int hz; int tick; int tickadj; int stathz; int profhz; }; # 1 "/usr/include/time.h" 1 3 4 # 66 "/usr/include/time.h" 3 4 # 1 "/usr/include/_types.h" 1 3 4 # 39 "/usr/include/_types.h" 3 4 typedef int __darwin_nl_item; typedef int __darwin_wctrans_t; typedef __uint32_t __darwin_wctype_t; # 67 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_clock_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_clock_t.h" 3 4 typedef __darwin_clock_t clock_t; # 68 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_null.h" 1 3 4 # 69 "/usr/include/time.h" 2 3 4 # 1 "/usr/include/sys/_types/_size_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_size_t.h" 3 4 typedef __darwin_size_t size_t; # 70 "/usr/include/time.h" 2 3 4 struct tm { int tm_sec; int tm_min; int tm_hour; int tm_mday; int tm_mon; int tm_year; int tm_wday; int tm_yday; int tm_isdst; long tm_gmtoff; char *tm_zone; }; # 96 "/usr/include/time.h" 3 4 extern char *tzname[]; extern int getdate_err; extern long timezone __asm("_" "timezone" ); extern int daylight; char *asctime(const struct tm *); clock_t clock(void) __asm("_" "clock" ); char *ctime(const time_t *); double difftime(time_t, time_t); struct tm *getdate(const char *); struct tm *gmtime(const time_t *); struct tm *localtime(const time_t *); time_t mktime(struct tm *) __asm("_" "mktime" ); size_t strftime(char * restrict, size_t, const char * restrict, const struct tm * restrict) __asm("_" "strftime" ); char *strptime(const char * restrict, const char * restrict, struct tm * restrict) __asm("_" "strptime" ); time_t time(time_t *); void tzset(void); char *asctime_r(const struct tm * restrict, char * restrict); char *ctime_r(const time_t *, char *); struct tm *gmtime_r(const time_t * restrict, struct tm * restrict); struct tm *localtime_r(const time_t * restrict, struct tm * restrict); time_t posix2time(time_t); void tzsetwall(void); time_t time2posix(time_t); time_t timelocal(struct tm * const); time_t timegm(struct tm * const); int nanosleep(const struct timespec *, struct timespec *) __asm("_" "nanosleep" ); # 179 "/usr/include/sys/time.h" 2 3 4 int adjtime(const struct timeval *, struct timeval *); int futimes(int, const struct timeval *); int lutimes(const char *, const struct timeval *) ; int settimeofday(const struct timeval *, const struct timezone *); int getitimer(int, struct itimerval *); int gettimeofday(struct timeval * restrict, void * restrict); # 1 "/usr/include/sys/_select.h" 1 3 4 # 39 "/usr/include/sys/_select.h" 3 4 int select(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, struct timeval * restrict) __asm("_" "select" "$1050") ; # 194 "/usr/include/sys/time.h" 2 3 4 int setitimer(int, const struct itimerval * restrict, struct itimerval * restrict); int utimes(const char *, const struct timeval *); # 83 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/ucred.h" 1 3 4 # 75 "/usr/include/sys/ucred.h" 3 4 # 1 "/usr/include/sys/param.h" 1 3 4 # 83 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/types.h" 1 3 4 # 78 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/machine/types.h" 1 3 4 # 35 "/usr/include/machine/types.h" 3 4 # 1 "/usr/include/i386/types.h" 1 3 4 # 76 "/usr/include/i386/types.h" 3 4 # 1 "/usr/include/sys/_types/_int8_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int8_t.h" 3 4 typedef signed char int8_t; # 77 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int16_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int16_t.h" 3 4 typedef short int16_t; # 78 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int32_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int32_t.h" 3 4 typedef int int32_t; # 79 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_int64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_int64_t.h" 3 4 typedef long long int64_t; # 80 "/usr/include/i386/types.h" 2 3 4 typedef unsigned char u_int8_t; typedef unsigned short u_int16_t; typedef unsigned int u_int32_t; typedef unsigned long long u_int64_t; typedef int64_t register_t; # 1 "/usr/include/sys/_types/_intptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_intptr_t.h" 3 4 typedef __darwin_intptr_t intptr_t; # 93 "/usr/include/i386/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_uintptr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uintptr_t.h" 3 4 typedef unsigned long uintptr_t; # 94 "/usr/include/i386/types.h" 2 3 4 typedef u_int64_t user_addr_t; typedef u_int64_t user_size_t; typedef int64_t user_ssize_t; typedef int64_t user_long_t; typedef u_int64_t user_ulong_t; typedef int64_t user_time_t; typedef int64_t user_off_t; typedef u_int64_t syscall_arg_t; # 36 "/usr/include/machine/types.h" 2 3 4 # 79 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/machine/endian.h" 1 3 4 # 35 "/usr/include/machine/endian.h" 3 4 # 1 "/usr/include/i386/endian.h" 1 3 4 # 99 "/usr/include/i386/endian.h" 3 4 # 1 "/usr/include/sys/_endian.h" 1 3 4 # 130 "/usr/include/sys/_endian.h" 3 4 # 1 "/usr/include/libkern/_OSByteOrder.h" 1 3 4 # 66 "/usr/include/libkern/_OSByteOrder.h" 3 4 # 1 "/usr/include/libkern/i386/_OSByteOrder.h" 1 3 4 # 44 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint16_t _OSSwapInt16( __uint16_t _data ) { return ((__uint16_t)((_data << 8) | (_data >> 8))); } static inline __uint32_t _OSSwapInt32( __uint32_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 91 "/usr/include/libkern/i386/_OSByteOrder.h" 3 4 static inline __uint64_t _OSSwapInt64( __uint64_t _data ) { __asm__ ("bswap %0" : "+r" (_data)); return _data; } # 67 "/usr/include/libkern/_OSByteOrder.h" 2 3 4 # 131 "/usr/include/sys/_endian.h" 2 3 4 # 100 "/usr/include/i386/endian.h" 2 3 4 # 36 "/usr/include/machine/endian.h" 2 3 4 # 82 "/usr/include/sys/types.h" 2 3 4 typedef unsigned char u_char; typedef unsigned short u_short; typedef unsigned int u_int; typedef unsigned long u_long; typedef unsigned short ushort; typedef unsigned int uint; typedef u_int64_t u_quad_t; typedef int64_t quad_t; typedef quad_t * qaddr_t; typedef char * caddr_t; typedef int32_t daddr_t; # 1 "/usr/include/sys/_types/_dev_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_dev_t.h" 3 4 typedef __darwin_dev_t dev_t; # 103 "/usr/include/sys/types.h" 2 3 4 typedef u_int32_t fixpt_t; # 1 "/usr/include/sys/_types/_blkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blkcnt_t.h" 3 4 typedef __darwin_blkcnt_t blkcnt_t; # 107 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_blksize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_blksize_t.h" 3 4 typedef __darwin_blksize_t blksize_t; # 108 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_gid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_gid_t.h" 3 4 typedef __darwin_gid_t gid_t; # 109 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_addr_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_addr_t.h" 3 4 typedef __uint32_t in_addr_t; # 110 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_in_port_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_in_port_t.h" 3 4 typedef __uint16_t in_port_t; # 111 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino_t.h" 3 4 typedef __darwin_ino_t ino_t; # 112 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_ino64_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ino64_t.h" 3 4 typedef __darwin_ino64_t ino64_t; # 115 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_key_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_key_t.h" 3 4 typedef __int32_t key_t; # 118 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_mode_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_mode_t.h" 3 4 typedef __darwin_mode_t mode_t; # 119 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_nlink_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_nlink_t.h" 3 4 typedef __uint16_t nlink_t; # 120 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_id_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_id_t.h" 3 4 typedef __darwin_id_t id_t; # 121 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_pid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_pid_t.h" 3 4 typedef __darwin_pid_t pid_t; # 122 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_off_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_off_t.h" 3 4 typedef __darwin_off_t off_t; # 123 "/usr/include/sys/types.h" 2 3 4 typedef int32_t segsz_t; typedef int32_t swblk_t; # 1 "/usr/include/sys/_types/_uid_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_uid_t.h" 3 4 typedef __darwin_uid_t uid_t; # 128 "/usr/include/sys/types.h" 2 3 4 # 163 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_types/_ssize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_ssize_t.h" 3 4 typedef __darwin_ssize_t ssize_t; # 164 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_useconds_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_useconds_t.h" 3 4 typedef __darwin_useconds_t useconds_t; # 167 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_rsize_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_rsize_t.h" 3 4 typedef __darwin_size_t rsize_t; # 171 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_errno_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_errno_t.h" 3 4 typedef int errno_t; # 172 "/usr/include/sys/types.h" 2 3 4 # 185 "/usr/include/sys/types.h" 3 4 typedef __int32_t fd_mask; # 211 "/usr/include/sys/types.h" 3 4 # 1 "/usr/include/sys/_pthread/_pthread_attr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_attr_t.h" 3 4 typedef __darwin_pthread_attr_t pthread_attr_t; # 212 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_cond_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_cond_t.h" 3 4 typedef __darwin_pthread_cond_t pthread_cond_t; # 213 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_condattr_t.h" 3 4 typedef __darwin_pthread_condattr_t pthread_condattr_t; # 214 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutex_t.h" 3 4 typedef __darwin_pthread_mutex_t pthread_mutex_t; # 215 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_mutexattr_t.h" 3 4 typedef __darwin_pthread_mutexattr_t pthread_mutexattr_t; # 216 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_once_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_once_t.h" 3 4 typedef __darwin_pthread_once_t pthread_once_t; # 217 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlock_t.h" 3 4 typedef __darwin_pthread_rwlock_t pthread_rwlock_t; # 218 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_rwlockattr_t.h" 3 4 typedef __darwin_pthread_rwlockattr_t pthread_rwlockattr_t; # 219 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_t.h" 3 4 typedef __darwin_pthread_t pthread_t; # 220 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_pthread/_pthread_key_t.h" 1 3 4 # 30 "/usr/include/sys/_pthread/_pthread_key_t.h" 3 4 typedef __darwin_pthread_key_t pthread_key_t; # 224 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsblkcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsblkcnt_t.h" 3 4 typedef __darwin_fsblkcnt_t fsblkcnt_t; # 229 "/usr/include/sys/types.h" 2 3 4 # 1 "/usr/include/sys/_types/_fsfilcnt_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_fsfilcnt_t.h" 3 4 typedef __darwin_fsfilcnt_t fsfilcnt_t; # 230 "/usr/include/sys/types.h" 2 3 4 # 84 "/usr/include/sys/param.h" 2 3 4 # 93 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/sys/syslimits.h" 1 3 4 # 94 "/usr/include/sys/param.h" 2 3 4 # 107 "/usr/include/sys/param.h" 3 4 # 1 "/usr/include/machine/param.h" 1 3 4 # 35 "/usr/include/machine/param.h" 3 4 # 1 "/usr/include/i386/param.h" 1 3 4 # 75 "/usr/include/i386/param.h" 3 4 # 1 "/usr/include/i386/_param.h" 1 3 4 # 76 "/usr/include/i386/param.h" 2 3 4 # 36 "/usr/include/machine/param.h" 2 3 4 # 108 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 1 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 1 3 4 # 168 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 3 4 # 1 "/usr/include/limits.h" 1 3 4 # 64 "/usr/include/limits.h" 3 4 # 1 "/usr/include/machine/limits.h" 1 3 4 # 1 "/usr/include/i386/limits.h" 1 3 4 # 40 "/usr/include/i386/limits.h" 3 4 # 1 "/usr/include/i386/_limits.h" 1 3 4 # 41 "/usr/include/i386/limits.h" 2 3 4 # 7 "/usr/include/machine/limits.h" 2 3 4 # 65 "/usr/include/limits.h" 2 3 4 # 169 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 8 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/syslimits.h" 2 3 4 # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/limits.h" 2 3 4 # 111 "/usr/include/sys/param.h" 2 3 4 # 1 "/usr/include/sys/signal.h" 1 3 4 # 81 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/signal.h" 1 3 4 # 32 "/usr/include/machine/signal.h" 3 4 # 1 "/usr/include/i386/signal.h" 1 3 4 # 39 "/usr/include/i386/signal.h" 3 4 typedef int sig_atomic_t; # 33 "/usr/include/machine/signal.h" 2 3 4 # 82 "/usr/include/sys/signal.h" 2 3 4 # 145 "/usr/include/sys/signal.h" 3 4 # 1 "/usr/include/machine/_mcontext.h" 1 3 4 # 29 "/usr/include/machine/_mcontext.h" 3 4 # 1 "/usr/include/i386/_mcontext.h" 1 3 4 # 33 "/usr/include/i386/_mcontext.h" 3 4 # 1 "/usr/include/mach/i386/_structs.h" 1 3 4 # 43 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_thread_state { unsigned int __eax; unsigned int __ebx; unsigned int __ecx; unsigned int __edx; unsigned int __edi; unsigned int __esi; unsigned int __ebp; unsigned int __esp; unsigned int __ss; unsigned int __eflags; unsigned int __eip; unsigned int __cs; unsigned int __ds; unsigned int __es; unsigned int __fs; unsigned int __gs; }; # 89 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_control { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, :2, __pc :2, __rc :2, :1, :3; }; typedef struct __darwin_fp_control __darwin_fp_control_t; # 147 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_fp_status { unsigned short __invalid :1, __denorm :1, __zdiv :1, __ovrfl :1, __undfl :1, __precis :1, __stkflt :1, __errsumm :1, __c0 :1, __c1 :1, __c2 :1, __tos :3, __c3 :1, __busy :1; }; typedef struct __darwin_fp_status __darwin_fp_status_t; # 191 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_mmst_reg { char __mmst_reg[10]; char __mmst_rsrv[6]; }; # 210 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_xmm_reg { char __xmm_reg[16]; }; # 232 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_float_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; }; struct __darwin_i386_avx_state { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; char __fpu_rsrv4[14*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; }; # 402 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_i386_exception_state { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint32_t __faultvaddr; }; # 422 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state32 { unsigned int __dr0; unsigned int __dr1; unsigned int __dr2; unsigned int __dr3; unsigned int __dr4; unsigned int __dr5; unsigned int __dr6; unsigned int __dr7; }; # 454 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_thread_state64 { __uint64_t __rax; __uint64_t __rbx; __uint64_t __rcx; __uint64_t __rdx; __uint64_t __rdi; __uint64_t __rsi; __uint64_t __rbp; __uint64_t __rsp; __uint64_t __r8; __uint64_t __r9; __uint64_t __r10; __uint64_t __r11; __uint64_t __r12; __uint64_t __r13; __uint64_t __r14; __uint64_t __r15; __uint64_t __rip; __uint64_t __rflags; __uint64_t __cs; __uint64_t __fs; __uint64_t __gs; }; # 509 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_float_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; }; struct __darwin_x86_avx_state64 { int __fpu_reserved[2]; struct __darwin_fp_control __fpu_fcw; struct __darwin_fp_status __fpu_fsw; __uint8_t __fpu_ftw; __uint8_t __fpu_rsrv1; __uint16_t __fpu_fop; __uint32_t __fpu_ip; __uint16_t __fpu_cs; __uint16_t __fpu_rsrv2; __uint32_t __fpu_dp; __uint16_t __fpu_ds; __uint16_t __fpu_rsrv3; __uint32_t __fpu_mxcsr; __uint32_t __fpu_mxcsrmask; struct __darwin_mmst_reg __fpu_stmm0; struct __darwin_mmst_reg __fpu_stmm1; struct __darwin_mmst_reg __fpu_stmm2; struct __darwin_mmst_reg __fpu_stmm3; struct __darwin_mmst_reg __fpu_stmm4; struct __darwin_mmst_reg __fpu_stmm5; struct __darwin_mmst_reg __fpu_stmm6; struct __darwin_mmst_reg __fpu_stmm7; struct __darwin_xmm_reg __fpu_xmm0; struct __darwin_xmm_reg __fpu_xmm1; struct __darwin_xmm_reg __fpu_xmm2; struct __darwin_xmm_reg __fpu_xmm3; struct __darwin_xmm_reg __fpu_xmm4; struct __darwin_xmm_reg __fpu_xmm5; struct __darwin_xmm_reg __fpu_xmm6; struct __darwin_xmm_reg __fpu_xmm7; struct __darwin_xmm_reg __fpu_xmm8; struct __darwin_xmm_reg __fpu_xmm9; struct __darwin_xmm_reg __fpu_xmm10; struct __darwin_xmm_reg __fpu_xmm11; struct __darwin_xmm_reg __fpu_xmm12; struct __darwin_xmm_reg __fpu_xmm13; struct __darwin_xmm_reg __fpu_xmm14; struct __darwin_xmm_reg __fpu_xmm15; char __fpu_rsrv4[6*16]; int __fpu_reserved1; char __avx_reserved1[64]; struct __darwin_xmm_reg __fpu_ymmh0; struct __darwin_xmm_reg __fpu_ymmh1; struct __darwin_xmm_reg __fpu_ymmh2; struct __darwin_xmm_reg __fpu_ymmh3; struct __darwin_xmm_reg __fpu_ymmh4; struct __darwin_xmm_reg __fpu_ymmh5; struct __darwin_xmm_reg __fpu_ymmh6; struct __darwin_xmm_reg __fpu_ymmh7; struct __darwin_xmm_reg __fpu_ymmh8; struct __darwin_xmm_reg __fpu_ymmh9; struct __darwin_xmm_reg __fpu_ymmh10; struct __darwin_xmm_reg __fpu_ymmh11; struct __darwin_xmm_reg __fpu_ymmh12; struct __darwin_xmm_reg __fpu_ymmh13; struct __darwin_xmm_reg __fpu_ymmh14; struct __darwin_xmm_reg __fpu_ymmh15; }; # 751 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_exception_state64 { __uint16_t __trapno; __uint16_t __cpu; __uint32_t __err; __uint64_t __faultvaddr; }; # 771 "/usr/include/mach/i386/_structs.h" 3 4 struct __darwin_x86_debug_state64 { __uint64_t __dr0; __uint64_t __dr1; __uint64_t __dr2; __uint64_t __dr3; __uint64_t __dr4; __uint64_t __dr5; __uint64_t __dr6; __uint64_t __dr7; }; # 34 "/usr/include/i386/_mcontext.h" 2 3 4 struct __darwin_mcontext32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_float_state __fs; }; struct __darwin_mcontext_avx32 { struct __darwin_i386_exception_state __es; struct __darwin_i386_thread_state __ss; struct __darwin_i386_avx_state __fs; }; # 76 "/usr/include/i386/_mcontext.h" 3 4 struct __darwin_mcontext64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_float_state64 __fs; }; struct __darwin_mcontext_avx64 { struct __darwin_x86_exception_state64 __es; struct __darwin_x86_thread_state64 __ss; struct __darwin_x86_avx_state64 __fs; }; # 115 "/usr/include/i386/_mcontext.h" 3 4 typedef struct __darwin_mcontext64 *mcontext_t; # 30 "/usr/include/machine/_mcontext.h" 2 3 4 # 146 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigaltstack.h" 1 3 4 # 36 "/usr/include/sys/_types/_sigaltstack.h" 3 4 struct __darwin_sigaltstack { void *ss_sp; __darwin_size_t ss_size; int ss_flags; }; typedef struct __darwin_sigaltstack stack_t; # 150 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_ucontext.h" 1 3 4 # 34 "/usr/include/sys/_types/_ucontext.h" 3 4 struct __darwin_ucontext { int uc_onstack; __darwin_sigset_t uc_sigmask; struct __darwin_sigaltstack uc_stack; struct __darwin_ucontext *uc_link; __darwin_size_t uc_mcsize; struct __darwin_mcontext64 *uc_mcontext; }; typedef struct __darwin_ucontext ucontext_t; # 151 "/usr/include/sys/signal.h" 2 3 4 # 1 "/usr/include/sys/_types/_sigset_t.h" 1 3 4 # 30 "/usr/include/sys/_types/_sigset_t.h" 3 4 typedef __darwin_sigset_t sigset_t; # 154 "/usr/include/sys/signal.h" 2 3 4 union sigval { int sival_int; void *sival_ptr; }; struct sigevent { int sigev_notify; int sigev_signo; union sigval sigev_value; void (*sigev_notify_function)(union sigval); pthread_attr_t *sigev_notify_attributes; }; typedef struct __siginfo { int si_signo; int si_errno; int si_code; pid_t si_pid; uid_t si_uid; int si_status; void *si_addr; union sigval si_value; long si_band; unsigned long __pad[7]; } siginfo_t; # 268 "/usr/include/sys/signal.h" 3 4 union __sigaction_u { void (*__sa_handler)(int); void (*__sa_sigaction)(int, struct __siginfo *, void *); }; struct __sigaction { union __sigaction_u __sigaction_u; void (*sa_tramp)(void *, int, int, siginfo_t *, void *); sigset_t sa_mask; int sa_flags; }; struct sigaction { union __sigaction_u __sigaction_u; sigset_t sa_mask; int sa_flags; }; # 330 "/usr/include/sys/signal.h" 3 4 typedef void (*sig_t)(int); # 347 "/usr/include/sys/signal.h" 3 4 struct sigvec { void (*sv_handler)(int); int sv_mask; int sv_flags; }; # 366 "/usr/include/sys/signal.h" 3 4 struct sigstack { char *ss_sp; int ss_onstack; }; # 388 "/usr/include/sys/signal.h" 3 4 void (*signal(int, void (*)(int)))(int); # 114 "/usr/include/sys/param.h" 2 3 4 # 76 "/usr/include/sys/ucred.h" 2 3 4 # 1 "/usr/include/bsm/audit.h" 1 3 4 # 170 "/usr/include/bsm/audit.h" 3 4 typedef uid_t au_id_t; typedef pid_t au_asid_t; typedef u_int16_t au_event_t; typedef u_int16_t au_emod_t; typedef u_int32_t au_class_t; typedef u_int64_t au_asflgs_t __attribute__ ((aligned (8))); struct au_tid { dev_t port; u_int32_t machine; }; typedef struct au_tid au_tid_t; struct au_tid_addr { dev_t at_port; u_int32_t at_type; u_int32_t at_addr[4]; }; typedef struct au_tid_addr au_tid_addr_t; struct au_mask { unsigned int am_success; unsigned int am_failure; }; typedef struct au_mask au_mask_t; struct auditinfo { au_id_t ai_auid; au_mask_t ai_mask; au_tid_t ai_termid; au_asid_t ai_asid; }; typedef struct auditinfo auditinfo_t; struct auditinfo_addr { au_id_t ai_auid; au_mask_t ai_mask; au_tid_addr_t ai_termid; au_asid_t ai_asid; au_asflgs_t ai_flags; }; typedef struct auditinfo_addr auditinfo_addr_t; struct auditpinfo { pid_t ap_pid; au_id_t ap_auid; au_mask_t ap_mask; au_tid_t ap_termid; au_asid_t ap_asid; }; typedef struct auditpinfo auditpinfo_t; struct auditpinfo_addr { pid_t ap_pid; au_id_t ap_auid; au_mask_t ap_mask; au_tid_addr_t ap_termid; au_asid_t ap_asid; au_asflgs_t ap_flags; }; typedef struct auditpinfo_addr auditpinfo_addr_t; struct au_session { auditinfo_addr_t *as_aia_p; au_mask_t as_mask; }; typedef struct au_session au_session_t; typedef struct au_token token_t; # 253 "/usr/include/bsm/audit.h" 3 4 struct au_qctrl { int aq_hiwater; int aq_lowater; int aq_bufsz; int aq_delay; int aq_minfree; }; typedef struct au_qctrl au_qctrl_t; struct audit_stat { unsigned int as_version; unsigned int as_numevent; int as_generated; int as_nonattrib; int as_kernel; int as_audit; int as_auditctl; int as_enqueue; int as_written; int as_wblocked; int as_rblocked; int as_dropped; int as_totalsize; unsigned int as_memused; }; typedef struct audit_stat au_stat_t; struct audit_fstat { u_int64_t af_filesz; u_int64_t af_currsz; }; typedef struct audit_fstat au_fstat_t; struct au_evclass_map { au_event_t ec_number; au_class_t ec_class; }; typedef struct au_evclass_map au_evclass_map_t; int audit(const void *, int); int auditon(int, void *, int); int auditctl(const char *); int getauid(au_id_t *); int setauid(const au_id_t *); int getaudit_addr(struct auditinfo_addr *, int); int setaudit_addr(const struct auditinfo_addr *, int); # 325 "/usr/include/bsm/audit.h" 3 4 int getaudit(struct auditinfo *) __attribute__((deprecated)) ; int setaudit(const struct auditinfo *) __attribute__((deprecated)) ; # 1 "/usr/include/mach/port.h" 1 3 4 # 90 "/usr/include/mach/port.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 1 3 4 # 9 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 3 4 # 1 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 1 3 4 # 32 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/_types/_uint8_t.h" 1 3 4 # 31 "/usr/include/_types/_uint8_t.h" 3 4 typedef unsigned char uint8_t; # 33 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint16_t.h" 1 3 4 # 31 "/usr/include/_types/_uint16_t.h" 3 4 typedef unsigned short uint16_t; # 34 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint32_t.h" 1 3 4 # 31 "/usr/include/_types/_uint32_t.h" 3 4 typedef unsigned int uint32_t; # 35 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uint64_t.h" 1 3 4 # 31 "/usr/include/_types/_uint64_t.h" 3 4 typedef unsigned long long uint64_t; # 36 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 typedef int8_t int_least8_t; typedef int16_t int_least16_t; typedef int32_t int_least32_t; typedef int64_t int_least64_t; typedef uint8_t uint_least8_t; typedef uint16_t uint_least16_t; typedef uint32_t uint_least32_t; typedef uint64_t uint_least64_t; typedef int8_t int_fast8_t; typedef int16_t int_fast16_t; typedef int32_t int_fast32_t; typedef int64_t int_fast64_t; typedef uint8_t uint_fast8_t; typedef uint16_t uint_fast16_t; typedef uint32_t uint_fast32_t; typedef uint64_t uint_fast64_t; # 67 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 3 4 # 1 "/usr/include/_types/_intmax_t.h" 1 3 4 # 32 "/usr/include/_types/_intmax_t.h" 3 4 typedef long int intmax_t; # 68 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 1 "/usr/include/_types/_uintmax_t.h" 1 3 4 # 32 "/usr/include/_types/_uintmax_t.h" 3 4 typedef long unsigned int uintmax_t; # 69 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include-fixed/stdint.h" 2 3 4 # 10 "/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/include/stdint.h" 2 3 4 # 91 "/usr/include/mach/port.h" 2 3 4 # 1 "/usr/include/mach/boolean.h" 1 3 4 # 73 "/usr/include/mach/boolean.h" 3 4 # 1 "/usr/include/mach/machine/boolean.h" 1 3 4 # 33 "/usr/include/mach/machine/boolean.h" 3 4 # 1 "/usr/include/mach/i386/boolean.h" 1 3 4 # 69 "/usr/include/mach/i386/boolean.h" 3 4 typedef unsigned int boolean_t; # 34 "/usr/include/mach/machine/boolean.h" 2 3 4 # 74 "/usr/include/mach/boolean.h" 2 3 4 # 92 "/usr/include/mach/port.h" 2 3 4 # 1 "/usr/include/mach/machine/vm_types.h" 1 3 4 # 33 "/usr/include/mach/machine/vm_types.h" 3 4 # 1 "/usr/include/mach/i386/vm_types.h" 1 3 4 # 73 "/usr/include/mach/i386/vm_types.h" 3 4 # 1 "/usr/include/mach/i386/vm_param.h" 1 3 4 # 74 "/usr/include/mach/i386/vm_types.h" 2 3 4 # 93 "/usr/include/mach/i386/vm_types.h" 3 4 typedef __darwin_natural_t natural_t; typedef int integer_t; typedef uintptr_t vm_offset_t; # 112 "/usr/include/mach/i386/vm_types.h" 3 4 typedef uintptr_t vm_size_t; # 124 "/usr/include/mach/i386/vm_types.h" 3 4 typedef uint64_t mach_vm_address_t; typedef uint64_t mach_vm_offset_t; typedef uint64_t mach_vm_size_t; typedef uint64_t vm_map_offset_t; typedef uint64_t vm_map_address_t; typedef uint64_t vm_map_size_t; typedef mach_vm_address_t mach_port_context_t; # 34 "/usr/include/mach/machine/vm_types.h" 2 3 4 # 93 "/usr/include/mach/port.h" 2 3 4 # 106 "/usr/include/mach/port.h" 3 4 typedef natural_t mach_port_name_t; typedef mach_port_name_t *mach_port_name_array_t; # 127 "/usr/include/mach/port.h" 3 4 # 1 "/usr/include/sys/_types/_mach_port_t.h" 1 3 4 # 49 "/usr/include/sys/_types/_mach_port_t.h" 3 4 typedef __darwin_mach_port_t mach_port_t; # 128 "/usr/include/mach/port.h" 2 3 4 typedef mach_port_t *mach_port_array_t; # 188 "/usr/include/mach/port.h" 3 4 typedef natural_t mach_port_right_t; # 198 "/usr/include/mach/port.h" 3 4 typedef natural_t mach_port_type_t; typedef mach_port_type_t *mach_port_type_array_t; # 233 "/usr/include/mach/port.h" 3 4 typedef natural_t mach_port_urefs_t; typedef integer_t mach_port_delta_t; typedef natural_t mach_port_seqno_t; typedef natural_t mach_port_mscount_t; typedef natural_t mach_port_msgcount_t; typedef natural_t mach_port_rights_t; typedef unsigned int mach_port_srights_t; typedef struct mach_port_status { mach_port_rights_t mps_pset; mach_port_seqno_t mps_seqno; mach_port_mscount_t mps_mscount; mach_port_msgcount_t mps_qlimit; mach_port_msgcount_t mps_msgcount; mach_port_rights_t mps_sorights; boolean_t mps_srights; boolean_t mps_pdrequest; boolean_t mps_nsrequest; natural_t mps_flags; } mach_port_status_t; # 273 "/usr/include/mach/port.h" 3 4 typedef struct mach_port_limits { mach_port_msgcount_t mpl_qlimit; } mach_port_limits_t; # 285 "/usr/include/mach/port.h" 3 4 typedef struct mach_port_info_ext { mach_port_status_t mpie_status; mach_port_msgcount_t mpie_boost_cnt; uint32_t reserved[6]; } mach_port_info_ext_t; typedef integer_t *mach_port_info_t; typedef int mach_port_flavor_t; # 314 "/usr/include/mach/port.h" 3 4 typedef struct mach_port_qos { unsigned int name:1; unsigned int prealloc:1; boolean_t pad1:30; natural_t len; } mach_port_qos_t; # 340 "/usr/include/mach/port.h" 3 4 typedef struct mach_port_options { uint32_t flags; mach_port_limits_t mpl; uint64_t reserved[2]; }mach_port_options_t; typedef mach_port_options_t *mach_port_options_ptr_t; # 356 "/usr/include/mach/port.h" 3 4 enum mach_port_guard_exception_codes { kGUARD_EXC_DESTROY = 1u << 0, kGUARD_EXC_MOD_REFS = 1u << 1, kGUARD_EXC_SET_CONTEXT = 1u << 2, kGUARD_EXC_UNGUARDED = 1u << 3, kGUARD_EXC_INCORRECT_GUARD = 1u << 4 }; # 339 "/usr/include/bsm/audit.h" 2 3 4 mach_port_name_t audit_session_self(void); au_asid_t audit_session_join(mach_port_name_t port); int audit_session_port(au_asid_t asid, mach_port_name_t *portname); # 77 "/usr/include/sys/ucred.h" 2 3 4 struct label; # 1 "/usr/include/sys/queue.h" 1 3 4 # 82 "/usr/include/sys/ucred.h" 2 3 4 struct ucred { struct { struct ucred *tqe_next; struct ucred **tqe_prev; } cr_link; u_long cr_ref; struct posix_cred { uid_t cr_uid; uid_t cr_ruid; uid_t cr_svuid; short cr_ngroups; gid_t cr_groups[16]; gid_t cr_rgid; gid_t cr_svgid; uid_t cr_gmuid; int cr_flags; } cr_posix; struct label *cr_label; struct au_session cr_audit; }; typedef struct ucred *kauth_cred_t; typedef struct posix_cred *posix_cred_t; # 132 "/usr/include/sys/ucred.h" 3 4 struct xucred { u_int cr_version; uid_t cr_uid; short cr_ngroups; gid_t cr_groups[16]; }; # 84 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/proc.h" 1 3 4 # 74 "/usr/include/sys/proc.h" 3 4 # 1 "/usr/include/sys/select.h" 1 3 4 # 111 "/usr/include/sys/select.h" 3 4 int pselect(int, fd_set * restrict, fd_set * restrict, fd_set * restrict, const struct timespec * restrict, const sigset_t * restrict) __asm("_" "pselect" "$1050") ; # 75 "/usr/include/sys/proc.h" 2 3 4 # 1 "/usr/include/sys/lock.h" 1 3 4 # 77 "/usr/include/sys/proc.h" 2 3 4 # 1 "/usr/include/sys/event.h" 1 3 4 # 80 "/usr/include/sys/event.h" 3 4 #pragma pack(4) struct kevent { uintptr_t ident; int16_t filter; uint16_t flags; uint32_t fflags; intptr_t data; void *udata; }; #pragma pack() struct kevent64_s { uint64_t ident; int16_t filter; uint16_t flags; uint32_t fflags; int64_t data; uint64_t udata; uint64_t ext[2]; }; # 225 "/usr/include/sys/event.h" 3 4 enum { eNoteReapDeprecated = 0x10000000 }; # 243 "/usr/include/sys/event.h" 3 4 enum { eNoteExitReparentedDeprecated = 0x00080000 }; # 315 "/usr/include/sys/event.h" 3 4 struct knote; struct klist { struct knote *slh_first; } ; struct timespec; int kqueue(void); int kevent(int kq, const struct kevent *changelist, int nchanges, struct kevent *eventlist, int nevents, const struct timespec *timeout); int kevent64(int kq, const struct kevent64_s *changelist, int nchanges, struct kevent64_s *eventlist, int nevents, unsigned int flags, const struct timespec *timeout); # 79 "/usr/include/sys/proc.h" 2 3 4 struct session; struct pgrp; struct proc; struct extern_proc { union { struct { struct proc *__p_forw; struct proc *__p_back; } p_st1; struct timeval __p_starttime; } p_un; struct vmspace *p_vmspace; struct sigacts *p_sigacts; int p_flag; char p_stat; pid_t p_pid; pid_t p_oppid; int p_dupfd; caddr_t user_stack; void *exit_thread; int p_debugger; boolean_t sigwait; u_int p_estcpu; int p_cpticks; fixpt_t p_pctcpu; void *p_wchan; char *p_wmesg; u_int p_swtime; u_int p_slptime; struct itimerval p_realtimer; struct timeval p_rtime; u_quad_t p_uticks; u_quad_t p_sticks; u_quad_t p_iticks; int p_traceflag; struct vnode *p_tracep; int p_siglist; struct vnode *p_textvp; int p_holdcnt; sigset_t p_sigmask; sigset_t p_sigignore; sigset_t p_sigcatch; u_char p_priority; u_char p_usrpri; char p_nice; char p_comm[16 +1]; struct pgrp *p_pgrp; struct user *p_addr; u_short p_xstat; u_short p_acflag; struct rusage *p_ru; }; # 85 "/usr/include/sys/sysctl.h" 2 3 4 # 1 "/usr/include/sys/vm.h" 1 3 4 # 76 "/usr/include/sys/vm.h" 3 4 struct vmspace { int32_t dummy; caddr_t dummy2; int32_t dummy3[5]; caddr_t dummy4[3]; }; # 86 "/usr/include/sys/sysctl.h" 2 3 4 # 133 "/usr/include/sys/sysctl.h" 3 4 struct ctlname { char *ctl_name; int ctl_type; }; # 446 "/usr/include/sys/sysctl.h" 3 4 struct _pcred { char pc_lock[72]; struct ucred *pc_ucred; uid_t p_ruid; uid_t p_svuid; gid_t p_rgid; gid_t p_svgid; int p_refcnt; }; struct _ucred { int32_t cr_ref; uid_t cr_uid; short cr_ngroups; gid_t cr_groups[16]; }; struct kinfo_proc { struct extern_proc kp_proc; struct eproc { struct proc *e_paddr; struct session *e_sess; struct _pcred e_pcred; struct _ucred e_ucred; struct vmspace e_vm; pid_t e_ppid; pid_t e_pgid; short e_jobc; dev_t e_tdev; pid_t e_tpgid; struct session *e_tsess; char e_wmesg[7 +1]; segsz_t e_xsize; short e_xrssize; short e_xccount; short e_xswrss; int32_t e_flag; char e_login[12]; int32_t e_spare[4]; } kp_eproc; }; struct kinfo_lctx { pid_t id; int mc; }; # 540 "/usr/include/sys/sysctl.h" 3 4 struct xsw_usage { u_int64_t xsu_total; u_int64_t xsu_avail; u_int64_t xsu_used; u_int32_t xsu_pagesize; boolean_t xsu_encrypted; }; struct loadavg { fixpt_t ldavg[3]; long fscale; }; extern struct loadavg averunnable; # 772 "/usr/include/sys/sysctl.h" 3 4 int sysctl(int *, u_int, void *, size_t *, void *, size_t); int sysctlbyname(const char *, void *, size_t *, void *, size_t); int sysctlnametomib(const char *, int *, size_t *); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Defined "HAVE_SYS_SYSCTL_H" to "1" ================================================================================ TEST checkSharedLibrary from config.packages.pthread(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.pthread(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.PARTY(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.PARTY(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.papi(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.papi(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.pami(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.pami(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.p4est(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.p4est(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengles(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.opengles(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.PTScotch(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:579) TESTING: configureLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:579) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional PTScotch Looking for PTSCOTCH in directory starting with scotch Could not locate an existing copy of scotch: ['sowing'] Downloading PTScotch =============================================================================== Trying to download http://gforge.inria.fr/frs/download.php/file/34099/scotch_6.0.3.tar.gz for PTSCOTCH =============================================================================== Downloading http://gforge.inria.fr/frs/download.php/file/34099/scotch_6.0.3.tar.gz to /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_scotch_6.0.3.tar.gz Extracting /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_scotch_6.0.3.tar.gz Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages; chmod -R a+r scotch_6.0.3;find scotch_6.0.3 -type d -name "*" -exec chmod a+rx {} \; ** Error calling select() : (4, 'Interrupted system call') Looking for PTSCOTCH in directory starting with scotch Found a copy of PTSCOTCH in scotch_6.0.3 Looking for PTSCOTCH in directory starting with scotch Found a copy of PTSCOTCH in scotch_6.0.3 Creating PTScotch /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/scotch_6.0.3/src/Makefile.inc Checking for program /usr/local/bin/bison...not found Checking for program /usr/local/bin/bison...not found Checking for program /usr/local/bin/bison...not found Checking for program /usr/bin/bison...found Defined make macro "BISON" to "/usr/bin/bison" Checking for program /usr/local/bin/flex...not found Checking for program /usr/local/bin/flex...not found Checking for program /usr/local/bin/flex...not found Checking for program /usr/bin/flex...found Defined make macro "FLEX" to "/usr/bin/flex" Checking for functions [gzwrite] in library ['-lz'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char gzwrite(); static void _check_gzwrite() { gzwrite(); } int main() { _check_gzwrite();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBZ" to "1" Popping language C Adding ['-lz'] to LIBS Checking for functions [pthread_barrierattr_t] in library ['-lpthread'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char pthread_barrierattr_t(); static void _check_pthread_barrierattr_t() { pthread_barrierattr_t(); } int main() { _check_pthread_barrierattr_t();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lpthread -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_pthread_barrierattr_t", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for functions [sin] in library ['-lm'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c ** Error calling select() : (4, 'Interrupted system call') Possible ERROR while running compiler: stderr: /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c:4:6: warning: conflicting types for built-in function 'sin' char sin(); ^ Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char sin(); static void _check_sin() { sin(); } int main() { _check_sin();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBM" to "1" Popping language C Adding ['-lm'] to LIBS Checking for functions [timer_create] in library ['-lrt'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char timer_create(); static void _check_timer_create() { timer_create(); } int main() { _check_timer_create();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lrt -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lrt collect2: error: ld returned 1 exit status Popping language C Executing: uname -s stdout: Darwin Have to rebuild PTScotch, /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/scotch_6.0.3/src/Makefile.inc != /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf/PTScotch =============================================================================== Compiling PTScotch; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/scotch_6.0.3/src && make clean ptesmumps ** Error calling select() : (4, 'Interrupted system call') ** Error calling select() : (4, 'Interrupted system call') ** Error calling select() : (4, 'Interrupted system call') stdout: (cd libscotch ; make clean) rm -f *~ *.o lib*.a parser_yy.c parser_ly.h parser_ll.c *scotch.h *scotchf.h y.output *dummysizes (cd scotch ; make clean) rm -f *~ *.o acpl amk_ccc amk_fft2 amk_grf amk_hy amk_m2 amk_p2 atst gbase gcv *ggath *gmap gmk_hy gmk_m2 gmk_m3 gmk_msh gmk_ub2 gmtst *gord gotst gout *gpart *gscat *gtst mcv mmk_m2 mmk_m3 mord mtst (cd libscotchmetis ; make clean) rm -f *~ *.o lib*.a (cd check ; make clean) rm -f *~ *.o (cd esmumps ; make clean) rm -f *~ common.h *.o lib*.a main_esmumps (cd libscotch ; make VERSION=6 RELEASE=0 PATCHLEVEL=3 ptscotch && make ptinstall) make CC="/usr/local/opt/open-mpi/bin/mpicc" CCD="/usr/local/opt/open-mpi/bin/mpicc" \ scotch.h \ scotchf.h \ libscotch.a \ libscotcherr.a \ libscotcherrexit.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch.c -o arch.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=3 dummysizes.c -o dummysizes -lz -lm ./dummysizes library.h scotch.h ./dummysizes library_f.h scotchf.h /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_build.c -o arch_build.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_cmplt.c -o arch_cmplt.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_cmpltw.c -o arch_cmpltw.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_deco.c -o arch_deco.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_dist.c -o arch_dist.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_hcub.c -o arch_hcub.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_mesh.c -o arch_mesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_tleaf.c -o arch_tleaf.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_torus.c -o arch_torus.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_vcmplt.c -o arch_vcmplt.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c arch_vhcub.c -o arch_vhcub.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph.c -o bgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_bd.c -o bgraph_bipart_bd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_df.c -o bgraph_bipart_df.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_ex.c -o bgraph_bipart_ex.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_fm.c -o bgraph_bipart_fm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_gg.c -o bgraph_bipart_gg.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_gp.c -o bgraph_bipart_gp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_ml.c -o bgraph_bipart_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_st.c -o bgraph_bipart_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_bipart_zr.c -o bgraph_bipart_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_check.c -o bgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c bgraph_store.c -o bgraph_store.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common.c -DSCOTCH_COMMON_RENAME -o common.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_file.c -DSCOTCH_COMMON_RENAME -o common_file.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_file_compress.c -DSCOTCH_COMMON_RENAME -o common_file_compress.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_file_uncompress.c -DSCOTCH_COMMON_RENAME -o common_file_uncompress.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_integer.c -DSCOTCH_COMMON_RENAME -o common_integer.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_memory.c -DSCOTCH_COMMON_RENAME -o common_memory.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_string.c -DSCOTCH_COMMON_RENAME -o common_string.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_stub.c -DSCOTCH_COMMON_RENAME -o common_stub.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c common_thread.c -DSCOTCH_COMMON_RENAME -o common_thread.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c fibo.c -o fibo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c gain.c -o gain.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c geom.c -o geom.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph.c -o graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_base.c -o graph_base.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_band.c -o graph_band.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_check.c -o graph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_coarsen.c -o graph_coarsen.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_induce.c -o graph_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_io.c -o graph_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_io_chac.c -o graph_io_chac.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_io_habo.c -o graph_io_habo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_io_mmkt.c -o graph_io_mmkt.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_io_scot.c -o graph_io_scot.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_list.c -o graph_list.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c graph_match.c -o graph_match.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hall_order_hd.c -o hall_order_hd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hall_order_hf.c -o hall_order_hf.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hall_order_hx.c -o hall_order_hx.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph.c -o hgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_check.c -o hgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_induce.c -o hgraph_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_bl.c -o hgraph_order_bl.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_cp.c -o hgraph_order_cp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_gp.c -o hgraph_order_gp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_hd.c -o hgraph_order_hd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_hf.c -o hgraph_order_hf.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_hx.c -o hgraph_order_hx.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_kp.c -o hgraph_order_kp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_nd.c -o hgraph_order_nd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_si.c -o hgraph_order_si.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hgraph_order_st.c -o hgraph_order_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh.c -o hmesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_check.c -o hmesh_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_hgraph.c -o hmesh_hgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_induce.c -o hmesh_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_mesh.c -o hmesh_mesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_bl.c -o hmesh_order_bl.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_cp.c -o hmesh_order_cp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_gr.c -o hmesh_order_gr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_gp.c -o hmesh_order_gp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_hd.c -o hmesh_order_hd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_hf.c -o hmesh_order_hf.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_hx.c -o hmesh_order_hx.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_nd.c -o hmesh_order_nd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_si.c -o hmesh_order_si.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c hmesh_order_st.c -o hmesh_order_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph.c -o kgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_band.c -o kgraph_band.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_check.c -o kgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_bd.c -o kgraph_map_bd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_cp.c -o kgraph_map_cp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_df.c -o kgraph_map_df.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_ex.c -o kgraph_map_ex.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_fm.c -o kgraph_map_fm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_ml.c -o kgraph_map_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_rb.c -o kgraph_map_rb.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_rb_map.c -o kgraph_map_rb_map.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_rb_part.c -o kgraph_map_rb_part.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_map_st.c -o kgraph_map_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c kgraph_store.c -o kgraph_store.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_arch.c -o library_arch.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_arch_f.c -o library_arch_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_arch_build.c -o library_arch_build.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_arch_build_f.c -o library_arch_build_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_common_f.c -o library_common_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_geom.c -o library_geom.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_geom_f.c -o library_geom_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph.c -o library_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_f.c -o library_graph_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_base.c -o library_graph_base.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_base_f.c -o library_graph_base_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_check.c -o library_graph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_check_f.c -o library_graph_check_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_coarsen.c -o library_graph_coarsen.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_coarsen_f.c -o library_graph_coarsen_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_color.c -o library_graph_color.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_color_f.c -o library_graph_color_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_chac.c -o library_graph_io_chac.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_chac_f.c -o library_graph_io_chac_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_habo.c -o library_graph_io_habo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_habo_f.c -o library_graph_io_habo_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_mmkt.c -o library_graph_io_mmkt.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_mmkt_f.c -o library_graph_io_mmkt_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_scot.c -o library_graph_io_scot.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_io_scot_f.c -o library_graph_io_scot_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map.c -o library_graph_map.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map_f.c -o library_graph_map_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map_io.c -o library_graph_map_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map_io_f.c -o library_graph_map_io_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map_view.c -o library_graph_map_view.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_map_view_f.c -o library_graph_map_view_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_order.c -o library_graph_order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_order_f.c -o library_graph_order_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_part_ovl.c -o library_graph_part_ovl.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_graph_part_ovl_f.c -o library_graph_part_ovl_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mapping.c -o library_mapping.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_memory.c -o library_memory.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_memory_f.c -o library_memory_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh.c -o library_mesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_f.c -o library_mesh_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_graph.c -o library_mesh_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_graph_f.c -o library_mesh_graph_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_io_habo.c -o library_mesh_io_habo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_io_habo_f.c -o library_mesh_io_habo_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_io_scot.c -o library_mesh_io_scot.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_io_scot_f.c -o library_mesh_io_scot_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_order.c -o library_mesh_order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_mesh_order_f.c -o library_mesh_order_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_order.c -o library_order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_parser.c -o library_parser.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_parser_f.c -o library_parser_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_random.c -o library_random.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_random_f.c -o library_random_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_strat.c -o library_strat.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_version.c -o library_version.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_version_f.c -o library_version_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mapping.c -o mapping.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mapping_io.c -o mapping_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh.c -o mesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_check.c -o mesh_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_coarsen.c -o mesh_coarsen.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_graph.c -o mesh_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_induce_sepa.c -o mesh_induce_sepa.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_io.c -o mesh_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_io_habo.c -o mesh_io_habo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c mesh_io_scot.c -o mesh_io_scot.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c order.c -o order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c order_check.c -o order_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c order_io.c -o order_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c parser.c -o parser.o (/usr/bin/bison -y -d -v parser_yy.y && \ /bin/mv y.tab.c parser_yy.c && \ /bin/mv y.tab.h parser_ly.h) || \ /bin/cp last_resort/parser_ly.h last_resort/parser_yy.c . /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c parser_yy.c -o parser_yy.o (/usr/bin/flex parser_ll.l && \ /bin/mv lex.yy.c parser_ll.c) || \ /bin/cp last_resort/parser_ll.c . /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c parser_ll.c -o parser_ll.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph.c -o vgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_check.c -o vgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_bd.c -o vgraph_separate_bd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_df.c -o vgraph_separate_df.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_es.c -o vgraph_separate_es.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_fm.c -o vgraph_separate_fm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_gg.c -o vgraph_separate_gg.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_gp.c -o vgraph_separate_gp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_ml.c -o vgraph_separate_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_st.c -o vgraph_separate_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_th.c -o vgraph_separate_th.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_vw.c -o vgraph_separate_vw.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_separate_zr.c -o vgraph_separate_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vgraph_store.c -o vgraph_store.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh.c -o vmesh.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_check.c -o vmesh_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_fm.c -o vmesh_separate_fm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_gg.c -o vmesh_separate_gg.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_gr.c -o vmesh_separate_gr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_ml.c -o vmesh_separate_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_zr.c -o vmesh_separate_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_separate_st.c -o vmesh_separate_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c vmesh_store.c -o vmesh_store.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph.c -o wgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_check.c -o wgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_fm.c -o wgraph_part_fm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_gg.c -o wgraph_part_gg.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_gp.c -o wgraph_part_gp.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_ml.c -o wgraph_part_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_rb.c -o wgraph_part_rb.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_st.c -o wgraph_part_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_part_zr.c -o wgraph_part_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c wgraph_store.c -o wgraph_store.o /usr/bin/ar cr libscotch.a arch.o arch_build.o arch_cmplt.o arch_cmpltw.o arch_deco.o arch_dist.o arch_hcub.o arch_mesh.o arch_tleaf.o arch_torus.o arch_vcmplt.o arch_vhcub.o bgraph.o bgraph_bipart_bd.o bgraph_bipart_df.o bgraph_bipart_ex.o bgraph_bipart_fm.o bgraph_bipart_gg.o bgraph_bipart_gp.o bgraph_bipart_ml.o bgraph_bipart_st.o bgraph_bipart_zr.o bgraph_check.o bgraph_store.o common.o common_file.o common_file_compress.o common_file_uncompress.o common_integer.o common_memory.o common_string.o common_stub.o common_thread.o fibo.o gain.o geom.o graph.o graph_base.o graph_band.o graph_check.o graph_coarsen.o graph_induce.o graph_io.o graph_io_chac.o graph_io_habo.o graph_io_mmkt.o graph_io_scot.o graph_list.o graph_match.o hall_order_hd.o hall_order_hf.o hall_order_hx.o hgraph.o hgraph_check.o hgraph_induce.o hgraph_order_bl.o hgraph_order_cp.o hgraph_order_gp.o hgraph_order_hd.o hgraph_order_hf.o hgraph_order_hx.o hgraph_order_kp.o hgraph_order_nd.o hgraph_order_si.o hgraph_order_st.o hmesh.o hmesh_check.o hmesh_hgraph.o hmesh_induce.o hmesh_mesh.o hmesh_order_bl.o hmesh_order_cp.o hmesh_order_gr.o hmesh_order_gp.o hmesh_order_hd.o hmesh_order_hf.o hmesh_order_hx.o hmesh_order_nd.o hmesh_order_si.o hmesh_order_st.o kgraph.o kgraph_band.o kgraph_check.o kgraph_map_bd.o kgraph_map_cp.o kgraph_map_df.o kgraph_map_ex.o kgraph_map_fm.o kgraph_map_ml.o kgraph_map_rb.o kgraph_map_rb_map.o kgraph_map_rb_part.o kgraph_map_st.o kgraph_store.o library_arch.o library_arch_f.o library_arch_build.o library_arch_build_f.o library_common_f.o library_geom.o library_geom_f.o library_graph.o library_graph_f.o library_graph_base.o library_graph_base_f.o library_graph_check.o library_graph_check_f.o library_graph_coarsen.o library_graph_coarsen_f.o library_graph_color.o library_graph_color_f.o library_graph_io_chac.o library_graph_io_chac_f.o library_graph_io_habo.o library_graph_io_habo_f.o library_graph_io_mmkt.o library_graph_io_mmkt_f.o library_graph_io_scot.o library_graph_io_scot_f.o library_graph_map.o library_graph_map_f.o library_graph_map_io.o library_graph_map_io_f.o library_graph_map_view.o library_graph_map_view_f.o library_graph_order.o library_graph_order_f.o library_graph_part_ovl.o library_graph_part_ovl_f.o library_mapping.o library_memory.o library_memory_f.o library_mesh.o library_mesh_f.o library_mesh_graph.o library_mesh_graph_f.o library_mesh_io_habo.o library_mesh_io_habo_f.o library_mesh_io_scot.o library_mesh_io_scot_f.o library_mesh_order.o library_mesh_order_f.o library_order.o library_parser.o library_parser_f.o library_random.o library_random_f.o library_strat.o library_version.o library_version_f.o mapping.o mapping_io.o mesh.o mesh_check.o mesh_coarsen.o mesh_graph.o mesh_induce_sepa.o mesh_io.o mesh_io_habo.o mesh_io_scot.o order.o order_check.o order_io.o parser.o parser_ll.o parser_yy.o vgraph.o vgraph_check.o vgraph_separate_bd.o vgraph_separate_df.o vgraph_separate_es.o vgraph_separate_fm.o vgraph_separate_gg.o vgraph_separate_gp.o vgraph_separate_ml.o vgraph_separate_st.o vgraph_separate_th.o vgraph_separate_vw.o vgraph_separate_zr.o vgraph_store.o vmesh.o vmesh_check.o vmesh_separate_fm.o vmesh_separate_gg.o vmesh_separate_gr.o vmesh_separate_ml.o vmesh_separate_zr.o vmesh_separate_st.o vmesh_store.o wgraph.o wgraph_check.o wgraph_part_fm.o wgraph_part_gg.o wgraph_part_gp.o wgraph_part_ml.o wgraph_part_rb.o wgraph_part_st.o wgraph_part_zr.o wgraph_store.o /usr/bin/ranlib -c libscotch.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_error.c -o library_error.o /usr/bin/ar cr libscotcherr.a library_error.o /usr/bin/ranlib -c libscotcherr.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -c library_error_exit.c -o library_error_exit.o /usr/bin/ar cr libscotcherrexit.a library_error_exit.o /usr/bin/ranlib -c libscotcherrexit.a make CFLAGS="-fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH" CC="/usr/local/opt/open-mpi/bin/mpicc" \ ptscotch.h \ ptscotchf.h \ libptscotch.a \ libptscotcherr.a \ libptscotcherrexit.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -DSCOTCH_VERSION=6 -DSCOTCH_RELEASE=0 -DSCOTCH_PATCHLEVEL=3 dummysizes.c -o ptdummysizes -lz -lm ./ptdummysizes library_pt.h ptscotch.h ./ptdummysizes library_pt_f.h ptscotchf.h /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph.c -o bdgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_bd.c -o bdgraph_bipart_bd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_df.c -o bdgraph_bipart_df.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_ex.c -o bdgraph_bipart_ex.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_ml.c -o bdgraph_bipart_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_sq.c -o bdgraph_bipart_sq.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_st.c -o bdgraph_bipart_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_bipart_zr.c -o bdgraph_bipart_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_check.c -o bdgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_gather_all.c -o bdgraph_gather_all.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c bdgraph_store.c -o bdgraph_store.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c comm.c -o comm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph.c -o dgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_allreduce.c -o dgraph_allreduce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_band.c -o dgraph_band.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_build.c -o dgraph_build.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_build_grid3d.c -o dgraph_build_grid3d.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_build_hcub.c -o dgraph_build_hcub.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_check.c -o dgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_coarsen.c -o dgraph_coarsen.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_fold.c -o dgraph_fold.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_fold_comm.c -o dgraph_fold_comm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_fold_dup.c -o dgraph_fold_dup.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_gather.c -o dgraph_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_gather_all.c -o dgraph_gather_all.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_ghst.c -o dgraph_ghst.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_halo.c -o dgraph_halo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_induce.c -o dgraph_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_io_load.c -o dgraph_io_load.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_io_save.c -o dgraph_io_save.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_match.c -o dgraph_match.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_match_sync_coll.c -o dgraph_match_sync_coll.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_match_sync_ptop.c -o dgraph_match_sync_ptop.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_match_check.c -o dgraph_match_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_redist.c -o dgraph_redist.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_scatter.c -o dgraph_scatter.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dgraph_view.c -o dgraph_view.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dmapping.c -o dmapping.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dmapping_io.c -o dmapping_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder.c -o dorder.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_gather.c -o dorder_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_io.c -o dorder_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_io_block.c -o dorder_io_block.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_io_tree.c -o dorder_io_tree.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_perm.c -o dorder_perm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c dorder_tree_dist.c -o dorder_tree_dist.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph.c -o hdgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_check.c -o hdgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_fold.c -o hdgraph_fold.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_gather.c -o hdgraph_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_induce.c -o hdgraph_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_order_nd.c -o hdgraph_order_nd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_order_si.c -o hdgraph_order_si.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_order_sq.c -o hdgraph_order_sq.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c hdgraph_order_st.c -o hdgraph_order_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph.c -o kdgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph_gather.c -o kdgraph_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph_map_rb.c -o kdgraph_map_rb.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph_map_rb_map.c -o kdgraph_map_rb_map.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph_map_rb_part.c -o kdgraph_map_rb_part.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c kdgraph_map_st.c -o kdgraph_map_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph.c -o library_dgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_f.c -o library_dgraph_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_band.c -o library_dgraph_band.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_band_f.c -o library_dgraph_band_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_build.c -o library_dgraph_build.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_build_f.c -o library_dgraph_build_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_build_grid3d.c -o library_dgraph_build_grid3d.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_build_grid3d_f.c -o library_dgraph_build_grid3d_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_check.c -o library_dgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_check_f.c -o library_dgraph_check_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_coarsen.c -o library_dgraph_coarsen.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_coarsen_f.c -o library_dgraph_coarsen_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_gather.c -o library_dgraph_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_gather_f.c -o library_dgraph_gather_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_grow.c -o library_dgraph_grow.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_halo.c -o library_dgraph_halo.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_halo_f.c -o library_dgraph_halo_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_induce.c -o library_dgraph_induce.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_induce_f.c -o library_dgraph_induce_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_io_load.c -o library_dgraph_io_load.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_io_load_f.c -o library_dgraph_io_load_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_io_save.c -o library_dgraph_io_save.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_io_save_f.c -o library_dgraph_io_save_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_map.c -o library_dgraph_map.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_map_f.c -o library_dgraph_map_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_map_view.c -o library_dgraph_map_view.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_map_view_f.c -o library_dgraph_map_view_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order.c -o library_dgraph_order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_f.c -o library_dgraph_order_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_gather.c -o library_dgraph_order_gather.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_gather_f.c -o library_dgraph_order_gather_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_io.c -o library_dgraph_order_io.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_io_f.c -o library_dgraph_order_io_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_io_block.c -o library_dgraph_order_io_block.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_io_block_f.c -o library_dgraph_order_io_block_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_perm.c -o library_dgraph_order_perm.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_perm_f.c -o library_dgraph_order_perm_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_tree_dist.c -o library_dgraph_order_tree_dist.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_order_tree_dist_f.c -o library_dgraph_order_tree_dist_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_redist.c -o library_dgraph_redist.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_redist_f.c -o library_dgraph_redist_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_scatter.c -o library_dgraph_scatter.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_scatter_f.c -o library_dgraph_scatter_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_stat.c -o library_dgraph_stat.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dgraph_stat_f.c -o library_dgraph_stat_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dmapping.c -o library_dmapping.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_dorder.c -o library_dorder.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph.c -o vdgraph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_check.c -o vdgraph_check.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_gather_all.c -o vdgraph_gather_all.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_bd.c -o vdgraph_separate_bd.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_df.c -o vdgraph_separate_df.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_ml.c -o vdgraph_separate_ml.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_sq.c -o vdgraph_separate_sq.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_st.c -o vdgraph_separate_st.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_separate_zr.c -o vdgraph_separate_zr.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c vdgraph_store.c -o vdgraph_store.o /usr/bin/ar cr libptscotch.a bdgraph.o bdgraph_bipart_bd.o bdgraph_bipart_df.o bdgraph_bipart_ex.o bdgraph_bipart_ml.o bdgraph_bipart_sq.o bdgraph_bipart_st.o bdgraph_bipart_zr.o bdgraph_check.o bdgraph_gather_all.o bdgraph_store.o comm.o dgraph.o dgraph_allreduce.o dgraph_band.o dgraph_build.o dgraph_build_grid3d.o dgraph_build_hcub.o dgraph_check.o dgraph_coarsen.o dgraph_fold.o dgraph_fold_comm.o dgraph_fold_dup.o dgraph_gather.o dgraph_gather_all.o dgraph_ghst.o dgraph_halo.o dgraph_induce.o dgraph_io_load.o dgraph_io_save.o dgraph_match.o dgraph_match_sync_coll.o dgraph_match_sync_ptop.o dgraph_match_check.o dgraph_redist.o dgraph_scatter.o dgraph_view.o dmapping.o dmapping_io.o dorder.o dorder_gather.o dorder_io.o dorder_io_block.o dorder_io_tree.o dorder_perm.o dorder_tree_dist.o hdgraph.o hdgraph_check.o hdgraph_fold.o hdgraph_gather.o hdgraph_induce.o hdgraph_order_nd.o hdgraph_order_si.o hdgraph_order_sq.o hdgraph_order_st.o kdgraph.o kdgraph_gather.o kdgraph_map_rb.o kdgraph_map_rb_map.o kdgraph_map_rb_part.o kdgraph_map_st.o library_dgraph.o library_dgraph_f.o library_dgraph_band.o library_dgraph_band_f.o library_dgraph_build.o library_dgraph_build_f.o library_dgraph_build_grid3d.o library_dgraph_build_grid3d_f.o library_dgraph_check.o library_dgraph_check_f.o library_dgraph_coarsen.o library_dgraph_coarsen_f.o library_dgraph_gather.o library_dgraph_gather_f.o library_dgraph_grow.o library_dgraph_halo.o library_dgraph_halo_f.o library_dgraph_induce.o library_dgraph_induce_f.o library_dgraph_io_load.o library_dgraph_io_load_f.o library_dgraph_io_save.o library_dgraph_io_save_f.o library_dgraph_map.o library_dgraph_map_f.o library_dgraph_map_view.o library_dgraph_map_view_f.o library_dgraph_order.o library_dgraph_order_f.o library_dgraph_order_gather.o library_dgraph_order_gather_f.o library_dgraph_order_io.o library_dgraph_order_io_f.o library_dgraph_order_io_block.o library_dgraph_order_io_block_f.o library_dgraph_order_perm.o library_dgraph_order_perm_f.o library_dgraph_order_tree_dist.o library_dgraph_order_tree_dist_f.o library_dgraph_redist.o library_dgraph_redist_f.o library_dgraph_scatter.o library_dgraph_scatter_f.o library_dgraph_stat.o library_dgraph_stat_f.o library_dmapping.o library_dorder.o vdgraph.o vdgraph_check.o vdgraph_gather_all.o vdgraph_separate_bd.o vdgraph_separate_df.o vdgraph_separate_ml.o vdgraph_separate_sq.o vdgraph_separate_st.o vdgraph_separate_zr.o vdgraph_store.o /usr/bin/ranlib -c libptscotch.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_error.c -o library_error_pt.o /usr/bin/ar cr libptscotcherr.a library_error_pt.o /usr/bin/ranlib -c libptscotcherr.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -c library_error_exit.c -o library_error_exit_pt.o /usr/bin/ar cr libptscotcherrexit.a library_error_exit_pt.o /usr/bin/ranlib -c libptscotcherrexit.a /bin/cp scotch.h ../../include /bin/cp scotchf.h ../../include /bin/cp libscotch.a libscotcherr*.a ../../lib /bin/cp ptscotch.h ../../include /bin/cp ptscotchf.h ../../include /bin/cp libptscotch.a libptscotcherr*.a ../../lib (cd scotch ; make VERSION=6 RELEASE=0 PATCHLEVEL=3 ptscotch && make ptinstall) make CC="/usr/local/opt/open-mpi/bin/mpicc" SCOTCHLIB=ptscotch \ dggath \ dgmap \ dgord \ dgpart \ dgscat \ dgtst /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dggath.c -o dggath -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dgmap.c -o dgmap -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dgord.c -o dgord -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dgmap.c -DSCOTCH_COMPILE_PART -o dgpart -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dgscat.c -o dgscat -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -I../../include -I../libscotch dgtst.c -o dgtst -L../../lib -lptscotch -lscotch -lptscotcherrexit -lz -lm make CC="/usr/local/opt/open-mpi/bin/mpicc" SCOTCHLIB=ptscotch \ dggath \ dgmap \ dgord \ dgpart \ dgscat \ dgtst make[2]: `dggath' is up to date. make[2]: `dgmap' is up to date. make[2]: `dgord' is up to date. make[2]: `dgpart' is up to date. make[2]: `dgscat' is up to date. make[2]: `dgtst' is up to date. /bin/cp dggath dgmap dgord dgpart dgscat dgtst ../../bin (cd libscotchmetis ; make ptscotch && make ptinstall) make CFLAGS="-fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH" CC="/usr/local/opt/open-mpi/bin/mpicc" SCOTCHLIB=ptscotch \ libptscotchparmetis.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -I../libscotch -c parmetis_dgraph_order.c -o parmetis_dgraph_order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -I../libscotch -c parmetis_dgraph_order_f.c -o parmetis_dgraph_order_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -I../libscotch -c parmetis_dgraph_part.c -o parmetis_dgraph_part.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -I../libscotch -c parmetis_dgraph_part_f.c -o parmetis_dgraph_part_f.o /usr/bin/ar cr libptscotchparmetis.a parmetis_dgraph_order.o parmetis_dgraph_order_f.o parmetis_dgraph_part.o parmetis_dgraph_part_f.o /usr/bin/ranlib -c libptscotchparmetis.a make CFLAGS="-fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH" CC="/usr/local/opt/open-mpi/bin/mpicc" SCOTCHLIB=ptscotch \ libptscotchparmetis.a make[2]: `libptscotchparmetis.a' is up to date. /bin/cp parmetis.h ../../include /bin/cp libptscotchparmetis.a ../../lib (cd esmumps ; make ptscotch && make ptinstall) rm -f *~ common.h *.o lib*.a main_esmumps make CFLAGS="-fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict="" -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH" CC=/usr/local/opt/open-mpi/bin/mpicc SCOTCHLIB=ptscotch ESMUMPSLIB=ptesmumps \ libesmumps.a \ main_esmumps cat module.h ../libscotch/common.h > common.h /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c graph_graph.c -o graph_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c order.c -o order.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c order_scotch_graph.c -o order_scotch_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c dof.c -o dof.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c symbol.c -o symbol.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c symbol_fax_graph.c -o symbol_fax_graph.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c esmumps.c -o esmumps.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c esmumps_f.c -o esmumps_f.o /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include -c esmumps_strats.c -o esmumps_strats.o /usr/bin/ar cr libptesmumps.a graph_graph.o order.o order_scotch_graph.o dof.o symbol.o symbol_fax_graph.o esmumps.o esmumps_f.o esmumps_strats.o /usr/bin/ranlib -c libptesmumps.a /usr/local/opt/open-mpi/bin/mpicc -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include -DCOMMON_FILE_COMPRESS_GZ -DCOMMON_RANDOM_FIXED_SEED -DSCOTCH_RENAME -Drestrict= -DCOMMON_TIMING_OLD -DINTSIZE32 -DSCOTCH_PTSCOTCH -I../../include main_esmumps.c -o main_esmumps -L../../lib -lz -lm -L. -lptesmumps -lptscotch -lscotch -lptscotcherrexit -lm /bin/cp esmumps.h ../../include /bin/cp libptesmumps.a ../../lib =============================================================================== Installing PTScotch; this may take several minutes =============================================================================== Executing: mkdir -p /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include && mkdir -p /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib && cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/scotch_6.0.3 && cp -f lib/*.a /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/. && cp -f include/*.h /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/. ********Output of running make on PTScotch follows ******* ********End of Output of running make on PTScotch ******* Executing: cp -f /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/scotch_6.0.3/src/Makefile.inc /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf/PTScotch Checking for library in Download PTSCOTCH: ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/libptesmumps.a', 'libptscotch.a', 'libptscotcherr.a', 'libscotch.a', 'libscotcherr.a'] Contents: ['bin', 'externalpackages', 'include', 'lib', 'share'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [SCOTCH_archBuild] in library ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/libptesmumps.a', 'libptscotch.a', 'libptscotcherr.a', 'libscotch.a', 'libscotcherr.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char SCOTCH_archBuild(); static void _check_SCOTCH_archBuild() { SCOTCH_archBuild(); } int main() { _check_SCOTCH_archBuild();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib -L/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib -lptesmumps -lptscotch -lptscotcherr -lscotch -lscotcherr -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Defined "HAVE_LIBPTESMUMPS" to "1" Defined "HAVE_LIBPTSCOTCH" to "1" Defined "HAVE_LIBPTSCOTCHERR" to "1" Defined "HAVE_LIBSCOTCH" to "1" Defined "HAVE_LIBSCOTCHERR" to "1" Popping language C Checking for headers Download PTSCOTCH: ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Pushing language C ================================================================================ TEST checkInclude from config.headers(/Users/justin/Software/petsc/config/BuildSystem/config/headers.py:86) TESTING: checkInclude from config.headers(config/BuildSystem/config/headers.py:86) Checks if a particular include file can be found along particular include paths Checking for header files ['ptscotch.h'] in ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Checking include with compiler flags var CPPFLAGS ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib', '/usr/local/opt/open-mpi/include', '/usr/local/Cellar/open-mpi/1.8.6/include'] Executing: /usr/local/opt/open-mpi/bin/mpicc -E -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include -I/usr/local/Cellar/open-mpi/1.8.6/include -I/usr/local/Cellar/open-mpi/1.8.6/lib -I/usr/local/opt/open-mpi/include -I/usr/local/Cellar/open-mpi/1.8.6/include /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c stdout: # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "" # 1 "" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/confdefs.h" 1 # 2 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conffix.h" 1 # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 # 1 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/ptscotch.h" 1 # 69 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/ptscotch.h" # 1 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/scotch.h" 1 # 76 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/scotch.h" typedef int32_t SCOTCH_Idx; typedef int32_t SCOTCH_Num; # 110 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/scotch.h" typedef struct { double dummy[8]; } SCOTCH_Arch; typedef struct { double dummy[2]; } SCOTCH_Geom; typedef struct { double dummy[13]; } SCOTCH_Graph; typedef struct { double dummy[15]; } SCOTCH_Mesh; typedef struct { double dummy[4]; } SCOTCH_Mapping; typedef struct { double dummy[12]; } SCOTCH_Ordering; typedef struct { double dummy[1]; } SCOTCH_Strat; # 146 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/scotch.h" SCOTCH_Arch * SCOTCH_archAlloc (void); int SCOTCH_archInit (SCOTCH_Arch * const); void SCOTCH_archExit (SCOTCH_Arch * const); int SCOTCH_archLoad (SCOTCH_Arch * const, FILE * const); int SCOTCH_archSave (const SCOTCH_Arch * const, FILE * const); int SCOTCH_archBuild (SCOTCH_Arch * const, const SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, const SCOTCH_Strat * const); char * SCOTCH_archName (const SCOTCH_Arch * const); SCOTCH_Num SCOTCH_archSize (const SCOTCH_Arch * const); int SCOTCH_archVar (const SCOTCH_Arch * const); int SCOTCH_archCmplt (SCOTCH_Arch * const, const SCOTCH_Num); int SCOTCH_archCmpltw (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num * const); int SCOTCH_archHcub (SCOTCH_Arch * const, const SCOTCH_Num); int SCOTCH_archMesh2 (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_archMesh3 (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_archTleaf (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num * const, const SCOTCH_Num * const); int SCOTCH_archTorus2 (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_archTorus3 (SCOTCH_Arch * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_archVcmplt (SCOTCH_Arch * const); int SCOTCH_archVhcub (SCOTCH_Arch * const); void SCOTCH_errorProg (const char * const); void SCOTCH_errorPrint (const char * const, ...); void SCOTCH_errorPrintW (const char * const, ...); SCOTCH_Geom * SCOTCH_geomAlloc (void); int SCOTCH_geomInit (SCOTCH_Geom * const); void SCOTCH_geomExit (SCOTCH_Geom * const); void SCOTCH_geomData (const SCOTCH_Geom * const, SCOTCH_Num * const, double ** const); SCOTCH_Graph * SCOTCH_graphAlloc (void); int SCOTCH_graphInit (SCOTCH_Graph * const); void SCOTCH_graphExit (SCOTCH_Graph * const); void SCOTCH_graphFree (SCOTCH_Graph * const); int SCOTCH_graphLoad (SCOTCH_Graph * const, FILE * const, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_graphSave (const SCOTCH_Graph * const, FILE * const); int SCOTCH_graphBuild (SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num, const SCOTCH_Num * const, const SCOTCH_Num * const); int SCOTCH_graphCoarsen (const SCOTCH_Graph * const, SCOTCH_Graph * const, SCOTCH_Num * const, const SCOTCH_Num, const double); int SCOTCH_graphColor (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, const SCOTCH_Num); SCOTCH_Num SCOTCH_graphBase (SCOTCH_Graph * const, const SCOTCH_Num baseval); int SCOTCH_graphCheck (const SCOTCH_Graph * const); void SCOTCH_graphSize (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_graphData (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const); void SCOTCH_graphStat (const SCOTCH_Graph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const); int SCOTCH_graphGeomLoadChac (SCOTCH_Graph * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomLoadHabo (SCOTCH_Graph * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomLoadMmkt (SCOTCH_Graph * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomLoadScot (SCOTCH_Graph * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomSaveChac (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomSaveMmkt (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphGeomSaveScot (const SCOTCH_Graph * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_graphMapInit (const SCOTCH_Graph * const, SCOTCH_Mapping * const, const SCOTCH_Arch * const, SCOTCH_Num * const); void SCOTCH_graphMapExit (const SCOTCH_Graph * const, SCOTCH_Mapping * const); int SCOTCH_graphMapLoad (const SCOTCH_Graph * const, const SCOTCH_Mapping * const, FILE * const); int SCOTCH_graphTabLoad (const SCOTCH_Graph * const, SCOTCH_Num * const, FILE * const); int SCOTCH_graphMapSave (const SCOTCH_Graph * const, const SCOTCH_Mapping * const, FILE * const); int SCOTCH_graphMapView (const SCOTCH_Graph * const, const SCOTCH_Mapping * const, FILE * const); int SCOTCH_graphRemapView (const SCOTCH_Graph * const, const SCOTCH_Mapping * const, const SCOTCH_Mapping * const, const double, SCOTCH_Num *, FILE * const); int SCOTCH_graphRemapViewRaw (const SCOTCH_Graph * const, const SCOTCH_Mapping * const, const SCOTCH_Mapping * const, const double, SCOTCH_Num *, FILE * const); int SCOTCH_graphMapCompute (SCOTCH_Graph * const, SCOTCH_Mapping * const, SCOTCH_Strat * const); int SCOTCH_graphMapFixedCompute (SCOTCH_Graph * const, SCOTCH_Mapping * const, SCOTCH_Strat * const); int SCOTCH_graphRemapCompute (SCOTCH_Graph * const, SCOTCH_Mapping * const, SCOTCH_Mapping * const, const double, const SCOTCH_Num *, SCOTCH_Strat * const); int SCOTCH_graphRemapFixedCompute (SCOTCH_Graph * const, SCOTCH_Mapping * const, SCOTCH_Mapping * const, const double, const SCOTCH_Num *, SCOTCH_Strat * const); int SCOTCH_graphMap (SCOTCH_Graph * const, const SCOTCH_Arch * const, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphMapFixed (SCOTCH_Graph * const, const SCOTCH_Arch * const, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphRemap (SCOTCH_Graph * const, const SCOTCH_Arch * const, SCOTCH_Num *, const double, const SCOTCH_Num *, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphRemapFixed (SCOTCH_Graph * const, const SCOTCH_Arch * const, SCOTCH_Num *, const double, const SCOTCH_Num *, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphPart (SCOTCH_Graph * const, const SCOTCH_Num, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphPartFixed (SCOTCH_Graph * const, const SCOTCH_Num, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphPartOvl (SCOTCH_Graph * const, const SCOTCH_Num, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphRepart (SCOTCH_Graph * const, const SCOTCH_Num, SCOTCH_Num * const, const double, const SCOTCH_Num *, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphRepartFixed (SCOTCH_Graph * const, const SCOTCH_Num, SCOTCH_Num * const, const double, const SCOTCH_Num *, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_graphOrderInit (const SCOTCH_Graph * const, SCOTCH_Ordering * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_graphOrderExit (const SCOTCH_Graph * const, SCOTCH_Ordering * const); int SCOTCH_graphOrderLoad (const SCOTCH_Graph * const, SCOTCH_Ordering * const, FILE * const); int SCOTCH_graphOrderSave (const SCOTCH_Graph * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_graphOrderSaveMap (const SCOTCH_Graph * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_graphOrderSaveTree (const SCOTCH_Graph * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_graphOrderCompute (SCOTCH_Graph * const, SCOTCH_Ordering * const, SCOTCH_Strat * const); int SCOTCH_graphOrderComputeList (SCOTCH_Graph * const, SCOTCH_Ordering * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Strat * const); int SCOTCH_graphOrderFactor (const SCOTCH_Graph * const, const SCOTCH_Ordering * const, SCOTCH_Graph * const); int SCOTCH_graphOrderView (const SCOTCH_Graph * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_graphOrder (SCOTCH_Graph * const, SCOTCH_Strat * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_graphOrderList (SCOTCH_Graph * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Strat * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_graphOrderCheck (const SCOTCH_Graph * const, const SCOTCH_Ordering * const); SCOTCH_Mapping * SCOTCH_mapAlloc (void); void SCOTCH_memFree (void * const); SCOTCH_Idx SCOTCH_memCur (void); SCOTCH_Idx SCOTCH_memMax (void); int SCOTCH_meshInit (SCOTCH_Mesh * const); void SCOTCH_meshExit (SCOTCH_Mesh * const); int SCOTCH_meshLoad (SCOTCH_Mesh * const, FILE * const, const SCOTCH_Num); int SCOTCH_meshSave (const SCOTCH_Mesh * const, FILE * const); int SCOTCH_meshBuild (SCOTCH_Mesh * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num, const SCOTCH_Num * const); int SCOTCH_meshCheck (const SCOTCH_Mesh * const); void SCOTCH_meshSize (const SCOTCH_Mesh * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_meshData (const SCOTCH_Mesh * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num * const); void SCOTCH_meshStat (const SCOTCH_Mesh * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const); int SCOTCH_meshGraph (const SCOTCH_Mesh * const, SCOTCH_Graph * const); int SCOTCH_meshGeomLoadHabo (SCOTCH_Mesh * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_meshGeomLoadScot (SCOTCH_Mesh * const, SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_meshGeomSaveScot (const SCOTCH_Mesh * const, const SCOTCH_Geom * const, FILE * const, FILE * const, const char * const); int SCOTCH_meshOrderInit (const SCOTCH_Mesh * const, SCOTCH_Ordering * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_meshOrderExit (const SCOTCH_Mesh * const, SCOTCH_Ordering * const); int SCOTCH_meshOrderSave (const SCOTCH_Mesh * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_meshOrderSaveMap (const SCOTCH_Mesh * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_meshOrderSaveTree (const SCOTCH_Mesh * const, const SCOTCH_Ordering * const, FILE * const); int SCOTCH_meshOrderCompute (SCOTCH_Mesh * const, SCOTCH_Ordering * const, SCOTCH_Strat * const); int SCOTCH_meshOrderComputeList (SCOTCH_Mesh * const, SCOTCH_Ordering * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Strat * const); int SCOTCH_meshOrder (SCOTCH_Mesh * const, SCOTCH_Strat * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_meshOrderList (SCOTCH_Mesh * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Strat * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_meshOrderCheck (const SCOTCH_Mesh * const, const SCOTCH_Ordering * const); int SCOTCH_numSizeof (void); SCOTCH_Ordering * SCOTCH_orderAlloc (void); void SCOTCH_randomReset (void); void SCOTCH_randomSeed (SCOTCH_Num); SCOTCH_Strat * SCOTCH_stratAlloc (void); int SCOTCH_stratInit (SCOTCH_Strat * const); void SCOTCH_stratExit (SCOTCH_Strat * const); void SCOTCH_stratFree (SCOTCH_Strat * const); int SCOTCH_stratSave (const SCOTCH_Strat * const, FILE * const); int SCOTCH_stratGraphBipart (SCOTCH_Strat * const, const char * const); int SCOTCH_stratGraphMap (SCOTCH_Strat * const, const char * const); int SCOTCH_stratGraphMapBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const double); int SCOTCH_stratGraphClusterBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const double, const double); int SCOTCH_stratGraphPartOvl (SCOTCH_Strat * const, const char * const); int SCOTCH_stratGraphPartOvlBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const double); int SCOTCH_stratGraphOrder (SCOTCH_Strat * const, const char * const); int SCOTCH_stratGraphOrderBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const double); int SCOTCH_stratMeshOrder (SCOTCH_Strat * const, const char * const); int SCOTCH_stratMeshOrderBuild (SCOTCH_Strat * const, const SCOTCH_Num, const double); void SCOTCH_version (int * const, int * const, int * const); # 70 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/ptscotch.h" 2 # 87 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/ptscotch.h" typedef struct { double dummy[30]; } SCOTCH_Dgraph; typedef struct { double dummy[1]; } SCOTCH_DgraphHaloReq; typedef struct { double dummy[12]; } SCOTCH_Dmapping; typedef struct { double dummy[6]; } SCOTCH_Dordering; # 111 "/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include/ptscotch.h" SCOTCH_Dgraph * SCOTCH_dgraphAlloc (void); int SCOTCH_dgraphInit (SCOTCH_Dgraph * const, MPI_Comm); void SCOTCH_dgraphExit (SCOTCH_Dgraph * const); void SCOTCH_dgraphFree (SCOTCH_Dgraph * const); int SCOTCH_dgraphLoad (SCOTCH_Dgraph * const, FILE * const, const SCOTCH_Num, const SCOTCH_Num); int SCOTCH_dgraphSave (SCOTCH_Dgraph * const, FILE * const); int SCOTCH_dgraphCheck (const SCOTCH_Dgraph * const); int SCOTCH_dgraphBand (SCOTCH_Dgraph * const, const SCOTCH_Num, SCOTCH_Num * const, const SCOTCH_Num, SCOTCH_Dgraph * const); int SCOTCH_dgraphBuild (SCOTCH_Dgraph * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, const SCOTCH_Num, const SCOTCH_Num, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_dgraphBuildGrid3D (SCOTCH_Dgraph * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const int); int SCOTCH_dgraphCoarsen (SCOTCH_Dgraph * const, const SCOTCH_Num, const double, const SCOTCH_Num, SCOTCH_Dgraph * const, SCOTCH_Num * const); int SCOTCH_dgraphGather (const SCOTCH_Dgraph * const, SCOTCH_Graph * const); int SCOTCH_dgraphGrow (SCOTCH_Dgraph * const, const SCOTCH_Num, SCOTCH_Num * const, const SCOTCH_Num, SCOTCH_Num * const); int SCOTCH_dgraphInducePart (SCOTCH_Dgraph * const, const SCOTCH_Num * const, const SCOTCH_Num, const SCOTCH_Num, SCOTCH_Dgraph * const); int SCOTCH_dgraphScatter (SCOTCH_Dgraph * const, const SCOTCH_Graph * const); int SCOTCH_dgraphRedist (SCOTCH_Dgraph * const, const SCOTCH_Num * const, const SCOTCH_Num * const, const SCOTCH_Num, const SCOTCH_Num, SCOTCH_Dgraph * const); void SCOTCH_dgraphSize (const SCOTCH_Dgraph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_dgraphData (const SCOTCH_Dgraph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num ** const, SCOTCH_Num ** const, SCOTCH_Num ** const, MPI_Comm * const); int SCOTCH_dgraphStat (const SCOTCH_Dgraph * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, double * const, double * const); int SCOTCH_dgraphGhst (SCOTCH_Dgraph * const); int SCOTCH_dgraphHalo (SCOTCH_Dgraph * const, void * const, const MPI_Datatype); int SCOTCH_dgraphHaloAsync (SCOTCH_Dgraph * const, void * const, const MPI_Datatype, SCOTCH_DgraphHaloReq * const); SCOTCH_DgraphHaloReq * SCOTCH_dgraphHaloReqAlloc (void); int SCOTCH_dgraphHaloWait (SCOTCH_DgraphHaloReq * const); int SCOTCH_dgraphMapInit (const SCOTCH_Dgraph * const, SCOTCH_Dmapping * const, const SCOTCH_Arch * const, SCOTCH_Num * const); void SCOTCH_dgraphMapExit (const SCOTCH_Dgraph * const, SCOTCH_Dmapping * const); int SCOTCH_dgraphMapSave (const SCOTCH_Dgraph * const, const SCOTCH_Dmapping * const, FILE * const); int SCOTCH_dgraphMapView (SCOTCH_Dgraph * const, const SCOTCH_Dmapping * const, FILE * const); int SCOTCH_dgraphMapCompute (SCOTCH_Dgraph * const, SCOTCH_Dmapping * const, SCOTCH_Strat * const); int SCOTCH_dgraphMap (SCOTCH_Dgraph * const, const SCOTCH_Arch * const, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_dgraphPart (SCOTCH_Dgraph * const, const SCOTCH_Num, SCOTCH_Strat * const, SCOTCH_Num * const); int SCOTCH_dgraphCorderInit (const SCOTCH_Dgraph * const, SCOTCH_Ordering * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const, SCOTCH_Num * const); void SCOTCH_dgraphCorderExit (const SCOTCH_Dgraph * const, SCOTCH_Ordering * const); int SCOTCH_dgraphOrderInit (const SCOTCH_Dgraph * const, SCOTCH_Dordering * const); void SCOTCH_dgraphOrderExit (const SCOTCH_Dgraph * const, SCOTCH_Dordering * const); int SCOTCH_dgraphOrderSave (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, FILE * const); int SCOTCH_dgraphOrderSaveBlock (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, FILE * const); int SCOTCH_dgraphOrderSaveMap (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, FILE * const); int SCOTCH_dgraphOrderSaveTree (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, FILE * const); int SCOTCH_dgraphOrderPerm (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, SCOTCH_Num * const); SCOTCH_Num SCOTCH_dgraphOrderCblkDist (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const); int SCOTCH_dgraphOrderTreeDist (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, SCOTCH_Num * const, SCOTCH_Num * const); int SCOTCH_dgraphOrderCompute (SCOTCH_Dgraph * const, SCOTCH_Dordering * const, SCOTCH_Strat * const); int SCOTCH_dgraphOrderComputeList (SCOTCH_Dgraph * const, SCOTCH_Dordering * const, const SCOTCH_Num, const SCOTCH_Num * const, SCOTCH_Strat * const); int SCOTCH_dgraphOrderGather (const SCOTCH_Dgraph * const, const SCOTCH_Dordering * const, SCOTCH_Ordering * const); SCOTCH_Dmapping * SCOTCH_dmapAlloc (void); SCOTCH_Dordering * SCOTCH_dorderAlloc (void); int SCOTCH_stratDgraphMap (SCOTCH_Strat * const, const char * const); int SCOTCH_stratDgraphMapBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const double); int SCOTCH_stratDgraphClusterBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const double, const double); int SCOTCH_stratDgraphOrder (SCOTCH_Strat * const, const char * const); int SCOTCH_stratDgraphOrderBuild (SCOTCH_Strat * const, const SCOTCH_Num, const SCOTCH_Num, const SCOTCH_Num, const double); # 3 "/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers/conftest.c" 2 Preprocess stderr before filtering:: Preprocess stderr after filtering:: Found header files ['ptscotch.h'] in ['/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/include', '/usr/local/Cellar/open-mpi/1.8.6/include', '/usr/local/Cellar/open-mpi/1.8.6/lib'] Popping language C ================================================================================ TEST checkSharedLibrary from config.packages.PTScotch(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.PTScotch(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.Numpy(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.Numpy(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.petsc4py(/Users/justin/Software/petsc/config/BuildSystem/config/packages/petsc4py.py:103) TESTING: alternateConfigureLibrary from config.packages.petsc4py(config/BuildSystem/config/packages/petsc4py.py:103) Defined make rule "petsc4py-build" with dependencies "" and code [] Defined make rule "petsc4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.mpi4py(/Users/justin/Software/petsc/config/BuildSystem/config/packages/mpi4py.py:70) TESTING: alternateConfigureLibrary from config.packages.mpi4py(config/BuildSystem/config/packages/mpi4py.py:70) Defined make rule "mpi4py-build" with dependencies "" and code [] Defined make rule "mpi4py-install" with dependencies "" and code [] ================================================================================ TEST alternateConfigureLibrary from config.packages.mpe(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.mpe(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Matlab(/Users/justin/Software/petsc/config/BuildSystem/config/packages/Matlab.py:35) TESTING: alternateConfigureLibrary from config.packages.Matlab(config/BuildSystem/config/packages/Matlab.py:35) ================================================================================ TEST alternateConfigureLibrary from config.packages.MatlabEngine(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.MatlabEngine(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.Mathematica(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.Mathematica(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/local/bin/lgrind...not found Checking for program /usr/bin/lgrind...not found Checking for program /bin/lgrind...not found Checking for program /usr/sbin/lgrind...not found Checking for program /sbin/lgrind...not found Checking for program /opt/X11/bin/lgrind...not found Checking for program /usr/texbin/lgrind...not found Checking for program /Users/justin/lgrind...not found Checking for program /Users/justin/Software/petsc/bin/win32fe/lgrind...not found ================================================================================ TEST alternateConfigureLibrary from config.packages.openmp(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.openmp(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.hwloc(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:579) TESTING: configureLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:579) Find an installation and check if it can work with PETSc ================================================================================== Checking for a functional hwloc Checking for library in Compiler specific search HWLOC: [] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library [] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: Undefined symbols for architecture x86_64: "_hwloc_topology_init", referenced from: _main in conftest.o ld: symbol(s) not found for architecture x86_64 collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lhwloc -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Compiler specific search HWLOC: ['libhwloc.a', 'libxml2.a'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -lhwloc -lxml2 -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a'] Contents: ['.git', '.gitignore', '.yardopts', 'bin', 'Cellar', 'CODEOFCONDUCT.md', 'CONTRIBUTING.md', 'etc', 'include', 'lib', 'Library', 'LICENSE.txt', 'man', 'McAfee', 'opt', 'README.md', 'share', 'SUPPORTERS.md', 'texlive'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lhwloc collect2: error: ld returned 1 exit status Popping language C Checking for library in Package specific search directory HWLOC: ['/usr/local/lib/libhwloc.a', 'libxml2.a'] Contents: ['.git', '.gitignore', '.yardopts', 'bin', 'Cellar', 'CODEOFCONDUCT.md', 'CONTRIBUTING.md', 'etc', 'include', 'lib', 'Library', 'LICENSE.txt', 'man', 'McAfee', 'opt', 'README.md', 'share', 'SUPPORTERS.md', 'texlive'] ================================================================================ TEST check from config.libraries(/Users/justin/Software/petsc/config/BuildSystem/config/libraries.py:146) TESTING: check from config.libraries(config/BuildSystem/config/libraries.py:146) Checks that the library "libName" contains "funcs", and if it does defines HAVE_LIB"libName" - libDir may be a list of directories - libName may be a list of library names Checking for functions [hwloc_topology_init] in library ['/usr/local/lib/libhwloc.a', 'libxml2.a'] [] Pushing language C Executing: /usr/local/opt/open-mpi/bin/mpicc -c -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.setCompilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.compilers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.closure -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.headers -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.cacheDetails -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.atomics -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.getResidentSetSize -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.functions -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.featureTestMacros -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.utilities.missing -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.types -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.MPI -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries -I/var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.pthread -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.c Successful compile: Source: #include "confdefs.h" #include "conffix.h" /* Override any gcc2 internal prototype to avoid an error. */ char hwloc_topology_init(); static void _check_hwloc_topology_init() { hwloc_topology_init(); } int main() { _check_hwloc_topology_init();; return 0; } Pushing language C Popping language C Executing: /usr/local/opt/open-mpi/bin/mpicc -o /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest -Wl,-multiply_defined,suppress -Wl,-multiply_defined -Wl,suppress -Wl,-commons,use_dylibs -Wl,-search_paths_first -fPIC -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O3 /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.libraries/conftest.o -Wl,-rpath,/usr/local/lib -L/usr/local/lib -lhwloc -lxml2 -lm -lz -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -lmpi -lSystem -lgcc_ext.10.5 -Wl,-rpath,/usr/local/opt/libevent/lib -L/usr/local/opt/libevent/lib -Wl,-rpath,/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -Wl,-rpath,/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5 -ldl Possible ERROR while running linker: exit code 256 stderr: ld: library not found for -lhwloc collect2: error: ld returned 1 exit status Popping language C HWLOC: DirPath not found.. skipping: /usr/local/lib64 HWLOC: SearchDir DirPath not found.. skipping: /opt/local ================================================================================ TEST checkSharedLibrary from config.packages.hwloc(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.hwloc(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C ================================================================================ TEST alternateConfigureLibrary from config.packages.gmp(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.gmp(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.mpfr(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.mpfr(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.opengl(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.opengl(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.glut(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.glut(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.scientificpython(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.scientificpython(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fiat(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.fiat(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default ================================================================================ TEST alternateConfigureLibrary from config.packages.fftw(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:641) TESTING: alternateConfigureLibrary from config.packages.fftw(config/BuildSystem/config/package.py:641) Called if --with-packagename=0; does nothing by default Pushing language C ================================================================================ TEST configureLibrary from config.packages.ctetgen(/Users/justin/Software/petsc/config/BuildSystem/config/packages/ctetgen.py:22) TESTING: configureLibrary from config.packages.ctetgen(config/BuildSystem/config/packages/ctetgen.py:22) Just assume the downloaded library will work Looking for CTETGEN in directory starting with ctetgen Could not locate an existing copy of ctetgen: ['scotch_6.0.3', 'sowing'] Downloading ctetgen =============================================================================== Trying to download https://bitbucket.org/petsc/ctetgen.git for CTETGEN =============================================================================== Executing: ['git', 'clone', 'https://bitbucket.org/petsc/ctetgen.git', '/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/ctetgen'] Executing: ['git', 'checkout', '-f', '6d01158'] Looking for CTETGEN in directory starting with ctetgen Found a copy of CTETGEN in ctetgen Looking for CTETGEN in directory starting with ctetgen Found a copy of CTETGEN in ctetgen ================================================================================ TEST checkSharedLibrary from config.packages.ctetgen(/Users/justin/Software/petsc/config/BuildSystem/config/package.py:637) TESTING: checkSharedLibrary from config.packages.ctetgen(config/BuildSystem/config/package.py:637) By default we don't care about checking if the library is shared Popping language C Pushing language C ================================================================================ TEST configureLibrary from config.packages.hdf5(/Users/justin/Software/petsc/config/BuildSystem/config/packages/hdf5.py:45) TESTING: configureLibrary from config.packages.hdf5(config/BuildSystem/config/packages/hdf5.py:45) ================================================================================== Checking for a functional hdf5 Looking for HDF5 in directory starting with hdf5 Could not locate an existing copy of hdf5: ['ctetgen', 'scotch_6.0.3', 'sowing'] Downloading hdf5 =============================================================================== Trying to download http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz for HDF5 =============================================================================== Downloading http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz to /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_hdf5-1.8.12.tar.gz Extracting /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_hdf5-1.8.12.tar.gz ERROR: file could not be opened successfully Downloaded package hdf5 from: http://www.hdfgroup.org/ftp/HDF5/prev-releases/hdf5-1.8.12/src/hdf5-1.8.12.tar.gz is not a tarball. [or installed python cannot process compressed files] * If you are behind a firewall - please fix your proxy and rerun ./configure For example at LANL you may need to set the environmental variable http_proxy (or HTTP_PROXY?) to http://proxyout.lanl.gov * Alternatively, you can download the above URL manually, to /yourselectedlocation/hdf5-1.8.12.tar.gz and use the configure option: --download-hdf5=/yourselectedlocation/hdf5-1.8.12.tar.gz =============================================================================== Trying to download http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hdf5-1.8.12.tar.gz for HDF5 =============================================================================== Downloading http://ftp.mcs.anl.gov/pub/petsc/externalpackages/hdf5-1.8.12.tar.gz to /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_hdf5-1.8.12.tar.gz Extracting /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/_d_hdf5-1.8.12.tar.gz Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages; chmod -R a+r hdf5-1.8.12;find hdf5-1.8.12 -type d -name "*" -exec chmod a+rx {} \; Looking for HDF5 in directory starting with hdf5 Found a copy of HDF5 in hdf5-1.8.12 Looking for HDF5 in directory starting with hdf5 Found a copy of HDF5 in hdf5-1.8.12 Pushing language C All intermediate test results are stored in /var/folders/bg/3k_v2mx51nl4nssd2p1hd8p80000gn/T/petsc-EdFQiL/config.packages.hdf5 Popping language C Pushing language Cxx Popping language Cxx Pushing language FC Executing: /usr/local/opt/open-mpi/bin/mpif90 -v Popping language FC Have to rebuild hdf5, /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/hdf5-1.8.12/hdf5.petscconf != /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib/petsc/conf/hdf5 =============================================================================== Running configure on HDF5; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/hdf5-1.8.12 && ./configure --prefix=/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake MAKE=/usr/bin/make --libdir=/Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/lib CC="/usr/local/opt/open-mpi/bin/mpicc" CFLAGS="-fPIC -O3" AR="/usr/bin/ar" ARFLAGS="cr" CXX="/usr/local/opt/open-mpi/bin/mpicxx" CXXFLAGS="-O -fPIC" F90="/usr/local/opt/open-mpi/bin/mpif90" F90FLAGS="-fPIC -ffree-line-length-0 -O" F77="/usr/local/opt/open-mpi/bin/mpif90" FFLAGS="-fPIC -ffree-line-length-0 -O" FC="/usr/local/opt/open-mpi/bin/mpif90" FCFLAGS="-fPIC -ffree-line-length-0 -O" --enable-shared --enable-parallel --enable-fortran F9X="/usr/local/opt/open-mpi/bin/mpif90" stdout: checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... bin/install-sh -c -d checking for gawk... no checking for mawk... no checking for nawk... no checking for awk... awk checking whether /usr/bin/make sets $(MAKE)... yes checking whether /usr/bin/make supports nested variables... yes checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i386-apple-darwin14.4.0 checking host system type... i386-apple-darwin14.4.0 checking shell variables initial values... done checking if basename works... yes checking if xargs works... yes checking for cached host... none checking for config i386-apple-darwin14.4.0... no checking for config i386-apple-darwin14.4.0... no checking for config apple-darwin14.4.0... no checking for config apple-darwin14.4.0... no checking for config i386-darwin14.4.0... no checking for config i386-darwin14.4.0... no checking for config i386-apple... no checking for config darwin14.4.0... no checking for config darwin14.4.0... no checking for config apple... found compiler '/usr/local/opt/open-mpi/bin/mpicc' is GNU gcc-5.2.0 No match to get fc_version_info and flags for /usr/local/opt/open-mpi/bin/mpif90 No match to get cxx_version_info for /usr/local/opt/open-mpi/bin/mpicxx checking for config ./config/site-specific/host-pacotaco... no checking for gcc... /usr/local/opt/open-mpi/bin/mpicc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether /usr/local/opt/open-mpi/bin/mpicc accepts -g... yes checking for /usr/local/opt/open-mpi/bin/mpicc option to accept ISO C89... none needed checking for style of include used by /usr/bin/make... GNU checking dependency style of /usr/local/opt/open-mpi/bin/mpicc... gcc3 checking if unsupported combinations of configure options are allowed... no checking if Fortran interface enabled... yes checking if Fortran 2003 interface enabled... yes checking whether we are using the GNU Fortran compiler... yes checking whether /usr/local/opt/open-mpi/bin/mpif90 accepts -g... yes checking for Fortran flag to compile .f90 files... none checking whether we are using the GNU Fortran compiler... (cached) yes checking whether /usr/local/opt/open-mpi/bin/mpif90 accepts -g... (cached) yes checking what /usr/local/opt/open-mpi/bin/mpif90 does with modules... MODULE.mod checking how /usr/local/opt/open-mpi/bin/mpif90 finds modules... -I checking how to get verbose linking output from /usr/local/opt/open-mpi/bin/mpif90... -v checking for Fortran libraries of /usr/local/opt/open-mpi/bin/mpif90... -L/usr/local/opt/libevent/lib -L/usr/local/Cellar/open-mpi/1.8.6/lib -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0 -L/usr/local/Cellar/gcc/5.2.0/lib/gcc/5/gcc/x86_64-apple-darwin14.4.0/5.2.0/../../.. -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lgfortran -lquadmath -lm checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking if Fortran compiler supports intrinsic SIZEOF... yes checking if Fortran default REAL is DOUBLE PRECISION... no checking whether we are using the GNU C++ compiler... yes checking whether /usr/local/opt/open-mpi/bin/mpicxx accepts -g... yes checking dependency style of /usr/local/opt/open-mpi/bin/mpicxx... gcc3 checking how to run the C++ preprocessor... /usr/local/opt/open-mpi/bin/mpicxx -E checking if c++ interface enabled... no checking for perl... perl checking whether /usr/bin/make sets $(MAKE)... (cached) yes checking for tr... /usr/bin/tr checking if srcdir= and time commands work together... yes checking for mpiexec... /usr/local/opt/open-mpi/bin/mpiexec checking for mpiexec... /usr/local/opt/open-mpi/bin/mpiexec shared libraries explicitly enabled by user checking if shared Fortran libraries are supported... no checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by /usr/local/opt/open-mpi/bin/mpicc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... no checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm checking the name lister (/usr/bin/nm) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 196608 checking whether the shell understands some XSI constructs... yes checking whether the shell understands "+="... yes checking how to convert i386-apple-darwin14.4.0 file names to i386-apple-darwin14.4.0 format... func_convert_file_noop checking how to convert i386-apple-darwin14.4.0 file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... dlltool checking how to associate runtime and link libraries... printf %s\n checking for archiver @FILE support... no checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm output from /usr/local/opt/open-mpi/bin/mpicc object... ok checking for sysroot... no checking for mt... no checking if : is a manifest tool... no checking for dsymutil... dsymutil checking for nmedit... nmedit checking for lipo... lipo checking for otool... otool checking for otool64... no checking for -single_module linker flag... yes checking for -exported_symbols_list linker flag... yes checking for -force_load linker flag... yes checking how to run the C preprocessor... /usr/local/opt/open-mpi/bin/mpicc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if /usr/local/opt/open-mpi/bin/mpicc supports -fno-rtti -fno-exceptions... no checking for /usr/local/opt/open-mpi/bin/mpicc option to produce PIC... -fno-common -DPIC checking if /usr/local/opt/open-mpi/bin/mpicc PIC flag -fno-common -DPIC works... yes checking if /usr/local/opt/open-mpi/bin/mpicc static flag -static works... no checking if /usr/local/opt/open-mpi/bin/mpicc supports -c -o file.o... yes checking if /usr/local/opt/open-mpi/bin/mpicc supports -c -o file.o... (cached) yes checking whether the /usr/local/opt/open-mpi/bin/mpicc linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.4.0 dyld checking how to hardcode library paths into programs... immediate checking for dlopen in -ldl... yes checking whether a program can dlopen itself... yes checking whether a statically linked program can dlopen itself... yes checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for /usr/local/opt/open-mpi/bin/mpif90 option to produce PIC... -fno-common checking if /usr/local/opt/open-mpi/bin/mpif90 PIC flag -fno-common works... yes checking if /usr/local/opt/open-mpi/bin/mpif90 static flag -static works... no checking if /usr/local/opt/open-mpi/bin/mpif90 supports -c -o file.o... yes checking if /usr/local/opt/open-mpi/bin/mpif90 supports -c -o file.o... (cached) yes checking whether the /usr/local/opt/open-mpi/bin/mpif90 linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... darwin14.4.0 dyld checking how to hardcode library paths into programs... immediate checking if we should install only statically linked executables... no checking if -Wl,-rpath should be used to link shared libs in nondefault directories... yes checking make... checking how make searches directories... VPATH=DIR1 DIR2 ... checking whether make will build with undefined variables... yes checking for production mode... production checking for ceil in -lm... yes checking for dlopen in -ldl... (cached) yes checking for ANSI C header files... (cached) yes checking whether time.h and sys/time.h may both be included... yes checking for difftime... yes checking for gettimeofday... yes checking for library containing clock_gettime... no checking for clock_gettime... no checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking for sys/stat.h... (cached) yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/types.h... (cached) yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking setjmp.h usability... yes checking setjmp.h presence... yes checking for setjmp.h... yes checking features.h usability... no checking features.h presence... no checking for features.h... no checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking for stdint.h... (cached) yes checking mach/mach_time.h usability... yes checking mach/mach_time.h presence... yes checking for mach/mach_time.h... yes checking io.h usability... no checking io.h presence... no checking for io.h... no checking winsock2.h usability... no checking winsock2.h presence... no checking for winsock2.h... no checking sys/timeb.h usability... yes checking sys/timeb.h presence... yes checking for sys/timeb.h... yes checking if libtool needs -no-undefined flag to build shared libraries... no checking if configure should try to set up large file support... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking if large (64-bit) files are supported on this system.... yes skipping test for lseek64(), fseeko64 , ftello64, ftruncate64() because off64_t is not defined checking for fseeko... yes checking for ftello... yes checking for stat64... yes checking for fstat64... yes checking for off_t... yes checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking whether byte ordering is bigendian... no checking size of char... 1 checking size of short... 2 checking size of int... 4 checking size of unsigned... 4 checking size of long... 8 checking size of long long... 8 checking size of __int64... 0 checking size of float... 4 checking size of double... 8 checking size of long double... 16 checking size of int8_t... 1 checking size of uint8_t... 1 checking size of int_least8_t... 1 checking size of uint_least8_t... 1 checking size of int_fast8_t... 1 checking size of uint_fast8_t... 1 checking size of int16_t... 2 checking size of uint16_t... 2 checking size of int_least16_t... 2 checking size of uint_least16_t... 2 checking size of int_fast16_t... 2 checking size of uint_fast16_t... 2 checking size of int32_t... 4 checking size of uint32_t... 4 checking size of int_least32_t... 4 checking size of uint_least32_t... 4 checking size of int_fast32_t... 4 checking size of uint_fast32_t... 4 checking size of int64_t... 8 checking size of uint64_t... 8 checking size of int_least64_t... 8 checking size of uint_least64_t... 8 checking size of int_fast64_t... 8 checking size of uint_fast64_t... 8 checking size of size_t... 8 checking size of ssize_t... 8 checking size of ptrdiff_t... 8 checking size of off_t... 8 checking size of off64_t... 0 checking if dev_t is scalar... yes checking for dmalloc library... suppressed checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking for compress2 in -lz... yes checking for compress2... yes checking for szlib... suppressed checking for pthread... suppressed checking for thread safe support... no checking whether CLOCK_MONOTONIC is declared... no checking for tm_gmtoff in struct tm... yes checking for __tm_gmtoff in struct tm... no checking for global timezone variable... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for struct tm.tm_zone... yes checking for struct timezone... yes checking whether gettimeofday() gives timezone... yes checking for st_blocks in struct stat... yes checking for _getvideoconfig... no checking for gettextinfo... no checking for GetConsoleScreenBufferInfo... no checking for _scrsize... no checking for ioctl... yes checking for struct videoconfig... no checking for struct text_info... no checking for TIOCGWINSZ... yes checking for TIOCGETD... yes checking for alarm... yes checking for BSDgettimeofday... no checking for fork... yes checking for frexpf... yes checking for frexpl... yes checking for gethostname... yes checking for getpwuid... yes checking for getrusage... yes checking for lstat... yes checking for rand_r... yes checking for random... yes checking for setsysinfo... no checking for signal... yes checking for longjmp... yes checking for setjmp... yes checking for siglongjmp... yes checking for sigsetjmp... yes checking for sigprocmask... yes checking for snprintf... yes checking for srandom... yes checking for strdup... yes checking for symlink... yes checking for system... yes checking for tmpfile... yes checking for vasprintf... yes checking for waitpid... yes checking for vsnprintf... yes checking if vsnprintf returns correct value... yes checking if lone colon can be used as an argument... yes checking for an ANSI C-conforming const... yes checking for inline... __inline__ checking for __attribute__ extension... yes checking for __func__ extension... yes checking for __FUNCTION__ extension... yes checking for C99 designated initialization support... yes checking how to print long long... %ld and %lu checking Threads support system scope... yes checking for gpfs... suppressed checking for debug flags... none checking whether function stack tracking is enabled... no checking whether metadata trace file code is enabled... no checking for API tracing... no checking for instrumented library... no checking whether to clear file buffers... yes checking whether a memory checking tool will be used... no checking for parallel support files... provided by compiler checking prefix for running on one processor... none checking prefix for running in parallel... /usr/local/opt/open-mpi/bin/mpiexec -n $${NPROCS:=6} checking whether a simple MPI-IO program can be linked... yes checking for MPI_Comm_c2f and MPI_Comm_f2c functions... yes checking for MPI_Info_c2f and MPI_Info_f2c functions... yes checking for MPE... suppressed checking if MPI_File_set_size works for files over 2GB... yes checking if MPI_File_get_size is enabled... yes checking for I/O filters... all (shuffle,fletcher32,nbit,scaleoffset) checking for Default Virtual File Driver definition... yes checking for Direct Virtual File Driver support... no checking for custom plugin default path definition... /usr/local/hdf5/lib/plugin checking whether exception handling functions is checked during data conversions... yes checking whether data accuracy is guaranteed during data conversions... yes checking if converting denormalized floating-point values is possible... yes checking if converting floating-point values to long long is not working... false checking if the machine has window style path name... no checking if converting from long double to integers is accurate... yes checking if converting from long double to integers works... yes checking if accurately converting from integers to long double... yes checking if accurately converting unsigned long to float values... yes checking if accurately converting unsigned long long to floating-point values... yes checking if accurately roundup converting floating-point to unsigned long long values... yes checking if right maximum converting floating-point to unsigned long long values... yes checking if correctly converting long double to unsigned int values... yes checking if compiling unsigned long long to floating-point typecasts work... yes checking if compiling long long to floating-point typecasts work... yes checking if converting unsigned long long to long double with precision... yes checking if overflows normally converting floating-point to integer values... yes checking if using special algorithm to convert long double to (unsigned) long values... no checking if using special algorithm to convert (unsigned) long to long double values... no checking if correctly converting long double to (unsigned) long long values... yes checking if correctly converting (unsigned) long long to long double values... yes checking if bad code for log2 routine is generated... no checking if high level library is enabled... yes checking additional programs should be built... no checking if deprecated public symbols are available... yes checking which version of public symbols to use by default... v18 checking whether to perform strict file format checks... no checking whether to have library information embedded in the executables... yes checking if alignment restrictions are strictly enforced... no configure: creating ./config.lt config.lt: creating libtool checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating src/libhdf5.settings config.status: creating Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating test/testcheck_version.sh config.status: creating test/testerror.sh config.status: creating test/H5srcdir_str.h config.status: creating test/testlibinfo.sh config.status: creating test/testlinks_env.sh config.status: creating test/test_plugin.sh config.status: creating testpar/Makefile config.status: creating testpar/testph5.sh config.status: creating perform/Makefile config.status: creating tools/Makefile config.status: creating tools/h5dump/Makefile config.status: creating tools/h5dump/testh5dump.sh config.status: creating tools/h5dump/testh5dumppbits.sh config.status: creating tools/h5dump/testh5dumpxml.sh config.status: creating tools/h5ls/testh5ls.sh config.status: creating tools/h5import/Makefile config.status: creating tools/h5import/h5importtestutil.sh config.status: creating tools/h5diff/Makefile config.status: creating tools/h5diff/testh5diff.sh config.status: creating tools/h5diff/testph5diff.sh config.status: creating tools/h5jam/Makefile config.status: creating tools/h5jam/testh5jam.sh config.status: creating tools/h5repack/Makefile config.status: creating tools/h5repack/h5repack.sh config.status: creating tools/h5repack/h5repack_plugin.sh config.status: creating tools/h5ls/Makefile config.status: creating tools/h5copy/Makefile config.status: creating tools/h5copy/testh5copy.sh config.status: creating tools/lib/Makefile config.status: creating tools/misc/Makefile config.status: creating tools/misc/h5cc config.status: creating tools/misc/testh5mkgrp.sh config.status: creating tools/misc/testh5repart.sh config.status: creating tools/h5stat/testh5stat.sh config.status: creating tools/h5stat/Makefile config.status: creating examples/Makefile config.status: creating examples/run-c-ex.sh config.status: creating examples/testh5cc.sh config.status: creating c++/Makefile config.status: creating c++/src/Makefile config.status: creating c++/src/h5c++ config.status: creating c++/test/Makefile config.status: creating c++/test/H5srcdir_str.h config.status: creating c++/examples/Makefile config.status: creating c++/examples/run-c++-ex.sh config.status: creating c++/examples/testh5c++.sh config.status: creating fortran/Makefile config.status: creating fortran/src/h5fc config.status: creating fortran/src/Makefile config.status: creating fortran/test/Makefile config.status: creating fortran/testpar/Makefile config.status: creating fortran/examples/Makefile config.status: creating fortran/examples/run-fortran-ex.sh config.status: creating fortran/examples/testh5fc.sh config.status: creating hl/Makefile config.status: creating hl/src/Makefile config.status: creating hl/test/Makefile config.status: creating hl/test/H5srcdir_str.h config.status: creating hl/tools/Makefile config.status: creating hl/tools/gif2h5/Makefile config.status: creating hl/tools/gif2h5/h52giftest.sh config.status: creating hl/examples/Makefile config.status: creating hl/examples/run-hlc-ex.sh config.status: creating hl/c++/Makefile config.status: creating hl/c++/src/Makefile config.status: creating hl/c++/test/Makefile config.status: creating hl/c++/examples/Makefile config.status: creating hl/c++/examples/run-hlc++-ex.sh config.status: creating hl/fortran/Makefile config.status: creating hl/fortran/src/Makefile config.status: creating hl/fortran/test/Makefile config.status: creating hl/fortran/examples/Makefile config.status: creating hl/fortran/examples/run-hlfortran-ex.sh config.status: creating src/H5config.h config.status: executing pubconf commands creating src/H5pubconf.h Post process src/libhdf5.settings config.status: executing depfiles commands config.status: executing libtool commands SUMMARY OF THE HDF5 CONFIGURATION ================================= General Information: ------------------- HDF5 Version: 1.8.12 Configured on: Wed Aug 5 15:16:53 CDT 2015 Configured by: justin@pacotaco Configure mode: production Host system: i386-apple-darwin14.4.0 Uname information: Darwin pacotaco 14.4.0 Darwin Kernel Version 14.4.0: Thu May 28 11:35:04 PDT 2015; root:xnu-2782.30.5~1/RELEASE_X86_64 x86_64 Byte sex: little-endian Libraries: static, shared Installation point: /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake Compiling Options: ------------------ Compilation Mode: production C Compiler: /usr/local/opt/open-mpi/bin/mpicc CFLAGS: -fPIC -O3 H5_CFLAGS: -ansi -pedantic -Wall -W -Wundef -Wshadow -Wpointer-arith -Wbad-function-cast -Wcast-qual -Wcast-align -Wwrite-strings -Wconversion -Waggregate-return -Wstrict-prototypes -Wmissing-prototypes -Wmissing-declarations -Wredundant-decls -Wnested-externs -Winline -O -fomit-frame-pointer -finline-functions AM_CFLAGS: CPPFLAGS: H5_CPPFLAGS: -DNDEBUG -UH5_DEBUG_API AM_CPPFLAGS: Shared C Library: yes Static C Library: yes Statically Linked Executables: no LDFLAGS: H5_LDFLAGS: AM_LDFLAGS: Extra libraries: -lz -ldl -lm Archiver: /usr/bin/ar Ranlib: ranlib Debugged Packages: API Tracing: no Languages: ---------- Fortran: yes Fortran Compiler: /usr/local/opt/open-mpi/bin/mpif90 Fortran 2003 Compiler: no Fortran Flags: -fPIC -ffree-line-length-0 -O H5 Fortran Flags: AM Fortran Flags: Shared Fortran Library: no Static Fortran Library: yes C++: no Features: --------- Parallel HDF5: yes High Level library: yes Threadsafety: no Default API Mapping: v18 With Deprecated Public Symbols: yes I/O filters (external): deflate(zlib) I/O filters (internal): shuffle,fletcher32,nbit,scaleoffset MPE: Direct VFD: no dmalloc: no Clear file buffers before write: yes Using memory checker: no Function Stack Tracing: no GPFS: no Strict File Format Checks: no Optimization Instrumentation: no Large File Support (LFS): yes =============================================================================== Running make on HDF5; this may take several minutes =============================================================================== Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/hdf5-1.8.12 && /usr/bin/make clean stdout: Making clean in src test -z "libhdf5.la" || rm -f libhdf5.la rm -f ./so_locations rm -rf .libs _libs rm -f H5detect H5make_libsettings rm -f *.o test -z "H5Tinit.c H5lib_settings.c" || rm -f H5Tinit.c H5lib_settings.c rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in test rm -f testhdf5 lheap ohdr stab gheap cache cache_api pool accum hyperslab istore bittests dt_arith dtypes dsets cmpd_dset filter_fail extend external efc objcopy links unlink big mtime fillval mount flush1 flush2 app_ref enum set_extent ttsafe getname vfd ntypes dangle dtransform reserved cross_read freespace mf btree2 fheap file_image unregister error_test err_compat tcheck_version testmeta links_env plugin test -z "libdynlib1.la libdynlib2.la libdynlib3.la" || rm -f libdynlib1.la libdynlib2.la libdynlib3.la rm -f ./so_locations rm -rf .libs _libs test -z "libh5test.la" || rm -f libh5test.la rm -f ./so_locations rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog accum.h5 cmpd_dset.h5 compact_dataset.h5 dataset.h5 dset_offset.h5 max_compact_dataset.h5 simple.h5 set_local.h5 random_chunks.h5 huge_chunks.h5 chunk_cache.h5 big_chunk.h5 chunk_expand.h5 copy_dcpl_newfile.h5 extend.h5 istore.h5 extlinks*.h5 frspace.h5 links*.h5 sys_file1 tfile[1-7].h5 th5s[1-4].h5 lheap.h5 fheap.h5 ohdr.h5 stab.h5 extern_[1-3].h5 extern_[1-4][ab].raw gheap[0-4].h5 dt_arith[1-2] links.h5 links[0-6]*.h5 extlinks[0-15].h5 tmp big.data big[0-9][0-9][0-9][0-9][0-9].h5 stdio.h5 sec2.h5 dtypes[0-9].h5 dtypes1[0].h5 dt_arith[1-2].h5 tattr.h5 tselect.h5 mtime.h5 unlink.h5 unicode.h5 coord.h5 fillval_[0-9].h5 fillval.raw mount_[0-9].h5 testmeta.h5 ttime.h5 trefer[1-3].h5 tvltypes.h5 tvlstr.h5 tvlstr2.h5 flush.h5 enum1.h5 titerate.h5 ttsafe.h5 tarray1.h5 tgenprop.h5 tmisc[0-9]*.h5 set_extent[1-5].h5 ext[12].bin getname.h5 getname[1-3].h5 sec2_file.h5 direct_file.h5 family_file000[0-3][0-9].h5 new_family_v16_000[0-3][0-9].h5 multi_file-[rs].h5 core_file plugin.h5 new_move_[ab].h5 ntypes.h5 dangle.h5 error_test.h5 err_compat.h5 dtransform.h5 test_filters.h5 get_file_name.h5 tstint[1-2].h5 unlink_chunked.h5 btree2.h5 objcopy_src.h5 objcopy_dst.h5 objcopy_ext.dat trefer1.h5 trefer2.h5 app_ref.h5 tcheck_version_*.out tcheck_version_*.err efc[0-5].h5 log_vfd_out.log new_multi_file_v16-r.h5 new_multi_file_v16-s.h5 split_get_file_image_test-m.h5 split_get_file_image_test-r.h5 file_image_core_test.h5.copy unregister_filter_1.h5 unregister_filter_2.h5 Making clean in testpar rm -f t_mpi t_posix_compliant testphdf5 t_cache t_pflush1 t_pflush2 t_shapesame rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog MPItest.h5 Para*.h5 CacheTestDummy.h5 go Making clean in tools Making clean in lib rm -rf .libs _libs test -z "libh5tools.la" || rm -f libh5tools.la rm -f ./so_locations rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in h5diff rm -f h5diff ph5diff rm -f h5diffgentest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 expect_sorted actual_sorted Making clean in h5ls rm -f h5ls rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in h5dump rm -f h5dump rm -f h5dumpgentest binread rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.bin Making clean in misc rm -f h5debug h5repart h5mkgrp rm -f h5repart_gentest talign repart_test test -z "h5redeploy" || rm -f h5redeploy rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 Making clean in h5import rm -f h5import rm -f h5importtest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.bin Making clean in h5repack rm -f h5repack rm -f h5repacktst test -z "libdynlibadd.la" || rm -f libdynlibadd.la rm -f ./so_locations rm -rf .libs _libs rm -f testh5repack_detect_szip rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.bin Making clean in h5jam rm -f h5jam h5unjam rm -f tellub h5jamgentest getub rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 Making clean in h5copy rm -f h5copy rm -f h5copygentest rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 Making clean in h5stat rm -f h5stat rm -f h5stat_gentest test -z "" || rm -f rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 ../testfiles/fst_family*.h5 ../testfiles/scd_family*.h5 rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in . rm -rf .libs _libs rm -f *.lo if test -d ii_files; then \ rm -f -rf ii_files; \ fi Making clean in fortran Making clean in src test -z "libhdf5_fortran.la" || rm -f libhdf5_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f H5match_types H5fortran_detect H5test_kind rm -f *.o test -z "H5fortran_types.f90 H5f90i_gen.h H5fort_type_defines.h H5fortran_detect.f90" || rm -f H5fortran_types.f90 H5f90i_gen.h H5fort_type_defines.h H5fortran_detect.f90 rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in test rm -f fortranlib_test fflush1 fflush2 fortranlib_test_1_8 rm -rf .libs _libs test -z "libh5test_fortran.la" || rm -f libh5test_fortran.la rm -f ./so_locations rm -f *.o test -z "*.tmp" || rm -f *.tmp rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 Making clean in testpar rm -f parallel_test rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog parf[12].h5 rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in hl Making clean in src test -z "libhdf5_hl.la" || rm -f libhdf5_hl.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in test rm -f test_lite test_image test_file_image test_table test_ds test_packet test_dset_opt rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog combine_tables[1-2].h5 test_ds[1-9].h5 test_ds10.h5 test_image[1-3].h5 file_img[1-2].h5 test_lite[1-4].h5 test_table.h5 test_packet_table.h5 test_packet_compress.h5 test_detach.h5 test_dectris.h5 Making clean in tools Making clean in gif2h5 rm -f gif2h5 h52gif rm -rf .libs _libs rm -f h52gifgentst rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog *.h5 *.gif rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in fortran Making clean in src test -z "libhdf5hl_fortran.la" || rm -f libhdf5hl_fortran.la rm -f ./so_locations rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in test rm -f tstds tstlite tstimage tsttable rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog dsetf[1-4].h5 f1img.h5 f1tab.h5 tstds.h5 rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog rm -rf .libs _libs rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Making clean in perform rm -f h5perf_serial h5perf rm -f iopipe chunk overhead zip_perf perf_meta perf test -z "*.h5 *.raw *.dat x-gnuplot perftest.out" || rm -f *.h5 *.raw *.dat x-gnuplot perftest.out rm -rf .libs _libs rm -f *.o rm -f *.lo rm -f -rf *.chkexe *.chklog *.clog Executing: cd /Users/justin/Software/petsc/arch-darwin-c-opt-firedrake/externalpackages/hdf5-1.8.12 && /usr/bin/make -j 4