This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HDF5 configure 1.8.10-patch1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug --libdir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/lib CC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc CFLAGS= -fPIC -wd1572 -g --enable-parallel --enable-fortran FC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 F9X=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 F90=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 --enable-shared ## --------- ## ## Platform. ## ## --------- ## hostname = n0004.scs00 uname -m = x86_64 uname -r = 2.6.32-431.29.2.el6.x86_64 uname -s = Linux uname -v = #1 SMP Tue Sep 9 13:45:55 CDT 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /global/software/sl-6.x86_64/modules/tools/cmake/3.2.2/bin PATH: /global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/bin PATH: /global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/bin PATH: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin PATH: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64 PATH: /global/software/sl-6.x86_64/modules/langs/perl/5.20.0/bin PATH: /global/software/sl-6.x86_64/modules/tools/mercurial/2.0.2/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/local/sbin PATH: /usr/sbin PATH: /sbin PATH: /opt/dell/srvadmin/bin PATH: /global/home/groups/allhands/bin PATH: /global/home/groups/allhands/bin PATH: /global/home/users/gbisht/bin ## ----------- ## ## Core tests. ## ## ----------- ## configure:3252: checking for a BSD-compatible install configure:3320: result: /usr/bin/install -c configure:3331: checking whether build environment is sane configure:3386: result: yes configure:3537: checking for a thread-safe mkdir -p configure:3576: result: /bin/mkdir -p configure:3583: checking for gawk configure:3599: found /bin/gawk configure:3610: result: gawk configure:3621: checking whether make sets $(MAKE) configure:3643: result: yes configure:3740: checking whether make supports nested variables configure:3757: result: yes configure:3780: checking whether to enable maintainer-specific portions of Makefiles configure:3789: result: no configure:3833: checking build system type configure:3847: result: x86_64-unknown-linux-gnu configure:3867: checking host system type configure:3880: result: x86_64-unknown-linux-gnu configure:3954: checking shell variables initial values ACLOCAL='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run aclocal-1.12' ALLHANDS_BASHRC=1 AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS= AM_CPPFLAGS= AM_CXXFLAGS= AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY=0 AM_FCFLAGS= AM_LDFLAGS= AM_V='$(V)' AUTOCONF='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoconf' AUTOHEADER='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoheader' AUTOMAKE='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run automake-1.12' AWK=gawk BASH=/bin/sh BASHOPTS=cmdhist:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=([0]="10") BASH_ARGV=([0]="--enable-shared" [1]="F90=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90" [2]="F9X=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90" [3]="FC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90" [4]="--enable-fortran" [5]="--enable-parallel" [6]="CFLAGS= -fPIC -wd1572 -g " [7]="CC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc" [8]="--libdir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/lib" [9]="--prefix=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug") BASH_CMDS=() BASH_LINENO=([0]="0") BASH_SOURCE=([0]="./configure") BASH_VERSINFO=([0]="4" [1]="1" [2]="2" [3]="1" [4]="release" [5]="x86_64-redhat-linux-gnu") BASH_VERSION='4.1.2(1)-release' CC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc CFLAGS=' -fPIC -wd1572 -g ' CLICOLOR=1 CLM_CASE_DIR=/clusterfs/esd/esd2/gbisht/MODELS/clm4_repos/clm4_cases CLM_CASE_RUN=/clusterfs/esd/esd2/gbisht/MODELS/clm4_repos/clm4_cases CLM_COUPLED_MODEL=/clusterfs/esd/esd2/gbisht/MODELS/clm4_repos/clm4-pf-bandre CLM_INPUTDATA=/clusterfs/esd/esd2/gbisht/ccsm_inputdata CLM_RUN_DIR=/clusterfs/esd/esd2/gbisht//MODELS/clm4_coupled_runs CMAKE_DIR=/global/software/sl-6.x86_64/modules/tools/cmake/3.2.2 COLUMNS=270 CPATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include CPPFLAGS= CVS_RSH=ssh CXXFLAGS= CYGPATH_W=echo DEFAULT_LIBS= DIRSTACK=() DISPLAY=n0004.scs00:19.0 DUALCASE=1 ECHO_C= ECHO_N=-n ECHO_T= EUID=41316 F90=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 F9X=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 FC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 FCFLAGS= FPATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include GROUPS=() G_BROKEN_FILENAMES=1 HDF5_DIR=/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p HISTCONTROL=ignoredups HISTSIZE=1000 HOME=/global/home/users/gbisht HOSTNAME=n0004.scs00 HOSTTYPE=x86_64 IFS=' ' INCLUDE=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include INFOPATH=/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/share/info INSTALL='/usr/bin/install -c' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INTEL_DIR=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090 LANGUAGE=C LAPACK_DIR=/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel LAPACK_LIBDIR=/global/software/sl-6.x86_64/modules/intel/2013.5.192/lapack/3.4.2-intel/lib LC_ALL=C LDFLAGS= LD_LIBRARY_PATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 LESSOPEN='|/usr/bin/lesspipe.sh %s' LIBOBJS= LIBRARY_PATH=/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 LINENO=3954 LINES=70 LM_LICENSE_FILE=28518@lmgr0.hpcs.lbl.gov LOADEDMODULES=mercurial/2.0.2:perl/5.20.0:xml-namespacesupport/1.11:xml-sax-base/1.08:xml-sax/0.99:xml-libxml/2.0116:intel/2015.0.090:openmpi/1.8.3-intel:hdf5/1.8.13-intel-p:netcdf/4.3.2-intel-p:mkl/2015.0.090:lapack/3.5.0-intel:cmake/3.2.2 LOGNAME=gbisht LSCOLORS=ExFxBxDxCxegedabagacad LS_COLORS='rs=0:di=38;5;27:ln=38;5;51:mh=44;38;5;15:pi=40;38;5;11:so=38;5;13:do=38;5;5:bd=48;5;232;38;5;11:cd=48;5;232;38;5;3:or=48;5;232;38;5;9:mi=05;48;5;232;38;5;15:su=48;5;196;38;5;15:sg=48;5;11;38;5;16:ca=48;5;196;38;5;226:tw=48;5;10;38;5;16:ow=48;5;10;38;5;21:st=48;5;21;38;5;15:ex=38;5;34:*.tar=38;5;9:*.tgz=38;5;9:*.arj=38;5;9:*.taz=38;5;9:*.lzh=38;5;9:*.lzma=38;5;9:*.tlz=38;5;9:*.txz=38;5;9:*.zip=38;5;9:*.z=38;5;9:*.Z=38;5;9:*.dz=38;5;9:*.gz=38;5;9:*.lz=38;5;9:*.xz=38;5;9:*.bz2=38;5;9:*.tbz=38;5;9:*.tbz2=38;5;9:*.bz=38;5;9:*.tz=38;5;9:*.deb=38;5;9:*.rpm=38;5;9:*.jar=38;5;9:*.rar=38;5;9:*.ace=38;5;9:*.zoo=38;5;9:*.cpio=38;5;9:*.7z=38;5;9:*.rz=38;5;9:*.jpg=38;5;13:*.jpeg=38;5;13:*.gif=38;5;13:*.bmp=38;5;13:*.pbm=38;5;13:*.pgm=38;5;13:*.ppm=38;5;13:*.tga=38;5;13:*.xbm=38;5;13:*.xpm=38;5;13:*.tif=38;5;13:*.tiff=38;5;13:*.png=38;5;13:*.svg=38;5;13:*.svgz=38;5;13:*.mng=38;5;13:*.pcx=38;5;13:*.mov=38;5;13:*.mpg=38;5;13:*.mpeg=38;5;13:*.m2v=38;5;13:*.mkv=38;5;13:*.ogm=38;5;13:*.mp4=38;5;13:*.m4v=38;5;13:*.mp4v=38;5;13:*.vob=38;5;13:*.qt=38;5;13:*.nuv=38;5;13:*.wmv=38;5;13:*.asf=38;5;13:*.rm=38;5;13:*.rmvb=38;5;13:*.flc=38;5;13:*.avi=38;5;13:*.fli=38;5;13:*.flv=38;5;13:*.gl=38;5;13:*.dl=38;5;13:*.xcf=38;5;13:*.xwd=38;5;13:*.yuv=38;5;13:*.cgm=38;5;13:*.emf=38;5;13:*.axv=38;5;13:*.anx=38;5;13:*.ogv=38;5;13:*.ogx=38;5;13:*.aac=38;5;45:*.au=38;5;45:*.flac=38;5;45:*.mid=38;5;45:*.midi=38;5;45:*.mka=38;5;45:*.mp3=38;5;45:*.mpc=38;5;45:*.ogg=38;5;45:*.ra=38;5;45:*.wav=38;5;45:*.axa=38;5;45:*.oga=38;5;45:*.spx=38;5;45:*.xspf=38;5;45:' MACHTYPE=x86_64-redhat-linux-gnu MAINT='#' MAINTAINER_MODE_FALSE= MAINTAINER_MODE_TRUE='#' MAKEFLAGS= MAKEINFO='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run makeinfo' MANPATH=/global/software/sl-6.x86_64/modules/tools/cmake/3.2.2/man:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/share/man:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/share/man:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/man/en_US:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-libxml/2.0116/man:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax/0.99/man:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax-base/1.08/man:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-namespacesupport/1.11/man:/global/software/sl-6.x86_64/modules/langs/perl/5.20.0/share/man:/global/software/sl-6.x86_64/modules/tools/mercurial/2.0.2/share/man:/usr/share/man:/usr/local/man:/usr/local/man MERCURIAL_DIR=/global/software/sl-6.x86_64/modules/tools/mercurial/2.0.2 MFLAGS= MIC_LD_LIBRARY_PATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/mic:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/mic MIC_LIBRARY_PATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/mic:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/mic MISSING='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing' MKDIR_P='/bin/mkdir -p' MKLROOT=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl MKL_DIR=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl MODULEPATH=/global/software/sl-6.x86_64/modfiles/tools:/global/software/sl-6.x86_64/modfiles/langs:/global/software/sl-6.x86_64/modfiles/perl/5.20.0:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090 MODULESHOME=/usr/Modules MYCSMNGEEDATA=/clusterfs/esd/esd2/gbisht/MODELS/clm4_repos/ngee-inputdata-examples-gbisht NETCDF= NETCDF_DIR=/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p NLSPATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/locale/en_US:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/locale/en_US OPENMPI_DIR=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PACKAGE=hdf5 PACKAGE_BUGREPORT=help@hdfgroup.org PACKAGE_NAME=HDF5 PACKAGE_STRING='HDF5 1.8.10-patch1' PACKAGE_TARNAME=hdf5 PACKAGE_URL= PACKAGE_VERSION=1.8.10-patch1 PARALLELIO_LIB=/clusterfs/esd/esd2/gbisht/pio_lib/src PATH=/global/software/sl-6.x86_64/modules/tools/cmake/3.2.2/bin:/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/bin:/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/bin:/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64:/global/software/sl-6.x86_64/modules/langs/perl/5.20.0/bin:/global/software/sl-6.x86_64/modules/tools/mercurial/2.0.2/bin:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/global/home/groups/allhands/bin:/global/home/groups/allhands/bin:/global/home/users/gbisht/bin PATH_SEPARATOR=: PERL5LIB=/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-libxml/2.0116/lib/perl5:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax/0.99/lib/perl5:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax-base/1.08/lib/perl5:/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-namespacesupport/1.11/lib/perl5:/global/software/sl-6.x86_64/modules/langs/perl/5.20.0/lib/5.20.0 PERL_DIR=/global/software/sl-6.x86_64/modules/langs/perl/5.20.0 PETSC_ARCH=lrc-intel-2013-fort-debug PETSC_DIR=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3 PFLOTRAN_COUPLED_MODEL=/clusterfs/esd/esd2/gbisht/MODELS/pflotran_coupled_gbisht PFLOTRAN_DIR=/clusterfs/esd/esd2/gbisht/MODELS/clm4_repos/pflotran-coupled-bandre PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=26130 PS1='$ ' PS2='> ' PS4='+ ' PWD=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1 PYTHONPATH=/global/software/sl-6.x86_64/modules/tools/mercurial/2.0.2/lib64/python2.6/site-packages SET_MAKE= SHELL=/bin/sh SHELLOPTS=braceexpand:hashall:interactive-comments:posix SHLVL=3 SINK_LD_LIBRARY_PATH=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/mic:/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/mic SSH_CLIENT='198.128.203.169 50324 22' SSH_CONNECTION='198.128.203.169 50324 10.0.2.4 22' SSH_TTY=/dev/pts/38 TERM=xterm-256color UID=41316 USER=gbisht USE_MAINTAINER_MODE=no VERSION=1.8.10-patch1 XML_LIBXML_DIR=/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-libxml/2.0116 XML_NAMESPACESUPPORT_DIR=/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-namespacesupport/1.11 XML_SAX_BASE_DIR=/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax-base/1.08 XML_SAX_DIR=/global/software/sl-6.x86_64/modules/perl/5.20.0/xml-sax/0.99 _='checking shell variables initial values... ' _LMFILES_=/global/software/sl-6.x86_64/modfiles/tools/mercurial/2.0.2:/global/software/sl-6.x86_64/modfiles/langs/perl/5.20.0:/global/software/sl-6.x86_64/modfiles/perl/5.20.0/xml-namespacesupport/1.11:/global/software/sl-6.x86_64/modfiles/perl/5.20.0/xml-sax-base/1.08:/global/software/sl-6.x86_64/modfiles/perl/5.20.0/xml-sax/0.99:/global/software/sl-6.x86_64/modfiles/perl/5.20.0/xml-libxml/2.0116:/global/software/sl-6.x86_64/modfiles/langs/intel/2015.0.090:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090/openmpi/1.8.3-intel:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090/hdf5/1.8.13-intel-p:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090/netcdf/4.3.2-intel-p:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090/mkl/2015.0.090:/global/software/sl-6.x86_64/modfiles/intel/2015.0.090/lapack/3.5.0-intel:/global/software/sl-6.x86_64/modfiles/tools/cmake/3.2.2 ac_abs_confdir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1 ac_arg=FC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 ac_aux_dir=bin ac_build_alias=x86_64-unknown-linux-gnu ac_cache_corrupted=false ac_clean_files= ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5' ac_compiler_gnu= ac_confdir=. ac_config_commands=' pubconf' ac_config_guess='/bin/sh bin/config.guess' ac_config_headers=' src/H5config.h' ac_config_libobj_dir=. ac_config_sub='/bin/sh bin/config.sub' ac_configure='/bin/sh bin/configure' ac_configure_args=' '\''--prefix=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug'\'' '\''--libdir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/lib'\'' '\''CC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc'\'' '\''CFLAGS= -fPIC -wd1572 -g '\'' '\''--enable-parallel'\'' '\''--enable-fortran'\'' '\''FC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90'\'' '\''F9X=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90'\'' '\''F90=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90'\'' '\''--enable-shared'\''' ac_cpp='$CPP $CPPFLAGS' ac_cv_build=x86_64-unknown-linux-gnu ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=' -fPIC -wd1572 -g ' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-unknown-linux-gnu ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_make_make_set=yes ac_dashdash= ac_default_prefix=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/hdf5 ac_dir=bin ac_env_CCC_set= ac_env_CCC_value= ac_env_CC_set=set ac_env_CC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc ac_env_CFLAGS_set=set ac_env_CFLAGS_value=' -fPIC -wd1572 -g ' ac_env_CPPFLAGS_set= ac_env_CPPFLAGS_value= ac_env_CPP_set= ac_env_CPP_value= ac_env_CXXCPP_set= ac_env_CXXCPP_value= ac_env_CXXFLAGS_set= ac_env_CXXFLAGS_value= ac_env_CXX_set= ac_env_CXX_value= ac_env_FCFLAGS_set= ac_env_FCFLAGS_value= ac_env_FC_set=set ac_env_FC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 ac_env_LDFLAGS_set= ac_env_LDFLAGS_value= ac_env_LIBS_set= ac_env_LIBS_value= ac_env_build_alias_set= ac_env_build_alias_value= ac_env_host_alias_set= ac_env_host_alias_value= ac_env_target_alias_set= ac_env_target_alias_value= ac_envvar=F90 ac_exec_ext= ac_ext=c ac_hostname=n0004.scs00 ac_includes_default='#include #ifdef HAVE_SYS_TYPES_H # include #endif #ifdef HAVE_SYS_STAT_H # include #endif #ifdef STDC_HEADERS # include # include #else # ifdef HAVE_STDLIB_H # include # endif #endif #ifdef HAVE_STRING_H # if !defined STDC_HEADERS && defined HAVE_MEMORY_H # include # endif # include #endif #ifdef HAVE_STRINGS_H # include #endif #ifdef HAVE_INTTYPES_H # include #endif #ifdef HAVE_STDINT_H # include #endif #ifdef HAVE_UNISTD_H # include #endif' ac_init_help= ac_init_version=false ac_install_sh='bin/install-sh -c' ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5' ac_ls_di='943588191 .' ac_make=make ac_msg='sources are in ., but `cd .'\'' does not work' ac_must_keep_next=false ac_new_set= ac_new_val= ac_old_set= ac_old_val= ac_optarg=yes ac_option=--enable-shared ac_pass=2 ac_precious_vars='build_alias host_alias target_alias CC CFLAGS LDFLAGS LIBS CPPFLAGS FC FCFLAGS CXX CXXFLAGS CCC CXXCPP CPP' ac_prev= ac_prog=gawk ac_pwd=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1 ac_pwd_ls_di='943588191 .' ac_save_IFS=' ' ac_script='s/[\\$]/&&/g;s/;s,x,x,$//' ac_signal=0 ac_site_file=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/etc/config.site ac_site_file1=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/share/config.site ac_site_file2=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/etc/config.site ac_srcdir_defaulted=yes ac_subst_files= ac_subst_vars='am__EXEEXT_FALSE am__EXEEXT_TRUE LTLIBOBJS LIBOBJS SETX SEARCH BUILD_HDF5_HL_CONDITIONAL_FALSE BUILD_HDF5_HL_CONDITIONAL_TRUE BUILD_FORTRAN_CONDITIONAL_FALSE BUILD_FORTRAN_CONDITIONAL_TRUE BUILD_PARALLEL_CONDITIONAL_FALSE BUILD_PARALLEL_CONDITIONAL_TRUE BUILD_CXX_CONDITIONAL_FALSE BUILD_CXX_CONDITIONAL_TRUE STRICT_FORMAT_CHECKS DEFAULT_API_VERSION DEPRECATED_SYMBOLS BUILD_ALL_CONDITIONAL_FALSE BUILD_ALL_CONDITIONAL_TRUE HL_FOR HL DYNAMIC_DIRS ROOT CXX_VERSION FC_VERSION CC_VERSION WORDS_BIGENDIAN BYTESEX CONFIG_MODE CONFIG_USER CONFIG_DATE H5_VERSION DIRECT_VFD_CONDITIONAL_FALSE DIRECT_VFD_CONDITIONAL_TRUE USE_FILTER_SCALEOFFSET USE_FILTER_NBIT USE_FILTER_FLETCHER32 USE_FILTER_SHUFFLE FILTERS MPI_GET_SIZE ADD_PARALLEL_FILES USINGMEMCHECKER CLEARFILEBUF INSTRUMENT_LIBRARY TRACE_API DEBUG_PKG H5_LONE_COLON PTHREAD BUILD_SHARED_SZIP_CONDITIONAL_FALSE BUILD_SHARED_SZIP_CONDITIONAL_TRUE LL_PATH USE_FILTER_SZIP USE_FILTER_DEFLATE AM_MAKEFLAGS LT_STATIC_EXEC CPP OTOOL64 OTOOL LIPO NMEDIT DSYMUTIL MANIFEST_TOOL RANLIB ac_ct_AR LN_S NM ac_ct_DUMPBIN DUMPBIN LD FGREP EGREP GREP SED LIBTOOL OBJDUMP DLLTOOL AS CXX_SHARED_CONDITIONAL_FALSE CXX_SHARED_CONDITIONAL_TRUE H5_CXX_SHARED FORTRAN_SHARED_CONDITIONAL_FALSE FORTRAN_SHARED_CONDITIONAL_TRUE H5_FORTRAN_SHARED TESTPARALLEL RUNPARALLEL RUNSERIAL PARALLEL TIME TR AR PERL CXXCPP am__fastdepCXX_FALSE am__fastdepCXX_TRUE CXXDEPMODE ac_ct_CXX CXXFLAGS FORTRAN_DEFAULT_REALisDBLE_F_FALSE FORTRAN_DEFAULT_REALisDBLE_F_TRUE FORTRAN_2003_CONDITIONAL_F_FALSE FORTRAN_2003_CONDITIONAL_F_TRUE FORTRAN_HAVE_SIZEOF_FALSE FORTRAN_HAVE_SIZEOF_TRUE FCLIBS F9XMODEXT F9XMODFLAG FSEARCH_DIRS F9XSUFFIXFLAG FCFLAGS_f90 ac_ct_FC FCFLAGS OBJECT_NAMELEN_DEFAULT_F SIZE_T HID_T HSSIZE_T HSIZE_T HADDR_T R_INTEGER R_LARGE HAVE_FORTRAN_2003 HDF5_INTERFACES am__fastdepCC_FALSE am__fastdepCC_TRUE CCDEPMODE am__nodep AMDEPBACKSLASH AMDEP_FALSE AMDEP_TRUE am__quote am__include DEPDIR OBJEXT EXEEXT ac_ct_CC LDFLAGS CFLAGS CC UNAME_INFO enable_static enable_shared STATIC_SHARED THREADSAFE DIRECT_VFD HAVE_DMALLOC CODESTACK INSTRUMENT LARGEFILE GPFS HDF5_HL CXX HDF_CXX FC2003 FC HDF_FORTRAN2003 HDF_FORTRAN STATIC_EXEC MPE EXTERNAL_FILTERS AM_LDFLAGS AM_CPPFLAGS AM_CXXFLAGS AM_FCFLAGS AM_CFLAGS H5_LDFLAGS H5_CXXFLAGS H5_FCFLAGS H5_CPPFLAGS H5_CFLAGS CPPFLAGS host_os host_vendor host_cpu host build_os build_vendor build_cpu build MAINT MAINTAINER_MODE_FALSE MAINTAINER_MODE_TRUE AM_BACKSLASH AM_DEFAULT_VERBOSITY AM_DEFAULT_V AM_V am__untar am__tar AMTAR am__leading_dot SET_MAKE AWK mkdir_p MKDIR_P INSTALL_STRIP_PROGRAM STRIP install_sh MAKEINFO AUTOHEADER AUTOMAKE AUTOCONF ACLOCAL VERSION PACKAGE CYGPATH_W am__isrc INSTALL_DATA INSTALL_SCRIPT INSTALL_PROGRAM target_alias host_alias build_alias LIBS ECHO_T ECHO_N ECHO_C DEFS mandir localedir libdir psdir pdfdir dvidir htmldir infodir docdir oldincludedir includedir localstatedir sharedstatedir sysconfdir datadir datarootdir libexecdir sbindir bindir program_transform_name prefix exec_prefix PACKAGE_URL PACKAGE_BUGREPORT PACKAGE_STRING PACKAGE_VERSION PACKAGE_TARNAME PACKAGE_NAME PATH_SEPARATOR SHELL' ac_tool_prefix= ac_unique_file=src/H5.c ac_unrecognized_opts= ac_unrecognized_sep= ac_user_opts=' enable_option_checking enable_silent_rules enable_maintainer_mode enable_dependency_tracking enable_unsupported enable_fortran enable_fortran2003 enable_cxx enable_shared enable_static with_pic enable_fast_install with_gnu_ld with_sysroot enable_libtool_lock enable_static_exec enable_sharedlib_rpath enable_production enable_largefile enable_linux_lfs with_fnord with_dmalloc with_zlib with_szlib with_pthread enable_threadsafe enable_gpfs enable_debug enable_codestack enable_metadata_trace_file enable_trace enable_instrument enable_clear_file_buffers enable_using_memchecker enable_parallel with_mpe enable_mpi_size enable_filters with_default_vfd enable_direct_vfd enable_dconv_exception enable_dconv_accuracy enable_hl enable_build_all enable_deprecated_symbols with_default_api_version enable_strict_format_checks enable_embedded_libinfo ' ac_useropt=shared ac_useropt_orig=shared ac_val='${datarootdir}/man' ac_var=CPP ac_word=gawk am__api_version=1.12 am__leading_dot=. am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' am_aux_dir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin am_cv_make_support_nested_variables=yes am_lf=' ' am_make=make am_missing_run='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run ' am_sleep_pid=26266 as_basename=basename as_bourne_compatible='if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then : emulate sh NULLCMD=: # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which # is contrary to our usage. Disable this feature. alias -g '\''${1+"$@"}'\''='\''"$@"'\'' setopt NO_GLOB_SUBST else case `(set -o) 2>/dev/null` in #( *posix*) : set -o posix ;; #( *) : ;; esac fi ' as_cr_LETTERS=ABCDEFGHIJKLMNOPQRSTUVWXYZ as_cr_Letters=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ as_cr_alnum=abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789 as_cr_digits=0123456789 as_cr_letters=abcdefghijklmnopqrstuvwxyz as_dir=/bin as_dirname=dirname as_echo='printf %s\n' as_echo_n='printf %s' as_executable_p=as_fn_executable_p as_expr=expr as_have_required=yes as_lineno_1=477 as_lineno_1a=477 as_lineno_2=478 as_lineno_2a=478 as_ln_s='ln -s' as_me=configure as_mkdir_p='mkdir -p "$as_dir"' as_myself=./configure as_nl=' ' as_required='as_fn_return () { (exit $1); } as_fn_success () { as_fn_return 0; } as_fn_failure () { as_fn_return 1; } as_fn_ret_success () { return 0; } as_fn_ret_failure () { return 1; } exitcode=0 as_fn_success || { exitcode=1; echo as_fn_success failed.; } as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; } as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; } as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; } if ( set x; as_fn_ret_success y && test x = "$1" ); then : else exitcode=1; echo positional parameters were not saved. fi test x$exitcode = x0 || exit 1 test -x / || exit 1' as_save_IFS=' ' as_suggested=' as_lineno_1=198 as_lineno_1a=$LINENO as_lineno_2=199 as_lineno_2a=$LINENO eval '\''test "x$as_lineno_1'\''$as_run'\''" != "x$as_lineno_2'\''$as_run'\''" && test "x`expr $as_lineno_1'\''$as_run'\'' + 1`" = "x$as_lineno_2'\''$as_run'\''"'\'' || exit 1 test -n "${ZSH_VERSION+set}${BASH_VERSION+set}" || ( ECHO='\''\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'\'' ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO ECHO=$ECHO$ECHO$ECHO$ECHO$ECHO$ECHO PATH=/empty FPATH=/empty; export PATH FPATH test "X`printf %s $ECHO`" = "X$ECHO" \ || test "X`print -r -- $ECHO`" = "X$ECHO" ) || exit 1 test $(( 1 + 1 )) = 2 || exit 1' as_test_x='test -x' as_tr_cpp='eval sed '\''y%*abcdefghijklmnopqrstuvwxyz%PABCDEFGHIJKLMNOPQRSTUVWXYZ%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' as_tr_sh='eval sed '\''y%*+%pp%;s%[^_abcdefghijklmnopqrstuvwxyzABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789]%_%g'\''' as_unset=as_fn_unset as_var=MAILPATH bindir='${exec_prefix}/bin' build=x86_64-unknown-linux-gnu build_cpu=x86_64 build_os=linux-gnu build_vendor=unknown cache_file=/dev/null cross_compiling=no datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_fortran=yes enable_parallel=yes enable_shared=yes exec_prefix=NONE host=x86_64-unknown-linux-gnu host_cpu=x86_64 host_os=linux-gnu host_vendor=unknown htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/install-sh' libdir=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/lib libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' no_create= no_recursion= oldincludedir=/usr/include pdfdir='${docdir}' prefix=/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug program_prefix=NONE program_suffix=NONE program_transform_name=s,x,x, psdir='${docdir}' saved_user_CFLAGS=' -fPIC -wd1572 -g ' saved_user_CPPFLAGS= saved_user_CXXFLAGS= saved_user_FCFLAGS= saved_user_LDFLAGS= sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' silent= site= srcdir=. subdirs= sysconfdir='${prefix}/etc' target= verbose= x_includes=NONE x_libraries=NONE configure:3957: result: done configure:4016: checking if basename works configure:4022: result: yes configure:4026: checking if xargs works configure:4032: result: yes configure:4040: checking for cached host configure:4047: result: none configure:4113: checking for config x86_64-unknown-linux-gnu configure:4121: result: no configure:4113: checking for config x86_64-unknown-linux-gnu configure:4121: result: no configure:4113: checking for config unknown-linux-gnu configure:4121: result: no configure:4113: checking for config unknown-linux-gnu configure:4121: result: no configure:4113: checking for config x86_64-linux-gnu configure:4121: result: no configure:4113: checking for config x86_64-linux-gnu configure:4121: result: no configure:4113: checking for config x86_64-unknown configure:4121: result: no configure:4113: checking for config linux-gnu configure:4117: result: found configure:4133: checking for config ./config/site-specific/host-n0004.scs00 configure:4141: result: no configure:4133: checking for config ./config/site-specific/host-scs00 configure:4141: result: no configure:4218: checking for gcc configure:4245: result: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc configure:4474: checking for C compiler version configure:4483: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc --version >&5 icc (ICC) 15.0.0 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:4494: $? = 0 configure:4483: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -v >&5 icc version 15.0.0 (gcc version 4.4.7 compatibility) configure:4494: $? = 0 configure:4483: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -V >&5 Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 15.0.0.090 Build 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:4494: $? = 0 configure:4483: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' icc: command line error: no files specified; for help type "icc -help" configure:4494: $? = 1 configure:4514: checking whether the C compiler works configure:4536: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -fPIC -wd1572 -g conftest.c >&5 configure:4540: $? = 0 configure:4588: result: yes configure:4591: checking for C compiler default output file name configure:4593: result: a.out configure:4599: checking for suffix of executables configure:4606: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c >&5 configure:4610: $? = 0 configure:4632: result: configure:4654: checking whether we are cross compiling configure:4662: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c >&5 configure:4666: $? = 0 configure:4673: ./conftest configure:4677: $? = 0 configure:4692: result: no configure:4697: checking for suffix of object files configure:4719: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -c -fPIC -wd1572 -g conftest.c >&5 configure:4723: $? = 0 configure:4744: result: o configure:4748: checking whether we are using the GNU C compiler configure:4767: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -c -fPIC -wd1572 -g conftest.c >&5 configure:4767: $? = 0 configure:4776: result: yes configure:4785: checking whether /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc accepts -g configure:4805: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -c -g conftest.c >&5 configure:4805: $? = 0 configure:4846: result: yes configure:4863: checking for /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc option to accept ISO C89 configure:4926: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -c -fPIC -wd1572 -g conftest.c >&5 configure:4926: $? = 0 configure:4939: result: none needed configure:4970: checking for style of include used by make configure:4998: result: GNU configure:5024: checking dependency style of /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc configure:5135: result: gcc3 configure:5157: checking if unsupported combinations of configure options are allowed configure:5167: result: no configure:5182: checking if Fortran interface enabled configure:5200: checking if Fortran 2003 interface enabled configure:5362: checking for Fortran compiler version configure:5371: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 --version >&5 ifort (IFORT) 15.0.0 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:5382: $? = 0 configure:5371: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -v >&5 ifort version 15.0.0 configure:5382: $? = 0 configure:5371: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 15.0.0.090 Build 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:5382: $? = 0 configure:5371: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' ifort: command line error: no files specified; for help type "ifort -help" configure:5382: $? = 1 configure:5391: checking whether we are using the GNU Fortran compiler configure:5404: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -c conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => choke me ---------------^ conftest.F(3): error #6218: This statement is positioned incorrectly and/or has syntax errors. choke me ---------------^ compilation aborted for conftest.F (code 1) configure:5404: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:5413: result: no configure:5419: checking whether /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 accepts -g configure:5430: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -c -g conftest.f >&5 configure:5430: $? = 0 configure:5438: result: yes configure:5471: checking for Fortran flag to compile .f90 files configure:5491: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -c conftest.f90 >&5 configure:5491: $? = 0 configure:5500: result: none configure:5635: checking for Fortran compiler version configure:5644: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 --version >&5 ifort (IFORT) 15.0.0 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:5655: $? = 0 configure:5644: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -v >&5 ifort version 15.0.0 configure:5655: $? = 0 configure:5644: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 15.0.0.090 Build 20140723 Copyright (C) 1985-2014 Intel Corporation. All rights reserved. configure:5655: $? = 0 configure:5644: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' ifort: command line error: no files specified; for help type "ifort -help" configure:5655: $? = 1 configure:5664: checking whether we are using the GNU Fortran compiler configure:5686: result: no configure:5692: checking whether /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 accepts -g configure:5711: result: yes configure:5740: checking what /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 does with modules configure:5793: checking how /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 finds modules configure:5805: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -Iconftestdir -c conftest.f90 1>&5 configure:5808: $? = 0 configure:5851: checking how to get verbose linking output from /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 configure:5861: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -c -I. conftest.f90 >&5 configure:5861: $? = 0 configure:5879: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -o conftest -I. -v conftest.f90 ifort version 15.0.0 /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64/fortcom -D__INTEL_COMPILER=1500 -D__INTEL_COMPILER_UPDATE=0 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D__amd64 -D__amd64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20140723 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I. -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/intel64 -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include/ -I/usr/include -O2 -simd -offload_host -mP1OPT_version=15.0-intel64 -mGLOB_diag_file=/tmp/ifortPpvgzn.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I. -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -o conftest -v -Wl,-rpath -Wl,/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -Wl,--enable-new-dtags -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/iforth2OmRjas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_em64t -mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort376879712HygPGC -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64/libiml_attr.so -mIPOPT_single_file_compile_and_link=TRUE -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_obj_output_file_name=/tmp/ifortPpvgzn.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchh0Eyag -mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileKc6mke -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortPpvgzn.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f90 -mP2OPT_symtab_type_copy=true conftest.f90 #include "..." search starts here: #include <...> search starts here: . . /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/intel64 /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include/ /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -o conftest /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/for_main.o -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortPpvgzn.o -rpath /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -Bdynamic -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:5962: result: -v configure:5964: checking for Fortran libraries of /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 configure:5987: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -o conftest -I. -v conftest.f90 ifort version 15.0.0 /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64/fortcom -D__INTEL_COMPILER=1500 -D__INTEL_COMPILER_UPDATE=0 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D__amd64 -D__amd64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20140723 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE2_MATH__ -D__SSE__ -D__SSE_MATH__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I. -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/intel64 -I/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include/ -I/usr/include -O2 -simd -offload_host -mP1OPT_version=15.0-intel64 -mGLOB_diag_file=/tmp/ifort7I9iTX.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I. -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include -I/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -o conftest -v -Wl,-rpath -Wl,/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -Wl,--enable-new-dtags -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortQq6sgWas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_em64t -mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mGLOB_opt_report_use_source_name -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort490544843QhjBG4 -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/bin/intel64/libiml_attr.so -mIPOPT_single_file_compile_and_link=TRUE -mPGOPTI_gen_threadsafe_level=0 -mIPOPT_obj_output_file_name=/tmp/ifort7I9iTX.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarch477HEU -mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileg6A3QT -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifort7I9iTX.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f90 -mP2OPT_symtab_type_copy=true conftest.f90 #include "..." search starts here: #include <...> search starts here: . . /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include/fftw /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/include /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/include /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/intel64 /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include/ /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -m elf_x86_64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -o conftest /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/for_main.o -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifort7I9iTX.o -rpath /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib --enable-new-dtags -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -Bdynamic -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:6183: result: -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl configure:6199: checking for dummy main to link with Fortran libraries configure:6233: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6233: $? = 0 configure:6278: result: none configure:6310: checking for Fortran name-mangling scheme configure:6323: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -c -I. conftest.f90 >&5 configure:6323: $? = 0 configure:6364: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c cfortran_test.o -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 /tmp/iccHG3gsK.o: In function `main': /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/conftest.c:30: undefined reference to `foobar' configure:6364: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:6364: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c cfortran_test.o -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6364: $? = 0 configure:6422: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc -o conftest -fPIC -wd1572 -g conftest.c cfortran_test.o -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl >&5 configure:6422: $? = 0 configure:6464: result: lower case, underscore, no extra underscore configure:6537: checking if Fortran compiler supports intrinsic SIZEOF configure:6552: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -o conftest -I. conftest.f90 >&5 configure:6552: $? = 0 configure:6552: ./conftest configure:6552: $? = 0 configure:6553: result: yes configure:6568: checking if Fortran default REAL is DOUBLE PRECISION configure:6601: /global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 -o conftest -I. conftest.f90 >&5 configure:6601: $? = 0 configure:6601: ./conftest configure:6601: $? = 0 configure:6602: result: no configure:6810: checking for C++ compiler version configure:6819: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-4) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6830: $? = 0 configure:6819: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-4) (GCC) configure:6830: $? = 0 configure:6819: g++ -V >&5 g++: '-V' option must have argument configure:6830: $? = 1 configure:6819: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:6830: $? = 1 configure:6834: checking whether we are using the GNU C++ compiler configure:6861: g++ -c conftest.cpp >&5 configure:6861: $? = 0 configure:6870: result: yes configure:6879: checking whether g++ accepts -g configure:6907: g++ -c -g conftest.cpp >&5 configure:6907: $? = 0 configure:6964: result: yes configure:6989: checking dependency style of g++ configure:7100: result: gcc3 configure:7120: checking how to run the C++ preprocessor configure:7147: g++ -E conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7147: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7147: g++ -E conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7147: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7147: /lib/cpp conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7147: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7147: /lib/cpp conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7147: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7186: result: /lib/cpp configure:7206: /lib/cpp conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7206: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7206: /lib/cpp conftest.cpp In file included from conftest.cpp:14: /global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/include/limits.h:36:54: error: missing binary operator before token "(" configure:7206: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #ifdef __STDC__ | # include | #else | # include | #endif | Syntax error configure:7236: error: in `/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1': configure:7238: error: C++ preprocessor "/lib/cpp" fails sanity check See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=' -fPIC -wd1572 -g ' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90 ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_fc_compiler_gnu=no ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fc_srcext_f90=none ac_cv_fortran_dummy_main=none ac_cv_host=x86_64-unknown-linux-gnu ac_cv_objext=o ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AWK=gawk ac_cv_prog_CXXCPP=/lib/cpp ac_cv_prog_ac_ct_CC=/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes hdf5_cv_host=x86_64-unknown-linux-gnu ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run aclocal-1.12' ADD_PARALLEL_FILES='' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS='' AM_CPPFLAGS='' AM_CXXFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='0' AM_FCFLAGS=' ' AM_LDFLAGS='' AM_MAKEFLAGS='' AM_V='$(V)' AR='' AS='' AUTOCONF='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoconf' AUTOHEADER='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoheader' AUTOMAKE='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run automake-1.12' AWK='gawk' BUILD_ALL_CONDITIONAL_FALSE='' BUILD_ALL_CONDITIONAL_TRUE='' BUILD_CXX_CONDITIONAL_FALSE='' BUILD_CXX_CONDITIONAL_TRUE='' BUILD_FORTRAN_CONDITIONAL_FALSE='' BUILD_FORTRAN_CONDITIONAL_TRUE='' BUILD_HDF5_HL_CONDITIONAL_FALSE='' BUILD_HDF5_HL_CONDITIONAL_TRUE='' BUILD_PARALLEL_CONDITIONAL_FALSE='' BUILD_PARALLEL_CONDITIONAL_TRUE='' BUILD_SHARED_SZIP_CONDITIONAL_FALSE='' BUILD_SHARED_SZIP_CONDITIONAL_TRUE='' BYTESEX='' CC='/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc' CCDEPMODE='depmode=gcc3' CC_VERSION='' CFLAGS=' -fPIC -wd1572 -g ' CLEARFILEBUF='' CODESTACK='no' CONFIG_DATE='' CONFIG_MODE='' CONFIG_USER='' CPP='' CPPFLAGS=' ' CXX='g++' CXXCPP='/lib/cpp' CXXDEPMODE='depmode=gcc3' CXXFLAGS=' ' CXX_SHARED_CONDITIONAL_FALSE='' CXX_SHARED_CONDITIONAL_TRUE='' CXX_VERSION='' CYGPATH_W='echo' DEBUG_PKG='' DEFAULT_API_VERSION='' DEFS='' DEPDIR='.deps' DEPRECATED_SYMBOLS='' DIRECT_VFD='no' DIRECT_VFD_CONDITIONAL_FALSE='' DIRECT_VFD_CONDITIONAL_TRUE='' DLLTOOL='' DSYMUTIL='' DUMPBIN='' DYNAMIC_DIRS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EXEEXT='' EXTERNAL_FILTERS='' F9XMODEXT='mod' F9XMODFLAG='-I' F9XSUFFIXFLAG='' FC2003='' FC='/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpif90' FCFLAGS='-I. ' FCFLAGS_f90='' FCLIBS=' -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64 -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/lapack/3.5.0-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/mkl/lib/intel64/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/netcdf/4.3.2-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/hdf5/1.8.13-intel-p/lib/ -L/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/lib/ -L/global/software/sl-6.x86_64/modules/langs/intel/2015.0.090/compiler/lib/intel64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpi_usempif08 -lmpi_usempi_ignore_tkr -lmpi_mpifh -lmpi -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lpthread -lirc_s -ldl' FC_VERSION='' FGREP='' FILTERS='' FORTRAN_2003_CONDITIONAL_F_FALSE='' FORTRAN_2003_CONDITIONAL_F_TRUE='#' FORTRAN_DEFAULT_REALisDBLE_F_FALSE='' FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#' FORTRAN_HAVE_SIZEOF_FALSE='#' FORTRAN_HAVE_SIZEOF_TRUE='' FORTRAN_SHARED_CONDITIONAL_FALSE='' FORTRAN_SHARED_CONDITIONAL_TRUE='' FSEARCH_DIRS='' GPFS='no' GREP='' H5_CFLAGS='-std=c99 ' H5_CPPFLAGS='' H5_CXXFLAGS='' H5_CXX_SHARED='' H5_FCFLAGS='' H5_FORTRAN_SHARED='' H5_LDFLAGS='' H5_LONE_COLON='' H5_VERSION='' HADDR_T='' HAVE_DMALLOC='no' HAVE_FORTRAN_2003='no' HDF5_HL='yes' HDF5_INTERFACES=' fortran' HDF_CXX='no' HDF_FORTRAN2003='no' HDF_FORTRAN='yes' HID_T='' HL='' HL_FOR='' HSIZE_T='' HSSIZE_T='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INSTRUMENT='' INSTRUMENT_LIBRARY='' LARGEFILE='yes' LD='' LDFLAGS=' ' LIBOBJS='' LIBS='' LIBTOOL='' LIPO='' LL_PATH='' LN_S='' LTLIBOBJS='' LT_STATIC_EXEC='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run makeinfo' MANIFEST_TOOL='' MKDIR_P='/bin/mkdir -p' MPE='no' MPI_GET_SIZE='' NM='' NMEDIT='' OBJDUMP='' OBJECT_NAMELEN_DEFAULT_F='' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='hdf5' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_NAME='HDF5' PACKAGE_STRING='HDF5 1.8.10-patch1' PACKAGE_TARNAME='hdf5' PACKAGE_URL='' PACKAGE_VERSION='1.8.10-patch1' PARALLEL='' PATH_SEPARATOR=':' PERL='' PTHREAD='' RANLIB='' ROOT='' RUNPARALLEL='' RUNSERIAL='' R_INTEGER='' R_LARGE='' SEARCH='' SED='' SETX='' SET_MAKE='' SHELL='/bin/sh' SIZE_T='' STATIC_EXEC='no' STATIC_SHARED='' STRICT_FORMAT_CHECKS='' STRIP='' TESTPARALLEL='' THREADSAFE='no' TIME='' TR='' TRACE_API='' UNAME_INFO='Linux n0004.scs00 2.6.32-431.29.2.el6.x86_64 #1 SMP Tue Sep 9 13:45:55 CDT 2014 x86_64 x86_64 x86_64 GNU/Linux' USE_FILTER_DEFLATE='' USE_FILTER_FLETCHER32='' USE_FILTER_NBIT='' USE_FILTER_SCALEOFFSET='' USE_FILTER_SHUFFLE='' USE_FILTER_SZIP='' USINGMEMCHECKER='' VERSION='1.8.10-patch1' WORDS_BIGENDIAN='' ac_ct_AR='' ac_ct_CC='/global/software/sl-6.x86_64/modules/intel/2015.0.090/openmpi/1.8.3-intel/bin/mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_shared='yes' enable_static='' exec_prefix='NONE' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/externalpackages/hdf5-1.8.10-patch1.1/bin/install-sh' libdir='/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/clusterfs/esd/esd2/gbisht/MODELS/petsc3.5.3/lrc-intel-2015-0-090-fort-debug' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HDF5" #define PACKAGE_TARNAME "hdf5" #define PACKAGE_VERSION "1.8.10-patch1" #define PACKAGE_STRING "HDF5 1.8.10-patch1" #define PACKAGE_BUGREPORT "help@hdfgroup.org" #define PACKAGE_URL "" #define PACKAGE "hdf5" #define VERSION "1.8.10-patch1" #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ configure: exit 1