<html><head><meta http-equiv="Content-Type" content="text/html charset=utf-8"></head><body style="word-wrap: break-word; -webkit-nbsp-mode: space; -webkit-line-break: after-white-space;" class="">My admin did an install of petsc on ubuntu 14.0 using the package manager. Things seem to be ok, expect I noticed the following when I compile using the petsc rules:<div class=""><br class=""></div><div class=""><div style="margin: 0px; font-family: Menlo;" class="">mpicxx -o ex19.o -c -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -fPIC -I/usr/lib/petscdir/3.4.2/include -I/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/include -I/usr/include -I/usr/include/suitesparse -I/usr/include/scotch -I/usr/lib/openmpi/include -I/usr/lib/openmpi/include/openmpi -D__INSDIR__= ex19.c</div><div style="margin: 0px; font-family: Menlo;" class="">/usr/bin/python: can't open file '/usr/lib/petscdir/3.4.2/bin/petscnagupgrade.py': [Errno 2] No such file or directory</div><div style="margin: 0px; font-family: Menlo;" class="">make: [chk_upgrade] Error 2 (ignored)</div><div style="margin: 0px; font-family: Menlo;" class="">mpicxx -Wl,--no-as-needed -Wall -Wwrite-strings -Wno-strict-aliasing -Wno-unknown-pragmas -O -o ex19 ex19.o -L/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/lib -L/usr/lib/petscdir/3.4.2/linux-gnu-c-opt/lib -lpetsc -L/usr/lib -ldmumps -lzmumps -lsmumps -lcmumps -lmumps_common -lpord -lscalapack-openmpi -lHYPRE_utilities -lHYPRE_struct_mv -lHYPRE_struct_ls -lHYPRE_sstruct_mv -lHYPRE_sstruct_ls -lHYPRE_IJ_mv -lHYPRE_parcsr_ls -lcholmod -lumfpack -lamd -llapack -lblas -lX11 -lpthread -lptesmumps -lptscotch -lptscotcherr -L/usr/lib/x86_64-linux-gnu -lfftw3 -lfftw3_mpi -lm -L/usr/lib/openmpi/lib -L/usr/lib/gcc/x86_64-linux-gnu/4.8 -L/lib/x86_64-linux-gnu -lmpi_f90 -lmpi_f77 -lgfortran -lm -lgfortran -lm -lquadmath -lm -lmpi_cxx -lstdc++ -ldl -lmpi -lhwloc -lgcc_s -lpthread -ldl </div><div style="margin: 0px; font-family: Menlo;" class="">/bin/rm -f -f ex19.o</div><div class=""><br class=""></div><div class="">I know the file is just a nag to upgrade petsc, but should I just continue to ignore it? Is there a reason it wasn’t installed by the package manager?</div><div class=""><br class=""><div class="">
<div class="">-gideon</div>
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