This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by HDF5 configure 1.8.10-patch1, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --prefix=/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg --libdir=/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/lib CC=mpicc CFLAGS= -fPIC -wd1572 -O3 -xhost --enable-parallel --enable-fortran FC=mpif90 F9X=mpif90 F90=mpif90 --enable-shared ## --------- ## ## Platform. ## ## --------- ## hostname = login1.stampede.tacc.utexas.edu uname -m = x86_64 uname -r = 2.6.32-431.17.1.el6.x86_64 uname -s = Linux uname -v = #1 SMP Wed May 7 23:32:49 UTC 2014 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /opt/apps/intel13/impi/4.1.3.049/intel64/bin PATH: /opt/apps/intel14/hdf5/1.8.13/x86_64/bin PATH: /opt/apps/intel/13/vtune_amplifier_xe_2013/bin64 PATH: /opt/apps/intel/13/composer_xe_2013_sp1.1.106/mpirt/bin/intel64 PATH: /opt/intel/sep/bin PATH: /work/01624/amesga/Software/libmesh/intel/3.4-impi-nblock/bin PATH: /opt/apps/python/epd/7.3.2 PATH: modules/bin PATH: /opt/apps/python/epd/7.3.2/bin PATH: /opt/apps/xalt/0.4.6/bin PATH: /usr/lib64/qt-3.3/bin PATH: /usr/local/bin PATH: /bin PATH: /usr/bin PATH: /usr/X11R6/bin PATH: /opt/ofed/bin PATH: /opt/ofed/sbin PATH: . PATH: /opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 PATH: /opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64_mic PATH: /opt/apps/intel/13/composer_xe_2013_sp1.1.106/debugger/gui/intel64 ## ----------- ## ## Core tests. ## ## ----------- ## configure:3252: checking for a BSD-compatible install configure:3320: result: /usr/bin/install -c configure:3331: checking whether build environment is sane configure:3386: result: yes configure:3537: checking for a thread-safe mkdir -p configure:3576: result: /bin/mkdir -p configure:3583: checking for gawk configure:3599: found /bin/gawk configure:3610: result: gawk configure:3621: checking whether make sets $(MAKE) configure:3643: result: yes configure:3740: checking whether make supports nested variables configure:3757: result: yes configure:3780: checking whether to enable maintainer-specific portions of Makefiles configure:3789: result: no configure:3833: checking build system type configure:3847: result: x86_64-unknown-linux-gnu configure:3867: checking host system type configure:3880: result: x86_64-unknown-linux-gnu configure:3954: checking shell variables initial values ACLOCAL='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run aclocal-1.12' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS= AM_CPPFLAGS= AM_CXXFLAGS= AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY=0 AM_FCFLAGS= AM_LDFLAGS= AM_V='$(V)' APPS=/opt/apps ARCHIVE=/home/01624/amesga ARCHIVER=ranch.tacc.utexas.edu ARMCI_OPENIB_DEVICE=mlx4_0 AUTOCONF='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoconf' AUTOHEADER='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoheader' AUTOMAKE='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run automake-1.12' AWK=gawk BASH=/bin/sh BASHOPTS=cmdhist:extquote:force_fignore:hostcomplete:interactive_comments:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=([0]="10") BASH_ARGV=([0]="--enable-shared" [1]="F90=mpif90" [2]="F9X=mpif90" [3]="FC=mpif90" [4]="--enable-fortran" [5]="--enable-parallel" [6]="CFLAGS= -fPIC -wd1572 -O3 -xhost " [7]="CC=mpicc" [8]="--libdir=/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/lib" [9]="--prefix=/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg") BASH_CMDS=() BASH_LINENO=([0]="0") BASH_SOURCE=([0]="./configure") BASH_VERSINFO=([0]="4" [1]="2" [2]="50" [3]="1" [4]="release" [5]="x86_64-unknown-linux-gnu") BASH_VERSION='4.2.50(1)-release' BOOST_INCLUDE=/opt/apps/intel13/boost/1.51.0/include CC=mpicc CFLAGS=' -fPIC -wd1572 -O3 -xhost ' COLUMNS=115 CPPFLAGS= CRUNCH_DIR=/work/01624/amesga/Crunch CVS_RSH=ssh CXXFLAGS= CYGPATH_W=echo DEFAULT_LIBS= DIRSTACK=() DUALCASE=1 ECHO_C= ECHO_N=-n ECHO_T= ELASTICITYUTILS_DIR=/work/01624/amesga/Code/elasticityutils ELASTICITY_SCRIPT_DIR=/work/01624/amesga/Code/elasticityutils EUID=809148 F90=mpif90 F9X=mpif90 FC=mpif90 FCFLAGS= GROUPS=() G_BROKEN_FILENAMES=1 HISTSIZE=1000 HOME=/home1/01624/amesga HOSTNAME=login1.stampede.tacc.utexas.edu HOSTTYPE=x86_64 ICC_BIN=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 ICC_LIB=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 IFC_BIN=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 IFC_LIB=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 IFS=' ' IIDB_BIN=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 INCLUDE=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp/include:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/include INPUTRC=/etc/inputrc INSTALL='/usr/bin/install -c' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' IPPROOT=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp I_MPI_CC=icc I_MPI_CXX=icpc I_MPI_DAPL_PROVIDER=ofa-v2-mlx4_0-1u I_MPI_F90=ifort I_MPI_OFA_ADAPTER_NAME=mlx4_0 I_MPI_ROOT=/opt/apps/intel13/impi/4.1.3.049 LANG=en_US.UTF-8 LANGUAGE=C LC_ALL=C LC_CTYPE=en_US.UTF-8 LDFLAGS= LD_LIBRARY_PATH=/opt/apps/intel14/boost/1.51.0/lib:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64:/opt/intel/mic/coi/host-linux-release/lib:/opt/intel/mic/myo/lib:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mpirt/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp/../compiler/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/ipp/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/intel64:/opt/apps/python/epd/7.3.2/lib LESSOPEN='||/usr/bin/lesspipe.sh %s' LIBMESH_DIR=/work/01624/amesga/Software/libmesh/intel/3.4-impi-nblock LIBOBJS= LINENO=3954 LINES=61 LMOD_CMD=/opt/apps/lmod/lmod/libexec/lmod LMOD_COLORIZE=yes LMOD_DEFAULT_MODULEPATH=/opt/apps/xsede/modulefiles:/opt/apps/modulefiles:/opt/modulefiles LMOD_DIR=/opt/apps/lmod/lmod/libexec LMOD_FAMILY_COMPILER=intel LMOD_FAMILY_HDF5=hdf5 LMOD_FAMILY_MPI=impi LMOD_FULL_SETTARG_SUPPORT=no LMOD_PKG=/opt/apps/lmod/lmod LMOD_PREPEND_BLOCK=normal LMOD_SETTARG_CMD=: LMOD_SYSTEM_DEFAULT_MODULES=TACC LOADEDMODULES=TACC-paths:Linux:cluster-paths:xalt/0.4.6:cluster:TACC:python/2.7.3-epd-7.3.2:intel/14.0.1.106:boost/1.51.0:hdf5/1.8.13:impi/4.1.3.049 LOGNAME=amesga LS_COLORS='rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=01;05;37;41:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arj=01;31:*.taz=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lz=01;31:*.xz=01;31:*.bz2=01;31:*.tbz=01;31:*.tbz2=01;31:*.bz=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.rar=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.jpg=01;35:*.jpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.axv=01;35:*.anx=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=01;36:*.au=01;36:*.flac=01;36:*.mid=01;36:*.midi=01;36:*.mka=01;36:*.mp3=01;36:*.mpc=01;36:*.ogg=01;36:*.ra=01;36:*.wav=01;36:*.axa=01;36:*.oga=01;36:*.spx=01;36:*.xspf=01;36:' MACHTYPE=x86_64-unknown-linux-gnu MAINT='#' MAINTAINER_MODE_FALSE= MAINTAINER_MODE_TRUE='#' MAKEFLAGS= MAKEINFO='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run makeinfo' MANPATH=/opt/apps/intel13/impi/4.1.3.049/man:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/man/en_US:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/man/en_US:/opt/apps/intel/13/vtune_amplifier_xe_2013/man:/opt/apps/python/epd/7.3.2/share/man:/usr/local/man:/usr/share/man:/usr/X11R6/man:/usr/kerberos/man:/usr/man:/usr/local/man MEF90_DIR=/work/01624/amesga/Code/mef90-sieve MFLAGS= MIC_ENV_PREFIX=MIC MIC_I_MPI_DAPL_PROVIDER=ofa-v2-mlx4_0-1u MIC_I_MPI_OFA_ADAPTER_NAME=mlx4_0 MIC_LD_LIBRARY_PATH=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/mic:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/mic:/opt/intel/mic/coi/device-linux-release/lib:/opt/intel/mic/myo/lib:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb/lib/mic:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/mic MISSING='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing' MKDIR_P='/bin/mkdir -p' MKLROOT=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl MODULEPATH=/opt/apps/intel13/impi_4_1/modulefiles:/opt/apps/intel14/modulefiles:/opt/apps/python2_7_3/modulefiles:/opt/apps/xsede/modulefiles:/opt/apps/modulefiles:/opt/modulefiles MODULESHOME=/opt/apps/lmod/lmod MPICH_HOME=/opt/apps/intel13/impi/4.1.3.049 MV2_IBA_HCA=mlx4_0 OMP_NUM_THREADS=1 OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PACKAGE=hdf5 PACKAGE_BUGREPORT=help@hdfgroup.org PACKAGE_NAME=HDF5 PACKAGE_STRING='HDF5 1.8.10-patch1' PACKAGE_TARNAME=hdf5 PACKAGE_URL= PACKAGE_VERSION=1.8.10-patch1 PATH=/opt/apps/intel13/impi/4.1.3.049/intel64/bin:/opt/apps/intel14/hdf5/1.8.13/x86_64/bin:/opt/apps/intel/13/vtune_amplifier_xe_2013/bin64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mpirt/bin/intel64:/opt/intel/sep/bin:/work/01624/amesga/Software/libmesh/intel/3.4-impi-nblock/bin:/opt/apps/python/epd/7.3.2:modules/bin:/opt/apps/python/epd/7.3.2/bin:/opt/apps/xalt/0.4.6/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/bin:/usr/bin:/usr/X11R6/bin:/opt/ofed/bin:/opt/ofed/sbin:.:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64_mic:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/debugger/gui/intel64 PATH_SEPARATOR=: PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=26110 PS1='$ ' PS2='> ' PS4='+ ' PWD=/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1 PYTHONHOME=/opt/apps/python/epd/7.3.2 PYTHONPATH=/opt/apps/python/epd/7.3.2/modules/lib/python:/opt/apps/python/epd/7.3.2/lib:/work/01624/amesga/Code/scripts/:/work/01624/amesga/Code/indentation-utils:/work/01624/amesga/Code/mef90-sieve/python:/work/01624/amesga/Code QTDIR=/usr/lib64/qt-3.3 QTINC=/usr/lib64/qt-3.3/include QTLIB=/usr/lib64/qt-3.3/lib ROCKSMECHANICS_DIR=/work/01624/amesga/Code/scripts SCRATCH=/scratch/01624/amesga SET_MAKE= SHELL=/bin/sh SHELLOPTS=braceexpand:hashall:interactive-comments:posix SHLVL=3 SINK_LD_LIBRARY_PATH=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/mic:/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/mic SSH_AUTH_SOCK=/tmp/ssh-F9yjihJRub/agent.41554 SSH_CLIENT='130.39.95.211 49851 22' SSH_CONNECTION='130.39.95.211 49851 129.114.62.11 22' SSH_TTY=/dev/pts/134 STOCKYARD=/work/01624/amesga SYSTEM=linux TACC_BOOST_DIR=/opt/apps/intel14/boost/1.51.0 TACC_BOOST_INC=/opt/apps/intel14/boost/1.51.0/include TACC_BOOST_LIB=/opt/apps/intel14/boost/1.51.0/lib TACC_DOMAIN=stampede TACC_FAMILY_COMPILER=intel TACC_FAMILY_HDF5=hdf5 TACC_FAMILY_MPI=impi TACC_HDF5_BIN=/opt/apps/intel14/hdf5/1.8.13/x86_64/bin TACC_HDF5_DIR=/opt/apps/intel14/hdf5/1.8.13/x86_64 TACC_HDF5_DOC=/opt/apps/intel14/hdf5/1.8.13/x86_64/doc TACC_HDF5_INC=/opt/apps/intel14/hdf5/1.8.13/x86_64/include TACC_HDF5_LIB=/opt/apps/intel14/hdf5/1.8.13/x86_64/lib TACC_ICC_DIR=/opt/apps/intel/13/composer_xe_2013_sp1.1.106 TACC_IMPI_LIB=/opt/apps/intel13/impi/4.1.3.049/intel64/lib TACC_MKL_DIR=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl TACC_MKL_INC=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/include TACC_MKL_LIB=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/mkl/lib/intel64 TACC_MPI_GETMODE=impi_hydra TACC_PUBLIC_MACHINE=1 TACC_PYTHON_BIN=/opt/apps/python/epd/7.3.2/bin:/opt/apps/python/epd/7.3.2:modules/bin TACC_PYTHON_DIR=/opt/apps/python/epd/7.3.2 TACC_PYTHON_LIB=/opt/apps/python/epd/7.3.2/lib TACC_SYSTEM=stampede TACC_XALT_BIN=/opt/apps/xalt/0.4.6/bin TACC_XALT_DIR=/opt/apps/xalt/0.4.6/ TBBROOT=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/tbb TERM=ansi UID=809148 USER=amesga USE_MAINTAINER_MODE=no VERSION=1.8.10-patch1 VFMFE_DIR=/work/01624/amesga/Code/vfmfe VFMFE_EXECFILE=vfmfe WORK=/work/01624/amesga _='checking shell variables initial values... ' _LMFILES_=/opt/modulefiles/TACC-paths:/opt/modulefiles/Linux:/opt/modulefiles/cluster-paths:/opt/apps/modulefiles/xalt/0.4.6.lua:/opt/modulefiles/cluster:/opt/modulefiles/TACC:/opt/apps/modulefiles/python/2.7.3-epd-7.3.2:/opt/apps/modulefiles/intel/14.0.1.106:/opt/apps/intel14/modulefiles/boost/1.51.0.lua:/opt/apps/intel14/modulefiles/hdf5/1.8.13.lua:/opt/apps/intel14/modulefiles/impi/4.1.3.049 _ModuleTable001_=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All rights reserved. configure:4494: $? = 0 configure:4483: mpicc -v >&5 mpicc for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2014, Intel Corporation. All rights reserved. icc version 14.0.1 (gcc version 4.4.7 compatibility) configure:4494: $? = 0 configure:4483: mpicc -V >&5 Intel(R) C Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 14.0.1.106 Build 20131008 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:4494: $? = 0 configure:4483: mpicc -qversion >&5 icc: command line warning #10006: ignoring unknown option '-qversion' /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o: In function `_start': (.text+0x20): undefined reference to `main' /usr/bin/ld: link errors found, deleting executable `a.out' configure:4494: $? = 1 configure:4514: checking whether the C compiler works configure:4536: mpicc -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4540: $? = 0 configure:4588: result: yes configure:4591: checking for C compiler default output file name configure:4593: result: a.out configure:4599: checking for suffix of executables configure:4606: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4610: $? = 0 configure:4632: result: configure:4654: checking whether we are cross compiling configure:4662: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4666: $? = 0 configure:4673: ./conftest configure:4677: $? = 0 configure:4692: result: no configure:4697: checking for suffix of object files configure:4719: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4723: $? = 0 configure:4744: result: o configure:4748: checking whether we are using the GNU C compiler configure:4767: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4767: $? = 0 configure:4776: result: yes configure:4785: checking whether mpicc accepts -g configure:4805: mpicc -c -g conftest.c >&5 configure:4805: $? = 0 configure:4846: result: yes configure:4863: checking for mpicc option to accept ISO C89 configure:4926: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:4926: $? = 0 configure:4939: result: none needed configure:4970: checking for style of include used by make configure:4998: result: GNU configure:5024: checking dependency style of mpicc configure:5135: result: gcc3 configure:5157: checking if unsupported combinations of configure options are allowed configure:5167: result: no configure:5182: checking if Fortran interface enabled configure:5200: checking if Fortran 2003 interface enabled configure:5362: checking for Fortran compiler version configure:5371: mpif90 --version >&5 ifort (IFORT) 14.0.1 20131008 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:5382: $? = 0 configure:5371: mpif90 -v >&5 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2014, Intel Corporation. All rights reserved. ifort version 14.0.1 configure:5382: $? = 0 configure:5371: mpif90 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 14.0.1.106 Build 20131008 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:5382: $? = 0 configure:5371: mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-14_0/20131009_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x42): undefined reference to `MAIN__' /usr/bin/ld: link errors found, deleting executable `a.out' configure:5382: $? = 1 configure:5391: checking whether we are using the GNU Fortran compiler configure:5404: mpif90 -c conftest.F >&5 conftest.F(3): error #5082: Syntax error, found END-OF-STATEMENT when expecting one of: ( % [ : . = => choke me ---------------^ conftest.F(3): error #6218: This statement is positioned incorrectly and/or has syntax errors. choke me ---------------^ compilation aborted for conftest.F (code 1) configure:5404: $? = 1 configure: failed program was: | program main | #ifndef __GNUC__ | choke me | #endif | | end configure:5413: result: no configure:5419: checking whether mpif90 accepts -g configure:5430: mpif90 -c -g conftest.f >&5 configure:5430: $? = 0 configure:5438: result: yes configure:5471: checking for Fortran flag to compile .f90 files configure:5491: mpif90 -c conftest.f90 >&5 configure:5491: $? = 0 configure:5500: result: none configure:5635: checking for Fortran compiler version configure:5644: mpif90 --version >&5 ifort (IFORT) 14.0.1 20131008 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:5655: $? = 0 configure:5644: mpif90 -v >&5 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2014, Intel Corporation. All rights reserved. ifort version 14.0.1 configure:5655: $? = 0 configure:5644: mpif90 -V >&5 Intel(R) Fortran Intel(R) 64 Compiler XE for applications running on Intel(R) 64, Version 14.0.1.106 Build 20131008 Copyright (C) 1985-2013 Intel Corporation. All rights reserved. configure:5655: $? = 0 configure:5644: mpif90 -qversion >&5 ifort: command line warning #10006: ignoring unknown option '-qversion' /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64/for_main.o: In function `main': /export/users/nbtester/efi2linux_nightly/branch-14_0/20131009_000000/libdev/frtl/src/libfor/for_main.c:(.text+0x42): undefined reference to `MAIN__' /usr/bin/ld: link errors found, deleting executable `a.out' configure:5655: $? = 1 configure:5664: checking whether we are using the GNU Fortran compiler configure:5686: result: no configure:5692: checking whether mpif90 accepts -g configure:5711: result: yes configure:5740: checking what mpif90 does with modules configure:5793: checking how mpif90 finds modules configure:5805: mpif90 -Iconftestdir -c conftest.f90 1>&5 configure:5808: $? = 0 configure:5851: checking how to get verbose linking output from mpif90 configure:5861: mpif90 -c -I. conftest.f90 >&5 configure:5861: $? = 0 configure:5879: mpif90 -o conftest -I. -v conftest.f90 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2014, Intel Corporation. All rights reserved. ifort version 14.0.1 /opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64/fortcom -D__INTEL_COMPILER=1400 -D__INTEL_COMPILER_UPDATE=1 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20131008 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I. -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include/intel64 -I/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=14.0-intel64 -mGLOB_diag_file=/tmp/ifortTPyTWJ.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I. -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -o conftest -v -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /opt/apps/intel13/impi/4.1.3.049/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifortpHranIas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_em64t -mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort13936178371biZzL -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifortTPyTWJ.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarchiWslZH -mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfilezYmmBH -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortTPyTWJ.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f90 -mP2OPT_symtab_type_copy=true conftest.f90 #include "..." search starts here: #include <...> search starts here: . . /opt/apps/intel13/impi/4.1.3.049/intel64/include /opt/apps/intel13/impi/4.1.3.049/intel64/include /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include/intel64 /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -o conftest /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64/for_main.o -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortTPyTWJ.o --enable-new-dtags -rpath /opt/apps/intel13/impi/4.1.3.049/intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:5962: result: -v configure:5964: checking for Fortran libraries of mpif90 configure:5987: mpif90 -o conftest -I. -v conftest.f90 mpif90 for the Intel(R) MPI Library 4.1 for Linux* Copyright(C) 2003-2014, Intel Corporation. All rights reserved. ifort version 14.0.1 /opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64/fortcom -D__INTEL_COMPILER=1400 -D__INTEL_COMPILER_UPDATE=1 -D__unix__ -D__unix -D__linux__ -D__linux -D__gnu_linux__ -Dunix -Dlinux -D__ELF__ -D__x86_64 -D__x86_64__ -D_MT -D__INTEL_COMPILER_BUILD_DATE=20131008 -D__INTEL_OFFLOAD -D__i686 -D__i686__ -D__pentiumpro -D__pentiumpro__ -D__pentium4 -D__pentium4__ -D__tune_pentium4__ -D__SSE2__ -D__SSE__ -D__MMX__ -mGLOB_pack_sort_init_list -I. -I. -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include/intel64 -I/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include -I/usr/local/include -I/usr/lib/gcc/x86_64-redhat-linux/4.4.7/include -I/usr/include -O2 -simd -offload_host -mP1OPT_version=14.0-intel64 -mGLOB_diag_file=/tmp/ifortpHhC6e.diag -mGLOB_source_language=GLOB_SOURCE_LANGUAGE_F90 -mP2OPT_static_promotion -mP1OPT_print_version=FALSE -mCG_use_gas_got_workaround=F -mP2OPT_align_option_used=TRUE -mGLOB_gcc_version=447 "-mGLOB_options_string=-I. -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -I/opt/apps/intel13/impi/4.1.3.049/intel64/include -o conftest -v -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -Xlinker --enable-new-dtags -Xlinker -rpath -Xlinker /opt/apps/intel13/impi/4.1.3.049/intel64/lib -Xlinker -rpath -Xlinker /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread" -mGLOB_cxx_limited_range=FALSE -mCG_extend_parms=FALSE -mGLOB_compiler_bin_directory=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64 -mGLOB_as_output_backup_file_name=/tmp/ifort6t0E4Aas_.s -mIPOPT_activate -mIPOPT_lite -mGLOB_em64t -mGLOB_instruction_tuning=0x0 -mGLOB_product_id_code=0x22006d8f -mCG_bnl_movbe=T -mGLOB_extended_instructions=0x8 -mP3OPT_use_mspp_call_convention -mP2OPT_subs_out_of_bound=FALSE -mGLOB_ansi_alias -mPGOPTI_value_profile_use=T -mP2OPT_il0_array_sections=TRUE -mGLOB_offload_mode=1 -mP2OPT_offload_unique_var_string=ifort109120114we9oeT -mP2OPT_hlo_level=2 -mP2OPT_hlo -mP2OPT_hpo_rtt_control=0 -mIPOPT_args_in_regs=0 -mP2OPT_disam_assume_nonstd_intent_in=FALSE -mGLOB_imf_mapping_library=/opt/apps/intel/13/composer_xe_2013_sp1.1.106/bin/intel64/libiml_attr.so -mIPOPT_obj_output_file_name=/tmp/ifortpHhC6e.o -mIPOPT_whole_archive_fixup_file_name=/tmp/ifortwarch6MsoAG -mGLOB_linker_version=2.20.51.0.2 -mGLOB_long_size_64 -mGLOB_routine_pointer_size_64 -mGLOB_driver_tempfile_name=/tmp/iforttempfileErhf8R -mP3OPT_asm_target=P3OPT_ASM_TARGET_GAS -mGLOB_async_unwind_tables=TRUE -mGLOB_obj_output_file=/tmp/ifortpHhC6e.o -mGLOB_source_dialect=GLOB_SOURCE_DIALECT_FORTRAN -mP1OPT_source_file_name=conftest.f90 -mP2OPT_symtab_type_copy=true conftest.f90 #include "..." search starts here: #include <...> search starts here: . . /opt/apps/intel13/impi/4.1.3.049/intel64/include /opt/apps/intel13/impi/4.1.3.049/intel64/include /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include/intel64 /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/include /usr/local/include /usr/lib/gcc/x86_64-redhat-linux/4.4.7/include /usr/include End of search list. ld /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crt1.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crti.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtbegin.o --eh-frame-hdr --build-id -dynamic-linker /lib64/ld-linux-x86-64.so.2 -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -o conftest /opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64/for_main.o -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib /tmp/ifortpHhC6e.o --enable-new-dtags -rpath /opt/apps/intel13/impi/4.1.3.049/intel64/lib -rpath /opt/intel/mpi-rt/4.1 -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -Bstatic -lifport -lifcore -limf -lsvml -Bdynamic -lm -Bstatic -lipgo -lirc -Bdynamic -lpthread -Bstatic -lsvml -Bdynamic -lc -lgcc -lgcc_s -Bstatic -lirc_s -Bdynamic -ldl -lc /usr/lib/gcc/x86_64-redhat-linux/4.4.7/crtend.o /usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/crtn.o configure:6183: result: -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s configure:6199: checking for dummy main to link with Fortran libraries configure:6233: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:6233: $? = 0 configure:6278: result: none configure:6310: checking for Fortran name-mangling scheme configure:6323: mpif90 -c -I. conftest.f90 >&5 configure:6323: $? = 0 configure:6364: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c cfortran_test.o -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 /tmp/iccEDj4Cz.o: In function `main': conftest.c:(.text+0x37): undefined reference to `foobar' /usr/bin/ld: link errors found, deleting executable `conftest' configure:6364: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char foobar (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return foobar (); | ; | return 0; | } configure:6364: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c cfortran_test.o -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:6364: $? = 0 configure:6422: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c cfortran_test.o -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s >&5 configure:6422: $? = 0 configure:6464: result: lower case, underscore, no extra underscore configure:6537: checking if Fortran compiler supports intrinsic SIZEOF configure:6552: mpif90 -o conftest -I. conftest.f90 >&5 configure:6552: $? = 0 configure:6552: ./conftest configure:6552: $? = 0 configure:6553: result: yes configure:6568: checking if Fortran default REAL is DOUBLE PRECISION configure:6601: mpif90 -o conftest -I. conftest.f90 >&5 configure:6601: $? = 0 configure:6601: ./conftest configure:6601: $? = 0 configure:6602: result: no configure:6810: checking for C++ compiler version configure:6819: g++ --version >&5 g++ (GCC) 4.4.7 20120313 (Red Hat 4.4.7-11) Copyright (C) 2010 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6830: $? = 0 configure:6819: g++ -v >&5 Using built-in specs. Target: x86_64-redhat-linux Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk --disable-dssi --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-1.5.0.0/jre --enable-libgcj-multifile --enable-java-maintainer-mode --with-ecj-jar=/usr/share/java/eclipse-ecj.jar --disable-libjava-multilib --with-ppl --with-cloog --with-tune=generic --with-arch_32=i686 --build=x86_64-redhat-linux Thread model: posix gcc version 4.4.7 20120313 (Red Hat 4.4.7-11) (GCC) configure:6830: $? = 0 configure:6819: g++ -V >&5 g++: '-V' option must have argument configure:6830: $? = 1 configure:6819: g++ -qversion >&5 g++: unrecognized option '-qversion' g++: no input files configure:6830: $? = 1 configure:6834: checking whether we are using the GNU C++ compiler configure:6861: g++ -c conftest.cpp >&5 configure:6861: $? = 0 configure:6870: result: yes configure:6879: checking whether g++ accepts -g configure:6907: g++ -c -g conftest.cpp >&5 configure:6907: $? = 0 configure:6964: result: yes configure:6989: checking dependency style of g++ configure:7100: result: gcc3 configure:7120: checking how to run the C++ preprocessor configure:7147: g++ -E conftest.cpp configure:7147: $? = 0 configure:7161: g++ -E conftest.cpp conftest.cpp:13:28: error: ac_nonexistent.h: No such file or directory configure:7161: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #include configure:7186: result: g++ -E configure:7206: g++ -E conftest.cpp configure:7206: $? = 0 configure:7220: g++ -E conftest.cpp conftest.cpp:13:28: error: ac_nonexistent.h: No such file or directory configure:7220: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #include configure:7249: checking if c++ interface enabled configure:7516: checking for perl configure:7532: found /usr/bin/perl configure:7543: result: perl configure:7567: checking for ar configure:7583: found /usr/bin/ar configure:7594: result: ar configure:7613: checking whether make sets $(MAKE) configure:7635: result: yes configure:7652: checking for tr configure:7670: found /usr/bin/tr configure:7682: result: /usr/bin/tr configure:7701: checking if srcdir= and time commands work together configure:7709: result: yes configure:7771: checking for mpiexec configure:7788: result: /opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpiexec configure:7833: checking for mpiexec configure:7850: result: /opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpiexec configure:7906: checking if shared Fortran libraries are supported configure:7940: result: yes configure:8404: checking how to print strings configure:8431: result: printf configure:8452: checking for a sed that does not truncate output configure:8516: result: /bin/sed configure:8534: checking for grep that handles long lines and -e configure:8592: result: /bin/grep configure:8597: checking for egrep configure:8659: result: /bin/grep -E configure:8664: checking for fgrep configure:8726: result: /bin/grep -F configure:8761: checking for ld used by mpicc configure:8828: result: /opt/apps/xalt/0.4.6/bin/ld configure:8835: checking if the linker (/opt/apps/xalt/0.4.6/bin/ld) is GNU ld configure:8850: result: yes configure:8862: checking for BSD- or MS-compatible name lister (nm) configure:8911: result: /usr/bin/nm -B configure:9041: checking the name lister (/usr/bin/nm -B) interface configure:9048: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:9051: /usr/bin/nm -B "conftest.o" configure:9054: output 0000000000000000 B some_variable configure:9061: result: BSD nm configure:9064: checking whether ln -s works configure:9068: result: yes configure:9076: checking the maximum length of command line arguments configure:9206: result: 3458764513820540925 configure:9223: checking whether the shell understands some XSI constructs configure:9233: result: yes configure:9237: checking whether the shell understands "+=" configure:9243: result: yes configure:9278: checking how to convert x86_64-unknown-linux-gnu file names to x86_64-unknown-linux-gnu format configure:9318: result: func_convert_file_noop configure:9325: checking how to convert x86_64-unknown-linux-gnu file names to toolchain format configure:9345: result: func_convert_file_noop configure:9352: checking for /opt/apps/xalt/0.4.6/bin/ld option to reload object files configure:9359: result: -r configure:9433: checking for objdump configure:9460: result: objdump configure:9489: checking how to recognize dependent libraries configure:9691: result: pass_all configure:9776: checking for dlltool configure:9803: result: dlltool configure:9833: checking how to associate runtime and link libraries configure:9860: result: printf %s\n configure:9984: checking for archiver @FILE support configure:10009: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:10009: $? = 0 configure:10012: ar cru libconftest.a @conftest.lst >&5 configure:10015: $? = 0 configure:10020: ar cru libconftest.a @conftest.lst >&5 ar: conftest.o: No such file or directory configure:10023: $? = 1 configure:10035: result: @ configure:10093: checking for strip configure:10109: found /usr/bin/strip configure:10120: result: strip configure:10192: checking for ranlib configure:10208: found /usr/bin/ranlib configure:10219: result: ranlib configure:10321: checking command to parse /usr/bin/nm -B output from mpicc object configure:10441: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:10444: $? = 0 configure:10448: /usr/bin/nm -B conftest.o \| sed -n -e 's/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm configure:10451: $? = 0 configure:10517: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c conftstm.o >&5 configure:10520: $? = 0 configure:10558: result: ok configure:10595: checking for sysroot configure:10625: result: no configure:10702: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:10705: $? = 0 configure:10889: checking for mt configure:10919: result: no configure:10939: checking if : is a manifest tool configure:10945: : '-?' configure:10953: result: no configure:11603: checking how to run the C preprocessor configure:11634: mpicc -E conftest.c configure:11634: $? = 0 configure:11648: mpicc -E conftest.c conftest.c(13): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:11648: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #include configure:11673: result: mpicc -E configure:11693: mpicc -E conftest.c configure:11693: $? = 0 configure:11707: mpicc -E conftest.c conftest.c(13): error #2379: cannot open source file "ac_nonexistent.h" #include ^ configure:11707: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | /* end confdefs.h. */ | #include configure:11736: checking for ANSI C header files configure:11764: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11764: $? = 0 configure:11837: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11837: $? = 0 configure:11837: ./conftest configure:11837: $? = 0 configure:11848: result: yes configure:11861: checking for sys/types.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for sys/stat.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for stdlib.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for string.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for memory.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for strings.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for inttypes.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for stdint.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11861: checking for unistd.h configure:11861: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11861: $? = 0 configure:11861: result: yes configure:11875: checking for dlfcn.h configure:11875: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:11875: $? = 0 configure:11875: result: yes configure:12088: checking for objdir configure:12103: result: .libs configure:12370: checking if mpicc supports -fno-rtti -fno-exceptions configure:12388: mpicc -c -fPIC -wd1572 -O3 -xhost -fno-rtti -fno-exceptions conftest.c >&5 configure:12392: $? = 0 configure:12405: result: yes configure:12732: checking for mpicc option to produce PIC configure:12739: result: -fPIC -DPIC configure:12747: checking if mpicc PIC flag -fPIC -DPIC works configure:12765: mpicc -c -fPIC -wd1572 -O3 -xhost -fPIC -DPIC -DPIC conftest.c >&5 configure:12769: $? = 0 configure:12782: result: yes configure:12811: checking if mpicc static flag -static works configure:12839: result: no configure:12854: checking if mpicc supports -c -o file.o configure:12875: mpicc -c -fPIC -wd1572 -O3 -xhost -o out/conftest2.o conftest.c >&5 configure:12879: $? = 0 configure:12901: result: yes configure:12909: checking if mpicc supports -c -o file.o configure:12956: result: yes configure:12989: checking whether the mpicc linker (/opt/apps/xalt/0.4.6/bin/ld -m elf_x86_64) supports shared libraries configure:14158: result: yes configure:14195: checking whether -lc should be explicitly linked in configure:14203: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:14206: $? = 0 configure:14221: mpicc -shared -fPIC -DPIC conftest.o -v -Wl,-soname -Wl,conftest -o conftest 2\>\&1 \| /bin/grep -lc \>/dev/null 2\>\&1 configure:14224: $? = 0 configure:14238: result: no configure:14398: checking dynamic linker characteristics configure:14917: mpicc -o conftest -fPIC -wd1572 -O3 -xhost -Wl,-rpath -Wl,/foo conftest.c >&5 configure:14917: $? = 0 configure:15139: result: GNU/Linux ld.so configure:15246: checking how to hardcode library paths into programs configure:15271: result: immediate configure:15373: checking for shl_load configure:15373: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c >&5 /tmp/iccZvIIlX.o: In function `main': conftest.c:(.text+0x37): undefined reference to `shl_load' /usr/bin/ld: link errors found, deleting executable `conftest' configure:15373: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | /* Define shl_load to an innocuous variant, in case declares shl_load. | For example, HP-UX 11i declares gettimeofday. */ | #define shl_load innocuous_shl_load | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char shl_load (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef shl_load | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char shl_load (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_shl_load || defined __stub___shl_load | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return shl_load (); | ; | return 0; | } configure:15373: result: no configure:15377: checking for shl_load in -ldld configure:15410: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -ldld >&5 /usr/bin/ld: cannot find -ldld configure:15410: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char shl_load (); | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return shl_load (); | ; | return 0; | } configure:15419: result: no configure:15424: checking for dlopen configure:15424: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:15424: $? = 0 configure:15424: result: yes configure:15605: checking whether a program can dlopen itself configure:15685: mpicc -o conftest -fPIC -wd1572 -O3 -xhost -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c >&5 configure:15688: $? = 0 configure:15706: result: yes configure:15711: checking whether a statically linked program can dlopen itself configure:15791: mpicc -o conftest -fPIC -wd1572 -O3 -xhost -DHAVE_DLFCN_H -Wl,--export-dynamic conftest.c >&5 configure:15794: $? = 0 configure:15812: result: yes configure:15851: checking whether stripping libraries is possible configure:15856: result: yes configure:15891: checking if libtool supports shared libraries configure:15893: result: yes configure:15896: checking whether to build shared libraries configure:15917: result: yes configure:15920: checking whether to build static libraries configure:15924: result: yes configure:19265: checking if libtool supports shared libraries configure:19267: result: yes configure:19270: checking whether to build shared libraries configure:19290: result: yes configure:19293: checking whether to build static libraries configure:19297: result: yes configure:19331: mpif90 -c -I. conftest.f90 >&5 configure:19334: $? = 0 configure:19763: checking for mpif90 option to produce PIC configure:19770: result: -fPIC configure:19778: checking if mpif90 PIC flag -fPIC works configure:19796: mpif90 -c -I. -fPIC conftest.f90 >&5 configure:19800: $? = 0 configure:19813: result: yes configure:19836: checking if mpif90 static flag -static works configure:19864: result: no configure:19876: checking if mpif90 supports -c -o file.o configure:19897: mpif90 -c -I. -o out/conftest2.o conftest.f90 >&5 configure:19901: $? = 0 configure:19923: result: yes configure:19928: checking if mpif90 supports -c -o file.o configure:19975: result: yes configure:20005: checking whether the mpif90 linker (/opt/apps/xalt/0.4.6/bin/ld -m elf_x86_64) supports shared libraries configure:21108: result: yes configure:21249: checking dynamic linker characteristics configure:21910: result: GNU/Linux ld.so configure:21963: checking how to hardcode library paths into programs configure:21988: result: immediate configure:22044: checking if we should install only statically linked executables configure:22079: checking if -Wl,-rpath should be used to link shared libs in nondefault directories configure:22096: result: yes configure:22106: checking make configure:22114: checking how make searches directories configure:22131: result: VPATH=DIR1 DIR2 ... configure:22196: checking whether make will build with undefined variables configure:22205: result: yes configure:22220: checking for production mode configure:22231: result: production configure:22270: checking for ceil in -lm configure:22303: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:22303: $? = 0 configure:22312: result: yes configure:22438: checking for ANSI C header files configure:22550: result: yes configure:22558: checking whether time.h and sys/time.h may both be included configure:22586: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22586: $? = 0 configure:22593: result: yes configure:22609: checking for difftime configure:22609: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:22609: $? = 0 configure:22609: result: yes configure:22620: checking for gettimeofday configure:22620: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:22620: $? = 0 configure:22620: result: yes configure:22631: checking for library containing clock_gettime configure:22670: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:22670: $? = 0 configure:22687: result: none required configure:22697: checking for clock_gettime configure:22697: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:22697: $? = 0 configure:22697: result: yes configure:22713: checking sys/resource.h usability configure:22713: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking sys/resource.h presence configure:22713: mpicc -E conftest.c configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking for sys/resource.h configure:22713: result: yes configure:22713: checking sys/time.h usability configure:22713: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking sys/time.h presence configure:22713: mpicc -E conftest.c configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking for sys/time.h configure:22713: result: yes configure:22713: checking for unistd.h configure:22713: result: yes configure:22713: checking sys/ioctl.h usability configure:22713: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking sys/ioctl.h presence configure:22713: mpicc -E conftest.c configure:22713: $? = 0 configure:22713: result: yes configure:22713: checking for sys/ioctl.h configure:22713: result: yes configure:22713: checking for sys/stat.h configure:22713: result: yes configure:22726: checking sys/socket.h usability configure:22726: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22726: $? = 0 configure:22726: result: yes configure:22726: checking sys/socket.h presence configure:22726: mpicc -E conftest.c configure:22726: $? = 0 configure:22726: result: yes configure:22726: checking for sys/socket.h configure:22726: result: yes configure:22726: checking for sys/types.h configure:22726: result: yes configure:22739: checking stddef.h usability configure:22739: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking stddef.h presence configure:22739: mpicc -E conftest.c configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking for stddef.h configure:22739: result: yes configure:22739: checking setjmp.h usability configure:22739: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking setjmp.h presence configure:22739: mpicc -E conftest.c configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking for setjmp.h configure:22739: result: yes configure:22739: checking features.h usability configure:22739: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking features.h presence configure:22739: mpicc -E conftest.c configure:22739: $? = 0 configure:22739: result: yes configure:22739: checking for features.h configure:22739: result: yes configure:22751: checking for stdint.h configure:22751: result: yes configure:22765: checking mach/mach_time.h usability configure:22765: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 conftest.c(75): catastrophic error: cannot open source file "mach/mach_time.h" #include ^ compilation aborted for conftest.c (code 4) configure:22765: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:22765: result: no configure:22765: checking mach/mach_time.h presence configure:22765: mpicc -E conftest.c conftest.c(42): error #2379: cannot open source file "mach/mach_time.h" #include ^ configure:22765: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include configure:22765: result: no configure:22765: checking for mach/mach_time.h configure:22765: result: no configure:22868: checking io.h usability configure:22868: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 conftest.c(75): catastrophic error: cannot open source file "io.h" #include ^ compilation aborted for conftest.c (code 4) configure:22868: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:22868: result: no configure:22868: checking io.h presence configure:22868: mpicc -E conftest.c conftest.c(42): error #2379: cannot open source file "io.h" #include ^ configure:22868: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include configure:22868: result: no configure:22868: checking for io.h configure:22868: result: no configure:22868: checking winsock2.h usability configure:22868: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 conftest.c(75): catastrophic error: cannot open source file "winsock2.h" #include ^ compilation aborted for conftest.c (code 4) configure:22868: $? = 4 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #include configure:22868: result: no configure:22868: checking winsock2.h presence configure:22868: mpicc -E conftest.c conftest.c(42): error #2379: cannot open source file "winsock2.h" #include ^ configure:22868: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | /* end confdefs.h. */ | #include configure:22868: result: no configure:22868: checking for winsock2.h configure:22868: result: no configure:22868: checking sys/timeb.h usability configure:22868: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:22868: $? = 0 configure:22868: result: yes configure:22868: checking sys/timeb.h presence configure:22868: mpicc -E conftest.c configure:22868: $? = 0 configure:22868: result: yes configure:22868: checking for sys/timeb.h configure:22868: result: yes configure:22939: checking if libtool needs -no-undefined flag to build shared libraries configure:22950: result: no configure:22959: checking if configure should try to set up large file support configure:22989: result: yes configure:22994: checking for special C compiler options needed for large files configure:23047: result: no configure:23061: checking for _FILE_OFFSET_BITS value needed for large files configure:23094: mpicc -c -fPIC -wd1572 -O3 -xhost conftest.c >&5 configure:23094: $? = 0 configure:23134: result: no configure:23238: checking if large (64-bit) files are supported on this system. configure:23269: mpicc -o conftest -fPIC -wd1572 -O3 -xhost conftest.c -lm >&5 configure:23269: $? = 0 configure:23269: ./conftest configure:23269: $? = 0 configure:23282: result: yes configure:23363: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23363: $? = 0 configure:23367: checking for lseek64 configure:23367: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23367: $? = 0 configure:23367: result: yes configure:23367: checking for fseeko64 configure:23367: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23367: $? = 0 configure:23367: result: yes configure:23367: checking for ftello64 configure:23367: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23367: $? = 0 configure:23367: result: yes configure:23367: checking for ftruncate64 configure:23367: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23367: $? = 0 configure:23367: result: yes configure:23384: checking for fseeko configure:23384: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23384: $? = 0 configure:23384: result: yes configure:23384: checking for ftello configure:23384: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23384: $? = 0 configure:23384: result: yes configure:23414: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23414: $? = 0 configure:23418: checking for stat64 configure:23418: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23418: $? = 0 configure:23418: result: yes configure:23418: checking for fstat64 configure:23418: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23418: $? = 0 configure:23418: result: yes configure:23436: checking for off_t configure:23436: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23436: $? = 0 configure:23436: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(95): error: expected an expression if (sizeof ((off_t))) ^ compilation aborted for conftest.c (code 2) configure:23436: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((off_t))) | return 0; | ; | return 0; | } configure:23436: result: yes configure:23447: checking for size_t configure:23447: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23447: $? = 0 configure:23447: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(95): error: expected an expression if (sizeof ((size_t))) ^ compilation aborted for conftest.c (code 2) configure:23447: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((size_t))) | return 0; | ; | return 0; | } configure:23447: result: yes configure:23458: checking for ssize_t configure:23458: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23458: $? = 0 configure:23458: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(95): error: expected an expression if (sizeof ((ssize_t))) ^ compilation aborted for conftest.c (code 2) configure:23458: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((ssize_t))) | return 0; | ; | return 0; | } configure:23458: result: yes configure:23469: checking for ptrdiff_t configure:23469: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23469: $? = 0 configure:23469: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(95): error: expected an expression if (sizeof ((ptrdiff_t))) ^ compilation aborted for conftest.c (code 2) configure:23469: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TYPES_H | # include | #endif | #ifdef HAVE_SYS_STAT_H | # include | #endif | #ifdef STDC_HEADERS | # include | # include | #else | # ifdef HAVE_STDLIB_H | # include | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include | # endif | # include | #endif | #ifdef HAVE_STRINGS_H | # include | #endif | #ifdef HAVE_INTTYPES_H | # include | #endif | #ifdef HAVE_STDINT_H | # include | #endif | #ifdef HAVE_UNISTD_H | # include | #endif | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | if (sizeof ((ptrdiff_t))) | return 0; | ; | return 0; | } configure:23469: result: yes configure:23480: checking whether byte ordering is bigendian configure:23495: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(52): error: identifier "not" is undefined not a universal capable compiler ^ conftest.c(52): error: expected a ";" not a universal capable compiler ^ compilation aborted for conftest.c (code 2) configure:23495: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #ifndef __APPLE_CC__ | not a universal capable compiler | #endif | typedef int dummy; | configure:23548: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:23548: $? = 0 configure:23574: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(66): error: identifier "not" is undefined not big endian ^ conftest.c(66): error: expected a ";" not big endian ^ conftest.c(69): warning #12: parsing restarts here after previous syntax error ; ^ compilation aborted for conftest.c (code 2) configure:23574: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | /* end confdefs.h. */ | #include | #include | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:23734: result: no configure:23756: checking size of char configure:23761: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23761: $? = 0 configure:23761: ./conftest configure:23761: $? = 0 configure:23775: result: 1 configure:23789: checking size of short configure:23794: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23794: $? = 0 configure:23794: ./conftest configure:23794: $? = 0 configure:23808: result: 2 configure:23822: checking size of int configure:23827: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23827: $? = 0 configure:23827: ./conftest configure:23827: $? = 0 configure:23841: result: 4 configure:23855: checking size of unsigned configure:23860: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23860: $? = 0 configure:23860: ./conftest configure:23860: $? = 0 configure:23874: result: 4 configure:23888: checking size of long configure:23893: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23893: $? = 0 configure:23893: ./conftest configure:23893: $? = 0 configure:23907: result: 8 configure:23921: checking size of long long configure:23926: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23926: $? = 0 configure:23926: ./conftest configure:23926: $? = 0 configure:23940: result: 8 configure:23954: checking size of __int64 configure:23959: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23959: $? = 0 configure:23959: ./conftest configure:23959: $? = 0 configure:23973: result: 8 configure:23987: checking size of float configure:23992: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:23992: $? = 0 configure:23992: ./conftest configure:23992: $? = 0 configure:24006: result: 4 configure:24020: checking size of double configure:24025: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24025: $? = 0 configure:24025: ./conftest configure:24025: $? = 0 configure:24039: result: 8 configure:24053: checking size of long double configure:24058: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24058: $? = 0 configure:24058: ./conftest configure:24058: $? = 0 configure:24072: result: 16 configure:24185: checking size of int8_t configure:24190: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24190: $? = 0 configure:24190: ./conftest configure:24190: $? = 0 configure:24204: result: 1 configure:24218: checking size of uint8_t configure:24223: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24223: $? = 0 configure:24223: ./conftest configure:24223: $? = 0 configure:24237: result: 1 configure:24251: checking size of int_least8_t configure:24256: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24256: $? = 0 configure:24256: ./conftest configure:24256: $? = 0 configure:24270: result: 1 configure:24284: checking size of uint_least8_t configure:24289: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24289: $? = 0 configure:24289: ./conftest configure:24289: $? = 0 configure:24303: result: 1 configure:24317: checking size of int_fast8_t configure:24322: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24322: $? = 0 configure:24322: ./conftest configure:24322: $? = 0 configure:24336: result: 1 configure:24350: checking size of uint_fast8_t configure:24355: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24355: $? = 0 configure:24355: ./conftest configure:24355: $? = 0 configure:24369: result: 1 configure:24384: checking size of int16_t configure:24389: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24389: $? = 0 configure:24389: ./conftest configure:24389: $? = 0 configure:24403: result: 2 configure:24417: checking size of uint16_t configure:24422: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24422: $? = 0 configure:24422: ./conftest configure:24422: $? = 0 configure:24436: result: 2 configure:24450: checking size of int_least16_t configure:24455: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24455: $? = 0 configure:24455: ./conftest configure:24455: $? = 0 configure:24469: result: 2 configure:24483: checking size of uint_least16_t configure:24488: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24488: $? = 0 configure:24488: ./conftest configure:24488: $? = 0 configure:24502: result: 2 configure:24516: checking size of int_fast16_t configure:24521: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24521: $? = 0 configure:24521: ./conftest configure:24521: $? = 0 configure:24535: result: 8 configure:24549: checking size of uint_fast16_t configure:24554: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24554: $? = 0 configure:24554: ./conftest configure:24554: $? = 0 configure:24568: result: 8 configure:24583: checking size of int32_t configure:24588: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24588: $? = 0 configure:24588: ./conftest configure:24588: $? = 0 configure:24602: result: 4 configure:24616: checking size of uint32_t configure:24621: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24621: $? = 0 configure:24621: ./conftest configure:24621: $? = 0 configure:24635: result: 4 configure:24649: checking size of int_least32_t configure:24654: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24654: $? = 0 configure:24654: ./conftest configure:24654: $? = 0 configure:24668: result: 4 configure:24682: checking size of uint_least32_t configure:24687: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24687: $? = 0 configure:24687: ./conftest configure:24687: $? = 0 configure:24701: result: 4 configure:24715: checking size of int_fast32_t configure:24720: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24720: $? = 0 configure:24720: ./conftest configure:24720: $? = 0 configure:24734: result: 8 configure:24748: checking size of uint_fast32_t configure:24753: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24753: $? = 0 configure:24753: ./conftest configure:24753: $? = 0 configure:24767: result: 8 configure:24782: checking size of int64_t configure:24787: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24787: $? = 0 configure:24787: ./conftest configure:24787: $? = 0 configure:24801: result: 8 configure:24815: checking size of uint64_t configure:24820: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24820: $? = 0 configure:24820: ./conftest configure:24820: $? = 0 configure:24834: result: 8 configure:24848: checking size of int_least64_t configure:24853: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24853: $? = 0 configure:24853: ./conftest configure:24853: $? = 0 configure:24867: result: 8 configure:24881: checking size of uint_least64_t configure:24886: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24886: $? = 0 configure:24886: ./conftest configure:24886: $? = 0 configure:24900: result: 8 configure:24914: checking size of int_fast64_t configure:24919: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24919: $? = 0 configure:24919: ./conftest configure:24919: $? = 0 configure:24933: result: 8 configure:24947: checking size of uint_fast64_t configure:24952: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24952: $? = 0 configure:24952: ./conftest configure:24952: $? = 0 configure:24966: result: 8 configure:24981: checking size of size_t configure:24986: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:24986: $? = 0 configure:24986: ./conftest configure:24986: $? = 0 configure:25000: result: 8 configure:25014: checking size of ssize_t configure:25019: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:25019: $? = 0 configure:25019: ./conftest configure:25019: $? = 0 configure:25033: result: 8 configure:25047: checking size of ptrdiff_t configure:25052: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:25052: $? = 0 configure:25052: ./conftest configure:25052: $? = 0 configure:25066: result: 8 configure:25084: checking size of off_t configure:25089: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:25089: $? = 0 configure:25089: ./conftest configure:25089: $? = 0 configure:25103: result: 8 configure:25117: checking size of off64_t configure:25122: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lm >&5 configure:25122: $? = 0 configure:25122: ./conftest configure:25122: $? = 0 configure:25136: result: 8 configure:25237: checking if dev_t is scalar configure:25262: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:25262: $? = 0 configure:25266: result: yes configure:25379: checking for dmalloc library configure:25381: result: suppressed configure:25521: checking zlib.h usability configure:25521: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:25521: $? = 0 configure:25521: result: yes configure:25521: checking zlib.h presence configure:25521: mpicc -E -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c configure:25521: $? = 0 configure:25521: result: yes configure:25521: checking for zlib.h configure:25521: result: yes configure:25531: checking for compress2 in -lz configure:25564: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:25564: $? = 0 configure:25573: result: yes configure:25586: checking for compress2 configure:25586: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:25586: $? = 0 configure:25586: result: yes configure:25831: checking for szlib configure:25833: result: suppressed configure:26218: checking for pthread configure:26220: result: suppressed configure:26407: checking for thread safe support configure:26434: result: no configure:26484: checking whether CLOCK_MONOTONIC is declared configure:26484: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26484: $? = 0 configure:26484: result: yes configure:26499: checking for tm_gmtoff in struct tm configure:26522: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26522: $? = 0 configure:26526: result: yes configure:26535: checking for __tm_gmtoff in struct tm configure:26558: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(112): error: struct "tm" has no field "__tm_gmtoff" struct tm tm; tm.__tm_gmtoff=0; ^ compilation aborted for conftest.c (code 2) configure:26558: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | /* end confdefs.h. */ | | #include | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | struct tm tm; tm.__tm_gmtoff=0; | ; | return 0; | } configure:26565: result: no configure:26571: checking for global timezone variable configure:26601: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(112): error: identifier "timezone" is undefined timezone=0; ^ compilation aborted for conftest.c (code 2) configure:26601: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | /* end confdefs.h. */ | | #include | #include | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | timezone=0; | ; | return 0; | } configure:26608: result: no configure:26617: checking whether struct tm is in sys/time.h or time.h configure:26645: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26645: $? = 0 configure:26652: result: time.h configure:26660: checking for struct tm.tm_zone configure:26660: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26660: $? = 0 configure:26660: result: yes configure:26735: checking for struct timezone configure:26759: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26759: $? = 0 configure:26764: result: yes configure:26775: checking whether gettimeofday() gives timezone configure:26804: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(113): warning #266: function "exit" declared implicitly exit(1); ^ conftest.c(114): warning #266: function "exit" declared implicitly else exit (0); ^ configure:26804: $? = 0 configure:26804: ./conftest configure:26804: $? = 0 configure:26817: result: yes configure:26831: checking for st_blocks in struct stat configure:26853: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26853: $? = 0 configure:26857: result: yes configure:26871: checking for _getvideoconfig configure:26871: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccBr0AUD.o: In function `main': conftest.c:(.text+0x37): undefined reference to `_getvideoconfig' /usr/bin/ld: link errors found, deleting executable `conftest' configure:26871: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | /* end confdefs.h. */ | /* Define _getvideoconfig to an innocuous variant, in case declares _getvideoconfig. | For example, HP-UX 11i declares gettimeofday. */ | #define _getvideoconfig innocuous__getvideoconfig | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _getvideoconfig (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _getvideoconfig | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _getvideoconfig (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__getvideoconfig || defined __stub____getvideoconfig | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return _getvideoconfig (); | ; | return 0; | } configure:26871: result: no configure:26871: checking for gettextinfo configure:26871: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/icc9AeZL6.o: In function `main': conftest.c:(.text+0x37): undefined reference to `gettextinfo' /usr/bin/ld: link errors found, deleting executable `conftest' configure:26871: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | /* end confdefs.h. */ | /* Define gettextinfo to an innocuous variant, in case declares gettextinfo. | For example, HP-UX 11i declares gettimeofday. */ | #define gettextinfo innocuous_gettextinfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gettextinfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gettextinfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gettextinfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_gettextinfo || defined __stub___gettextinfo | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return gettextinfo (); | ; | return 0; | } configure:26871: result: no configure:26871: checking for GetConsoleScreenBufferInfo configure:26871: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccIIwBoA.o: In function `main': conftest.c:(.text+0x37): undefined reference to `GetConsoleScreenBufferInfo' /usr/bin/ld: link errors found, deleting executable `conftest' configure:26871: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | /* end confdefs.h. */ | /* Define GetConsoleScreenBufferInfo to an innocuous variant, in case declares GetConsoleScreenBufferInfo. | For example, HP-UX 11i declares gettimeofday. */ | #define GetConsoleScreenBufferInfo innocuous_GetConsoleScreenBufferInfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char GetConsoleScreenBufferInfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef GetConsoleScreenBufferInfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char GetConsoleScreenBufferInfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_GetConsoleScreenBufferInfo || defined __stub___GetConsoleScreenBufferInfo | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return GetConsoleScreenBufferInfo (); | ; | return 0; | } configure:26871: result: no configure:26883: checking for _scrsize configure:26883: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccUL10TO.o: In function `main': conftest.c:(.text+0x37): undefined reference to `_scrsize' /usr/bin/ld: link errors found, deleting executable `conftest' configure:26883: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | /* end confdefs.h. */ | /* Define _scrsize to an innocuous variant, in case declares _scrsize. | For example, HP-UX 11i declares gettimeofday. */ | #define _scrsize innocuous__scrsize | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _scrsize (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _scrsize | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _scrsize (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__scrsize || defined __stub____scrsize | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return _scrsize (); | ; | return 0; | } configure:26883: result: no configure:26883: checking for ioctl configure:26883: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:26883: $? = 0 configure:26883: result: yes configure:26893: checking for struct videoconfig configure:26914: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(116): error: incomplete type is not allowed struct videoconfig w; w.numtextcols=0; ^ compilation aborted for conftest.c (code 2) configure:26914: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | /* end confdefs.h. */ | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | struct videoconfig w; w.numtextcols=0; | ; | return 0; | } configure:26921: result: no configure:26926: checking for struct text_info configure:26947: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 conftest.c(116): error: incomplete type is not allowed struct text_info w; w.screenwidth=0; ^ compilation aborted for conftest.c (code 2) configure:26947: $? = 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | /* end confdefs.h. */ | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | struct text_info w; w.screenwidth=0; | ; | return 0; | } configure:26954: result: no configure:26959: checking for TIOCGWINSZ configure:26980: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:26980: $? = 0 configure:26984: result: yes configure:26992: checking for TIOCGETD configure:27013: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27013: $? = 0 configure:27017: result: yes configure:27032: checking for alarm configure:27032: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27032: $? = 0 configure:27032: result: yes configure:27032: checking for BSDgettimeofday configure:27032: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccscmzms.o: In function `main': conftest.c:(.text+0x37): undefined reference to `BSDgettimeofday' /usr/bin/ld: link errors found, deleting executable `conftest' configure:27032: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | /* end confdefs.h. */ | /* Define BSDgettimeofday to an innocuous variant, in case declares BSDgettimeofday. | For example, HP-UX 11i declares gettimeofday. */ | #define BSDgettimeofday innocuous_BSDgettimeofday | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char BSDgettimeofday (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef BSDgettimeofday | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char BSDgettimeofday (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_BSDgettimeofday || defined __stub___BSDgettimeofday | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return BSDgettimeofday (); | ; | return 0; | } configure:27032: result: no configure:27032: checking for fork configure:27032: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27032: $? = 0 configure:27032: result: yes configure:27032: checking for frexpf configure:27032: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27032: $? = 0 configure:27032: result: yes configure:27032: checking for frexpl configure:27032: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27032: $? = 0 configure:27032: result: yes configure:27044: checking for gethostname configure:27044: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27044: $? = 0 configure:27044: result: yes configure:27044: checking for getpwuid configure:27044: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27044: $? = 0 configure:27044: result: yes configure:27044: checking for getrusage configure:27044: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27044: $? = 0 configure:27044: result: yes configure:27044: checking for lstat configure:27044: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27044: $? = 0 configure:27044: result: yes configure:27056: checking for rand_r configure:27056: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27056: $? = 0 configure:27056: result: yes configure:27056: checking for random configure:27056: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27056: $? = 0 configure:27056: result: yes configure:27056: checking for setsysinfo configure:27056: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccamkyNW.o: In function `main': conftest.c:(.text+0x37): undefined reference to `setsysinfo' /usr/bin/ld: link errors found, deleting executable `conftest' configure:27056: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | /* end confdefs.h. */ | /* Define setsysinfo to an innocuous variant, in case declares setsysinfo. | For example, HP-UX 11i declares gettimeofday. */ | #define setsysinfo innocuous_setsysinfo | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char setsysinfo (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef setsysinfo | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setsysinfo (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_setsysinfo || defined __stub___setsysinfo | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return setsysinfo (); | ; | return 0; | } configure:27056: result: no configure:27068: checking for signal configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27068: $? = 0 configure:27068: result: yes configure:27068: checking for longjmp configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27068: $? = 0 configure:27068: result: yes configure:27068: checking for setjmp configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27068: $? = 0 configure:27068: result: yes configure:27068: checking for siglongjmp configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27068: $? = 0 configure:27068: result: yes configure:27068: checking for sigsetjmp configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 /tmp/iccfEK1iY.o: In function `main': conftest.c:(.text+0x42): undefined reference to `sigsetjmp' /usr/bin/ld: link errors found, deleting executable `conftest' configure:27068: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | #define HAVE_SIGNAL 1 | #define HAVE_LONGJMP 1 | #define HAVE_SETJMP 1 | #define HAVE_SIGLONGJMP 1 | /* end confdefs.h. */ | /* Define sigsetjmp to an innocuous variant, in case declares sigsetjmp. | For example, HP-UX 11i declares gettimeofday. */ | #define sigsetjmp innocuous_sigsetjmp | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sigsetjmp (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sigsetjmp | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sigsetjmp (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sigsetjmp || defined __stub___sigsetjmp | choke me | #endif | | #ifdef FC_DUMMY_MAIN | #ifndef FC_DUMMY_MAIN_EQ_F77 | # ifdef __cplusplus | extern "C" | # endif | int FC_DUMMY_MAIN() { return 1; } | #endif | #endif | int | main () | { | return sigsetjmp (); | ; | return 0; | } configure:27068: result: no configure:27068: checking for sigprocmask configure:27068: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27068: $? = 0 configure:27068: result: yes configure:27080: checking for snprintf configure:27080: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27080: $? = 0 configure:27080: result: yes configure:27080: checking for srandom configure:27080: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27080: $? = 0 configure:27080: result: yes configure:27080: checking for strdup configure:27080: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27080: $? = 0 configure:27080: result: yes configure:27080: checking for symlink configure:27080: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27080: $? = 0 configure:27080: result: yes configure:27080: checking for system configure:27080: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27080: $? = 0 configure:27080: result: yes configure:27092: checking for tmpfile configure:27092: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27092: $? = 0 configure:27092: result: yes configure:27092: checking for vasprintf configure:27092: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27092: $? = 0 configure:27092: result: yes configure:27092: checking for waitpid configure:27092: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27092: $? = 0 configure:27092: result: yes configure:27107: checking for vsnprintf configure:27107: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27107: $? = 0 configure:27107: result: yes configure:27123: checking if vsnprintf returns correct value configure:27161: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27161: $? = 0 configure:27161: ./conftest configure:27161: $? = 0 configure:27174: result: yes configure:27193: checking if lone colon can be used as an argument configure:27215: result: yes configure:27223: checking for an ANSI C-conforming const configure:27297: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27297: $? = 0 configure:27304: result: yes configure:27312: checking for inline configure:27328: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27328: $? = 0 configure:27336: result: inline configure:27355: checking for __attribute__ extension configure:27376: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27376: $? = 0 configure:27380: result: yes configure:27388: checking for __func__ extension configure:27409: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27409: $? = 0 configure:27413: result: yes configure:27420: checking for __FUNCTION__ extension configure:27441: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27441: $? = 0 configure:27445: result: yes configure:27452: checking for C99 designated initialization support configure:27481: mpicc -c -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c >&5 configure:27481: $? = 0 configure:27485: result: yes configure:27501: checking how to print long long configure:27530: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27530: $? = 0 configure:27530: ./conftest configure:27530: $? = 0 configure:27541: result: %ld and %lu configure:27553: checking Threads support system scope configure:27583: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:27583: $? = 0 configure:27583: ./conftest configure:27583: $? = 0 configure:27599: result: yes configure:27667: checking for gpfs configure:27669: result: suppressed configure:27678: checking for debug flags configure:27711: result: none configure:27731: checking whether function stack tracking is enabled configure:27750: result: no configure:27758: checking whether metadata trace file code is enabled configure:27777: result: no configure:27787: checking for API tracing configure:27812: result: no configure:27824: checking for instrumented library configure:27851: result: no configure:27862: checking whether to clear file buffers configure:27873: result: yes configure:27893: checking whether a memory checking tool will be used configure:27912: result: no configure:28047: checking for parallel support files configure:28061: result: provided by compiler configure:28086: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(150): warning #266: function "MPI_Init" declared implicitly MPI_Init() ^ configure:28086: $? = 0 configure:28224: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(150): warning #266: function "MPI_File_open" declared implicitly MPI_File_open() ^ configure:28224: $? = 0 configure:28304: mpif90 -o conftest -I. conftest.f90 -lz -lm >&5 configure:28304: $? = 0 configure:28370: mpif90 -o conftest -I. conftest.f90 -lz -lm >&5 configure:28370: $? = 0 configure:28476: checking prefix for running on one processor configure:28478: result: none configure:28480: checking prefix for running in parallel configure:28482: result: /opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpiexec -n $${NPROCS:=6} configure:28486: checking whether a simple MPI-IO program can be linked configure:28507: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(151): warning #266: function "MPI_Init" declared implicitly MPI_Init(); MPI_File_open(); ^ conftest.c(151): warning #266: function "MPI_File_open" declared implicitly MPI_Init(); MPI_File_open(); ^ configure:28507: $? = 0 configure:28508: result: yes configure:28535: checking for MPI_Comm_c2f and MPI_Comm_f2c functions configure:28557: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:28557: $? = 0 configure:28561: result: yes configure:28571: checking for MPI_Info_c2f and MPI_Info_f2c functions configure:28592: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:28592: $? = 0 configure:28596: result: yes configure:28625: checking for MPE configure:28627: result: suppressed configure:29059: checking if MPI_File_set_size works for files over 2GB configure:29072: result: yes configure:29092: checking if MPI_File_get_size is enabled configure:29103: result: yes configure:29126: checking for I/O filters configure:29139: result: all (shuffle,fletcher32,nbit,scaleoffset) configure:29200: checking for Default Virtual File Driver definition configure:29212: result: yes configure:29239: checking for Direct Virtual File Driver support configure:29276: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(155): error: identifier "O_DIRECT" is undefined if((fid=open("tst_file", O_CREAT | O_TRUNC | O_DIRECT, 0755))<0) ^ conftest.c(156): warning #266: function "exit" declared implicitly exit(1); ^ conftest.c(157): warning #266: function "close" declared implicitly close(fid); ^ conftest.c(158): warning #266: function "remove" declared implicitly remove("tst_file"); ^ conftest.c(159): warning #266: function "exit" declared implicitly exit (0); ^ compilation aborted for conftest.c (code 2) configure:29276: $? = 2 configure: program exited with status 2 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | #define HAVE_SIGNAL 1 | #define HAVE_LONGJMP 1 | #define HAVE_SETJMP 1 | #define HAVE_SIGLONGJMP 1 | #define HAVE_SIGPROCMASK 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SRANDOM 1 | #define HAVE_STRDUP 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSTEM 1 | #define HAVE_TMPFILE 1 | #define HAVE_VASPRINTF 1 | #define HAVE_WAITPID 1 | #define HAVE_VSNPRINTF 1 | #define VSNPRINTF_WORKS 1 | #define HAVE_ATTRIBUTE 1 | #define HAVE_C99_FUNC 1 | #define HAVE_FUNCTION 1 | #define HAVE_C99_DESIGNATED_INITIALIZER 1 | #define PRINTF_LL_WIDTH "l" | #define SYSTEM_SCOPE_THREADS 1 | #define CLEAR_MEMORY 1 | #define HAVE_PARALLEL 1 | #define HAVE_MPI_MULTI_LANG_Comm 1 | #define HAVE_MPI_MULTI_LANG_Info 1 | #define MPI_FILE_SET_SIZE_BIG 1 | #define HAVE_MPI_GET_SIZE 1 | #define HAVE_FILTER_SHUFFLE 1 | #define HAVE_FILTER_FLETCHER32 1 | #define HAVE_FILTER_NBIT 1 | #define HAVE_FILTER_SCALEOFFSET 1 | #define DEFAULT_VFD H5FD_SEC2 | /* end confdefs.h. */ | | #include | #include | #include | int main(void) | { | int fid; | if((fid=open("tst_file", O_CREAT | O_TRUNC | O_DIRECT, 0755))<0) | exit(1); | close(fid); | remove("tst_file"); | exit (0); | } configure:29320: result: no configure:29344: checking whether exception handling functions is checked during data conversions configure:29355: result: yes configure:29371: checking whether data accuracy is guaranteed during data conversions configure:29382: result: yes configure:29398: checking if converting denormalized floating-point values is possible configure:29411: result: yes configure:29424: checking if converting floating-point values to long long is not working configure:29440: result: false configure:29450: checking if the machine has window style path name configure:29462: result: no configure:29474: checking if converting from long double to integers is accurate configure:29492: result: yes configure:29507: checking if converting from long double to integers works configure:29548: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(162): warning #266: function "malloc" declared implicitly align = (void*)malloc(sizeof(long double)); ^ conftest.c(163): warning #266: function "memcpy" declared implicitly memcpy(align, &ld, sizeof(long double)); ^ conftest.c(172): warning #266: function "exit" declared implicitly exit(ret); ^ configure:29548: $? = 0 configure:29548: ./conftest configure:29548: $? = 0 configure:29565: result: yes configure:29579: checking if accurately converting from integers to long double configure:29597: result: yes configure:29612: checking if accurately converting unsigned long to float values configure:29656: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(180): warning #266: function "exit" declared implicitly exit(ret); ^ configure:29656: $? = 0 configure:29656: ./conftest configure:29656: $? = 0 configure:29672: result: yes configure:29688: checking if accurately converting unsigned long long to floating-point values configure:29788: result: yes configure:29802: checking if accurately roundup converting floating-point to unsigned long long values configure:29835: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(171): warning #266: function "exit" declared implicitly exit(ret); ^ configure:29835: $? = 0 configure:29835: ./conftest configure:29835: $? = 0 configure:29851: result: yes configure:29865: checking if right maximum converting floating-point to unsigned long long values configure:29905: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(179): warning #266: function "exit" declared implicitly exit(ret); ^ configure:29905: $? = 0 configure:29905: ./conftest configure:29905: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | #define HAVE_SIGNAL 1 | #define HAVE_LONGJMP 1 | #define HAVE_SETJMP 1 | #define HAVE_SIGLONGJMP 1 | #define HAVE_SIGPROCMASK 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SRANDOM 1 | #define HAVE_STRDUP 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSTEM 1 | #define HAVE_TMPFILE 1 | #define HAVE_VASPRINTF 1 | #define HAVE_WAITPID 1 | #define HAVE_VSNPRINTF 1 | #define VSNPRINTF_WORKS 1 | #define HAVE_ATTRIBUTE 1 | #define HAVE_C99_FUNC 1 | #define HAVE_FUNCTION 1 | #define HAVE_C99_DESIGNATED_INITIALIZER 1 | #define PRINTF_LL_WIDTH "l" | #define SYSTEM_SCOPE_THREADS 1 | #define CLEAR_MEMORY 1 | #define HAVE_PARALLEL 1 | #define HAVE_MPI_MULTI_LANG_Comm 1 | #define HAVE_MPI_MULTI_LANG_Info 1 | #define MPI_FILE_SET_SIZE_BIG 1 | #define HAVE_MPI_GET_SIZE 1 | #define HAVE_FILTER_SHUFFLE 1 | #define HAVE_FILTER_FLETCHER32 1 | #define HAVE_FILTER_NBIT 1 | #define HAVE_FILTER_SCALEOFFSET 1 | #define DEFAULT_VFD H5FD_SEC2 | #define WANT_DCONV_EXCEPTION 1 | #define WANT_DATA_ACCURACY 1 | #define CONVERT_DENORMAL_FLOAT 1 | #define LDOUBLE_TO_INTEGER_ACCURATE 1 | #define LDOUBLE_TO_INTEGER_WORKS 1 | #define INTEGER_TO_LDOUBLE_ACCURATE 1 | #define ULONG_TO_FLOAT_ACCURATE 1 | #define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1 | #define FP_TO_ULLONG_ACCURATE 1 | /* end confdefs.h. */ | | int main(void) | { | float f = 9701917572145405952.00f; | double d1 = 9701917572145405952.00L; | long double d2 = 9701917572145405952.00L; | double d3 = 2e40L; | unsigned long long l1 = (unsigned long long)f; | unsigned long long l2 = (unsigned long long)d1; | unsigned long long l3 = (unsigned long long)d2; | unsigned long long l4; | unsigned long long l5 = 0x7fffffffffffffffULL; | int ret = 0; | | if(l1 <= l5 || l2 <= l5 || l3 <= l5) | ret = 1; | | l4 = (unsigned long long)d3; | if(l4 <= l5) | ret = 1; | | done: | exit(ret); | } | configure:29924: result: no configure:29933: checking if correctly converting long double to unsigned int values configure:29966: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(169): warning #266: function "exit" declared implicitly exit(ret); ^ configure:29966: $? = 0 configure:29966: ./conftest configure:29966: $? = 0 configure:29983: result: yes configure:29997: checking if compiling unsigned long long to floating-point typecasts work configure:30010: result: yes configure:30024: checking if compiling long long to floating-point typecasts work configure:30037: result: yes configure:30051: checking if converting unsigned long long to long double with precision configure:30144: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:30144: $? = 0 configure:30144: ./conftest configure:30144: $? = 0 configure:30161: result: yes configure:30175: checking if overflows normally converting floating-point to integer values configure:30202: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(170): warning #266: function "exit" declared implicitly exit(0); ^ configure:30202: $? = 0 configure:30202: ./conftest configure:30202: $? = 0 configure:30218: result: yes configure:30234: checking if using special algorithm to convert long double to (unsigned) long values configure:30307: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(177): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(214): warning #266: function "exit" declared implicitly exit(ret); ^ configure:30307: $? = 0 configure:30307: ./conftest configure:30307: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | #define HAVE_SIGNAL 1 | #define HAVE_LONGJMP 1 | #define HAVE_SETJMP 1 | #define HAVE_SIGLONGJMP 1 | #define HAVE_SIGPROCMASK 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SRANDOM 1 | #define HAVE_STRDUP 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSTEM 1 | #define HAVE_TMPFILE 1 | #define HAVE_VASPRINTF 1 | #define HAVE_WAITPID 1 | #define HAVE_VSNPRINTF 1 | #define VSNPRINTF_WORKS 1 | #define HAVE_ATTRIBUTE 1 | #define HAVE_C99_FUNC 1 | #define HAVE_FUNCTION 1 | #define HAVE_C99_DESIGNATED_INITIALIZER 1 | #define PRINTF_LL_WIDTH "l" | #define SYSTEM_SCOPE_THREADS 1 | #define CLEAR_MEMORY 1 | #define HAVE_PARALLEL 1 | #define HAVE_MPI_MULTI_LANG_Comm 1 | #define HAVE_MPI_MULTI_LANG_Info 1 | #define MPI_FILE_SET_SIZE_BIG 1 | #define HAVE_MPI_GET_SIZE 1 | #define HAVE_FILTER_SHUFFLE 1 | #define HAVE_FILTER_FLETCHER32 1 | #define HAVE_FILTER_NBIT 1 | #define HAVE_FILTER_SCALEOFFSET 1 | #define DEFAULT_VFD H5FD_SEC2 | #define WANT_DCONV_EXCEPTION 1 | #define WANT_DATA_ACCURACY 1 | #define CONVERT_DENORMAL_FLOAT 1 | #define LDOUBLE_TO_INTEGER_ACCURATE 1 | #define LDOUBLE_TO_INTEGER_WORKS 1 | #define INTEGER_TO_LDOUBLE_ACCURATE 1 | #define ULONG_TO_FLOAT_ACCURATE 1 | #define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1 | #define FP_TO_ULLONG_ACCURATE 1 | #define LDOUBLE_TO_UINT_ACCURATE 1 | #define ULLONG_TO_FP_CAST_WORKS 1 | #define LLONG_TO_FP_CAST_WORKS 1 | #define ULLONG_TO_LDOUBLE_PRECISION 1 | #define FP_TO_INTEGER_OVERFLOW_WORKS 1 | /* end confdefs.h. */ | | int main(void) | { | long double ld = 20041683600089727.779961L; | long ll; | unsigned long ull; | unsigned char s[16]; | unsigned char s2[8]; | int ret = 1; | | if(sizeof(long double) == 16 && sizeof(long) == 8) { | /*make sure the long double type has 16 bytes in size and | * 11 bits of exponent. If it is, | *the bit sequence should be like below. It's not | *a decent way to check but this info isn't available. */ | memcpy(s, &ld, 16); | if(s[0]==0x43 && s[1]==0x51 && s[2]==0xcc && s[3]==0xf3 && | s[4]==0x85 && s[5]==0xeb && s[6]==0xc8 && s[7]==0xa0 && | s[8]==0xbf && s[9]==0xcc && s[10]==0x2a && s[11]==0x3c) { | | /* Assign the hexadecimal value of long double type. */ | s[0]=0x43; s[1]=0x51; s[2]=0xcc; s[3]=0xf3; | s[4]=0x85; s[5]=0xeb; s[6]=0xc8; s[7]=0xa0; | s[8]=0xbf; s[9]=0xcc; s[10]=0x2a; s[11]=0x3c; | s[12]=0x3d; s[13]=0x85; s[14]=0x56; s[15]=0x20; | | memcpy(&ld, s, 16); | | ll = (long)ld; | memcpy(s2, &ll, 8); | | /* The library's algorithm converts it to 0x 00 47 33 ce 17 af 22 82 | * and gets wrong value 20041683600089730 on the IBM Power6 Linux. | * But the IBM Power6 Linux converts it to 0x00 47 33 ce 17 af 22 7f | * and gets the correct value 20041683600089727. It uses some special | * algorithm. We're going to define the macro and skip the test until | * we can figure out how they do it. */ | if(s2[0]==0x00 && s2[1]==0x47 && s2[2]==0x33 && s2[3]==0xce && | s2[4]==0x17 && s2[5]==0xaf && s2[6]==0x22 && s2[7]==0x7f) | ret = 0; | | ull = (unsigned long)ld; | memcpy(s2, &ull, 8); | | /* The unsigned long is the same as signed long. */ | if(s2[0]==0x00 && s2[1]==0x47 && s2[2]==0x33 && s2[3]==0xce && | s2[4]==0x17 && s2[5]==0xaf && s2[6]==0x22 && s2[7]==0x7f) | ret = 0; | } | } | | done: | exit(ret); | } | configure:30327: result: no configure:30339: checking if using special algorithm to convert (unsigned) long to long double values configure:30414: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(175): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(184): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(200): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(216): warning #266: function "exit" declared implicitly exit(ret); ^ configure:30414: $? = 0 configure:30414: ./conftest configure:30414: $? = 1 configure: program exited with status 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "HDF5" | #define PACKAGE_TARNAME "hdf5" | #define PACKAGE_VERSION "1.8.10-patch1" | #define PACKAGE_STRING "HDF5 1.8.10-patch1" | #define PACKAGE_BUGREPORT "help@hdfgroup.org" | #define PACKAGE_URL "" | #define PACKAGE "hdf5" | #define VERSION "1.8.10-patch1" | #define FC_FUNC(name,NAME) name ## _ | #define FC_FUNC_(name,NAME) name ## _ | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_DLFCN_H 1 | #define LT_OBJDIR ".libs/" | #define HAVE_LIBM 1 | #define STDC_HEADERS 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_DIFFTIME 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SETJMP_H 1 | #define HAVE_FEATURES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_SYS_TIMEB_H 1 | #define HAVE_LSEEK64 1 | #define HAVE_FSEEKO64 1 | #define HAVE_FTELLO64 1 | #define HAVE_FTRUNCATE64 1 | #define HAVE_FSEEKO 1 | #define HAVE_FTELLO 1 | #define HAVE_STAT64 1 | #define HAVE_FSTAT64 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_SHORT 2 | #define SIZEOF_INT 4 | #define SIZEOF_UNSIGNED 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF___INT64 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_LONG_DOUBLE 16 | #include | #include | #define SIZEOF_INT8_T 1 | #define SIZEOF_UINT8_T 1 | #define SIZEOF_INT_LEAST8_T 1 | #define SIZEOF_UINT_LEAST8_T 1 | #define SIZEOF_INT_FAST8_T 1 | #define SIZEOF_UINT_FAST8_T 1 | #define SIZEOF_INT16_T 2 | #define SIZEOF_UINT16_T 2 | #define SIZEOF_INT_LEAST16_T 2 | #define SIZEOF_UINT_LEAST16_T 2 | #define SIZEOF_INT_FAST16_T 8 | #define SIZEOF_UINT_FAST16_T 8 | #define SIZEOF_INT32_T 4 | #define SIZEOF_UINT32_T 4 | #define SIZEOF_INT_LEAST32_T 4 | #define SIZEOF_UINT_LEAST32_T 4 | #define SIZEOF_INT_FAST32_T 8 | #define SIZEOF_UINT_FAST32_T 8 | #define SIZEOF_INT64_T 8 | #define SIZEOF_UINT64_T 8 | #define SIZEOF_INT_LEAST64_T 8 | #define SIZEOF_UINT_LEAST64_T 8 | #define SIZEOF_INT_FAST64_T 8 | #define SIZEOF_UINT_FAST64_T 8 | #define SIZEOF_SIZE_T 8 | #define SIZEOF_SSIZE_T 8 | #define SIZEOF_PTRDIFF_T 8 | #include /*for off_t definition*/ | #define SIZEOF_OFF_T 8 | #define SIZEOF_OFF64_T 8 | #define DEV_T_IS_SCALAR 1 | #define HAVE_ZLIB_H 1 | #define HAVE_LIBZ 1 | #define HAVE_FILTER_DEFLATE 1 | #define HAVE_TM_GMTOFF 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define HAVE_TM_ZONE 1 | #define HAVE_STRUCT_TIMEZONE 1 | #define GETTIMEOFDAY_GIVES_TZ 1 | #define HAVE_STAT_ST_BLOCKS 1 | #define HAVE_IOCTL 1 | #define HAVE_TIOCGWINSZ 1 | #define HAVE_TIOCGETD 1 | #define HAVE_ALARM 1 | #define HAVE_FORK 1 | #define HAVE_FREXPF 1 | #define HAVE_FREXPL 1 | #define HAVE_GETHOSTNAME 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_LSTAT 1 | #define HAVE_RAND_R 1 | #define HAVE_RANDOM 1 | #define HAVE_SIGNAL 1 | #define HAVE_LONGJMP 1 | #define HAVE_SETJMP 1 | #define HAVE_SIGLONGJMP 1 | #define HAVE_SIGPROCMASK 1 | #define HAVE_SNPRINTF 1 | #define HAVE_SRANDOM 1 | #define HAVE_STRDUP 1 | #define HAVE_SYMLINK 1 | #define HAVE_SYSTEM 1 | #define HAVE_TMPFILE 1 | #define HAVE_VASPRINTF 1 | #define HAVE_WAITPID 1 | #define HAVE_VSNPRINTF 1 | #define VSNPRINTF_WORKS 1 | #define HAVE_ATTRIBUTE 1 | #define HAVE_C99_FUNC 1 | #define HAVE_FUNCTION 1 | #define HAVE_C99_DESIGNATED_INITIALIZER 1 | #define PRINTF_LL_WIDTH "l" | #define SYSTEM_SCOPE_THREADS 1 | #define CLEAR_MEMORY 1 | #define HAVE_PARALLEL 1 | #define HAVE_MPI_MULTI_LANG_Comm 1 | #define HAVE_MPI_MULTI_LANG_Info 1 | #define MPI_FILE_SET_SIZE_BIG 1 | #define HAVE_MPI_GET_SIZE 1 | #define HAVE_FILTER_SHUFFLE 1 | #define HAVE_FILTER_FLETCHER32 1 | #define HAVE_FILTER_NBIT 1 | #define HAVE_FILTER_SCALEOFFSET 1 | #define DEFAULT_VFD H5FD_SEC2 | #define WANT_DCONV_EXCEPTION 1 | #define WANT_DATA_ACCURACY 1 | #define CONVERT_DENORMAL_FLOAT 1 | #define LDOUBLE_TO_INTEGER_ACCURATE 1 | #define LDOUBLE_TO_INTEGER_WORKS 1 | #define INTEGER_TO_LDOUBLE_ACCURATE 1 | #define ULONG_TO_FLOAT_ACCURATE 1 | #define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1 | #define FP_TO_ULLONG_ACCURATE 1 | #define LDOUBLE_TO_UINT_ACCURATE 1 | #define ULLONG_TO_FP_CAST_WORKS 1 | #define LLONG_TO_FP_CAST_WORKS 1 | #define ULLONG_TO_LDOUBLE_PRECISION 1 | #define FP_TO_INTEGER_OVERFLOW_WORKS 1 | /* end confdefs.h. */ | | int main(void) | { | long double ld; | long ll; | unsigned long ull; | unsigned char s[16]; | int flag=0, ret=1; | | /*Determine if long double has 16 byte in size, 11 bit exponent, and | *the bias is 0x3ff */ | if(sizeof(long double) == 16) { | ld = 1.0L; | memcpy(s, &ld, 16); | if(s[0]==0x3f && s[1]==0xf0 && s[2]==0x00 && s[3]==0x00 && | s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00) | flag = 1; | } | | if(flag==1 && sizeof(long)==8) { | ll = 0x003fffffffffffffL; | ld = (long double)ll; | memcpy(s, &ld, 16); | /* The library converts the value to 0x434fffffffffffff8000000000000000. | * In decimal it is 18014398509481982.000000, one value short of the original. | * The IBM Power6 Linux converts it to 0x4350000000000000bff0000000000000. | * The value is correct in decimal. It uses some special | * algorithm. We're going to define the macro and skip the test until | * we can figure out how they do it. */ | if(s[0]==0x43 && s[1]==0x50 && s[2]==0x00 && s[3]==0x00 && | s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00 && | s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 && | s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00) | ret = 0; | } | if(flag==1 && sizeof(unsigned long)==8) { | ull = 0xffffffffffffffffUL; | ld = (long double)ull; | memcpy(s, &ld, 16); | /* Use a different value from signed long to test. The problem is the same | * for both long and unsigned long. The value is 18446744073709551615. | * The library converts the value to 0x43effffffffffffffe000000000000000. | * In decimal it's 18446744073709548544.000000, very different from the original. | * The IBM Power6 Linux converts it to 0x43f0000000000000bff0000000000000. | * The value is correct in decimal. It uses some special | * algorithm. We're going to define the macro and skip the test until | * we can figure out how they do it. */ | if(s[0]==0x43 && s[1]==0xf0 && s[2]==0x00 && s[3]==0x00 && | s[4]==0x00 && s[5]==0x00 && s[6]==0x00 && s[7]==0x00 && | s[8]==0xbf && s[9]==0xf0 && s[10]==0x00 && s[11]==0x00 && | s[12]==0x00 && s[13]==0x00 && s[14]==0x00 && s[15]==0x00) | ret = 0; | } | done: | exit(ret); | } | configure:30434: result: no configure:30447: checking if correctly converting long double to (unsigned) long long values configure:30503: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(176): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(197): warning #266: function "exit" declared implicitly exit(ret); ^ configure:30503: $? = 0 configure:30503: ./conftest configure:30503: $? = 0 configure:30520: result: yes configure:30535: checking if correctly converting (unsigned) long long to long double values configure:30595: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 conftest.c(176): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(185): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(195): warning #266: function "memcpy" declared implicitly memcpy(s, &ld, 16); ^ conftest.c(202): warning #266: function "exit" declared implicitly exit(ret); ^ configure:30595: $? = 0 configure:30595: ./conftest configure:30595: $? = 0 configure:30612: result: yes configure:30625: checking if bad code for log2 routine is generated configure:30641: result: no configure:30810: checking if high level library is enabled configure:30835: checking additional programs should be built configure:30863: checking if deprecated public symbols are available configure:30875: result: yes configure:30894: checking which version of public symbols to use by default configure:30913: result: v18 configure:30934: checking Whether to perform strict file format checks configure:30961: result: no configure:30971: checking Whether to have library information embedded in the executables configure:30982: result: yes configure:30996: checking if alignment restrictions are strictly enforced configure:31057: mpicc -o conftest -std=c99 -O -fPIC -wd1572 -O3 -xhost -D_POSIX_C_SOURCE=199506L -D_BSD_SOURCE -D_LARGEFILE64_SOURCE -D_LARGEFILE_SOURCE conftest.c -lz -lm >&5 configure:31057: $? = 0 configure:31057: ./conftest configure:31057: $? = 0 configure:31062: result: no configure:31281: checking that generated files are newer than configure configure:31287: result: done configure:31367: creating ./config.status configure:34193: creating ./config.lt ## ------------------ ## ## Running config.lt. ## ## ------------------ ## config.lt:736: creating libtool ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by HDF5 config.status 1.8.10-patch1, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on login1.stampede.tacc.utexas.edu config.status:1540: creating src/libhdf5.settings config.status:1540: creating Makefile config.status:1540: creating src/Makefile config.status:1540: creating test/Makefile config.status:1540: creating test/testcheck_version.sh config.status:1540: creating test/testerror.sh config.status:1540: creating test/H5srcdir_str.h config.status:1540: creating test/testlibinfo.sh config.status:1540: creating test/testlinks_env.sh config.status:1540: creating testpar/Makefile config.status:1540: creating testpar/testph5.sh config.status:1540: creating perform/Makefile config.status:1540: creating tools/Makefile config.status:1540: creating tools/h5dump/Makefile config.status:1540: creating tools/h5dump/testh5dump.sh config.status:1540: creating tools/h5dump/testh5dumppbits.sh config.status:1540: creating tools/h5dump/testh5dumpxml.sh config.status:1540: creating tools/h5ls/testh5ls.sh config.status:1540: creating tools/h5import/Makefile config.status:1540: creating tools/h5import/h5importtestutil.sh config.status:1540: creating tools/h5diff/Makefile config.status:1540: creating tools/h5diff/testh5diff.sh config.status:1540: creating tools/h5diff/testph5diff.sh config.status:1540: creating tools/h5jam/Makefile config.status:1540: creating tools/h5jam/testh5jam.sh config.status:1540: creating tools/h5repack/Makefile config.status:1540: creating tools/h5repack/h5repack.sh config.status:1540: creating tools/h5ls/Makefile config.status:1540: creating tools/h5copy/Makefile config.status:1540: creating tools/h5copy/testh5copy.sh config.status:1540: creating tools/lib/Makefile config.status:1540: creating tools/misc/Makefile config.status:1540: creating tools/misc/h5cc config.status:1540: creating tools/misc/testh5mkgrp.sh config.status:1540: creating tools/misc/testh5repart.sh config.status:1540: creating tools/h5stat/testh5stat.sh config.status:1540: creating tools/h5stat/Makefile config.status:1540: creating examples/Makefile config.status:1540: creating examples/run-c-ex.sh config.status:1540: creating examples/testh5cc.sh config.status:1540: creating c++/Makefile config.status:1540: creating c++/src/Makefile config.status:1540: creating c++/src/h5c++ config.status:1540: creating c++/test/Makefile config.status:1540: creating c++/test/H5srcdir_str.h config.status:1540: creating c++/examples/Makefile config.status:1540: creating c++/examples/run-c++-ex.sh config.status:1540: creating c++/examples/testh5c++.sh config.status:1540: creating fortran/Makefile config.status:1540: creating fortran/src/h5fc config.status:1540: creating fortran/src/Makefile config.status:1540: creating fortran/test/Makefile config.status:1540: creating fortran/testpar/Makefile config.status:1540: creating fortran/examples/Makefile config.status:1540: creating fortran/examples/run-fortran-ex.sh config.status:1540: creating fortran/examples/testh5fc.sh config.status:1540: creating hl/Makefile config.status:1540: creating hl/src/Makefile config.status:1540: creating hl/test/Makefile config.status:1540: creating hl/test/H5srcdir_str.h config.status:1540: creating hl/tools/Makefile config.status:1540: creating hl/tools/gif2h5/Makefile config.status:1540: creating hl/tools/gif2h5/h52giftest.sh config.status:1540: creating hl/examples/Makefile config.status:1540: creating hl/examples/run-hlc-ex.sh config.status:1540: creating hl/c++/Makefile config.status:1540: creating hl/c++/src/Makefile config.status:1540: creating hl/c++/test/Makefile config.status:1540: creating hl/c++/examples/Makefile config.status:1540: creating hl/c++/examples/run-hlc++-ex.sh config.status:1540: creating hl/fortran/Makefile config.status:1540: creating hl/fortran/src/Makefile config.status:1540: creating hl/fortran/test/Makefile config.status:1540: creating hl/fortran/examples/Makefile config.status:1540: creating hl/fortran/examples/run-hlfortran-ex.sh config.status:1540: creating src/H5config.h config.status:1769: executing pubconf commands config.status:1769: executing depfiles commands config.status:1769: executing libtool commands ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-linux-gnu ac_cv_c_bigendian=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_c_inline=inline ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set=set ac_cv_env_CC_value=mpicc ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value=' -fPIC -wd1572 -O3 -xhost ' ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set=set ac_cv_env_FC_value=mpif90 ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_fc_compiler_gnu=no ac_cv_fc_dummy_main=none ac_cv_fc_libs=' -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' ac_cv_fc_mangling='lower case, underscore, no extra underscore' ac_cv_fc_srcext_f90=none ac_cv_fortran_dummy_main=none ac_cv_func_BSDgettimeofday=no ac_cv_func_GetConsoleScreenBufferInfo=no ac_cv_func__getvideoconfig=no ac_cv_func__scrsize=no ac_cv_func_alarm=yes ac_cv_func_clock_gettime=yes ac_cv_func_compress2=yes ac_cv_func_difftime=yes ac_cv_func_dlopen=yes ac_cv_func_fork=yes ac_cv_func_frexpf=yes ac_cv_func_frexpl=yes ac_cv_func_fseeko64=yes ac_cv_func_fseeko=yes ac_cv_func_fstat64=yes ac_cv_func_ftello64=yes ac_cv_func_ftello=yes ac_cv_func_ftruncate64=yes ac_cv_func_gethostname=yes ac_cv_func_getpwuid=yes ac_cv_func_getrusage=yes ac_cv_func_gettextinfo=no ac_cv_func_gettimeofday=yes ac_cv_func_ioctl=yes ac_cv_func_longjmp=yes ac_cv_func_lseek64=yes ac_cv_func_lstat=yes ac_cv_func_rand_r=yes ac_cv_func_random=yes ac_cv_func_setjmp=yes ac_cv_func_setsysinfo=no ac_cv_func_shl_load=no ac_cv_func_siglongjmp=yes ac_cv_func_signal=yes ac_cv_func_sigprocmask=yes ac_cv_func_sigsetjmp=no ac_cv_func_snprintf=yes ac_cv_func_srandom=yes ac_cv_func_stat64=yes ac_cv_func_strdup=yes ac_cv_func_symlink=yes ac_cv_func_system=yes ac_cv_func_tmpfile=yes ac_cv_func_vasprintf=yes ac_cv_func_vsnprintf=yes ac_cv_func_waitpid=yes ac_cv_have_decl_CLOCK_MONOTONIC=yes ac_cv_header_dlfcn_h=yes ac_cv_header_features_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_io_h=no ac_cv_header_mach_mach_time_h=no ac_cv_header_memory_h=yes ac_cv_header_setjmp_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_ioctl_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_timeb_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_header_winsock2_h=no ac_cv_header_zlib_h=yes ac_cv_host=x86_64-unknown-linux-gnu ac_cv_lib_dld_shl_load=no ac_cv_lib_m_ceil=yes ac_cv_lib_z_compress2=yes ac_cv_member_struct_tm_tm_zone=yes ac_cv_objext=o ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_FGREP='/bin/grep -F' ac_cv_path_GREP=/bin/grep ac_cv_path_SED=/bin/sed ac_cv_path_TR=/usr/bin/tr ac_cv_path_install='/usr/bin/install -c' ac_cv_path_mkdir=/bin/mkdir ac_cv_prog_AR=ar ac_cv_prog_AWK=gawk ac_cv_prog_CPP='mpicc -E' ac_cv_prog_CXXCPP='g++ -E' ac_cv_prog_PERL=perl ac_cv_prog_ac_ct_CC=mpicc ac_cv_prog_ac_ct_DLLTOOL=dlltool ac_cv_prog_ac_ct_OBJDUMP=objdump ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_ac_ct_STRIP=strip ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_prog_fc_g=yes ac_cv_prog_fc_v=-v ac_cv_prog_make_make_set=yes ac_cv_search_clock_gettime='none required' ac_cv_sizeof___int64=8 ac_cv_sizeof_char=1 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int16_t=2 ac_cv_sizeof_int32_t=4 ac_cv_sizeof_int64_t=8 ac_cv_sizeof_int8_t=1 ac_cv_sizeof_int=4 ac_cv_sizeof_int_fast16_t=8 ac_cv_sizeof_int_fast32_t=8 ac_cv_sizeof_int_fast64_t=8 ac_cv_sizeof_int_fast8_t=1 ac_cv_sizeof_int_least16_t=2 ac_cv_sizeof_int_least32_t=4 ac_cv_sizeof_int_least64_t=8 ac_cv_sizeof_int_least8_t=1 ac_cv_sizeof_long=8 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_off64_t=8 ac_cv_sizeof_off_t=8 ac_cv_sizeof_ptrdiff_t=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sizeof_ssize_t=8 ac_cv_sizeof_uint16_t=2 ac_cv_sizeof_uint32_t=4 ac_cv_sizeof_uint64_t=8 ac_cv_sizeof_uint8_t=1 ac_cv_sizeof_uint_fast16_t=8 ac_cv_sizeof_uint_fast32_t=8 ac_cv_sizeof_uint_fast64_t=8 ac_cv_sizeof_uint_fast8_t=1 ac_cv_sizeof_uint_least16_t=2 ac_cv_sizeof_uint_least32_t=4 ac_cv_sizeof_uint_least64_t=8 ac_cv_sizeof_uint_least8_t=1 ac_cv_sizeof_unsigned=4 ac_cv_struct_tm=time.h ac_cv_sys_file_offset_bits=no ac_cv_sys_largefile_CC=no ac_cv_type_off_t=yes ac_cv_type_ptrdiff_t=yes ac_cv_type_size_t=yes ac_cv_type_ssize_t=yes am_cv_CC_dependencies_compiler_type=gcc3 am_cv_CXX_dependencies_compiler_type=gcc3 am_cv_make_support_nested_variables=yes hdf5_cv_bad_log2_code_generated=no hdf5_cv_convert_denormal_float=yes hdf5_cv_convert_float_llong_not_works=no hdf5_cv_direct_io=no hdf5_cv_fp_to_integer_overflow_works=yes hdf5_cv_fp_to_ullong_accurate=yes hdf5_cv_fp_to_ullong_right_maximum=no hdf5_cv_gettimeofday_tz=yes hdf5_cv_have_lfs=yes hdf5_cv_host=x86_64-unknown-linux-gnu hdf5_cv_integer_to_ldouble_accurate=yes hdf5_cv_ldouble_to_integer_accurate=yes hdf5_cv_ldouble_to_integer_works=yes hdf5_cv_ldouble_to_llong_accurate=yes hdf5_cv_ldouble_to_long_special=no hdf5_cv_ldouble_to_uint_accurate=yes hdf5_cv_llong_to_fp_cast_works=yes hdf5_cv_llong_to_ldouble_correct=yes hdf5_cv_lone_colon=yes hdf5_cv_long_to_ldouble_special=no hdf5_cv_mpi_file_set_size_big=yes hdf5_cv_printf_ll=l hdf5_cv_system_scope_threads=yes hdf5_cv_ullong_to_fp_cast_works=yes hdf5_cv_ullong_to_ldouble_precision=yes hdf5_cv_ulong_to_float_accurate=yes hdf5_cv_ulong_to_fp_bottom_bit_accurate=yes hdf5_cv_vsnprintf_works=yes lt_cv_ar_at_file=@ lt_cv_archive_cmds_need_lc=no lt_cv_deplibs_check_method=pass_all lt_cv_dlopen=dlopen lt_cv_dlopen_libs= lt_cv_dlopen_self=yes lt_cv_dlopen_self_static=yes lt_cv_file_magic_cmd='$MAGIC_CMD' lt_cv_file_magic_test_file= lt_cv_ld_reload_flag=-r lt_cv_nm_interface='BSD nm' lt_cv_objdir=.libs lt_cv_path_LD=/opt/apps/xalt/0.4.6/bin/ld lt_cv_path_NM='/usr/bin/nm -B' lt_cv_path_mainfest_tool=no lt_cv_prog_compiler_c_o=yes lt_cv_prog_compiler_c_o_FC=yes lt_cv_prog_compiler_pic='-fPIC -DPIC' lt_cv_prog_compiler_pic_FC=-fPIC lt_cv_prog_compiler_pic_works=yes lt_cv_prog_compiler_pic_works_FC=yes lt_cv_prog_compiler_rtti_exceptions=yes lt_cv_prog_compiler_static_works=no lt_cv_prog_compiler_static_works_FC=no lt_cv_prog_gnu_ld=yes lt_cv_sharedlib_from_linklib_cmd='printf %s\n' lt_cv_shlibpath_overrides_runpath=yes lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([ABCDGIRSTW][ABCDGIRSTW]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p'\'' | sed '\''/ __gnu_lto/d'\''' lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[ABCDGIRSTW]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\''' lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[ABCDGIRSTW]* .* \(.*\)$/extern char \1;/p'\''' lt_cv_sys_max_cmd_len=3458764513820540925 lt_cv_to_host_file_cmd=func_convert_file_noop lt_cv_to_tool_file_cmd=func_convert_file_noop ## ----------------- ## ## Output variables. ## ## ----------------- ## ACLOCAL='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run aclocal-1.12' ADD_PARALLEL_FILES='yes' AMDEPBACKSLASH='\' AMDEP_FALSE='#' AMDEP_TRUE='' AMTAR='$${TAR-tar}' AM_BACKSLASH='\' AM_CFLAGS='' AM_CPPFLAGS='-D_LARGEFILE_SOURCE -D_LARGEFILE64_SOURCE -D_BSD_SOURCE ' AM_CXXFLAGS='' AM_DEFAULT_V='$(AM_DEFAULT_VERBOSITY)' AM_DEFAULT_VERBOSITY='0' AM_FCFLAGS=' ' AM_LDFLAGS='' AM_MAKEFLAGS='' AM_V='$(V)' AR='ar' AS='as' AUTOCONF='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoconf' AUTOHEADER='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run autoheader' AUTOMAKE='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run automake-1.12' AWK='gawk' BUILD_ALL_CONDITIONAL_FALSE='' BUILD_ALL_CONDITIONAL_TRUE='#' BUILD_CXX_CONDITIONAL_FALSE='' BUILD_CXX_CONDITIONAL_TRUE='#' BUILD_FORTRAN_CONDITIONAL_FALSE='#' BUILD_FORTRAN_CONDITIONAL_TRUE='' BUILD_HDF5_HL_CONDITIONAL_FALSE='#' BUILD_HDF5_HL_CONDITIONAL_TRUE='' BUILD_PARALLEL_CONDITIONAL_FALSE='#' BUILD_PARALLEL_CONDITIONAL_TRUE='' BUILD_SHARED_SZIP_CONDITIONAL_FALSE='' BUILD_SHARED_SZIP_CONDITIONAL_TRUE='#' BYTESEX='little-endian' CC='mpicc' CCDEPMODE='depmode=gcc3' CC_VERSION='/opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpicc ( Intel(R) C Intel(R) 64 Compiler Version 14.0.1.106 Build 20131008)' CFLAGS=' -fPIC -wd1572 -O3 -xhost ' CLEARFILEBUF='yes' CODESTACK='no' CONFIG_DATE='Thu Feb 19 11:34:53 CST 2015' CONFIG_MODE='production' CONFIG_USER='amesga@login1.stampede.tacc.utexas.edu' CPP='mpicc -E' CPPFLAGS='' CXX='no' CXXCPP='g++ -E' CXXDEPMODE='depmode=gcc3' CXXFLAGS='' CXX_SHARED_CONDITIONAL_FALSE='' CXX_SHARED_CONDITIONAL_TRUE='#' CXX_VERSION='mpif90 ( g++ (GCC) 4.4.7 20120313 )' CYGPATH_W='echo' DEBUG_PKG='' DEFAULT_API_VERSION='v18' DEFS='-DHAVE_CONFIG_H' DEPDIR='.deps' DEPRECATED_SYMBOLS='yes' DIRECT_VFD='no' DIRECT_VFD_CONDITIONAL_FALSE='' DIRECT_VFD_CONDITIONAL_TRUE='#' DLLTOOL='dlltool' DSYMUTIL='' DUMPBIN='' DYNAMIC_DIRS='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EXEEXT='' EXTERNAL_FILTERS='deflate(zlib)' F9XMODEXT='mod' F9XMODFLAG='-I' F9XSUFFIXFLAG='' FC2003='' FC='mpif90' FCFLAGS='' FCFLAGS_f90='' FCLIBS=' -L/opt/apps/intel13/impi/4.1.3.049/intel64/lib -L/opt/apps/intel/13/composer_xe_2013_sp1.1.106/compiler/lib/intel64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64 -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/usr/lib/gcc/x86_64-redhat-linux/4.4.7/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -lmpigf -lmpi -lmpigi -ldl -lrt -lpthread -lifport -lifcore -limf -lsvml -lm -lipgo -lirc -lirc_s' FC_VERSION='/opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpif90' FGREP='/bin/grep -F' FILTERS='shuffle,fletcher32,nbit,scaleoffset' FORTRAN_2003_CONDITIONAL_F_FALSE='' FORTRAN_2003_CONDITIONAL_F_TRUE='#' FORTRAN_DEFAULT_REALisDBLE_F_FALSE='' FORTRAN_DEFAULT_REALisDBLE_F_TRUE='#' FORTRAN_HAVE_SIZEOF_FALSE='#' FORTRAN_HAVE_SIZEOF_TRUE='' FORTRAN_SHARED_CONDITIONAL_FALSE='#' FORTRAN_SHARED_CONDITIONAL_TRUE='' FSEARCH_DIRS='' GPFS='no' GREP='/bin/grep' H5_CFLAGS='-std=c99 -O' H5_CPPFLAGS='-D_POSIX_C_SOURCE=199506L -DNDEBUG -UH5_DEBUG_API' H5_CXXFLAGS=' ' H5_CXX_SHARED='no' H5_FCFLAGS=' -O3' H5_FORTRAN_SHARED='yes' H5_LDFLAGS='' H5_LONE_COLON='yes' H5_VERSION='1.8.10-patch1' HADDR_T='' HAVE_DMALLOC='no' HAVE_FORTRAN_2003='no' HDF5_HL='yes' HDF5_INTERFACES=' fortran' HDF_CXX='no' HDF_FORTRAN2003='no' HDF_FORTRAN='yes' HID_T='' HL='hl' HL_FOR='' HSIZE_T='' HSSIZE_T='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' INSTALL_STRIP_PROGRAM='$(install_sh) -c -s' INSTRUMENT='no' INSTRUMENT_LIBRARY='no' LARGEFILE='yes' LD='/opt/apps/xalt/0.4.6/bin/ld -m elf_x86_64' LDFLAGS='' LIBOBJS='' LIBS=' -lz -lm ' LIBTOOL='$(SHELL) $(top_builddir)/libtool' LIPO='' LL_PATH='' LN_S='ln -s' LTLIBOBJS='' LT_STATIC_EXEC='' MAINT='#' MAINTAINER_MODE_FALSE='' MAINTAINER_MODE_TRUE='#' MAKEINFO='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/missing --run makeinfo' MANIFEST_TOOL=':' MKDIR_P='/bin/mkdir -p' MPE='' MPI_GET_SIZE='yes' NM='/usr/bin/nm -B' NMEDIT='' OBJDUMP='objdump' OBJECT_NAMELEN_DEFAULT_F='' OBJEXT='o' OTOOL64='' OTOOL='' PACKAGE='hdf5' PACKAGE_BUGREPORT='help@hdfgroup.org' PACKAGE_NAME='HDF5' PACKAGE_STRING='HDF5 1.8.10-patch1' PACKAGE_TARNAME='hdf5' PACKAGE_URL='' PACKAGE_VERSION='1.8.10-patch1' PARALLEL='yes' PATH_SEPARATOR=':' PERL='perl' PTHREAD='' RANLIB='ranlib' ROOT='/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1' RUNPARALLEL='/opt/apps/intel13/impi/4.1.3.049/intel64/bin/mpiexec -n $${NPROCS:=6}' RUNSERIAL='' R_INTEGER='' R_LARGE='' SEARCH='VPATH=$(srcdir) $(top_builddir)/src $(top_srcdir)/src' SED='/bin/sed' SETX='set -x' SET_MAKE='' SHELL='/bin/sh' SIZE_T='' STATIC_EXEC='no' STATIC_SHARED='static, shared' STRICT_FORMAT_CHECKS='no' STRIP='strip' TESTPARALLEL='testpar' THREADSAFE='no' TIME='time' TR='/usr/bin/tr' TRACE_API='no' UNAME_INFO='Linux login1.stampede.tacc.utexas.edu 2.6.32-431.17.1.el6.x86_64 #1 SMP Wed May 7 23:32:49 UTC 2014 x86_64 x86_64 x86_64 GNU/Linux' USE_FILTER_DEFLATE='yes' USE_FILTER_FLETCHER32='yes' USE_FILTER_NBIT='yes' USE_FILTER_SCALEOFFSET='yes' USE_FILTER_SHUFFLE='yes' USE_FILTER_SZIP='no' USINGMEMCHECKER='no' VERSION='1.8.10-patch1' WORDS_BIGENDIAN='no' ac_ct_AR='' ac_ct_CC='mpicc' ac_ct_CXX='' ac_ct_DUMPBIN='' ac_ct_FC='' am__EXEEXT_FALSE='' am__EXEEXT_TRUE='#' am__fastdepCC_FALSE='#' am__fastdepCC_TRUE='' am__fastdepCXX_FALSE='#' am__fastdepCXX_TRUE='' am__include='include' am__isrc='' am__leading_dot='.' am__nodep='_no' am__quote='' am__tar='$${TAR-tar} chof - "$$tardir"' am__untar='$${TAR-tar} xf -' bindir='${exec_prefix}/bin' build='x86_64-unknown-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_vendor='unknown' datadir='${datarootdir}' datarootdir='${prefix}/share' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' enable_shared='yes' enable_static='yes' exec_prefix='${prefix}' host='x86_64-unknown-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/externalpackages/hdf5-1.8.10-patch1.1/bin/install-sh' libdir='/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/work/01624/amesga/Software/petsc/sandybridge-cxx-dbg' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "HDF5" #define PACKAGE_TARNAME "hdf5" #define PACKAGE_VERSION "1.8.10-patch1" #define PACKAGE_STRING "HDF5 1.8.10-patch1" #define PACKAGE_BUGREPORT "help@hdfgroup.org" #define PACKAGE_URL "" #define PACKAGE "hdf5" #define VERSION "1.8.10-patch1" #define FC_FUNC(name,NAME) name ## _ #define FC_FUNC_(name,NAME) name ## _ #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_DLFCN_H 1 #define LT_OBJDIR ".libs/" #define HAVE_LIBM 1 #define STDC_HEADERS 1 #define TIME_WITH_SYS_TIME 1 #define HAVE_DIFFTIME 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_UNISTD_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_STDDEF_H 1 #define HAVE_SETJMP_H 1 #define HAVE_FEATURES_H 1 #define HAVE_STDINT_H 1 #define HAVE_SYS_TIMEB_H 1 #define HAVE_LSEEK64 1 #define HAVE_FSEEKO64 1 #define HAVE_FTELLO64 1 #define HAVE_FTRUNCATE64 1 #define HAVE_FSEEKO 1 #define HAVE_FTELLO 1 #define HAVE_STAT64 1 #define HAVE_FSTAT64 1 #define SIZEOF_CHAR 1 #define SIZEOF_SHORT 2 #define SIZEOF_INT 4 #define SIZEOF_UNSIGNED 4 #define SIZEOF_LONG 8 #define SIZEOF_LONG_LONG 8 #define SIZEOF___INT64 8 #define SIZEOF_FLOAT 4 #define SIZEOF_DOUBLE 8 #define SIZEOF_LONG_DOUBLE 16 #include #include #define SIZEOF_INT8_T 1 #define SIZEOF_UINT8_T 1 #define SIZEOF_INT_LEAST8_T 1 #define SIZEOF_UINT_LEAST8_T 1 #define SIZEOF_INT_FAST8_T 1 #define SIZEOF_UINT_FAST8_T 1 #define SIZEOF_INT16_T 2 #define SIZEOF_UINT16_T 2 #define SIZEOF_INT_LEAST16_T 2 #define SIZEOF_UINT_LEAST16_T 2 #define SIZEOF_INT_FAST16_T 8 #define SIZEOF_UINT_FAST16_T 8 #define SIZEOF_INT32_T 4 #define SIZEOF_UINT32_T 4 #define SIZEOF_INT_LEAST32_T 4 #define SIZEOF_UINT_LEAST32_T 4 #define SIZEOF_INT_FAST32_T 8 #define SIZEOF_UINT_FAST32_T 8 #define SIZEOF_INT64_T 8 #define SIZEOF_UINT64_T 8 #define SIZEOF_INT_LEAST64_T 8 #define SIZEOF_UINT_LEAST64_T 8 #define SIZEOF_INT_FAST64_T 8 #define SIZEOF_UINT_FAST64_T 8 #define SIZEOF_SIZE_T 8 #define SIZEOF_SSIZE_T 8 #define SIZEOF_PTRDIFF_T 8 #include /*for off_t definition*/ #define SIZEOF_OFF_T 8 #define SIZEOF_OFF64_T 8 #define DEV_T_IS_SCALAR 1 #define HAVE_ZLIB_H 1 #define HAVE_LIBZ 1 #define HAVE_FILTER_DEFLATE 1 #define HAVE_TM_GMTOFF 1 #define HAVE_STRUCT_TM_TM_ZONE 1 #define HAVE_TM_ZONE 1 #define HAVE_STRUCT_TIMEZONE 1 #define GETTIMEOFDAY_GIVES_TZ 1 #define HAVE_STAT_ST_BLOCKS 1 #define HAVE_IOCTL 1 #define HAVE_TIOCGWINSZ 1 #define HAVE_TIOCGETD 1 #define HAVE_ALARM 1 #define HAVE_FORK 1 #define HAVE_FREXPF 1 #define HAVE_FREXPL 1 #define HAVE_GETHOSTNAME 1 #define HAVE_GETPWUID 1 #define HAVE_GETRUSAGE 1 #define HAVE_LSTAT 1 #define HAVE_RAND_R 1 #define HAVE_RANDOM 1 #define HAVE_SIGNAL 1 #define HAVE_LONGJMP 1 #define HAVE_SETJMP 1 #define HAVE_SIGLONGJMP 1 #define HAVE_SIGPROCMASK 1 #define HAVE_SNPRINTF 1 #define HAVE_SRANDOM 1 #define HAVE_STRDUP 1 #define HAVE_SYMLINK 1 #define HAVE_SYSTEM 1 #define HAVE_TMPFILE 1 #define HAVE_VASPRINTF 1 #define HAVE_WAITPID 1 #define HAVE_VSNPRINTF 1 #define VSNPRINTF_WORKS 1 #define HAVE_ATTRIBUTE 1 #define HAVE_C99_FUNC 1 #define HAVE_FUNCTION 1 #define HAVE_C99_DESIGNATED_INITIALIZER 1 #define PRINTF_LL_WIDTH "l" #define SYSTEM_SCOPE_THREADS 1 #define CLEAR_MEMORY 1 #define HAVE_PARALLEL 1 #define HAVE_MPI_MULTI_LANG_Comm 1 #define HAVE_MPI_MULTI_LANG_Info 1 #define MPI_FILE_SET_SIZE_BIG 1 #define HAVE_MPI_GET_SIZE 1 #define HAVE_FILTER_SHUFFLE 1 #define HAVE_FILTER_FLETCHER32 1 #define HAVE_FILTER_NBIT 1 #define HAVE_FILTER_SCALEOFFSET 1 #define DEFAULT_VFD H5FD_SEC2 #define WANT_DCONV_EXCEPTION 1 #define WANT_DATA_ACCURACY 1 #define CONVERT_DENORMAL_FLOAT 1 #define LDOUBLE_TO_INTEGER_ACCURATE 1 #define LDOUBLE_TO_INTEGER_WORKS 1 #define INTEGER_TO_LDOUBLE_ACCURATE 1 #define ULONG_TO_FLOAT_ACCURATE 1 #define ULONG_TO_FP_BOTTOM_BIT_ACCURATE 1 #define FP_TO_ULLONG_ACCURATE 1 #define LDOUBLE_TO_UINT_ACCURATE 1 #define ULLONG_TO_FP_CAST_WORKS 1 #define LLONG_TO_FP_CAST_WORKS 1 #define ULLONG_TO_LDOUBLE_PRECISION 1 #define FP_TO_INTEGER_OVERFLOW_WORKS 1 #define LDOUBLE_TO_LLONG_ACCURATE 1 #define LLONG_TO_LDOUBLE_CORRECT 1 #define INCLUDE_HL 1 #define HAVE_EMBEDDED_LIBINFO 1 #define NO_ALIGNMENT_RESTRICTIONS 1 configure: exit 0